******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/PHB2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr17:11876220-11876300 1.0000 80 chr19:40995477-40995557 1.0000 80 chr9:102907623-102907703 1.0000 80 chr14:88491094-88491174 1.0000 80 chr1:11160071-11160151 1.0000 80 chr6:142337949-142338029 1.0000 80 chr7:7082258-7082338 1.0000 80 chr3:152949176-152949256 1.0000 80 chr9:124553263-124553343 1.0000 80 chr11:68391348-68391428 1.0000 80 chr9:68508377-68508457 1.0000 80 chr3:32115905-32115985 1.0000 80 chr3:49398905-49398985 1.0000 80 chr1:6489864-6489944 1.0000 80 chr11:62436662-62436742 1.0000 80 chr4:144940549-144940629 1.0000 80 chr14:35122429-35122509 1.0000 80 chr5:32288439-32288519 1.0000 80 chr1:25611714-25611794 1.0000 80 chrX:15184180-15184260 1.0000 80 chr4:129566585-129566665 1.0000 80 chr7:92515493-92515573 1.0000 80 chr17:19913691-19913771 1.0000 80 chr11:124537651-12453773 1.0000 80 chr3:171164806-171164886 1.0000 80 chr2:25479546-25479626 1.0000 80 chr20:9129880-9129960 1.0000 80 chr9:35004460-35004540 1.0000 80 chr4:95309247-95309327 1.0000 80 chr7:104607699-104607779 1.0000 80 chr1:52541461-52541541 1.0000 80 chr17:62919216-62919296 1.0000 80 chr19:381054-381134 1.0000 80 chr6:159303120-159303200 1.0000 80 chr1:35602541-35602621 1.0000 80 chr8:96280541-96280621 1.0000 80 chr7:5492408-5492488 1.0000 80 chr6:14301847-14301927 1.0000 80 chr1:52097564-52097644 1.0000 80 chr14:102144511-10214459 1.0000 80 chr8:67664918-67664998 1.0000 80 chr2:114367617-114367697 1.0000 80 chr13:44972165-44972245 1.0000 80 chr7:127844653-127844733 1.0000 80 chr11:5186203-5186283 1.0000 80 chr20:46153255-46153335 1.0000 80 chr11:61055390-61055470 1.0000 80 chr1:160919157-160919237 1.0000 80 chr1:160979571-160979651 1.0000 80 chr1:95100701-95100781 1.0000 80 chr5:158555241-158555321 1.0000 80 chr3:177148581-177148661 1.0000 80 chr1:186257581-186257661 1.0000 80 chr8:93107683-93107763 1.0000 80 chr7:99321012-99321092 1.0000 80 chr7:64405499-64405579 1.0000 80 chr2:218706961-218707041 1.0000 80 chr4:25052494-25052574 1.0000 80 chr6:21102042-21102122 1.0000 80 chr8:38068315-38068395 1.0000 80 chr1:25606333-25606413 1.0000 80 chr2:174924265-174924345 1.0000 80 chr18:968436-968516 1.0000 80 chr22:32022692-32022772 1.0000 80 chr9:136159297-136159377 1.0000 80 chr10:127293916-12729399 1.0000 80 chr6:112126183-112126263 1.0000 80 chr1:211395917-211395997 1.0000 80 chr22:44365548-44365628 1.0000 80 chr16:21272944-21273024 1.0000 80 chr7:99659255-99659335 1.0000 80 chr16:73071833-73071913 1.0000 80 chr4:1884768-1884848 1.0000 80 chr19:516712-516792 1.0000 80 chr19:14502130-14502210 1.0000 80 chr21:38798147-38798227 1.0000 80 chr6:16263861-16263941 1.0000 80 chr3:195805980-195806060 1.0000 80 chrX:134996732-134996812 1.0000 80 chr14:23366708-23366788 1.0000 80 chr6:109606051-109606131 1.0000 80 chr1:28851642-28851722 1.0000 80 chr17:62971050-62971130 1.0000 80 chr6:150881285-150881365 1.0000 80 chr12:53703882-53703962 1.0000 80 chr11:62645218-62645298 1.0000 80 chr15:31270678-31270758 1.0000 80 chr15:45709924-45710004 1.0000 80 chr7:158628264-158628344 1.0000 80 chr2:209354100-209354180 1.0000 80 chr2:169990966-169991046 1.0000 80 chr17:60311560-60311640 1.0000 80 chr5:131987933-131988013 1.0000 80 chr1:70005892-70005972 1.0000 80 chr20:3890811-3890891 1.0000 80 chr7:43026534-43026614 1.0000 80 chr13:19398955-19399035 1.0000 80 chr17:14064894-14064974 1.0000 80 chr7:77502873-77502953 1.0000 80 chr10:13457785-13457865 1.0000 80 chr14:30119949-30120029 1.0000 80 chr5:153121723-153121803 1.0000 80 chr5:122199152-122199232 1.0000 80 chr4:103277084-103277164 1.0000 80 chr6:80314407-80314487 1.0000 80 chr1:211495158-211495238 1.0000 80 chrX:49005178-49005258 1.0000 80 chr6:74238777-74238857 1.0000 80 chr8:95537587-95537667 1.0000 80 chr10:126738228-12673830 1.0000 80 chr2:172487754-172487834 1.0000 80 chr9:125209201-125209281 1.0000 80 chr2:240008158-240008238 1.0000 80 chr11:16626400-16626480 1.0000 80 chr3:156178166-156178246 1.0000 80 chr9:4862958-4863038 1.0000 80 chr2:191136665-191136745 1.0000 80 chr16:56323878-56323958 1.0000 80 chr1:46886055-46886135 1.0000 80 chrX:49100800-49100880 1.0000 80 chr11:62136565-62136645 1.0000 80 chr3:14162501-14162581 1.0000 80 chr18:67693008-67693088 1.0000 80 chr1:159927656-159927736 1.0000 80 chr8:30028697-30028777 1.0000 80 chr19:53664570-53664650 1.0000 80 chr15:85831588-85831668 1.0000 80 chr20:61408502-61408582 1.0000 80 chr16:19499330-19499410 1.0000 80 chr16:8688305-8688385 1.0000 80 chr1:191793096-191793176 1.0000 80 chr17:26854439-26854519 1.0000 80 chr6:160992397-160992477 1.0000 80 chr2:236982051-236982131 1.0000 80 chr5:1067959-1068039 1.0000 80 chr20:39679398-39679478 1.0000 80 chr10:7049682-7049762 1.0000 80 chr17:4152915-4152995 1.0000 80 chr12:67314157-67314237 1.0000 80 chr1:25739882-25739962 1.0000 80 chr5:178110919-178110999 1.0000 80 chr14:36733970-36734050 1.0000 80 chr9:130188242-130188322 1.0000 80 chr14:20645698-20645778 1.0000 80 chr2:217957621-217957701 1.0000 80 chr12:92798834-92798914 1.0000 80 chr4:99608187-99608267 1.0000 80 chr20:35783271-35783351 1.0000 80 chr1:207809088-207809168 1.0000 80 chr16:25783258-25783338 1.0000 80 chr1:224058451-224058531 1.0000 80 chr18:33780475-33780555 1.0000 80 chr7:103451062-103451142 1.0000 80 chr16:56312539-56312619 1.0000 80 chr6:27741808-27741888 1.0000 80 chr20:33780337-33780417 1.0000 80 chr18:33262623-33262703 1.0000 80 chr11:58912726-58912806 1.0000 80 chr22:21448142-21448222 1.0000 80 chr11:85859527-85859607 1.0000 80 chr20:48715012-48715092 1.0000 80 chr1:243269325-243269405 1.0000 80 chr15:74902916-74902996 1.0000 80 chr6:164767853-164767933 1.0000 80 chr3:133472796-133472876 1.0000 80 chr4:71520436-71520516 1.0000 80 chrX:47543031-47543111 1.0000 80 chr4:144826794-144826874 1.0000 80 chr12:108879336-10887941 1.0000 80 chr7:107876174-107876254 1.0000 80 chr7:128790239-128790319 1.0000 80 chr15:61913562-61913642 1.0000 80 chr2:128300697-128300777 1.0000 80 chr3:141567995-141568075 1.0000 80 chr19:45093955-45094035 1.0000 80 chr3:5123728-5123808 1.0000 80 chr15:40189573-40189653 1.0000 80 chr4:144896909-144896989 1.0000 80 chr16:23678660-23678740 1.0000 80 chr12:23052379-23052459 1.0000 80 chr1:41405184-41405264 1.0000 80 chr1:151687992-151688072 1.0000 80 chr15:64731368-64731448 1.0000 80 chr2:239331045-239331125 1.0000 80 chr3:98302749-98302829 1.0000 80 chr15:43513429-43513509 1.0000 80 chr19:35411435-35411515 1.0000 80 chr11:125423023-12542310 1.0000 80 chr17:57779792-57779872 1.0000 80 chr12:14388196-14388276 1.0000 80 chr19:21311710-21311790 1.0000 80 chr8:37949392-37949472 1.0000 80 chr13:38533661-38533741 1.0000 80 chr3:32750354-32750434 1.0000 80 chr7:100627899-100627979 1.0000 80 chr10:103892327-10389240 1.0000 80 chr4:145000108-145000188 1.0000 80 chr7:10774368-10774448 1.0000 80 chr1:110955917-110955997 1.0000 80 chr1:43867883-43867963 1.0000 80 chr2:84178561-84178641 1.0000 80 chr11:85862539-85862619 1.0000 80 chr5:131649924-131650004 1.0000 80 chr2:11419654-11419734 1.0000 80 chr9:35728616-35728696 1.0000 80 chr2:191049367-191049447 1.0000 80 chr4:119495641-119495721 1.0000 80 chr15:73797384-73797464 1.0000 80 chr6:28514942-28515022 1.0000 80 chr13:95923488-95923568 1.0000 80 chr16:10591148-10591228 1.0000 80 chr4:69730322-69730402 1.0000 80 chr4:32003782-32003862 1.0000 80 chr3:138941046-138941126 1.0000 80 chr12:6874582-6874662 1.0000 80 chr15:57675326-57675406 1.0000 80 chr12:50956904-50956984 1.0000 80 chr3:125152098-125152178 1.0000 80 chr4:140364943-140365023 1.0000 80 chr22:36764666-36764746 1.0000 80 chr3:45010054-45010134 1.0000 80 chr17:65852220-65852300 1.0000 80 chr1:65696956-65697036 1.0000 80 chr4:145061907-145061987 1.0000 80 chr9:69491644-69491724 1.0000 80 chr1:18861042-18861122 1.0000 80 chr5:134528270-134528350 1.0000 80 chr7:72176117-72176197 1.0000 80 chr1:61514692-61514772 1.0000 80 chr22:37948834-37948914 1.0000 80 chr5:148018807-148018887 1.0000 80 chr20:37192565-37192645 1.0000 80 chr5:139990838-139990918 1.0000 80 chr7:90929388-90929468 1.0000 80 chr11:82503057-82503137 1.0000 80 chr19:6682880-6682960 1.0000 80 chr4:68418034-68418114 1.0000 80 chr2:202305072-202305152 1.0000 80 chr11:43974055-43974135 1.0000 80 chr4:99722492-99722572 1.0000 80 chr17:49243392-49243472 1.0000 80 chr1:237077132-237077212 1.0000 80 chr5:148127224-148127304 1.0000 80 chr5:149861721-149861801 1.0000 80 chr12:28345254-28345334 1.0000 80 chr16:9171962-9172042 1.0000 80 chr8:30892376-30892456 1.0000 80 chr11:17208653-17208733 1.0000 80 chrX:153163517-153163597 1.0000 80 chr3:141765756-141765836 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_PHB2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/PHB2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.261 C 0.236 G 0.242 T 0.261 Background letter frequencies (from file dataset with add-one prior applied): A 0.261 C 0.236 G 0.242 T 0.261 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF SAGATAAG MEME-1 width = 8 sites = 118 llr = 821 E-value = 1.7e-041 ******************************************************************************** -------------------------------------------------------------------------------- Motif SAGATAAG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 19:a:872 pos.