******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/PCBP2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr6:50870224-50870304 1.0000 80 chr7:156578992-156579072 1.0000 80 chr4:26211246-26211326 1.0000 80 chr8:58844465-58844545 1.0000 80 chr13:90543213-90543293 1.0000 80 chr4:80937096-80937176 1.0000 80 chr6:73760084-73760164 1.0000 80 chr5:128147656-128147736 1.0000 80 chr7:66931534-66931614 1.0000 80 chr2:184141706-184141786 1.0000 80 chr5:179442507-179442587 1.0000 80 chr5:3278960-3279040 1.0000 80 chr18:39317345-39317425 1.0000 80 chr15:86535622-86535702 1.0000 80 chr18:26737486-26737566 1.0000 80 chr1:117412439-117412519 1.0000 80 chr15:100551661-10055174 1.0000 80 chr15:89587007-89587087 1.0000 80 chr10:50228849-50228929 1.0000 80 chr1:78733347-78733427 1.0000 80 chr12:66424260-66424340 1.0000 80 chr7:79419420-79419500 1.0000 80 chr7:130111982-130112062 1.0000 80 chr14:67596662-67596742 1.0000 80 chr1:48884584-48884664 1.0000 80 chr12:119806031-11980611 1.0000 80 chr1:107469956-107470036 1.0000 80 chr7:90815463-90815543 1.0000 80 chr2:65939147-65939227 1.0000 80 chr6:109385693-109385773 1.0000 80 chr6:159725848-159725928 1.0000 80 chr3:5145578-5145658 1.0000 80 chr1:106279135-106279215 1.0000 80 chr10:16984901-16984981 1.0000 80 chr2:102450477-102450557 1.0000 80 chr2:51428616-51428696 1.0000 80 chr15:94265568-94265648 1.0000 80 chr1:171144183-171144263 1.0000 80 chr1:235465711-235465791 1.0000 80 chr21:31933012-31933092 1.0000 80 chr15:67882633-67882713 1.0000 80 chr1:170886686-170886766 1.0000 80 chr8:124624231-124624311 1.0000 80 chr11:100924550-10092463 1.0000 80 chr2:188177779-188177859 1.0000 80 chr21:29546500-29546580 1.0000 80 chr7:125460697-125460777 1.0000 80 chr7:65589370-65589450 1.0000 80 chr3:165194290-165194370 1.0000 80 chr16:5348678-5348758 1.0000 80 chr16:62191020-62191100 1.0000 80 chr4:185574130-185574210 1.0000 80 chr2:45642685-45642765 1.0000 80 chr1:239763926-239764006 1.0000 80 chr16:61760202-61760282 1.0000 80 chr10:20203089-20203169 1.0000 80 chr8:106494986-106495066 1.0000 80 chr9:71870671-71870751 1.0000 80 chr1:188389467-188389547 1.0000 80 chr12:91249459-91249539 1.0000 80 chr4:35791680-35791760 1.0000 80 chr1:100321754-100321834 1.0000 80 chr4:28107931-28108011 1.0000 80 chr21:38411980-38412060 1.0000 80 chr1:14433545-14433625 1.0000 80 chr17:68180830-68180910 1.0000 80 chr18:31774231-31774311 1.0000 80 chr12:92775794-92775874 1.0000 80 chr9:107301729-107301809 1.0000 80 chr1:20952692-20952772 1.0000 80 chr12:68618542-68618622 1.0000 80 chr4:59278230-59278310 1.0000 80 chr12:78357549-78357629 1.0000 80 chr7:100896671-100896751 1.0000 80 