-specific C 3::::::2 probability G 4:a:::26 matrix T 21::a2:: bits 2.1 * 1.9 *** 1.7 *** 1.5 *** Relative 1.2 ***** Entropy 1.0 ***** (10.0 bits) 0.8 ****** 0.6 ******* 0.4 ******* 0.2 ******** 0.0 -------- Multilevel GAGATAAG consensus C GA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGATAAG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:82503057-82503137 71 1.72e-05 TTGGTAGGTG GAGATAAG CA chr1:61514692-61514772 5 1.72e-05 TGAG GAGATAAG CTAGTTATCA chr9:69491644-69491724 24 1.72e-05 ctttgcagtt gagataag aggaaggcat chr2:172487754-172487834 62 1.72e-05 tggaggacat gagataag attgtgcagg chr10:126738228-12673830 33 1.72e-05 TGGACGGGCA GAGATAAG CTATCAAAGC chr17:60311560-60311640 2 1.72e-05 a gagataag accctatctc chr2:209354100-209354180 22 1.72e-05 CCTGGACAGA GAGATAAG GAACATCTTG chr6:16263861-16263941 70 1.72e-05 ttggggtgca gagataag agg chr11:5186203-5186283 70 1.72e-05 tcagggtgca gagataag agg chr6:14301847-14301927 48 1.72e-05 ttggggcaca gagataag aggtcggggt chr1:35602541-35602621 73 1.72e-05 ttggggtgca gagataag chr4:95309247-95309327 57 1.72e-05 tcagggtgca gagataag aggttggggt chr4:129566585-129566665 45 1.72e-05 ctgggacaca gagataag aggtcggggc chr3:152949176-152949256 58 1.72e-05 tcagggcaca gagataag aggttggggc chr14:88491094-88491174 62 1.72e-05 ctttgcagtt gagataag aggaaggcat chr9:102907623-102907703 49 1.72e-05 atggggtgca gagataag aagtcagggc chr3:141765756-141765836 43 3.39e-05 CTGGGAAAAG CAGATAAG TGGAAGCAAT chr12:6874582-6874662 17 3.39e-05 GTGCCTGACT CAGATAAG ACAAGAGCAG chr1:43867883-43867963 42 3.39e-05 ATGAATGTGA CAGATAAG CATTAATCAG chr8:37949392-37949472 47 3.39e-05 ctggtgagta cagataag gcttgctgag chr11:125423023-12542310 28 3.39e-05 gtggtggctc cagataag ggggagtgga chr18:33780475-33780555 61 3.39e-05 CTGGGGCCTG CAGATAAG AACTGCACAC chr20:35783271-35783351 46 3.39e-05 aggagaagag cagataag aagacaatgc chr17:26854439-26854519 46 3.39e-05 CCAGGATAGG CAGATAAG GACAGCAGGG chr13:19398955-19399035 36 3.39e-05 aagttaagtg cagataag ggaacctgga chr4:25052494-25052574 46 3.39e-05 CTGTTAGGGT CAGATAAG TCCTGGTTAG chr4:140364943-140365023 51 5.24e-05 tttgtcggag gagataaa ccctacactg chr2:11419654-11419734 33 5.24e-05 caagaagaaa gagataaa ttcactatca chr2:239331045-239331125 67 5.24e-05 GTCAGGTGAG GAGATAAA TGCTGC chr1:159927656-159927736 46 5.24e-05 ctggagttca gagataaa gagttttaat chr1:186257581-186257661 45 5.24e-05 AAGCATGGAA GAGATAAA GGGTGTTGGG chr6:159303120-159303200 58 5.24e-05 ctgggttctg gagataaa gagtaaagga chr5:32288439-32288519 15 5.24e-05 acctttgtct gagataaa ctctgcactg chr7:90929388-90929468 63 8.77e-05 cctgctatca tagataag gtctccattt chr5:178110919-178110999 6 8.77e-05 ggcct tagataag agagtgaatg chr7:104607699-104607779 14 8.77e-05 GTGGGCTGAG TAGATAAG GCAAGCTGGG chr5:148127224-148127304 32 1.22e-04 tatgtgttgg aagataag acatgttcat chr3:45010054-45010134 35 1.22e-04 ttgggaagct gagatagg aggatcgcct chr6:28514942-28515022 64 1.22e-04 tctgcacagc aagataag taatcagca chr20:61408502-61408582 5 1.22e-04 gaag gagatagg actggaagga chr15:85831588-85831668 71 1.22e-04 tgttttgttt gagatagg gt chr7:43026534-43026614 15 1.22e-04 TGTGGAAAAA AAGATAAG ACTGGTGAGA chr5:131987933-131988013 40 1.22e-04 ctgggaggcc aagataag aggatcactt chr15:31270678-31270758 32 1.22e-04 AGCTGGCTGG AAGATAAG GGCTGTTTGG chr14:23366708-23366788 21 1.22e-04 AAGCTGCTTC AAGATAAG GTCTGAGGCT chr17:57779792-57779872 46 1.40e-04 gctgcaaata cagataaa acttcactca chr9:4862958-4863038 48 1.40e-04 GTTTTTTAGG CAGATAAA CCTGTGAACT chr17:14064894-14064974 71 1.40e-04 tggaagagaa cagataaa ga chr16:9171962-9172042 37 1.56e-04 ctgcggcagg cagataac ctgaggtcaa chr9:35728616-35728696 72 1.56e-04 AGCTTTTGCA CAGATAAC C chr6:80314407-80314487 15 1.56e-04 gtgttggggg cagataac ttgtcttttt chr22:37948834-37948914 68 1.72e-04 CTGGGTGACA CAGATAGG GATGC chr20:37192565-37192645 23 1.89e-04 ctgaagagga gagaTTAG CCAGATCTCA chr4:119495641-119495721 27 1.89e-04 aattcaagat gagattag gatggggaca chr1:207809088-207809168 68 1.89e-04 ctgggtactt gagattag ggagt chr7:64405499-64405579 9 2.26e-04 gaaaggtt tagataaa tgtggatttc chr20:46153255-46153335 26 2.26e-04 catgccagtt tagataaa atgacttggg chr7:7082258-7082338 20 2.26e-04 cagggaccta tagataaa accccatctc chr1:237077132-237077212 7 2.98e-04 tgatac tagataac ttacactcta chr19:6682880-6682960 15 2.98e-04 ctggccaaca aagataaa aatgcagcaa chr3:32750354-32750434 29 2.98e-04 TACTTTTACC TAGATAAC CTAAATCCGA chr7:99321012-99321092 6 2.98e-04 gacaa tagataac ttcctttaac chr3:177148581-177148661 70 2.98e-04 ACTGAATACC TAGATAAC CTG chr11:62436662-62436742 69 2.98e-04 GCTGCAGGAA AAGATAAA ATTA chr22:36764666-36764746 30 3.66e-04 CAATTTCTCT AAGATAAC AGTGCTGGGA chr3:141567995-141568075 62 3.66e-04 TAGGCAGAAG CTGATAag gagaagcagg chr1:46886055-46886135 24 3.66e-04 CTGTTTACAG GAGATAGC TGCCATGTCC chr11:62645218-62645298 68 3.66e-04 caggtggtgg ctgataag attgg chr21:38798147-38798227 42 3.66e-04 GGAGAACCCT AAGATAAC CAACAGAGGA chr22:44365548-44365628 58 3.66e-04 tctggggaca gagatagc acttatcagg chr7:72176117-72176197 31 3.83e-04 caggtgcact aagatagg gaggctaaaa chr16:25783258-25783338 21 3.83e-04 CATTTAGTGG AAGATAGG ATAACGTTTC chr1:70005892-70005972 51 3.83e-04 GGTGAGGACT AAGATAGG GTCGAGTTAT chr9:68508377-68508457 33 4.00e-04 GTCACAGGGG CAGATAGA AGAGAAGGAT chr15:40189573-40189653 44 4.33e-04 CTGTGTGCAA GAGATTAA GACTTATCTC chr22:32022692-32022772 54 4.33e-04 TTGGCCTGCA CAGATAGC GGAAGGAAGA chr8:67664918-67664998 69 4.33e-04 GATGCTGAGG GAGATTAA GCCT chr4:99722492-99722572 40 5.04e-04 TGCTGTGTCA GAGATTAC AAACAGTGAG chr19:35411435-35411515 11 5.04e-04 gtgatagtct gagatatg gcctcgtggg chr4:71520436-71520516 6 5.04e-04 tcgtg gagattac actctagtga chr22:21448142-21448222 70 5.04e-04 gcctggagtt gagatatg ctg chr1:211495158-211495238 62 5.04e-04 cagagtagct gagattac gggtgcctgc chr5:158555241-158555321 4 5.04e-04 GGG GAGATTAC CAAGCCCCTG chr11:85862539-85862619 44 5.74e-04 AGCCCCTAAA TTGATAAG CACAGGGTGG chr1:25739882-25739962 55 5.74e-04 AGCTGCTGGT TTGATAAG CTGATGGGCT chr19:14502130-14502210 43 5.74e-04 CATGTGAGAT GTGATAAC GTTAtcatgc chr4:1884768-1884848 23 5.74e-04 tggagtaaaa ttgataag ttgtgttgtt chr19:381054-381134 4 5.74e-04 TGA TTGATAAG CAGATGTAGG chr13:95923488-95923568 48 6.08e-04 AGTGTGCAAT GTGATAGG GGCTGGCTGG chr4:103277084-103277164 60 6.08e-04 CCTGGCCTGT GTGATAGG TACAGAACTG chr15:57675326-57675406 68 6.96e-04 TGGAGAGGAC CTGATAAA GAATG chr7:107876174-107876254 20 6.96e-04 tggtatctcg tagataga ggccagggat chr7:103451062-103451142 26 6.96e-04 CTGCTGGAGA CAGATTAC CCTTCCTTGC chr8:30028697-30028777 43 6.96e-04 CTTTCTGTAA CAGATATG ACGATCACTT chr7:158628264-158628344 31 6.96e-04 tgtctgtgtg tagataga tgatagagaa chr8:96280541-96280621 22 6.96e-04 tacgtaatcc cagattac aggctcgtgc chr2:236982051-236982131 17 7.63e-04 ATCATGGGTC TAGATAGC TTATCAGGAC chrX:134996732-134996812 4 7.63e-04 tgg ctgataac tctgcaggca chr20:9129880-9129960 53 7.63e-04 cctctaggct ctgataac gtcacatcct chr4:145061907-145061987 10 7.95e-04 CATCATCAG CTGATAGG CAGGGGAGGC chr4:144940549-144940629 20 7.95e-04 CCATCATCAG CTGATAGG CAGGGGAGGC chr16:19499330-19499410 41 8.13e-04 tggccctggg gtgattag ggcaggggag chr2:191049367-191049447 10 8.28e-04 TGCAATAAG GAGATACG GCTTCCCCTA chr9:136159297-136159377 43 8.28e-04 gtgacagcct gagatacg gcctcgaggg chr11:58912726-58912806 56 9.77e-04 gaaggaagga gagattga gagacagaga chr6:27741808-27741888 12 9.77e-04 ctggtagtta aagattaa cccctgacct chr16:8688305-8688385 19 9.77e-04 CACGGCATTT AAGATTAA GGCTACACCA chr18:67693008-67693088 70 9.77e-04 ttgcctgcca gagattga tac chr11:61055390-61055470 28 9.77e-04 acgaggtcag gagattga gattatcctg chr2:114367617-114367697 10 9.77e-04 acgccctca tagatatg cccagaaatc chr11:17208653-17208733 51 1.13e-03 ggaagtagtt gagatTGC CCTGGGAGAA chr4:99608187-99608267 1 1.13e-03 . GAGAGAAG AGTTAATGGG chr17:4152915-4152995 72 1.13e-03 CTGCATCTTC AAGATATG C chr8:93107683-93107763 49 1.13e-03 GGAGGGAGAG GAGAGAAG CCAACGTGCA chr1:160979571-160979651 3 1.13e-03 ac atgataaa aattacaaaa chr7:100627899-100627979 24 1.22e-03 tgccttttga ttgatagg tgtgtcattt chr3:138941046-138941126 51 1.29e-03 CTGCAGCCTC CAGATTGA GGGAGAAATG chr1:224058451-224058531 52 1.40e-03 ctgtcccagg gagatgag cattttatct -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGATAAG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:82503057-82503137 1.7e-05 70_[+1]_2 chr1:61514692-61514772 1.7e-05 4_[+1]_68 chr9:69491644-69491724 1.7e-05 23_[+1]_49 chr2:172487754-172487834 1.7e-05 61_[+1]_11 chr10:126738228-12673830 1.7e-05 32_[+1]_40 chr17:60311560-60311640 1.7e-05 1_[+1]_71 chr2:209354100-209354180 1.7e-05 21_[+1]_51 chr6:16263861-16263941 1.7e-05 69_[+1]_3 chr11:5186203-5186283 1.7e-05 69_[+1]_3 chr6:14301847-14301927 1.7e-05 47_[+1]_25 chr1:35602541-35602621 1.7e-05 72_[+1] chr4:95309247-95309327 1.7e-05 56_[+1]_16 chr4:129566585-129566665 1.7e-05 44_[+1]_28 chr3:152949176-152949256 1.7e-05 57_[+1]_15 chr14:88491094-88491174 1.7e-05 61_[+1]_11 chr9:102907623-102907703 1.7e-05 48_[+1]_24 chr3:141765756-141765836 3.4e-05 42_[+1]_30 chr12:6874582-6874662 3.4e-05 16_[+1]_56 chr1:43867883-43867963 3.4e-05 41_[+1]_31 chr8:37949392-37949472 3.4e-05 46_[+1]_26 chr11:125423023-12542310 3.4e-05 27_[+1]_45 chr18:33780475-33780555 3.4e-05 60_[+1]_12 chr20:35783271-35783351 3.4e-05 45_[+1]_27 chr17:26854439-26854519 3.4e-05 45_[+1]_27 chr13:19398955-19399035 3.4e-05 35_[+1]_37 chr4:25052494-25052574 3.4e-05 45_[+1]_27 chr4:140364943-140365023 5.2e-05 50_[+1]_22 chr2:11419654-11419734 5.2e-05 32_[+1]_40 chr2:239331045-239331125 5.2e-05 66_[+1]_6 chr1:159927656-159927736 5.2e-05 45_[+1]_27 chr1:186257581-186257661 5.2e-05 44_[+1]_28 chr6:159303120-159303200 5.2e-05 57_[+1]_15 chr5:32288439-32288519 5.2e-05 14_[+1]_58 chr7:90929388-90929468 8.8e-05 62_[+1]_10 chr5:178110919-178110999 8.8e-05 5_[+1]_67 chr7:104607699-104607779 8.8e-05 13_[+1]_59 chr5:148127224-148127304 0.00012 31_[+1]_41 chr3:45010054-45010134 0.00012 34_[+1]_38 chr6:28514942-28515022 0.00012 63_[+1]_9 chr20:61408502-61408582 0.00012 4_[+1]_68 chr15:85831588-85831668 0.00012 70_[+1]_2 chr7:43026534-43026614 0.00012 14_[+1]_58 chr5:131987933-131988013 0.00012 39_[+1]_33 chr15:31270678-31270758 0.00012 31_[+1]_41 chr14:23366708-23366788 0.00012 20_[+1]_52 chr17:57779792-57779872 0.00014 45_[+1]_27 chr9:4862958-4863038 0.00014 47_[+1]_25 chr17:14064894-14064974 0.00014 70_[+1]_2 chr16:9171962-9172042 0.00016 36_[+1]_36 chr9:35728616-35728696 0.00016 71_[+1]_1 chr6:80314407-80314487 0.00016 14_[+1]_58 chr22:37948834-37948914 0.00017 67_[+1]_5 chr20:37192565-37192645 0.00019 22_[+1]_50 chr4:119495641-119495721 0.00019 26_[+1]_46 chr1:207809088-207809168 0.00019 67_[+1]_5 chr7:64405499-64405579 0.00023 8_[+1]_64 chr20:46153255-46153335 0.00023 25_[+1]_47 chr7:7082258-7082338 0.00023 19_[+1]_53 chr1:237077132-237077212 0.0003 6_[+1]_66 chr19:6682880-6682960 0.0003 14_[+1]_58 chr3:32750354-32750434 0.0003 28_[+1]_44 chr7:99321012-99321092 0.0003 5_[+1]_67 chr3:177148581-177148661 0.0003 69_[+1]_3 chr11:62436662-62436742 0.0003 68_[+1]_4 chr22:36764666-36764746 0.00037 29_[+1]_43 chr3:141567995-141568075 0.00037 61_[+1]_11 chr1:46886055-46886135 0.00037 23_[+1]_49 chr11:62645218-62645298 0.00037 67_[+1]_5 chr21:38798147-38798227 0.00037 41_[+1]_31 chr22:44365548-44365628 0.00037 57_[+1]_15 chr7:72176117-72176197 0.00038 30_[+1]_42 chr16:25783258-25783338 0.00038 20_[+1]_52 chr1:70005892-70005972 0.00038 50_[+1]_22 chr9:68508377-68508457 0.0004 32_[+1]_40 chr15:40189573-40189653 0.00043 43_[+1]_29 chr22:32022692-32022772 0.00043 53_[+1]_19 chr8:67664918-67664998 0.00043 68_[+1]_4 chr4:99722492-99722572 0.0005 39_[+1]_33 chr19:35411435-35411515 0.0005 10_[+1]_62 chr4:71520436-71520516 0.0005 5_[+1]_67 chr22:21448142-21448222 0.0005 69_[+1]_3 chr1:211495158-211495238 0.0005 61_[+1]_11 chr5:158555241-158555321 0.0005 3_[+1]_69 chr11:85862539-85862619 0.00057 43_[+1]_29 chr1:25739882-25739962 0.00057 54_[+1]_18 chr19:14502130-14502210 0.00057 42_[+1]_30 chr4:1884768-1884848 0.00057 22_[+1]_50 chr19:381054-381134 0.00057 3_[+1]_69 chr13:95923488-95923568 0.00061 47_[+1]_25 chr4:103277084-103277164 0.00061 59_[+1]_13 chr15:57675326-57675406 0.0007 67_[+1]_5 chr7:107876174-107876254 0.0007 19_[+1]_53 chr7:103451062-103451142 0.0007 25_[+1]_47 chr8:30028697-30028777 0.0007 42_[+1]_30 chr7:158628264-158628344 0.0007 30_[+1]_42 chr8:96280541-96280621 0.0007 21_[+1]_51 chr2:236982051-236982131 0.00076 16_[+1]_56 chrX:134996732-134996812 0.00076 3_[+1]_69 chr20:9129880-9129960 0.00076 52_[+1]_20 chr4:145061907-145061987 0.0008 9_[+1]_63 chr4:144940549-144940629 0.0008 19_[+1]_53 chr16:19499330-19499410 0.00081 40_[+1]_32 chr2:191049367-191049447 0.00083 9_[+1]_63 chr9:136159297-136159377 0.00083 42_[+1]_30 chr11:58912726-58912806 0.00098 55_[+1]_17 chr6:27741808-27741888 0.00098 11_[+1]_61 chr16:8688305-8688385 0.00098 18_[+1]_54 chr18:67693008-67693088 0.00098 69_[+1]_3 chr11:61055390-61055470 0.00098 27_[+1]_45 chr2:114367617-114367697 0.00098 9_[+1]_63 chr11:17208653-17208733 0.0011 50_[+1]_22 chr4:99608187-99608267 0.0011 [+1]_72 chr17:4152915-4152995 0.0011 71_[+1]_1 chr8:93107683-93107763 0.0011 48_[+1]_24 chr1:160979571-160979651 0.0011 2_[+1]_70 chr7:100627899-100627979 0.0012 23_[+1]_49 chr3:138941046-138941126 0.0013 50_[+1]_22 chr1:224058451-224058531 0.0014 51_[+1]_21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGATAAG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SAGATAAG width=8 seqs=118 chr11:82503057-82503137 ( 71) GAGATAAG 1 chr1:61514692-61514772 ( 5) GAGATAAG 1 chr9:69491644-69491724 ( 24) GAGATAAG 1 chr2:172487754-172487834 ( 62) GAGATAAG 1 chr10:126738228-12673830 ( 33) GAGATAAG 1 chr17:60311560-60311640 ( 2) GAGATAAG 1 chr2:209354100-209354180 ( 22) GAGATAAG 1 chr6:16263861-16263941 ( 70) GAGATAAG 1 chr11:5186203-5186283 ( 70) GAGATAAG 1 chr6:14301847-14301927 ( 48) GAGATAAG 1 chr1:35602541-35602621 ( 73) GAGATAAG 1 chr4:95309247-95309327 ( 57) GAGATAAG 1 chr4:129566585-129566665 ( 45) GAGATAAG 1 chr3:152949176-152949256 ( 58) GAGATAAG 1 chr14:88491094-88491174 ( 62) GAGATAAG 1 chr9:102907623-102907703 ( 49) GAGATAAG 1 chr3:141765756-141765836 ( 43) CAGATAAG 1 chr12:6874582-6874662 ( 17) CAGATAAG 1 chr1:43867883-43867963 ( 42) CAGATAAG 1 chr8:37949392-37949472 ( 47) CAGATAAG 1 chr11:125423023-12542310 ( 28) CAGATAAG 1 chr18:33780475-33780555 ( 61) CAGATAAG 1 chr20:35783271-35783351 ( 46) CAGATAAG 1 chr17:26854439-26854519 ( 46) CAGATAAG 1 chr13:19398955-19399035 ( 36) CAGATAAG 1 chr4:25052494-25052574 ( 46) CAGATAAG 1 chr4:140364943-140365023 ( 51) GAGATAAA 1 chr2:11419654-11419734 ( 33) GAGATAAA 1 chr2:239331045-239331125 ( 67) GAGATAAA 1 chr1:159927656-159927736 ( 46) GAGATAAA 1 chr1:186257581-186257661 ( 45) GAGATAAA 1 chr6:159303120-159303200 ( 58) GAGATAAA 1 chr5:32288439-32288519 ( 15) GAGATAAA 1 chr7:90929388-90929468 ( 63) TAGATAAG 1 chr5:178110919-178110999 ( 6) TAGATAAG 1 chr7:104607699-104607779 ( 14) TAGATAAG 1 chr5:148127224-148127304 ( 32) AAGATAAG 1 chr3:45010054-45010134 ( 35) GAGATAGG 1 chr6:28514942-28515022 ( 64) AAGATAAG 1 chr20:61408502-61408582 ( 5) GAGATAGG 1 chr15:85831588-85831668 ( 71) GAGATAGG 1 chr7:43026534-43026614 ( 15) AAGATAAG 1 chr5:131987933-131988013 ( 40) AAGATAAG 1 chr15:31270678-31270758 ( 32) AAGATAAG 1 chr14:23366708-23366788 ( 21) AAGATAAG 1 chr17:57779792-57779872 ( 46) CAGATAAA 1 chr9:4862958-4863038 ( 48) CAGATAAA 1 chr17:14064894-14064974 ( 71) CAGATAAA 1 chr16:9171962-9172042 ( 37) CAGATAAC 1 chr9:35728616-35728696 ( 72) CAGATAAC 1 chr6:80314407-80314487 ( 15) CAGATAAC 1 chr22:37948834-37948914 ( 68) CAGATAGG 1 chr20:37192565-37192645 ( 23) GAGATTAG 1 chr4:119495641-119495721 ( 27) GAGATTAG 1 chr1:207809088-207809168 ( 68) GAGATTAG 1 chr7:64405499-64405579 ( 9) TAGATAAA 1 chr20:46153255-46153335 ( 26) TAGATAAA 1 chr7:7082258-7082338 ( 20) TAGATAAA 1 chr1:237077132-237077212 ( 7) TAGATAAC 1 chr19:6682880-6682960 ( 15) AAGATAAA 1 chr3:32750354-32750434 ( 29) TAGATAAC 1 chr7:99321012-99321092 ( 6) TAGATAAC 1 chr3:177148581-177148661 ( 70) TAGATAAC 1 chr11:62436662-62436742 ( 69) AAGATAAA 1 chr22:36764666-36764746 ( 30) AAGATAAC 1 chr3:141567995-141568075 ( 62) CTGATAAG 1 chr1:46886055-46886135 ( 24) GAGATAGC 1 chr11:62645218-62645298 ( 68) CTGATAAG 1 chr21:38798147-38798227 ( 42) AAGATAAC 1 chr22:44365548-44365628 ( 58) GAGATAGC 1 chr7:72176117-72176197 ( 31) AAGATAGG 1 chr16:25783258-25783338 ( 21) AAGATAGG 1 chr1:70005892-70005972 ( 51) AAGATAGG 1 chr9:68508377-68508457 ( 33) CAGATAGA 1 chr15:40189573-40189653 ( 44) GAGATTAA 1 chr22:32022692-32022772 ( 54) CAGATAGC 1 chr8:67664918-67664998 ( 69) GAGATTAA 1 chr4:99722492-99722572 ( 40) GAGATTAC 1 chr19:35411435-35411515 ( 11) GAGATATG 1 chr4:71520436-71520516 ( 6) GAGATTAC 1 chr22:21448142-21448222 ( 70) GAGATATG 1 chr1:211495158-211495238 ( 62) GAGATTAC 1 chr5:158555241-158555321 ( 4) GAGATTAC 1 chr11:85862539-85862619 ( 44) TTGATAAG 1 chr1:25739882-25739962 ( 55) TTGATAAG 1 chr19:14502130-14502210 ( 43) GTGATAAC 1 chr4:1884768-1884848 ( 23) TTGATAAG 1 chr19:381054-381134 ( 4) TTGATAAG 1 chr13:95923488-95923568 ( 48) GTGATAGG 1 chr4:103277084-103277164 ( 60) GTGATAGG 1 chr15:57675326-57675406 ( 68) CTGATAAA 1 chr7:107876174-107876254 ( 20) TAGATAGA 1 chr7:103451062-103451142 ( 26) CAGATTAC 1 chr8:30028697-30028777 ( 43) CAGATATG 1 chr7:158628264-158628344 ( 31) TAGATAGA 1 chr8:96280541-96280621 ( 22) CAGATTAC 1 chr2:236982051-236982131 ( 17) TAGATAGC 1 chrX:134996732-134996812 ( 4) CTGATAAC 1 chr20:9129880-9129960 ( 53) CTGATAAC 1 chr4:145061907-145061987 ( 10) CTGATAGG 1 chr4:144940549-144940629 ( 20) CTGATAGG 1 chr16:19499330-19499410 ( 41) GTGATTAG 1 chr2:191049367-191049447 ( 10) GAGATACG 1 chr9:136159297-136159377 ( 43) GAGATACG 1 chr11:58912726-58912806 ( 56) GAGATTGA 1 chr6:27741808-27741888 ( 12) AAGATTAA 1 chr16:8688305-8688385 ( 19) AAGATTAA 1 chr18:67693008-67693088 ( 70) GAGATTGA 1 chr11:61055390-61055470 ( 28) GAGATTGA 1 chr2:114367617-114367697 ( 10) TAGATATG 1 chr11:17208653-17208733 ( 51) GAGATTGC 1 chr4:99608187-99608267 ( 1) GAGAGAAG 1 chr17:4152915-4152995 ( 72) AAGATATG 1 chr8:93107683-93107763 ( 49) GAGAGAAG 1 chr1:160979571-160979651 ( 3) ATGATAAA 1 chr7:100627899-100627979 ( 24) TTGATAGG 1 chr3:138941046-138941126 ( 51) CAGATTGA 1 chr1:224058451-224058531 ( 52) GAGATGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGATAAG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.96686 E= 1.7e-041 -86 11 87 -70 171 -1353 -1353 -86 -1353 -1353 205 -1353 194 -1353 -1353 -1353 -1353 -1353 -383 191 167 -1353 -483 -70 150 -380 -25 -262 -14 -28 123 -1353 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGATAAG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 118 E= 1.7e-041 0.144068 0.254237 0.440678 0.161017 0.855932 0.000000 0.000000 0.144068 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.016949 0.983051 0.830508 0.000000 0.008475 0.161017 0.737288 0.016949 0.203390 0.042373 0.237288 0.194915 0.567797 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGATAAG MEME-1 regular expression -------------------------------------------------------------------------------- [GC]AGATA[AG][GA] -------------------------------------------------------------------------------- Time 4.81 secs. ******************************************************************************** ******************************************************************************** MOTIF STTATCTS MEME-2 width = 8 sites = 102 llr = 757 E-value = 3.4e-046 ******************************************************************************** -------------------------------------------------------------------------------- Motif STTATCTS MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1::a::31 pos.