chr10:36536538-36536618 1.0000 80 chr8:137968045-137968125 1.0000 80 chr19:245466-245546 1.0000 80 chr2:119527453-119527533 1.0000 80 chr6:166319389-166319469 1.0000 80 chr6:6624645-6624725 1.0000 80 chr11:116309930-11631001 1.0000 80 chr2:174543083-174543163 1.0000 80 chr3:149482253-149482333 1.0000 80 chr2:134345920-134346000 1.0000 80 chr12:26770743-26770823 1.0000 80 chr7:122037561-122037641 1.0000 80 chr2:45642941-45643021 1.0000 80 chr2:146576868-146576948 1.0000 80 chr3:34059411-34059491 1.0000 80 chr13:93231392-93231472 1.0000 80 chr4:2301457-2301537 1.0000 80 chr6:155443654-155443734 1.0000 80 chr6:21448866-21448946 1.0000 80 chr1:235265030-235265110 1.0000 80 chr11:95466240-95466320 1.0000 80 chr19:39251604-39251684 1.0000 80 chr17:79223175-79223255 1.0000 80 chr2:161349959-161350039 1.0000 80 chr20:31165974-31166054 1.0000 80 chr18:614376-614456 1.0000 80 chr8:59252835-59252915 1.0000 80 chr1:180054097-180054177 1.0000 80 chr1:173578056-173578136 1.0000 80 chr5:78682658-78682738 1.0000 80 chr12:120288330-12028841 1.0000 80 chr1:196380057-196380137 1.0000 80 chr1:164729583-164729663 1.0000 80 chr12:68618329-68618409 1.0000 80 chr7:73036111-73036191 1.0000 80 chr1:53266839-53266919 1.0000 80 chr12:78357766-78357846 1.0000 80 chr17:68180506-68180586 1.0000 80 chr11:21127553-21127633 1.0000 80 chr22:17272385-17272465 1.0000 80 chr14:90767261-90767341 1.0000 80 chr3:26805272-26805352 1.0000 80 chr11:5124472-5124552 1.0000 80 chr8:106495294-106495374 1.0000 80 chr6:4710583-4710663 1.0000 80 chr18:33960322-33960402 1.0000 80 chr13:108930889-10893096 1.0000 80 chr2:9678160-9678240 1.0000 80 chr1:216649176-216649256 1.0000 80 chr4:153695275-153695355 1.0000 80 chr2:216516283-216516363 1.0000 80 chr2:57059078-57059158 1.0000 80 chr10:77432199-77432279 1.0000 80 chr12:64599542-64599622 1.0000 80 chr7:121519769-121519849 1.0000 80 chr4:114315412-114315492 1.0000 80 chr3:65245813-65245893 1.0000 80 chr14:91651060-91651140 1.0000 80 chr11:97933607-97933687 1.0000 80 chr3:1164095-1164175 1.0000 80 chr7:132712334-132712414 1.0000 80 chr17:56575968-56576048 1.0000 80 chr2:160473746-160473826 1.0000 80 chr7:113250787-113250867 1.0000 80 chr7:35879885-35879965 1.0000 80 chr7:37296048-37296128 1.0000 80 chr21:31122472-31122552 1.0000 80 chr3:168904108-168904188 1.0000 80 chr8:28433794-28433874 1.0000 80 chr4:125580130-125580210 1.0000 80 chr5:22058858-22058938 1.0000 80 chr4:55039881-55039961 1.0000 80 chr6:158213042-158213122 1.0000 80 chr6:37367670-37367750 1.0000 80 chr10:64841275-64841355 1.0000 80 chr9:38735004-38735084 1.0000 80 chr21:31322460-31322540 1.0000 80 chr9:132716135-132716215 