-specific C 42:::a:4 probability G 3::::::3 matrix T 28a:a:71 bits 2.1 * 1.9 **** 1.7 **** 1.5 **** Relative 1.2 ***** Entropy 1.0 ****** (10.7 bits) 0.8 ****** 0.6 ****** 0.4 ****** 0.2 ******** 0.0 -------- Multilevel CTTATCTC consensus G AG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STTATCTS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:110955917-110955997 6 1.59e-05 tgagc cttatctc tccctttccc chr1:151687992-151688072 35 1.59e-05 TACCCAGCTG CTTATCTC CCAAACCAGC chr15:40189573-40189653 54 1.59e-05 GAGATTAAGA CTTATCTC TCAAACACAC chr3:5123728-5123808 38 1.59e-05 aagccttcct cttatctc aactgcaaag chr16:56323878-56323958 65 1.59e-05 taaagccagc cttatctc ctgtagct chr1:211395917-211395997 46 1.59e-05 atgccttcct cttatctc aactgcaaag chr2:174924265-174924345 20 1.59e-05 caaacacttc cttatctc actcttacac chr7:127844653-127844733 16 1.59e-05 ccacccaaat cttatctc gaactgtaat chr9:35004460-35004540 56 1.59e-05 accccaacct cttatctc tgtgccccga chr11:68391348-68391428 60 1.59e-05 gccccgacct cttatctc tgcaccccaa chr9:124553263-124553343 61 1.59e-05 gccccaacct cttatctc tgtgtcccaa chr6:142337949-142338029 60 1.59e-05 accccaacct cttatctc tgcaccccaa chr17:11876220-11876300 69 1.59e-05 gccccaacct cttatctc tgcg chr22:36764666-36764746 59 4.86e-05 GTGGAGGAGT GTTATCTC CCCACCCTTA chr15:73797384-73797464 7 4.86e-05 TTTTTC CTTATCTG CTTGGGAAAC chr15:61913562-61913642 20 4.86e-05 ATTAGCCACA GTTATCTC TCCCATACAG chr18:33262623-33262703 32 4.86e-05 AGCATAACCT CTTATCTG AACTCTCCAG chr19:53664570-53664650 33 4.86e-05 aagcaagttg cttatctg ggctctcaag chr3:125152098-125152178 68 6.53e-05 aagattgtga gttatctg cacag chr2:84178561-84178641 60 6.53e-05 GTCTCAGCAC GTTATCTG TAGCACACAG chrX:47543031-47543111 70 6.53e-05 tgtataagca gttatctg ggt chr12:92798834-92798914 9 6.53e-05 CCTAAAGT GTTATCTG TGGTATCCAC chr20:39679398-39679478 62 6.53e-05 AGACCAGCTT GTTATCTG TCCTAGACAG chr16:73071833-73071913 11 6.53e-05 CAGGCATACG GTTATCTG GGAAGCTGCA chr16:21272944-21273024 6 6.53e-05 ATGCT GTTATCTG AACATGCATG chr5:149861721-149861801 11 9.88e-05 GTCCGTGGAC CTTATCAC ATACAAGGTC chr1:237077132-237077212 48 9.88e-05 gattcaaggc tttatctc ctgtcctcac chr4:99722492-99722572 7 9.88e-05 GTGCCC TTTATCTC AAAGCAAAGT chr7:10774368-10774448 34 9.88e-05 TAAtattacc tttatctc tgcttgcagc chr12:14388196-14388276 25 9.88e-05 tcctttactc tttatctc cagaacccag chr7:77502873-77502953 54 9.88e-05 cagcacaagg tttatctc ttcagacaaa chr17:62971050-62971130 51 9.88e-05 CATGGAAGCT TTTATCTC ACAAGGACAG chr3:195805980-195806060 31 9.88e-05 TTACAAAAAG CTTATCAC TACCACTCCA chr1:25606333-25606413 15 9.88e-05 ACATCCACTT CTTATCAC CCCTGAACAC chr11:124537651-12453773 53 9.88e-05 CTTCTATATC TTTATCTC TTCTAGACAG chr14:35122429-35122509 16 9.88e-05 tcctttactc tttatctc cagagcccag chr3:32115905-32115985 12 9.88e-05 tcctttactc tttatctc cagaacccag chr16:23678660-23678740 30 1.85e-04 GTGCTTACAC CTTATCTA TGAACAGTCA chr6:164767853-164767933 6 1.85e-04 GTCAA TTTATCTG GCCAGGTGGG chr1:224058451-224058531 63 1.85e-04 agatgagcat tttatctg taagcccctg chr14:20645698-20645778 51 1.85e-04 gcaactcatg cttatcta tcttgtgacc chr5:1067959-1068039 64 1.85e-04 CGGGGACCCT GTTATCAC AAGTCCCCG chr6:160992397-160992477 19 1.85e-04 cagtctgtcc cttatcag agctctagtg chr8:30028697-30028777 7 1.85e-04 TGGCTA CTTATCTA GCAGTGGCAG chr11:16626400-16626480 10 1.85e-04 CTGCCACCT TTTATCTG CTCCGAACAC chr9:125209201-125209281 44 1.85e-04 aaggaaatca cttatctt ctaacaataa chr8:95537587-95537667 4 1.85e-04 ctc cttatctt actctcttca chr14:30119949-30120029 48 1.85e-04 gtaacttacg cttatcta ttttgtgacc chr22:44365548-44365628 67 1.85e-04 agagatagca cttatcag gcccac chr8:38068315-38068395 16 1.85e-04 ACACAACAGG CTTATCAG AAACCTACCA chr7:64405499-64405579 50 1.85e-04 ccacacccca cttatcag ctgtgaacat chr2:25479546-25479626 48 1.85e-04 ccttctgtcc cttatctt ctaccccatc chr7:92515493-92515573 9 1.85e-04 tgaagttg cttatcag cttaagaagc chr3:49398905-49398985 43 1.85e-04 TCAAGATTTC CTTATCTT TCAGTTGCCA chr9:68508377-68508457 12 1.85e-04 AAGGAGGGTA GTTATCAC CTAGTCACAG chr17:60311560-60311640 12 1.99e-04 gagataagac cctatctc aaaaaaaaaa chr7:99321012-99321092 69 1.99e-04 ctgacccacc cctatctc cctt chr11:17208653-17208733 6 2.52e-04 taggc gttatcta agtgtacagc chr11:43974055-43974135 2 2.52e-04 t gttatcta tagattccag chr2:202305072-202305152 5 2.52e-04 gcag gttatcag aaCACCCATA chr12:50956904-50956984 11 2.52e-04 GGAGCTGCTG GTTATCTA TTTCCAACAT chr19:45093955-45094035 5 2.52e-04 ttat gttatcta cagattccag chr15:74902916-74902996 49 2.52e-04 GCTTTTGGCT GTTATCTA TCACGACAGG chr6:27741808-27741888 42 2.52e-04 cactggttat gttatcta tagtttccag chr4:99608187-99608267 37 2.52e-04 TGGCTCATGA GTTATCAG CTACTCCACG chr1:70005892-70005972 64 2.52e-04 ATAGGGTCGA GTTATCAG GGAAGACAA chr12:53703882-53703962 60 2.52e-04 TTTCTCTCCA GTTATCTA ACACTCCTCA chr1:28851642-28851722 24 2.52e-04 gcatgcactg gttatcag aacggaacag chr14:102144511-10214459 3 2.52e-04 AT GTTATCTA CATTGAACAG chr5:131649924-131650004 9 2.82e-04 TCACTGGG CCTATCTG GCCTCACCCT chr12:23052379-23052459 48 2.82e-04 tgcaagttcc cctatctg tgcctgcagg chr10:7049682-7049762 18 2.82e-04 TCCTTCCCAT GCTATCTC CTTAGGCCAC chr16:8688305-8688385 45 2.82e-04 CAGGCACCGT GCTATCTC ACTACAGCAT chr14:23366708-23366788 62 2.82e-04 ACATGCCCAT GCTATCTC CCAGGGCCCT chr5:158555241-158555321 24 2.82e-04 AGCCCCTGGG GCTATCTC ATATCTGTGC chr7:5492408-5492488 21 2.82e-04 tctctgcctt gctatctc tgtctccatc chr15:64731368-64731448 66 3.17e-04 ATGAGAACTG TTTATCAC AGAGCAC chr13:44972165-44972245 10 3.17e-04 CGATTAGTC ATTATCTC CTCTGTGGTC chr1:18861042-18861122 40 3.32e-04 tagcagttta gctatctg ccatttccag chr5:148018807-148018887 47 4.42e-04 atccaaattc cttatcat agctaaccag chr1:65696956-65697036 21 4.42e-04 AATAAATGCC ATTATCTG TATGTTTCAG chr17:65852220-65852300 34 4.42e-04 ttctgacttt cttatcat ttctctccag chr11:85859527-85859607 20 4.42e-04 TTGAGATTAT TTTATCAG CAGTAAACTG chr1:191793096-191793176 46 4.42e-04 AACAATGCCA TTTATCAG CTTAGGCAAG chr1:159927656-159927736 17 4.42e-04 ATACCgttag attatctg agaagcagaa chr10:13457785-13457865 26 4.42e-04 GCCCAGCTTA TTTATCTT GTGAGCTTCA chr12:67314157-67314237 49 4.72e-04 acacatgcct tctatctc cttcaagcag chr1:61514692-61514772 16 5.09e-04 AGATAAGCTA GTTATCAA AACTCCCCAT chr19:14502130-14502210 51 5.09e-04 ATGTGATAAC GTTAtcat gcttgtaatt chr1:95100701-95100781 25 5.09e-04 GGAGCAGCTG GTTATCAT GAACCATGTA chr4:68418034-68418114 49 5.86e-04 ttttagcttc cctatctt agtgcacctg chr2:128300697-128300777 61 5.86e-04 catatctcag gctatcac atggggagaa chr20:33780337-33780417 29 5.86e-04 ttttagcttc cctatctt agtgcacctg chr2:236982051-236982131 50 5.86e-04 TTACATTTGC CCTATcag cttgcaaaac chr6:21102042-21102122 39 5.86e-04 tctctgtact cctatcta atcagttacc chr1:160919157-160919237 63 5.86e-04 catatctcag gctatcac atggggagaa chr9:35728616-35728696 27 7.48e-04 TCACGACTGC ATTATCTT CTCCTAGGGA chr7:128790239-128790319 1 7.48e-04 . ATTATCAG CTGCTCCCCC chr1:52541461-52541541 70 7.48e-04 gagacggggt tttatcat gtt chr7:104607699-104607779 46 7.48e-04 GGTTCAGTTG ATTATCAG TATCTTCAGG chr2:240008158-240008238 64 7.79e-04 TGTGGATCTG ACTATCTC TCACGTACA chr2:11419654-11419734 73 8.79e-04 ttgacactgc tctatcag -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STTATCTS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:110955917-110955997 1.6e-05 5_[+2]_67 chr1:151687992-151688072 1.6e-05 34_[+2]_38 chr15:40189573-40189653 1.6e-05 53_[+2]_19 chr3:5123728-5123808 1.6e-05 37_[+2]_35 chr16:56323878-56323958 1.6e-05 64_[+2]_8 chr1:211395917-211395997 1.6e-05 45_[+2]_27 chr2:174924265-174924345 1.6e-05 19_[+2]_53 chr7:127844653-127844733 1.6e-05 15_[+2]_57 chr9:35004460-35004540 1.6e-05 55_[+2]_17 chr11:68391348-68391428 1.6e-05 59_[+2]_13 chr9:124553263-124553343 1.6e-05 60_[+2]_12 chr6:142337949-142338029 1.6e-05 59_[+2]_13 chr17:11876220-11876300 1.6e-05 68_[+2]_4 chr22:36764666-36764746 4.9e-05 58_[+2]_14 chr15:73797384-73797464 4.9e-05 6_[+2]_66 chr15:61913562-61913642 4.9e-05 19_[+2]_53 chr18:33262623-33262703 4.9e-05 31_[+2]_41 chr19:53664570-53664650 4.9e-05 32_[+2]_40 chr3:125152098-125152178 6.5e-05 67_[+2]_5 chr2:84178561-84178641 6.5e-05 59_[+2]_13 chrX:47543031-47543111 6.5e-05 69_[+2]_3 chr12:92798834-92798914 6.5e-05 8_[+2]_64 chr20:39679398-39679478 6.5e-05 61_[+2]_11 chr16:73071833-73071913 6.5e-05 10_[+2]_62 chr16:21272944-21273024 6.5e-05 5_[+2]_67 chr5:149861721-149861801 9.9e-05 10_[+2]_62 chr1:237077132-237077212 9.9e-05 47_[+2]_25 chr4:99722492-99722572 9.9e-05 6_[+2]_66 chr7:10774368-10774448 9.9e-05 33_[+2]_39 chr12:14388196-14388276 9.9e-05 24_[+2]_48 chr7:77502873-77502953 9.9e-05 53_[+2]_19 chr17:62971050-62971130 9.9e-05 50_[+2]_22 chr3:195805980-195806060 9.9e-05 30_[+2]_42 chr1:25606333-25606413 9.9e-05 14_[+2]_58 chr11:124537651-12453773 9.9e-05 52_[+2]_20 chr14:35122429-35122509 9.9e-05 15_[+2]_57 chr3:32115905-32115985 9.9e-05 11_[+2]_61 chr16:23678660-23678740 0.00018 29_[+2]_43 chr6:164767853-164767933 0.00018 5_[+2]_67 chr1:224058451-224058531 0.00018 62_[+2]_10 chr14:20645698-20645778 0.00018 50_[+2]_22 chr5:1067959-1068039 0.00018 63_[+2]_9 chr6:160992397-160992477 0.00018 18_[+2]_54 chr8:30028697-30028777 0.00018 6_[+2]_66 chr11:16626400-16626480 0.00018 9_[+2]_63 chr9:125209201-125209281 0.00018 43_[+2]_29 chr8:95537587-95537667 0.00018 3_[+2]_69 chr14:30119949-30120029 0.00018 47_[+2]_25 chr22:44365548-44365628 0.00018 66_[+2]_6 chr8:38068315-38068395 0.00018 15_[+2]_57 chr7:64405499-64405579 0.00018 49_[+2]_23 chr2:25479546-25479626 0.00018 47_[+2]_25 chr7:92515493-92515573 0.00018 8_[+2]_64 chr3:49398905-49398985 0.00018 42_[+2]_30 chr9:68508377-68508457 0.00018 11_[+2]_61 chr17:60311560-60311640 0.0002 11_[+2]_61 chr7:99321012-99321092 0.0002 68_[+2]_4 chr11:17208653-17208733 0.00025 5_[+2]_67 chr11:43974055-43974135 0.00025 1_[+2]_71 chr2:202305072-202305152 0.00025 4_[+2]_68 chr12:50956904-50956984 0.00025 10_[+2]_62 chr19:45093955-45094035 0.00025 4_[+2]_68 chr15:74902916-74902996 0.00025 48_[+2]_24 chr6:27741808-27741888 0.00025 41_[+2]_31 chr4:99608187-99608267 0.00025 36_[+2]_36 chr1:70005892-70005972 0.00025 63_[+2]_9 chr12:53703882-53703962 0.00025 59_[+2]_13 chr1:28851642-28851722 0.00025 23_[+2]_49 chr14:102144511-10214459 0.00025 2_[+2]_70 chr5:131649924-131650004 0.00028 8_[+2]_64 chr12:23052379-23052459 0.00028 47_[+2]_25 chr10:7049682-7049762 0.00028 17_[+2]_55 chr16:8688305-8688385 0.00028 44_[+2]_28 chr14:23366708-23366788 0.00028 61_[+2]_11 chr5:158555241-158555321 0.00028 23_[+2]_49 chr7:5492408-5492488 0.00028 20_[+2]_52 chr15:64731368-64731448 0.00032 65_[+2]_7 chr13:44972165-44972245 0.00032 9_[+2]_63 chr1:18861042-18861122 0.00033 39_[+2]_33 chr5:148018807-148018887 0.00044 46_[+2]_26 chr1:65696956-65697036 0.00044 20_[+2]_52 chr17:65852220-65852300 0.00044 33_[+2]_39 chr11:85859527-85859607 0.00044 19_[+2]_53 chr1:191793096-191793176 0.00044 45_[+2]_27 chr1:159927656-159927736 0.00044 16_[+2]_56 chr10:13457785-13457865 0.00044 25_[+2]_47 chr12:67314157-67314237 0.00047 48_[+2]_24 chr1:61514692-61514772 0.00051 15_[+2]_57 chr19:14502130-14502210 0.00051 50_[+2]_22 chr1:95100701-95100781 0.00051 24_[+2]_48 chr4:68418034-68418114 0.00059 48_[+2]_24 chr2:128300697-128300777 0.00059 60_[+2]_12 chr20:33780337-33780417 0.00059 28_[+2]_44 chr2:236982051-236982131 0.00059 49_[+2]_23 chr6:21102042-21102122 0.00059 38_[+2]_34 chr1:160919157-160919237 0.00059 62_[+2]_10 chr9:35728616-35728696 0.00075 26_[+2]_46 chr7:128790239-128790319 0.00075 [+2]_72 chr1:52541461-52541541 0.00075 69_[+2]_3 chr7:104607699-104607779 0.00075 45_[+2]_27 chr2:240008158-240008238 0.00078 63_[+2]_9 chr2:11419654-11419734 0.00088 72_[+2] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STTATCTS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF STTATCTS width=8 seqs=102 chr1:110955917-110955997 ( 6) CTTATCTC 1 chr1:151687992-151688072 ( 35) CTTATCTC 1 chr15:40189573-40189653 ( 54) CTTATCTC 1 chr3:5123728-5123808 ( 38) CTTATCTC 1 chr16:56323878-56323958 ( 65) CTTATCTC 1 chr1:211395917-211395997 ( 46) CTTATCTC 1 chr2:174924265-174924345 ( 20) CTTATCTC 1 chr7:127844653-127844733 ( 16) CTTATCTC 1 chr9:35004460-35004540 ( 56) CTTATCTC 1 chr11:68391348-68391428 ( 60) CTTATCTC 1 chr9:124553263-124553343 ( 61) CTTATCTC 1 chr6:142337949-142338029 ( 60) CTTATCTC 1 chr17:11876220-11876300 ( 69) CTTATCTC 1 chr22:36764666-36764746 ( 59) GTTATCTC 1 chr15:73797384-73797464 ( 7) CTTATCTG 1 chr15:61913562-61913642 ( 20) GTTATCTC 1 chr18:33262623-33262703 ( 32) CTTATCTG 1 chr19:53664570-53664650 ( 33) CTTATCTG 1 chr3:125152098-125152178 ( 68) GTTATCTG 1 chr2:84178561-84178641 ( 60) GTTATCTG 1 chrX:47543031-47543111 ( 70) GTTATCTG 1 chr12:92798834-92798914 ( 9) GTTATCTG 1 chr20:39679398-39679478 ( 62) GTTATCTG 1 chr16:73071833-73071913 ( 11) GTTATCTG 1 chr16:21272944-21273024 ( 6) GTTATCTG 1 chr5:149861721-149861801 ( 11) CTTATCAC 1 chr1:237077132-237077212 ( 48) TTTATCTC 1 chr4:99722492-99722572 ( 7) TTTATCTC 1 chr7:10774368-10774448 ( 34) TTTATCTC 1 chr12:14388196-14388276 ( 25) TTTATCTC 1 chr7:77502873-77502953 ( 54) TTTATCTC 1 chr17:62971050-62971130 ( 51) TTTATCTC 1 chr3:195805980-195806060 ( 31) CTTATCAC 1 chr1:25606333-25606413 ( 15) CTTATCAC 1 chr11:124537651-12453773 ( 53) TTTATCTC 1 chr14:35122429-35122509 ( 16) TTTATCTC 1 chr3:32115905-32115985 ( 12) TTTATCTC 1 chr16:23678660-23678740 ( 30) CTTATCTA 1 chr6:164767853-164767933 ( 6) TTTATCTG 1 chr1:224058451-224058531 ( 63) TTTATCTG 1 chr14:20645698-20645778 ( 51) CTTATCTA 1 chr5:1067959-1068039 ( 64) GTTATCAC 1 chr6:160992397-160992477 ( 19) CTTATCAG 1 chr8:30028697-30028777 ( 7) CTTATCTA 1 chr11:16626400-16626480 ( 10) TTTATCTG 1 chr9:125209201-125209281 ( 44) CTTATCTT 1 chr8:95537587-95537667 ( 4) CTTATCTT 1 chr14:30119949-30120029 ( 48) CTTATCTA 1 chr22:44365548-44365628 ( 67) CTTATCAG 1 chr8:38068315-38068395 ( 16) CTTATCAG 1 chr7:64405499-64405579 ( 50) CTTATCAG 1 chr2:25479546-25479626 ( 48) CTTATCTT 1 chr7:92515493-92515573 ( 9) CTTATCAG 1 chr3:49398905-49398985 ( 43) CTTATCTT 1 chr9:68508377-68508457 ( 12) GTTATCAC 1 chr17:60311560-60311640 ( 12) CCTATCTC 1 chr7:99321012-99321092 ( 69) CCTATCTC 1 chr11:17208653-17208733 ( 6) GTTATCTA 1 chr11:43974055-43974135 ( 2) GTTATCTA 1 chr2:202305072-202305152 ( 5) GTTATCAG 1 chr12:50956904-50956984 ( 11) GTTATCTA 1 chr19:45093955-45094035 ( 5) GTTATCTA 1 chr15:74902916-74902996 ( 49) GTTATCTA 1 chr6:27741808-27741888 ( 42) GTTATCTA 1 chr4:99608187-99608267 ( 37) GTTATCAG 1 chr1:70005892-70005972 ( 64) GTTATCAG 1 chr12:53703882-53703962 ( 60) GTTATCTA 1 chr1:28851642-28851722 ( 24) GTTATCAG 1 chr14:102144511-10214459 ( 3) GTTATCTA 1 chr5:131649924-131650004 ( 9) CCTATCTG 1 chr12:23052379-23052459 ( 48) CCTATCTG 1 chr10:7049682-7049762 ( 18) GCTATCTC 1 chr16:8688305-8688385 ( 45) GCTATCTC 1 chr14:23366708-23366788 ( 62) GCTATCTC 1 chr5:158555241-158555321 ( 24) GCTATCTC 1 chr7:5492408-5492488 ( 21) GCTATCTC 1 chr15:64731368-64731448 ( 66) TTTATCAC 1 chr13:44972165-44972245 ( 10) ATTATCTC 1 chr1:18861042-18861122 ( 40) GCTATCTG 1 chr5:148018807-148018887 ( 47) CTTATCAT 1 chr1:65696956-65697036 ( 21) ATTATCTG 1 chr17:65852220-65852300 ( 34) CTTATCAT 1 chr11:85859527-85859607 ( 20) TTTATCAG 1 chr1:191793096-191793176 ( 46) TTTATCAG 1 chr1:159927656-159927736 ( 17) ATTATCTG 1 chr10:13457785-13457865 ( 26) TTTATCTT 1 chr12:67314157-67314237 ( 49) TCTATCTC 1 chr1:61514692-61514772 ( 16) GTTATCAA 1 chr19:14502130-14502210 ( 51) GTTATCAT 1 chr1:95100701-95100781 ( 25) GTTATCAT 1 chr4:68418034-68418114 ( 49) CCTATCTT 1 chr2:128300697-128300777 ( 61) GCTATCAC 1 chr20:33780337-33780417 ( 29) CCTATCTT 1 chr2:236982051-236982131 ( 50) CCTATCAG 1 chr6:21102042-21102122 ( 39) CCTATCTA 1 chr1:160919157-160919237 ( 63) GCTATCAC 1 chr9:35728616-35728696 ( 27) ATTATCTT 1 chr7:128790239-128790319 ( 1) ATTATCAG 1 chr1:52541461-52541541 ( 70) TTTATCAT 1 chr7:104607699-104607779 ( 46) ATTATCAG 1 chr2:240008158-240008238 ( 64) ACTATCTC 1 chr2:11419654-11419734 ( 73) TCTATCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STTATCTS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.09987 E= 3.4e-046 -193 80 46 -49 -1332 -34 -1332 164 -1332 -1332 -1332 194 194 -1332 -1332 -1332 -1332 -1332 -1332 194 -1332 208 -1332 -1332 12 -1332 -1332 145 -93 80 42 -104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STTATCTS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 102 E= 3.4e-046 0.068627 0.411765 0.333333 0.186275 0.000000 0.186275 0.000000 0.813725 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.284314 0.000000 0.000000 0.715686 0.137255 0.411765 0.323529 0.127451 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STTATCTS MEME-2 regular expression -------------------------------------------------------------------------------- [CG]TTATC[TA][CG] -------------------------------------------------------------------------------- Time 8.30 secs. ******************************************************************************** ******************************************************************************** MOTIF CACACMMA MEME-3 width = 8 sites = 35 llr = 287 E-value = 1.1e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACACMMA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :a:8:537 pos.-specific C a:a2a463 probability G ::::::1: matrix T :::::1:: bits 2.1 * * * 1.9 *** * 1.7 *** * 1.5 *** * Relative 1.2 ***** Entropy 1.0 ***** * (11.8 bits) 0.8 ***** * 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACACACA consensus C CAC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACMMA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:153163517-153163597 69 1.44e-05 cacaatctgc cacaCaca ccag chr12:14388196-14388276 44 1.44e-05 agaacccagc cacacaca ttaccaaaca chr1:151687992-151688072 9 1.44e-05 CACACGCA CACACACA CACACCCCTA chr15:40189573-40189653 67 1.44e-05 ATCTCTCAAA CACACACA TTAAGG chr12:67314157-67314237 36 1.44e-05 tgattatatc cacacaca tgccttctat chr6:80314407-80314487 72 1.44e-05 cacatctgag cacacaca g chr14:35122429-35122509 35 1.44e-05 agagcccagc cacacaca ttaccaaaca chr3:32115905-32115985 31 1.44e-05 agaacccagc cacacaca ttaccaaaca chr1:52541461-52541541 29 2.74e-05 caggcgccac cacaccca gctaattttt chr3:98302749-98302829 38 5.63e-05 GAAGAACAGT CACACACC ATACCATAGA chr12:108879336-10887941 25 5.63e-05 tccccatgtg cacacaaa ggaaagacca chr20:39679398-39679478 2 8.25e-05 A CACACCCC TGATATTTAC chr19:53664570-53664650 17 8.25e-05 tcaaccataa cacaccaa gcaagttgct chr11:16626400-16626480 25 8.25e-05 CTGCTCCGAA CACACCAA TTCTTTTTAT chr16:73071833-73071913 27 8.25e-05 TGGGAAGCTG CACACCAA CTTTTAAAAT chr7:64405499-64405579 41 8.25e-05 cctcctctcc cacacccc acttatcagc chr6:142337949-142338029 47 8.25e-05 cccttatttc cacacccc aacctcttat chr17:11876220-11876300 14 8.25e-05 cccttatttc cacacccc aacctcttat chr18:33262623-33262703 69 9.55e-05 TGATTTCATA CACCCACA TACT chr2:191136665-191136745 10 9.55e-05 ttatcttct CACCCaca cactgtcgtt chr5:139990838-139990918 54 1.22e-04 tcactcccgc caccccca gtctgctttt chr7:107876174-107876254 72 1.22e-04 aggacaattc cacacaac a chr8:38068315-38068395 5 1.22e-04 ACTT CACACAAC AGGCTTATCA chr9:35728616-35728696 4 1.49e-04 CCC CACACAGA TCCCATCACG chr2:84178561-84178641 71 1.49e-04 TTATCTGTAG CACACAGA CC chr3:177148581-177148661 35 1.49e-04 AAGTGGCTTT CACACCAC CATGTAGGAT chr7:127844653-127844733 7 1.76e-04 gtgtcc cacccaaa tcttatctcg chr7:90929388-90929468 14 2.03e-04 atcacatgtc cacactca ttccatctgc chr4:69730322-69730402 46 2.03e-04 tctttctgga cacactca ggtaaaggaa chr9:35004460-35004540 45 2.27e-04 cttatttccg caccccaa cctcttatct chr11:68391348-68391428 70 2.27e-04 cttatctctg caccccaa ccc chr4:32003782-32003862 54 2.40e-04 ATATCTAGTG CACACAGC TTCTAAATAA chr2:25479546-25479626 71 2.94e-04 ccatccctgc cacactcc cc chr22:37948834-37948914 2 3.20e-04 G CACCCAGA CATCACCTCG chr16:10591148-10591228 10 3.20e-04 cctggtgac caccccac catgggatag -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACMMA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:153163517-153163597 1.4e-05 68_[+3]_4 chr12:14388196-14388276 1.4e-05 43_[+3]_29 chr1:151687992-151688072 1.4e-05 8_[+3]_64 chr15:40189573-40189653 1.4e-05 66_[+3]_6 chr12:67314157-67314237 1.4e-05 35_[+3]_37 chr6:80314407-80314487 1.4e-05 71_[+3]_1 chr14:35122429-35122509 1.4e-05 34_[+3]_38 chr3:32115905-32115985 1.4e-05 30_[+3]_42 chr1:52541461-52541541 2.7e-05 28_[+3]_44 chr3:98302749-98302829 5.6e-05 37_[+3]_35 chr12:108879336-10887941 5.6e-05 24_[+3]_48 chr20:39679398-39679478 8.3e-05 1_[+3]_71 chr19:53664570-53664650 8.3e-05 16_[+3]_56 chr11:16626400-16626480 8.3e-05 24_[+3]_48 chr16:73071833-73071913 8.3e-05 26_[+3]_46 chr7:64405499-64405579 8.3e-05 40_[+3]_32 chr6:142337949-142338029 8.3e-05 46_[+3]_26 chr17:11876220-11876300 8.3e-05 13_[+3]_59 chr18:33262623-33262703 9.6e-05 68_[+3]_4 chr2:191136665-191136745 9.6e-05 9_[+3]_63 chr5:139990838-139990918 0.00012 53_[+3]_19 chr7:107876174-107876254 0.00012 71_[+3]_1 chr8:38068315-38068395 0.00012 4_[+3]_68 chr9:35728616-35728696 0.00015 3_[+3]_69 chr2:84178561-84178641 0.00015 70_[+3]_2 chr3:177148581-177148661 0.00015 34_[+3]_38 chr7:127844653-127844733 0.00018 6_[+3]_66 chr7:90929388-90929468 0.0002 13_[+3]_59 chr4:69730322-69730402 0.0002 45_[+3]_27 chr9:35004460-35004540 0.00023 44_[+3]_28 chr11:68391348-68391428 0.00023 69_[+3]_3 chr4:32003782-32003862 0.00024 53_[+3]_19 chr2:25479546-25479626 0.00029 70_[+3]_2 chr22:37948834-37948914 0.00032 1_[+3]_71 chr16:10591148-10591228 0.00032 9_[+3]_63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACMMA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACACMMA width=8 seqs=35 chrX:153163517-153163597 ( 69) CACACACA 