1.0000 80 chr7:25846972-25847052 1.0000 80 chr1:221873566-221873646 1.0000 80 chr4:112619685-112619765 1.0000 80 chr8:67458246-67458326 1.0000 80 chr4:122595563-122595643 1.0000 80 chr17:44202475-44202555 1.0000 80 chr5:70962987-70963067 1.0000 80 chr1:79837677-79837757 1.0000 80 chr7:134510058-134510138 1.0000 80 chr2:163605518-163605598 1.0000 80 chr1:161001832-161001912 1.0000 80 chr9:107008360-107008440 1.0000 80 chr11:125844336-12584441 1.0000 80 chr5:79524173-79524253 1.0000 80 chr16:69205617-69205697 1.0000 80 chr7:68046624-68046704 1.0000 80 chr9:37286670-37286750 1.0000 80 chr1:241838296-241838376 1.0000 80 chr16:50253462-50253542 1.0000 80 chr10:70262792-70262872 1.0000 80 chr10:63491546-63491626 1.0000 80 chr13:95977951-95978031 1.0000 80 chr17:51059872-51059952 1.0000 80 chr7:150342900-150342980 1.0000 80 chr8:2985494-2985574 1.0000 80 chr2:18676493-18676573 1.0000 80 chr17:63848412-63848492 1.0000 80 chr10:49619612-49619692 1.0000 80 chr6:50603322-50603402 1.0000 80 chr18:8661414-8661494 1.0000 80 chr8:4032292-4032372 1.0000 80 chr5:44779432-44779512 1.0000 80 chr19:28775147-28775227 1.0000 80 chr4:151579577-151579657 1.0000 80 chr16:46612250-46612330 1.0000 80 chr2:116644945-116645025 1.0000 80 chr21:19944526-19944606 1.0000 80 chr1:220749258-220749338 1.0000 80 chr4:153842567-153842647 1.0000 80 chr10:32144095-32144175 1.0000 80 chr1:190618817-190618897 1.0000 80 chr12:96302466-96302546 1.0000 80 chr13:92463360-92463440 1.0000 80 chr10:54008787-54008867 1.0000 80 chr16:19798224-19798304 1.0000 80 chr12:114450977-11445105 1.0000 80 chr2:3738065-3738145 1.0000 80 chr2:156858505-156858585 1.0000 80 chr10:30949789-30949869 1.0000 80 chr8:79100833-79100913 1.0000 80 chr6:34942120-34942200 1.0000 80 chr6:7296998-7297078 1.0000 80 chr5:108676231-108676311 1.0000 80 chr20:38658234-38658314 1.0000 80 chr1:51480707-51480787 1.0000 80 chr19:59096923-59097003 1.0000 80 chr11:98492669-98492749 1.0000 80 chr10:38133710-38133790 1.0000 80 chr21:39628691-39628771 1.0000 80 chr15:40039093-40039173 1.0000 80 chr6:161874792-161874872 1.0000 80 chr1:174611676-174611756 1.0000 80 chr16:13759888-13759968 1.0000 80 chr11:25236237-25236317 1.0000 80 chr22:17272735-17272815 1.0000 80 chr3:23864183-23864263 1.0000 80 chr7:130895534-130895614 1.0000 80 chr1:168115527-168115607 1.0000 80 chr1:28111331-28111411 1.0000 80 chr10:26592455-26592535 1.0000 80 chr6:170802612-170802692 1.0000 80 chr12:31650901-31650981 1.0000 80 chr1:159613026-159613106 1.0000 80 chr15:87178362-87178442 1.0000 80 chr1:220074340-220074420 1.0000 80 chr11:77489319-77489399 1.0000 80 chr8:97262943-97263023 1.0000 80 