1 chr12:14388196-14388276 ( 44) CACACACA 1 chr1:151687992-151688072 ( 9) CACACACA 1 chr15:40189573-40189653 ( 67) CACACACA 1 chr12:67314157-67314237 ( 36) CACACACA 1 chr6:80314407-80314487 ( 72) CACACACA 1 chr14:35122429-35122509 ( 35) CACACACA 1 chr3:32115905-32115985 ( 31) CACACACA 1 chr1:52541461-52541541 ( 29) CACACCCA 1 chr3:98302749-98302829 ( 38) CACACACC 1 chr12:108879336-10887941 ( 25) CACACAAA 1 chr20:39679398-39679478 ( 2) CACACCCC 1 chr19:53664570-53664650 ( 17) CACACCAA 1 chr11:16626400-16626480 ( 25) CACACCAA 1 chr16:73071833-73071913 ( 27) CACACCAA 1 chr7:64405499-64405579 ( 41) CACACCCC 1 chr6:142337949-142338029 ( 47) CACACCCC 1 chr17:11876220-11876300 ( 14) CACACCCC 1 chr18:33262623-33262703 ( 69) CACCCACA 1 chr2:191136665-191136745 ( 10) CACCCACA 1 chr5:139990838-139990918 ( 54) CACCCCCA 1 chr7:107876174-107876254 ( 72) CACACAAC 1 chr8:38068315-38068395 ( 5) CACACAAC 1 chr9:35728616-35728696 ( 4) CACACAGA 1 chr2:84178561-84178641 ( 71) CACACAGA 1 chr3:177148581-177148661 ( 35) CACACCAC 1 chr7:127844653-127844733 ( 7) CACCCAAA 1 chr7:90929388-90929468 ( 14) CACACTCA 1 chr4:69730322-69730402 ( 46) CACACTCA 1 chr9:35004460-35004540 ( 45) CACCCCAA 1 chr11:68391348-68391428 ( 70) CACCCCAA 1 chr4:32003782-32003862 ( 54) CACACAGC 1 chr2:25479546-25479626 ( 71) CACACTCC 1 chr22:37948834-37948914 ( 2) CACCCAGA 1 chr16:10591148-10591228 ( 10) CACCCCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACMMA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8043 E= 1.1e+000 -1177 208 -1177 -1177 194 -1177 -1177 -1177 -1177 208 -1177 -1177 156 -5 -1177 -1177 -1177 208 -1177 -1177 106 65 -1177 -161 27 128 -108 -1177 139 41 -1177 -1177 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACMMA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 1.1e+000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.771429 0.228571 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.542857 0.371429 0.000000 0.085714 0.314286 0.571429 0.114286 0.000000 0.685714 0.314286 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACMMA MEME-3 regular expression -------------------------------------------------------------------------------- CAC[AC]C[AC][CA][AC] -------------------------------------------------------------------------------- Time 11.64 secs. ******************************************************************************** ******************************************************************************** MOTIF AGCAGCTG MEME-4 width = 8 sites = 46 llr = 349 E-value = 4.8e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGCAGCTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A 5219:2:: pos.-specific C :29::6:: probability G 37::a2:a matrix T 2::1::a: bits 2.1 * 1.9 * ** 1.7 *** ** 1.5 *** ** Relative 1.2 *** ** Entropy 1.0 *** ** (11.0 bits) 0.8 **** ** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGCAGCTG consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCAGCTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr22:37948834-37948914 53 1.40e-05 AGGGACGAAG AGCAGCTG GGTGACACAG chr7:128790239-128790319 31 1.40e-05 GGGAACCACA AGCAGCTG CTTCCCATCT chr12:67314157-67314237 62 1.40e-05 atctccttca agcagctg gatgttgtga chr7:99659255-99659335 67 1.40e-05 TGAGCCTGGA AGCAGCTG ATAGTC chr1:25606333-25606413 59 1.40e-05 TTATCAAACC AGCAGCTG ATGTGAGTGC chr1:95100701-95100781 17 1.40e-05 GGGAGCGGGG AGCAGCTG GTTATCATGA chr2:239331045-239331125 47 2.70e-05 CAGCTCCTCC GGCAGCTG CAGTCAGGTG chr14:36733970-36734050 63 2.70e-05 cgatacaggt ggcagctg atgtttcaac chr5:32288439-32288519 62 2.70e-05 cctcccctga ggcagctg ccaggcaaga chr8:30892376-30892456 65 5.55e-05 gagcccatat agcaggtg ggctttaa chr1:110955917-110955997 55 5.55e-05 tctctagctg tgcagctg caaggtcact chrX:47543031-47543111 50 5.55e-05 ggtggtcacc agcaggtg attgtataag chr14:20645698-20645778 70 5.55e-05 cttgtgacct tgcagctg cac chr3:14162501-14162581 38 5.55e-05 tacatctttc tgcagctg caggcatatc chr14:30119949-30120029 67 5.55e-05 tttgtgacct tgcagctg cacagc chr11:62645218-62645298 56 5.55e-05 gtgcctgtga agcaggtg gtggctgata chr17:49243392-49243472 36 7.10e-05 TGGTGAAAGC AGCAGATG GCCTTGACCG chr9:130188242-130188322 27 7.10e-05 gggaaagcag agcagatg ggtcgtcatc chr13:44972165-44972245 48 7.10e-05 CTTAGCACAG AGCAGATG TCCCAGGCCT chr19:381054-381134 46 7.10e-05 CGTGGTGATG AGCAGATG TAGGAGGTGG chr2:114367617-114367697 35 8.47e-05 atcgtgtttg accagctg tgtgtgtctc chrX:134996732-134996812 18 1.13e-04 taactctgca ggcaggtg tcatataaga chr3:125152098-125152178 28 1.42e-04 tgagctaact tgcaggtg tctggtgata chr2:218706961-218707041 55 1.70e-04 atccaaccac tgcagatg tttcatggtc chr13:95923488-95923568 15 1.84e-04 TGAATACAGA GACAGCTG CCGACGGATT chr2:84178561-84178641 16 1.84e-04 CTGCCTCTCT GACAGCTG TCTCTCTCAT chr15:74902916-74902996 68 2.12e-04 CACGACAGGC TCCAGCTG TGCAT chr17:14064894-14064974 44 2.12e-04 gtgggtaaca tccagctg gctggaggct chr11:17208653-17208733 18 2.43e-04 tatctaagtg tacagctg aagacctaaa chr14:102144511-10214459 16 2.43e-04 ATCTACATTG AACAGGTG CAGCGGGAAA chr12:50956904-50956984 3 2.72e-04 GG AGCTGCTG GTTATCTATT chr1:25739882-25739962 45 2.72e-04 CACTCACATC AGCTGCTG GTTTGATAAG chr8:38068315-38068395 30 2.72e-04 TCAGAAACCT ACCAGATG AAACTGGATA chr12:14388196-14388276 58 3.04e-04 cacattacca aacagatg ggagcattcc chr3:98302749-98302829 15 3.04e-04 GGAGGCAGAA AGAAGCTG TCTTTGAAGA chr2:217957621-217957701 63 3.04e-04 gcccagagcc agaaGCTG CTTGCAGGCT chr14:35122429-35122509 49 3.04e-04 cacattacca aacagatg ggagcattct chr3:32115905-32115985 45 3.04e-04 cacattacca aacagatg ggagcattcc chr12:6874582-6874662 2 3.17e-04 G GCCAGGTG CCTGACTCAG chr6:164767853-164767933 14 3.17e-04 AATTTATCTG GCCAGGTG GGGGAGCACA chr8:67664918-67664998 22 3.17e-04 GCTAAAGGGG GCCAGGTG CTTATCCACA chr7:100627899-100627979 8 3.47e-04 tctagcc agcatctg ccttttgatt chr16:73071833-73071913 19 4.18e-04 CGGTTATCTG GGAAGCTG CACACCAACT chr11:125423023-12542310 1 4.77e-04 . agctggtg gtgtggttgg chr9:69491644-69491724 37 5.86e-04 ataagaggaa ggcatctg tctcctgctg chr9:4862958-4863038 11 7.49e-04 CTGAGTTAAC GGCAGCAG TTGTTCAATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCAGCTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:37948834-37948914 1.4e-05 52_[+4]_20 chr7:128790239-128790319 1.4e-05 30_[+4]_42 chr12:67314157-67314237 1.4e-05 61_[+4]_11 chr7:99659255-99659335 1.4e-05 66_[+4]_6 chr1:25606333-25606413 1.4e-05 58_[+4]_14 chr1:95100701-95100781 1.4e-05 16_[+4]_56 chr2:239331045-239331125 2.7e-05 46_[+4]_26 chr14:36733970-36734050 2.7e-05 62_[+4]_10 chr5:32288439-32288519 2.7e-05 61_[+4]_11 chr8:30892376-30892456 5.5e-05 64_[+4]_8 chr1:110955917-110955997 5.5e-05 54_[+4]_18 chrX:47543031-47543111 5.5e-05 49_[+4]_23 chr14:20645698-20645778 5.5e-05 69_[+4]_3 chr3:14162501-14162581 5.5e-05 37_[+4]_35 chr14:30119949-30120029 5.5e-05 66_[+4]_6 chr11:62645218-62645298 5.5e-05 55_[+4]_17 chr17:49243392-49243472 7.1e-05 35_[+4]_37 chr9:130188242-130188322 7.1e-05 26_[+4]_46 chr13:44972165-44972245 7.1e-05 47_[+4]_25 chr19:381054-381134 7.1e-05 45_[+4]_27 chr2:114367617-114367697 8.5e-05 34_[+4]_38 chrX:134996732-134996812 0.00011 17_[+4]_55 chr3:125152098-125152178 0.00014 27_[+4]_45 chr2:218706961-218707041 0.00017 54_[+4]_18 chr13:95923488-95923568 0.00018 14_[+4]_58 chr2:84178561-84178641 0.00018 15_[+4]_57 chr15:74902916-74902996 0.00021 67_[+4]_5 chr17:14064894-14064974 0.00021 43_[+4]_29 chr11:17208653-17208733 0.00024 17_[+4]_55 chr14:102144511-10214459 0.00024 15_[+4]_57 chr12:50956904-50956984 0.00027 2_[+4]_70 chr1:25739882-25739962 0.00027 44_[+4]_28 chr8:38068315-38068395 0.00027 29_[+4]_43 chr12:14388196-14388276 0.0003 57_[+4]_15 chr3:98302749-98302829 0.0003 14_[+4]_58 chr2:217957621-217957701 0.0003 62_[+4]_10 chr14:35122429-35122509 0.0003 48_[+4]_24 chr3:32115905-32115985 0.0003 44_[+4]_28 chr12:6874582-6874662 0.00032 1_[+4]_71 chr6:164767853-164767933 0.00032 13_[+4]_59 chr8:67664918-67664998 0.00032 21_[+4]_51 chr7:100627899-100627979 0.00035 7_[+4]_65 chr16:73071833-73071913 0.00042 18_[+4]_54 chr11:125423023-12542310 0.00048 [+4]_72 chr9:69491644-69491724 0.00059 36_[+4]_36 chr9:4862958-4863038 0.00075 10_[+4]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCAGCTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGCAGCTG width=8 seqs=46 chr22:37948834-37948914 ( 53) AGCAGCTG 1 chr7:128790239-128790319 ( 31) AGCAGCTG 1 chr12:67314157-67314237 ( 62) AGCAGCTG 1 chr7:99659255-99659335 ( 67) AGCAGCTG 1 chr1:25606333-25606413 ( 59) AGCAGCTG 1 chr1:95100701-95100781 ( 17) AGCAGCTG 1 chr2:239331045-239331125 ( 47) GGCAGCTG 1 chr14:36733970-36734050 ( 63) GGCAGCTG 1 chr5:32288439-32288519 ( 62) GGCAGCTG 1 chr8:30892376-30892456 ( 65) AGCAGGTG 1 chr1:110955917-110955997 ( 55) TGCAGCTG 1 chrX:47543031-47543111 ( 50) AGCAGGTG 1 chr14:20645698-20645778 ( 70) TGCAGCTG 1 chr3:14162501-14162581 ( 38) TGCAGCTG 1 chr14:30119949-30120029 ( 67) TGCAGCTG 1 chr11:62645218-62645298 ( 56) AGCAGGTG 1 chr17:49243392-49243472 ( 36) AGCAGATG 1 chr9:130188242-130188322 ( 27) AGCAGATG 1 chr13:44972165-44972245 ( 48) AGCAGATG 1 chr19:381054-381134 ( 46) AGCAGATG 1 chr2:114367617-114367697 ( 35) ACCAGCTG 1 chrX:134996732-134996812 ( 18) GGCAGGTG 1 chr3:125152098-125152178 ( 28) TGCAGGTG 1 chr2:218706961-218707041 ( 55) TGCAGATG 1 chr13:95923488-95923568 ( 15) GACAGCTG 1 chr2:84178561-84178641 ( 16) GACAGCTG 1 chr15:74902916-74902996 ( 68) TCCAGCTG 1 chr17:14064894-14064974 ( 44) TCCAGCTG 1 chr11:17208653-17208733 ( 18) TACAGCTG 1 chr14:102144511-10214459 ( 16) AACAGGTG 1 chr12:50956904-50956984 ( 3) AGCTGCTG 1 chr1:25739882-25739962 ( 45) AGCTGCTG 1 chr8:38068315-38068395 ( 30) ACCAGATG 1 chr12:14388196-14388276 ( 58) AACAGATG 1 chr3:98302749-98302829 ( 15) AGAAGCTG 1 chr2:217957621-217957701 ( 63) AGAAGCTG 1 chr14:35122429-35122509 ( 49) AACAGATG 1 chr3:32115905-32115985 ( 45) AACAGATG 1 chr12:6874582-6874662 ( 2) GCCAGGTG 1 chr6:164767853-164767933 ( 14) GCCAGGTG 1 chr8:67664918-67664998 ( 22) GCCAGGTG 1 chr7:100627899-100627979 ( 8) AGCATCTG 1 chr16:73071833-73071913 ( 19) GGAAGCTG 1 chr11:125423023-12542310 ( 1) AGCTGGTG 1 chr9:69491644-69491724 ( 37) GGCATCTG 1 chr9:4862958-4863038 ( 11) GGCAGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCAGCTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.03184 E= 4.8e+002 106 -1217 11 -42 -78 -63 152 -1217 -200 199 -1217 -1217 184 -1217 -1217 -200 -1217 -1217 198 -259 -42 131 -15 -1217 -358 -1217 -1217 190 -1217 -1217 205 -1217 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCAGCTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 46 E= 4.8e+002 0.543478 0.000000 0.260870 0.195652 0.152174 0.152174 0.695652 0.000000 0.065217 0.934783 0.000000 0.000000 0.934783 0.000000 0.000000 0.065217 0.000000 0.000000 0.956522 0.043478 0.195652 0.586957 0.217391 0.000000 0.021739 0.000000 0.000000 0.978261 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCAGCTG MEME-4 regular expression -------------------------------------------------------------------------------- [AG]GCAG[CG]TG -------------------------------------------------------------------------------- Time 14.92 secs. ******************************************************************************** ******************************************************************************** MOTIF RGGARARR MEME-5 width = 8 sites = 36 llr = 291 E-value = 1.9e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif RGGARARR MEME-5 Description -------------------------------------------------------------------------------- Simplified A 4::a4a36 pos.-specific C ::::2::: probability G 6aa:4:74 matrix T :::::::: bits 2.1 ** 1.9 *** * 1.7 *** * 1.5 *** * Relative 1.2 *** * Entropy 1.0 **** *** (11.6 bits) 0.8 **** *** 0.6 **** *** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGAAAGA consensus A G AG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGARARR MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:6874582-6874662 53 1.59e-05 gggaaagata gggaaaga gaccagaggt chr19:35411435-35411515 31 1.59e-05 ctcgtgggaa gggaaaga cctgaccatc chr9:136159297-136159377 63 1.59e-05 ctcgagggaa gggaaaga cctgatcgtc chr7:127844653-127844733 47 1.59e-05 cacatgtcca gggaaaga cctggtggga chr4:145000108-145000188 54 3.07e-05 atcttctggt gggagaga tttccagctc chr4:144896909-144896989 51 3.07e-05 atcttctggt gggagaga tttctggctc chr11:85859527-85859607 50 3.07e-05 TGGGTTGAAA GGGAGAGA TTATAGGCAA chr11:58912726-58912806 14 3.07e-05 ggggaggaaa gggagaga ggcagagagg chr4:68418034-68418114 69 4.54e-05 tgcacctgaa gggaaagg aacg chr2:191049367-191049447 65 4.54e-05 TAAGGAACAG GGGAAAGG GTGCTGGG chr20:33780337-33780417 49 4.54e-05 tgcacctgaa gggaaagg aatgtgctta chr1:159927656-159927736 67 4.54e-05 ttttaatgtg gggaaagg cctgga chr10:126738228-12673830 4 4.54e-05 GGT GGGAAAGG GGAGTTCAAG chr2:239331045-239331125 24 1.24e-04 ACTGTCTGCC AGGAGAGA TAGGCCAGCT chr16:25783258-25783338 70 1.24e-04 tttctgtaaa gggacaga taa chr14:30119949-30120029 22 1.24e-04 cttacatctt gggaaaaa catgtcctgt chr4:1884768-1884848 48 1.24e-04 gtttgggata aggagaga tgaggggaag chr1:186257581-186257661 60 1.24e-04 AAAGGGTGTT GGGAAAAA AATTAGTTTT chr3:138941046-138941126 59 1.56e-04 TCCAGATTGA GGGAGAAA TGTAAACACA chr2:128300697-128300777 72 1.56e-04 ctatcacatg gggagaaa t chr9:130188242-130188322 63 1.56e-04 actgcaaaac aggaaagg aagtgctgtc chr11:62136565-62136645 11 1.56e-04 ctatcacatg gggagaaa ccctggacaa chr3:141765756-141765836 35 2.00e-04 CATTCAACCT GGGAAAAG CAGATAAGTG chr20:61408502-61408582 48 2.00e-04 aggaggaaat gggacagg aaggaggaga chr7:99659255-99659335 48 2.00e-04 GCAGATGGTG AGGAGAGG GTGAGCCTGG chr14:102144511-10214459 28 2.00e-04 CAGGTGCAGC GGGAAAAG GCTAATGGCA chr1:43867883-43867963 8 2.48e-04 TTTGTGT AGGACAGA CAAGAGAAAG chr8:37949392-37949472 71 2.48e-04 tgagcacaga aggaaaaa ca chr7:103451062-103451142 44 2.48e-04 CCTTCCTTGC AGGAAAAA AAAAACAAAA chr17:62971050-62971130 62 2.48e-04 TTATCTCACA AGGACAGA CATGTCTGGG chr22:44365548-44365628 11 2.48e-04 agcgagtatg gggagaag ggctggtagt chr7:7082258-7082338 41 2.48e-04 ccatctccct aggacaga acacctgcgg chr22:21448142-21448222 42 2.81e-04 ctattctgat aggagaaa accaccctgt chr2:236982051-236982131 30 3.13e-04 ATAGCTTATC AGGACAGG AGTTACATTT chr1:28851642-28851722 45 3.13e-04 ggaacagaac aggacagg gattttcaca chr20:35783271-35783351 36 3.43e-04 caagctgctc aggagaag agcagataag -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGARARR MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:6874582-6874662 1.6e-05 52_[+5]_20 chr19:35411435-35411515 1.6e-05 30_[+5]_42 chr9:136159297-136159377 1.6e-05 62_[+5]_10 chr7:127844653-127844733 1.6e-05 46_[+5]_26 chr4:145000108-145000188 3.1e-05 53_[+5]_19 chr4:144896909-144896989 3.1e-05 50_[+5]_22 chr11:85859527-85859607 3.1e-05 49_[+5]_23 chr11:58912726-58912806 3.1e-05 13_[+5]_59 chr4:68418034-68418114 4.5e-05 68_[+5]_4 chr2:191049367-191049447 4.5e-05 64_[+5]_8 chr20:33780337-33780417 4.5e-05 48_[+5]_24 chr1:159927656-159927736 4.5e-05 66_[+5]_6 chr10:126738228-12673830 4.5e-05 3_[+5]_69 chr2:239331045-239331125 0.00012 23_[+5]_49 chr16:25783258-25783338 0.00012 69_[+5]_3 chr14:30119949-30120029 0.00012 21_[+5]_51 chr4:1884768-1884848 0.00012 47_[+5]_25 chr1:186257581-186257661 0.00012 59_[+5]_13 chr3:138941046-138941126 0.00016 58_[+5]_14 chr2:128300697-128300777 0.00016 71_[+5]_1 chr9:130188242-130188322 0.00016 62_[+5]_10 chr11:62136565-62136645 0.00016 10_[+5]_62 chr3:141765756-141765836 0.0002 34_[+5]_38 chr20:61408502-61408582 0.0002 47_[+5]_25 chr7:99659255-99659335 0.0002 47_[+5]_25 chr14:102144511-10214459 0.0002 27_[+5]_45 chr1:43867883-43867963 0.00025 7_[+5]_65 chr8:37949392-37949472 0.00025 70_[+5]_2 chr7:103451062-103451142 0.00025 43_[+5]_29 chr17:62971050-62971130 0.00025 61_[+5]_11 chr22:44365548-44365628 0.00025 10_[+5]_62 chr7:7082258-7082338 0.00025 40_[+5]_32 chr22:21448142-21448222 0.00028 41_[+5]_31 chr2:236982051-236982131 0.00031 29_[+5]_43 chr1:28851642-28851722 0.00031 44_[+5]_28 chr20:35783271-35783351 0.00034 35_[+5]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGARARR MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RGGARARR width=8 seqs=36 chr12:6874582-6874662 ( 53) GGGAAAGA 1 chr19:35411435-35411515 ( 31) GGGAAAGA 1 chr9:136159297-136159377 ( 63) GGGAAAGA 1 chr7:127844653-127844733 ( 47) GGGAAAGA 1 chr4:145000108-145000188 ( 54) GGGAGAGA 1 chr4:144896909-144896989 ( 51) GGGAGAGA 1 chr11:85859527-85859607 ( 50) GGGAGAGA 1 chr11:58912726-58912806 ( 14) GGGAGAGA 1 chr4:68418034-68418114 ( 69) GGGAAAGG 1 chr2:191049367-191049447 ( 65) GGGAAAGG 1 chr20:33780337-33780417 ( 49) GGGAAAGG 1 chr1:159927656-159927736 ( 67) GGGAAAGG 1 chr10:126738228-12673830 ( 4) GGGAAAGG 1 chr2:239331045-239331125 ( 24) AGGAGAGA 1 chr16:25783258-25783338 ( 70) GGGACAGA 1 chr14:30119949-30120029 ( 22) GGGAAAAA 1 chr4:1884768-1884848 ( 48) AGGAGAGA 1 chr1:186257581-186257661 ( 60) GGGAAAAA 1 chr3:138941046-138941126 ( 59) GGGAGAAA 1 chr2:128300697-128300777 ( 72) GGGAGAAA 1 chr9:130188242-130188322 ( 63) AGGAAAGG 1 chr11:62136565-62136645 ( 11) GGGAGAAA 1 chr3:141765756-141765836 ( 35) GGGAAAAG 1 chr20:61408502-61408582 ( 48) GGGACAGG 1 chr7:99659255-99659335 ( 48) AGGAGAGG 1 chr14:102144511-10214459 ( 28) GGGAAAAG 1 chr1:43867883-43867963 ( 8) AGGACAGA 1 chr8:37949392-37949472 ( 71) AGGAAAAA 1 chr7:103451062-103451142 ( 44) AGGAAAAA 1 chr17:62971050-62971130 ( 62) AGGACAGA 1 chr22:44365548-44365628 ( 11) GGGAGAAG 1 chr7:7082258-7082338 ( 41) AGGACAGA 1 chr22:21448142-21448222 ( 42) AGGAGAAA 1 chr2:236982051-236982131 ( 30) AGGACAGG 1 chr1:28851642-28851722 ( 45) AGGACAGG 1 chr20:35783271-35783351 ( 36) AGGAGAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGARARR MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.389 E= 1.9e+002 47 -1181 140 -1181 -1181 -1181 205 -1181 -1181 -1181 205 -1181 194 -1181 -1181 -1181 77 -28 58 -1181 194 -1181 -1181 -1181 35 -1181 146 -1181 123 -1181 69 -1181 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGARARR MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 1.9e+002 0.361111 0.000000 0.638889 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.444444 0.194444 0.361111 0.000000 1.000000 0.000000 0.000000 0.000000 0.333333 0.000000 0.666667 0.000000 0.611111 0.000000 0.388889 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGARARR MEME-5 regular expression -------------------------------------------------------------------------------- [GA]GGA[AG]A[GA][AG] -------------------------------------------------------------------------------- Time 18.12 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:11876220-11876300 8.20e-03 13_[+3(8.25e-05)]_5_[+2(1.59e-05)]_\ 34_[+2(1.59e-05)]_4 chr19:40995477-40995557 8.30e-01 80 chr9:102907623-102907703 8.25e-02 7_[+1(1.72e-05)]_33_[+1(1.72e-05)]_\ 24 chr14:88491094-88491174 1.17e-02 61_[+1(1.72e-05)]_11 chr1:11160071-11160151 9.99e-01 80 chr6:142337949-142338029 8.20e-03 17_[+2(1.59e-05)]_21_[+3(8.25e-05)]_\ 5_[+2(1.59e-05)]_13 chr7:7082258-7082338 1.65e-02 80 chr3:152949176-152949256 2.06e-02 15_[+1(1.72e-05)]_34_[+1(1.72e-05)]_\ 15 chr9:124553263-124553343 4.97e-02 18_[+2(1.59e-05)]_34_[+2(1.59e-05)]_\ 12 chr11:68391348-68391428 1.61e-02 17_[+2(1.59e-05)]_34_[+2(1.59e-05)]_\ 13 chr9:68508377-68508457 1.85e-02 80 chr3:32115905-32115985 1.13e-04 11_[+2(9.88e-05)]_11_[+3(1.44e-05)]_\ 42 chr3:49398905-49398985 1.70e-01 80 chr1:6489864-6489944 2.16e-01 80 chr11:62436662-62436742 1.52e-02 80 chr4:144940549-144940629 2.18e-01 80 chr14:35122429-35122509 1.13e-04 15_[+2(9.88e-05)]_11_[+3(1.44e-05)]_\ 38 chr5:32288439-32288519 3.28e-04 14_[+1(5.24e-05)]_39_[+4(2.70e-05)]_\ 11 chr1:25611714-25611794 4.43e-01 80 chrX:15184180-15184260 1.38e-01 80 chr4:129566585-129566665 1.54e-02 2_[+1(1.72e-05)]_34_[+1(1.72e-05)]_\ 28 chr7:92515493-92515573 8.50e-03 80 chr17:19913691-19913771 1.73e-01 80 chr11:124537651-12453773 1.32e-01 52_[+2(9.88e-05)]_20 chr3:171164806-171164886 9.56e-01 80 chr2:25479546-25479626 8.41e-02 80 chr20:9129880-9129960 4.90e-01 80 chr9:35004460-35004540 1.63e-02 13_[+2(1.59e-05)]_34_[+2(1.59e-05)]_\ 17 chr4:95309247-95309327 2.06e-02 14_[+1(1.72e-05)]_34_[+1(1.72e-05)]_\ 16 chr7:104607699-104607779 5.92e-03 13_[+1(8.77e-05)]_59 chr1:52541461-52541541 3.28e-03 