chr2:32893483-32893563 1.0000 80 chr17:79910089-79910169 1.0000 80 chr7:144410069-144410149 1.0000 80 chr6:140697485-140697565 1.0000 80 chr2:3737769-3737849 1.0000 80 chr6:34334273-34334353 1.0000 80 chr6:159384206-159384286 1.0000 80 chr21:38645931-38646011 1.0000 80 chr5:39006897-39006977 1.0000 80 chr1:166365123-166365203 1.0000 80 chr4:138749184-138749264 1.0000 80 chr8:128824966-128825046 1.0000 80 chr9:97917651-97917731 1.0000 80 chr8:38854932-38855012 1.0000 80 chr12:24020886-24020966 1.0000 80 chrX:122735435-122735515 1.0000 80 chr19:55646248-55646328 1.0000 80 chr17:48952629-48952709 1.0000 80 chr3:15197637-15197717 1.0000 80 chr21:41442233-41442313 1.0000 80 chr1:17619439-17619519 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_PCBP2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/PCBP2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.306 C 0.198 G 0.2 T 0.296 Background letter frequencies (from file dataset with add-one prior applied): A 0.306 C 0.198 G 0.2 T 0.296 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GGAAGGAA MEME-1 width = 8 sites = 90 llr = 741 E-value = 1.0e-063 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGAAGGAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1:a72187 pos.-specific C :::::::: probability G 9a:38923 matrix T :::::::: bits 2.3 * 2.1 * 1.9 ** * 1.6 *** * Relative 1.4 *** ** Entropy 1.2 *** *** (11.9 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGAAGGAA consensus GA GG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAGGAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr21:41442233-41442313 1 1.40e-05 . ggaaggaa ggatagaagg chr8:128824966-128825046 8 1.40e-05 gaaagaa ggaaggaa AAAACCGGTC chr4:138749184-138749264 65 1.40e-05 gggaaggaag ggaaggaa ggggaagg chr1:51480707-51480787 4 1.40e-05 gaa ggaaggaa ggaaATAAAA chr20:38658234-38658314 61 1.40e-05 aggaaggaag ggaaggaa gggagggagg chr18:8661414-8661494 1 1.40e-05 . ggaaggaa gaaaATTGTA chr16:69205617-69205697 8 1.40e-05 agggaag ggaaggAA AACCAGTATT chr4:112619685-112619765 13 1.40e-05 aagaaaggaa ggaaggaa aatgaatgaa chr5:22058858-22058938 51 1.40e-05 aagggaggaa ggaaggaa ggaaAATAAA chr12:64599542-64599622 26 1.40e-05 aaggaaggaa ggaaggaa ggcaggttcg chr6:4710583-4710663 47 1.40e-05 aaggaaggaa ggaaggaa ACTACATTTA chr3:26805272-26805352 48 1.40e-05 aagaaaggaa ggaaggaa gtgaggaagg chr12:68618329-68618409 45 1.40e-05 aaagaaggaa ggaaggaa agagagagag chr18:614376-614456 5 1.40e-05 gaga ggaaggaa aggaaggaTA chr20:31165974-31166054 3 1.40e-05 ag ggaaggaa ggaaAATTaa chr12:26770743-26770823 1 1.40e-05 . ggaaggaa ggaaaaatta chr2:174543083-174543163 55 1.40e-05 aggggaggaa ggaaggaa