28_[+3(2.74e-05)]_44 chr17:62919216-62919296 1.36e-01 80 chr19:381054-381134 6.65e-02 9_[+4(7.10e-05)]_28_[+4(7.10e-05)]_\ 27 chr6:159303120-159303200 3.24e-02 57_[+1(5.24e-05)]_15 chr1:35602541-35602621 2.73e-02 30_[+1(1.72e-05)]_34_[+1(1.72e-05)] chr8:96280541-96280621 5.75e-01 80 chr7:5492408-5492488 2.46e-01 80 chr6:14301847-14301927 1.57e-02 47_[+1(1.72e-05)]_25 chr1:52097564-52097644 3.59e-01 80 chr14:102144511-10214459 1.71e-03 80 chr8:67664918-67664998 1.85e-02 80 chr2:114367617-114367697 4.32e-02 34_[+4(8.47e-05)]_38 chr13:44972165-44972245 3.67e-03 47_[+4(7.10e-05)]_25 chr7:127844653-127844733 2.63e-06 15_[+2(1.59e-05)]_23_[+5(1.59e-05)]_\ 26 chr11:5186203-5186283 1.34e-02 27_[+1(1.72e-05)]_34_[+1(1.72e-05)]_\ 3 chr20:46153255-46153335 1.02e-01 80 chr11:61055390-61055470 2.28e-01 80 chr1:160919157-160919237 2.64e-01 80 chr1:160979571-160979651 3.88e-01 80 chr1:95100701-95100781 9.99e-04 16_[+4(1.40e-05)]_56 chr5:158555241-158555321 7.25e-02 80 chr3:177148581-177148661 1.54e-02 80 chr1:186257581-186257661 4.02e-03 44_[+1(5.24e-05)]_28 chr8:93107683-93107763 4.00e-02 41_[+5(7.63e-05)]_31 chr7:99321012-99321092 2.07e-02 80 chr7:64405499-64405579 1.60e-04 40_[+3(8.25e-05)]_32 chr2:218706961-218707041 1.82e-01 80 chr4:25052494-25052574 1.86e-02 45_[+1(3.39e-05)]_27 chr6:21102042-21102122 5.61e-01 80 chr8:38068315-38068395 4.28e-04 80 chr1:25606333-25606413 6.03e-04 14_[+2(9.88e-05)]_36_[+4(1.40e-05)]_\ 14 chr2:174924265-174924345 1.78e-02 19_[+2(1.59e-05)]_53 chr18:968436-968516 6.05e-01 80 chr22:32022692-32022772 7.55e-02 80 chr9:136159297-136159377 1.18e-02 62_[+5(1.59e-05)]_10 chr10:127293916-12729399 2.11e-01 80 chr6:112126183-112126263 5.97e-01 80 chr1:211395917-211395997 2.51e-03 45_[+2(1.59e-05)]_27 chr22:44365548-44365628 2.28e-03 80 chr16:21272944-21273024 4.52e-02 5_[+2(6.53e-05)]_67 chr7:99659255-99659335 1.99e-03 36_[+4(7.10e-05)]_22_[+4(1.40e-05)]_\ 6 chr16:73071833-73071913 1.71e-03 10_[+2(6.53e-05)]_8_[+3(8.25e-05)]_\ 46 chr4:1884768-1884848 6.81e-02 80 chr19:516712-516792 2.95e-01 80 chr19:14502130-14502210 9.04e-02 80 chr21:38798147-38798227 6.70e-02 80 chr6:16263861-16263941 1.41e-02 27_[+1(1.72e-05)]_34_[+1(1.72e-05)]_\ 3 chr3:195805980-195806060 1.27e-01 30_[+2(9.88e-05)]_42 chrX:134996732-134996812 2.58e-02 80 chr14:23366708-23366788 7.95e-03 80 chr6:109606051-109606131 6.93e-01 80 chr1:28851642-28851722 5.29e-02 80 chr17:62971050-62971130 5.90e-03 50_[+2(9.88e-05)]_22 chr6:150881285-150881365 4.97e-02 80 chr12:53703882-53703962 2.86e-01 80 chr11:62645218-62645298 4.28e-02 55_[+4(5.55e-05)]_17 chr15:31270678-31270758 1.77e-01 80 chr15:45709924-45710004 8.94e-01 80 chr7:158628264-158628344 2.26e-01 80 chr2:209354100-209354180 2.91e-03 21_[+1(1.72e-05)]_51 chr2:169990966-169991046 2.52e-01 80 chr17:60311560-60311640 2.58e-03 1_[+1(1.72e-05)]_71 chr5:131987933-131988013 3.20e-02 80 chr1:70005892-70005972 2.34e-03 80 chr20:3890811-3890891 2.75e-01 80 chr7:43026534-43026614 3.49e-02 80 chr13:19398955-19399035 1.05e-02 35_[+1(3.39e-05)]_37 chr17:14064894-14064974 6.63e-03 80 chr7:77502873-77502953 2.33e-02 53_[+2(9.88e-05)]_19 chr10:13457785-13457865 2.41e-01 80 chr14:30119949-30120029 3.28e-04 66_[+4(5.55e-05)]_6 chr5:153121723-153121803 4.12e-01 80 chr5:122199152-122199232 5.11e-01 80 chr4:103277084-103277164 5.65e-02 80 chr6:80314407-80314487 2.88e-05 71_[+3(1.44e-05)]_1 chr1:211495158-211495238 2.47e-01 80 chrX:49005178-49005258 5.23e-01 80 chr6:74238777-74238857 1.85e-01 80 chr8:95537587-95537667 1.36e-01 80 chr10:126738228-12673830 8.71e-05 3_[+5(4.54e-05)]_21_[+1(1.72e-05)]_\ 40 chr2:172487754-172487834 9.95e-03 61_[+1(1.72e-05)]_11 chr9:125209201-125209281 1.39e-01 80 chr2:240008158-240008238 6.62e-02 80 chr11:16626400-16626480 6.72e-03 24_[+3(8.25e-05)]_48 chr3:156178166-156178246 4.08e-01 80 chr9:4862958-4863038 5.87e-02 80 chr2:191136665-191136745 1.98e-01 9_[+3(9.55e-05)]_63 chr16:56323878-56323958 3.08e-02 64_[+2(1.59e-05)]_8 chr1:46886055-46886135 2.59e-03 80 chrX:49100800-49100880 5.92e-01 80 chr11:62136565-62136645 1.77e-01 80 chr3:14162501-14162581 8.40e-02 37_[+4(5.55e-05)]_35 chr18:67693008-67693088 3.07e-01 80 chr1:159927656-159927736 5.40e-05 45_[+1(5.24e-05)]_13_[+5(4.54e-05)]_\ 6 chr8:30028697-30028777 2.55e-02 80 chr19:53664570-53664650 8.26e-03 16_[+3(8.25e-05)]_8_[+2(4.86e-05)]_\ 40 chr15:85831588-85831668 1.81e-01 80 chr20:61408502-61408582 2.02e-02 80 chr16:19499330-19499410 5.91e-02 80 chr16:8688305-8688385 6.03e-02 80 chr1:191793096-191793176 1.15e-01 80 chr17:26854439-26854519 7.06e-03 45_[+1(3.39e-05)]_27 chr6:160992397-160992477 3.93e-01 80 chr2:236982051-236982131 3.78e-03 80 chr5:1067959-1068039 5.42e-01 80 chr20:39679398-39679478 7.05e-03 1_[+3(8.25e-05)]_52_[+2(6.53e-05)]_\ 11 chr10:7049682-7049762 1.23e-01 80 chr17:4152915-4152995 1.77e-01 80 chr12:67314157-67314237 2.86e-05 35_[+3(1.44e-05)]_18_[+4(1.40e-05)]_\ 11 chr1:25739882-25739962 9.57e-03 80 chr5:178110919-178110999 1.14e-01 5_[+1(8.77e-05)]_67 chr14:36733970-36734050 1.47e-02 62_[+4(2.70e-05)]_10 chr9:130188242-130188322 9.50e-04 26_[+4(7.10e-05)]_46 chr14:20645698-20645778 5.75e-03 69_[+4(5.55e-05)]_3 chr2:217957621-217957701 7.79e-02 80 chr12:92798834-92798914 1.47e-01 8_[+2(6.53e-05)]_64 chr4:99608187-99608267 5.10e-02 80 chr20:35783271-35783351 2.63e-03 45_[+1(3.39e-05)]_27 chr1:207809088-207809168 2.16e-01 80 chr16:25783258-25783338 1.03e-02 80 chr1:224058451-224058531 7.89e-03 80 chr18:33780475-33780555 1.11e-02 60_[+1(3.39e-05)]_12 chr7:103451062-103451142 4.10e-02 80 chr16:56312539-56312619 5.81e-01 80 chr6:27741808-27741888 6.56e-02 80 chr20:33780337-33780417 1.41e-02 48_[+5(4.54e-05)]_24 chr18:33262623-33262703 3.75e-03 31_[+2(4.86e-05)]_29_[+3(9.55e-05)]_\ 4 chr11:58912726-58912806 1.83e-02 13_[+5(3.07e-05)]_59 chr22:21448142-21448222 3.59e-02 80 chr11:85859527-85859607 1.07e-02 49_[+5(3.07e-05)]_23 chr20:48715012-48715092 3.13e-01 80 chr1:243269325-243269405 5.79e-02 80 chr15:74902916-74902996 2.81e-02 80 chr6:164767853-164767933 9.52e-03 80 chr3:133472796-133472876 6.69e-01 80 chr4:71520436-71520516 1.16e-01 80 chrX:47543031-47543111 2.46e-03 49_[+4(5.55e-05)]_12_[+2(6.53e-05)]_\ 3 chr4:144826794-144826874 2.61e-01 80 chr12:108879336-10887941 8.34e-04 24_[+3(5.63e-05)]_48 chr7:107876174-107876254 1.04e-02 80 chr7:128790239-128790319 1.84e-03 30_[+4(1.40e-05)]_42 chr15:61913562-61913642 5.11e-02 19_[+2(4.86e-05)]_53 chr2:128300697-128300777 6.75e-02 80 chr3:141567995-141568075 5.08e-03 80 chr19:45093955-45094035 6.18e-02 80 chr3:5123728-5123808 9.49e-03 37_[+2(1.59e-05)]_35 chr15:40189573-40189653 7.79e-05 53_[+2(1.59e-05)]_5_[+3(1.44e-05)]_\ 6 chr4:144896909-144896989 1.73e-02 50_[+5(3.07e-05)]_22 chr16:23678660-23678740 8.67e-02 80 chr12:23052379-23052459 2.45e-01 80 chr1:41405184-41405264 3.34e-01 80 chr1:151687992-151688072 1.04e-03 6_[+3(1.44e-05)]_[+3(5.63e-05)]_12_\ [+2(1.59e-05)]_38 chr15:64731368-64731448 7.56e-02 80 chr2:239331045-239331125 1.06e-04 46_[+4(2.70e-05)]_12_[+1(5.24e-05)]_\ 6 chr3:98302749-98302829 6.60e-03 37_[+3(5.63e-05)]_35 chr15:43513429-43513509 4.53e-02 80 chr19:35411435-35411515 9.79e-03 30_[+5(1.59e-05)]_42 chr11:125423023-12542310 6.70e-03 27_[+1(3.39e-05)]_45 chr17:57779792-57779872 2.89e-02 80 chr12:14388196-14388276 1.13e-04 24_[+2(9.88e-05)]_11_[+3(1.44e-05)]_\ 29 chr19:21311710-21311790 4.81e-01 80 chr8:37949392-37949472 3.09e-03 46_[+1(3.39e-05)]_26 chr13:38533661-38533741 5.26e-01 80 chr3:32750354-32750434 2.13e-01 80 chr7:100627899-100627979 2.29e-01 80 chr10:103892327-10389240 7.08e-01 80 chr4:145000108-145000188 1.39e-02 53_[+5(3.07e-05)]_19 chr7:10774368-10774448 1.49e-01 33_[+2(9.88e-05)]_39 chr1:110955917-110955997 5.97e-03 5_[+2(1.59e-05)]_41_[+4(5.55e-05)]_\ 18 chr1:43867883-43867963 3.34e-03 41_[+1(3.39e-05)]_31 chr2:84178561-84178641 1.25e-03 59_[+2(6.53e-05)]_13 chr11:85862539-85862619 7.11e-02 80 chr5:131649924-131650004 8.97e-03 80 chr2:11419654-11419734 1.56e-03 32_[+1(5.24e-05)]_40 chr9:35728616-35728696 5.37e-03 80 chr2:191049367-191049447 2.49e-02 64_[+5(4.54e-05)]_8 chr4:119495641-119495721 5.73e-03 80 chr15:73797384-73797464 4.68e-02 6_[+2(4.86e-05)]_66 chr6:28514942-28515022 2.01e-02 80 chr13:95923488-95923568 4.85e-02 80 chr16:10591148-10591228 1.38e-01 80 chr4:69730322-69730402 6.19e-02 80 chr4:32003782-32003862 1.83e-01 80 chr3:138941046-138941126 2.78e-02 80 chr12:6874582-6874662 4.85e-05 16_[+1(3.39e-05)]_18_[+5(1.59e-05)]_\ 2_[+5(1.59e-05)]_20 chr15:57675326-57675406 1.26e-01 80 chr12:50956904-50956984 5.00e-02 80 chr3:125152098-125152178 4.36e-03 67_[+2(6.53e-05)]_5 chr4:140364943-140365023 1.43e-02 50_[+1(5.24e-05)]_22 chr22:36764666-36764746 7.55e-03 58_[+2(4.86e-05)]_14 chr3:45010054-45010134 4.87e-02 80 chr17:65852220-65852300 6.89e-01 80 chr1:65696956-65697036 5.76e-01 80 chr4:145061907-145061987 2.18e-01 80 chr9:69491644-69491724 1.05e-02 23_[+1(1.72e-05)]_49 chr1:18861042-18861122 3.97e-01 80 chr5:134528270-134528350 3.12e-01 80 chr7:72176117-72176197 1.89e-01 80 chr1:61514692-61514772 3.35e-03 4_[+1(1.72e-05)]_68 chr22:37948834-37948914 2.95e-04 22_[+4(1.40e-05)]_22_[+4(1.40e-05)]_\ 20 chr5:148018807-148018887 3.12e-01 80 chr20:37192565-37192645 8.78e-03 80 chr5:139990838-139990918 1.47e-01 80 chr7:90929388-90929468 1.23e-03 62_[+1(8.77e-05)]_10 chr11:82503057-82503137 6.46e-03 70_[+1(1.72e-05)]_2 chr19:6682880-6682960 8.43e-02 80 chr4:68418034-68418114 1.09e-02 68_[+5(4.54e-05)]_4 chr2:202305072-202305152 1.48e-01 80 chr11:43974055-43974135 6.18e-02 80 chr4:99722492-99722572 3.21e-02 6_[+2(9.88e-05)]_66 chr17:49243392-49243472 4.32e-02 35_[+4(7.10e-05)]_37 chr1:237077132-237077212 5.67e-02 47_[+2(9.88e-05)]_25 chr5:148127224-148127304 4.58e-02 80 chr5:149861721-149861801 5.98e-02 10_[+2(9.88e-05)]_62 chr12:28345254-28345334 6.36e-01 80 chr16:9171962-9172042 1.81e-01 80 chr8:30892376-30892456 1.22e-01 64_[+4(5.55e-05)]_8 chr11:17208653-17208733 4.07e-03 80 chrX:153163517-153163597 1.59e-03 68_[+3(1.44e-05)]_4 chr3:141765756-141765836 1.65e-03 42_[+1(3.39e-05)]_30 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************