ggaagaaaag chr7:100896671-100896751 9 1.40e-05 ggagggag ggaaggaA AGGAAAATAA chr9:107301729-107301809 4 1.40e-05 gaa ggaaggaa aagaaggaaa chr4:185574130-185574210 65 1.40e-05 gagggaggga ggaaggaa ggaaggaa chr3:165194290-165194370 66 1.40e-05 agagagggaa ggaaggaa gggagcg chr1:171144183-171144263 6 1.40e-05 AGGGA GGAAGGAA TCAAAAGGTT chr1:107469956-107470036 4 1.40e-05 gaa ggaaggaa ggaaggaagg chr8:58844465-58844545 57 1.40e-05 gaaaatggaa ggaaggaa ggcaggtagg chr6:50870224-50870304 2 1.40e-05 a ggaaggaa CTTCAAAATC chr21:19944526-19944606 40 2.32e-05 gatgggaatg ggaaggag gaggaggaga chr1:173578056-173578136 42 2.32e-05 ggaagggaga ggaaggag aaggggaagg chr12:91249459-91249539 26 2.32e-05 caaaaaagaa ggaaggag ggagaaagaa chr18:26737486-26737566 15 2.32e-05 agggagagag ggaaggag ggaggTTAAT chr5:179442507-179442587 54 2.32e-05 gaaggagtag ggaaggag tagggaaagg chr17:44202475-44202555 8 3.24e-05 gagggag ggagggaa agaaattgcc chr7:25846972-25847052 11 3.24e-05 gaagagatag ggagggaA GACAAAAAGC chr17:79223175-79223255 73 3.24e-05 ggagaaggag ggagggaa chr1:221873566-221873646 35 4.15e-05 AAGGAAAGAA GGAAGGGA CAGAGGGAGG chr3:65245813-65245893 3 4.15e-05 ag ggaaggga aAAGGAGATG chr12:68618542-68618622 5 4.15e-05 ggga ggaaggga gagaaagaga chr1:170886686-170886766 4 4.15e-05 aag ggaaggga agggGACACA chr1:48884584-48884664 11 4.15e-05 AAAGGGAAAG GGAAGGGA AGAAGAAATC chr6:34334273-34334353 4 4.75e-05 gag ggagggag ggagggagag chr1:220074340-220074420 8 4.75e-05 ggagagg ggagggag ggagaaaggg chr7:130895534-130895614 35 4.75e-05 GAAGTGGCCA GGAGGGAG ACCAAATTAG chr12:114450977-11445105 6 4.75e-05 gatgg ggagggag ggggACATTT chr8:2985494-2985574 16 4.75e-05 aagaagggag ggagggag gGACTTAACT chr7:37296048-37296128 63 4.75e-05 GAGGGAGGAT GGAGGGAG GAgaaggagg chr1:53266839-53266919 54 4.75e-05 GGAAGGCTGA GGAGGGAG GGGCTATTAT chr1:20952692-20952772 1 4.75e-05 . ggagggag ggatggagga chr6:159725848-159725928 13 4.75e-05 GGGTGAGGGA GGAGGGAG GAGAGCCAGG chr4:80937096-80937176 60 4.75e-05 ggaaaggaaa ggaGGGAG AGGTCGGTCC chr21:38645931-38646011 17 5.35e-05 ggaggaagag ggaagggg tacaggagga chr10:63491546-63491626 3 5.35e-05 ag ggaagggg gggaAAGTTT chr12:120288330-12028841 8 5.35e-05 gggaaag ggaagggG CTGTCACTTA chr2:119527453-119527533 13 5.35e-05 agaaaaggga ggaagggg ggaagTTTCC chr10:16984901-16984981 4 5.35e-05 agg ggaagggg aaaggaaagg chr11:77489319-77489399 2 5.95e-05 g ggagggga ggggaAAAAA chr6:170802612-170802692 36 5.95e-05 gaggaggtga ggagggga ggaggagagg chr4:35791680-35791760 3 5.95e-05 ga ggagggga ggacaaggga chr12:31650901-31650981 3 8.49e-05 ag ggaaagaa agagaggaaa chr16:13759888-13759968 15 8.49e-05 AAACAATAGA GGAAAGAA AAGGCTCATG chr16:19798224-19798304 2 8.49e-05 a ggaaagaa aaaggaagaa chr2:57059078-57059158 4 8.49e-05 gag ggaaagAA AGAAAGCAGA chr2:216516283-216516363 12 8.49e-05 GTAAGTGAAG GGAAAGAA AGAATGAGAG chr1:235265030-235265110 7 8.49e-05 tgagaa ggaaagaa TAAAGCAGAA chr7:122037561-122037641 5 8.49e-05 aggg ggaaagaa aggaaagaga chr12:119806031-11980611 7 8.49e-05 ggagga ggaggggg aggagAAGAT chr6:73760084-73760164 4 8.49e-05 aaa ggaaagaa AATAAATGTA chr15:100551661-10055174 5 1.13e-04 gaaa ggagagaa caaaggcagg chr14:90767261-90767341 2 1.27e-04 a ggaaagga ggaACAcagg chr8:4032292-4032372 2 1.36e-04 g ggagagag aCAGACCGAC chr11:116309930-11631001 16 1.58e-04 AAGACGAAAA GGAAGAAA ATGAAATTGC chr2:45642941-45643021 1 1.97e-04 . ggagagga gaggagagga chr10:20203089-20203169 1 1.97e-04 . agaaggaa TACATCAAGT chr9:107008360-107008440 8 2.21e-04 gaggaaa gggaggaa gaaaggaaga chr3:34059411-34059491 21 2.21e-04 AGGTTGTAGT GGAAGAAG CATTAAAGTG chr7:125460697-125460777 8 2.21e-04 gaggata gggaggaa tgaaggTTGG chr9:97917651-97917731 1 2.48e-04 . ggaggAAA AAGAAAATAT chr5:44779432-44779512 22 2.48e-04 GAAATTACAA GGAGGAAA AATACCAATA chr7:113250787-113250867 1 2.89e-04 . GGAGAGGG TAATCAATGC chr1:216649176-216649256 51 2.89e-04 AAGCTTAATA TGAAGGAA ACAAATGATT chr2:65939147-65939227 11 3.23e-04 AATAGAGAAC AGAGGGAA TAAATTTCAG chr10:32144095-32144175 39 4.13e-04 TGCAGACACA TGAGGGAA GCGAATTAGA chr6:6624645-6624725 1 4.35e-04 . ggatggga tgggataaaa chr4:59278230-59278310 26 4.35e-04 agttatttgc ggatggga gattaatggt chr17:79910089-79910169 21 4.57e-04 TGTGCATCCA AGAAGGGG TCAGAGTTGG chr12:66424260-66424340 11 4.79e-04 GTGCCACAGC TGAGGGAG TGTTCAGAAA chr5:70962987-70963067 13 5.28e-04 tagttcatat ggaaaaaa taaaatgatc chr4:55039881-55039961 1 5.28e-04 . GGAAAAAA GATGGAACAA chr4:2301457-2301537 15 5.28e-04 CATGTTCAGT GGAAAAAA AAATAAAACT chr7:79419420-79419500 34 5.58e-04 AATATTAgct gaaaggaa acaactaaac chr13:93231392-93231472 8 6.06e-04 AACAAAA AGAAAGAA ATAGGGTAAG chr7:130111982-130112062 9 7.73e-04 agctagat agaaagag taaattccag -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAGGAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr21:41442233-41442313 1.4e-05 [+1]_72 chr8:128824966-128825046 1.4e-05 7_[+1]_65 chr4:138749184-138749264 1.4e-05 64_[+1]_8 chr1:51480707-51480787 1.4e-05 3_[+1]_69 chr20:38658234-38658314 1.4e-05 60_[+1]_12 chr18:8661414-8661494 1.4e-05 [+1]_72 chr16:69205617-69205697 1.4e-05 7_[+1]_65 chr4:112619685-112619765 1.4e-05 12_[+1]_60 chr5:22058858-22058938 1.4e-05 50_[+1]_22 chr12:64599542-64599622 1.4e-05 25_[+1]_47 chr6:4710583-4710663 1.4e-05 46_[+1]_26 chr3:26805272-26805352 1.4e-05 47_[+1]_25 chr12:68618329-68618409 1.4e-05 44_[+1]_28 chr18:614376-614456 1.4e-05 4_[+1]_68 chr20:31165974-31166054 1.4e-05 2_[+1]_70 chr12:26770743-26770823 1.4e-05 [+1]_72 chr2:174543083-174543163 1.4e-05 54_[+1]_18 chr7:100896671-100896751 1.4e-05 8_[+1]_64 chr9:107301729-107301809 1.4e-05 3_[+1]_69 chr4:185574130-185574210 1.4e-05 64_[+1]_8 chr3:165194290-165194370 1.4e-05 65_[+1]_7 chr1:171144183-171144263 1.4e-05 5_[+1]_67 chr1:107469956-107470036 1.4e-05 3_[+1]_69 chr8:58844465-58844545 1.4e-05 56_[+1]_16 chr6:50870224-50870304 1.4e-05 1_[+1]_71 chr21:19944526-19944606 2.3e-05 39_[+1]_33 chr1:173578056-173578136 2.3e-05 41_[+1]_31 chr12:91249459-91249539 2.3e-05 25_[+1]_47 chr18:26737486-26737566 2.3e-05 14_[+1]_58 chr5:179442507-179442587 2.3e-05 53_[+1]_19 chr17:44202475-44202555 3.2e-05 7_[+1]_65 chr7:25846972-25847052 3.2e-05 10_[+1]_62 chr17:79223175-79223255 3.2e-05 72_[+1] chr1:221873566-221873646 4.2e-05 34_[+1]_38 chr3:65245813-65245893 4.2e-05 2_[+1]_70 chr12:68618542-68618622 4.2e-05 4_[+1]_68 chr1:170886686-170886766 4.2e-05 3_[+1]_69 chr1:48884584-48884664 4.2e-05 10_[+1]_62 chr6:34334273-34334353 4.8e-05 3_[+1]_69 chr1:220074340-220074420 4.8e-05 7_[+1]_65 chr7:130895534-130895614 4.8e-05 34_[+1]_38 chr12:114450977-11445105 4.8e-05 5_[+1]_67 chr8:2985494-2985574 4.8e-05 15_[+1]_57 chr7:37296048-37296128 4.8e-05 62_[+1]_10 chr1:53266839-53266919 4.8e-05 53_[+1]_19 chr1:20952692-20952772 4.8e-05 [+1]_72 chr6:159725848-159725928 4.8e-05 12_[+1]_60 chr4:80937096-80937176 4.8e-05 59_[+1]_13 chr21:38645931-38646011 5.4e-05 16_[+1]_56 chr10:63491546-63491626 5.4e-05 2_[+1]_70 chr12:120288330-12028841 5.4e-05 7_[+1]_65 chr2:119527453-119527533 5.4e-05 12_[+1]_60 chr10:16984901-16984981 5.4e-05 3_[+1]_69 chr11:77489319-77489399 6e-05 1_[+1]_71 chr6:170802612-170802692 6e-05 35_[+1]_37 chr4:35791680-35791760 6e-05 2_[+1]_70 chr12:31650901-31650981 8.5e-05 2_[+1]_70 chr16:13759888-13759968 8.5e-05 14_[+1]_58 chr16:19798224-19798304 8.5e-05 1_[+1]_71 chr2:57059078-57059158 8.5e-05 3_[+1]_69 chr2:216516283-216516363 8.5e-05 11_[+1]_61 chr1:235265030-235265110 8.5e-05 6_[+1]_66 chr7:122037561-122037641 8.5e-05 4_[+1]_68 chr12:119806031-11980611 8.5e-05 6_[+1]_66 chr6:73760084-73760164 8.5e-05 3_[+1]_69 chr15:100551661-10055174 0.00011 4_[+1]_68 chr14:90767261-90767341 0.00013 1_[+1]_71 chr8:4032292-4032372 0.00014 1_[+1]_71 chr11:116309930-11631001 0.00016 15_[+1]_57 chr2:45642941-45643021 0.0002 [+1]_72 chr10:20203089-20203169 0.0002 [+1]_72 chr9:107008360-107008440 0.00022 7_[+1]_65 chr3:34059411-34059491 0.00022 20_[+1]_52 chr7:125460697-125460777 0.00022 7_[+1]_65 chr9:97917651-97917731 0.00025 [+1]_72 chr5:44779432-44779512 0.00025 21_[+1]_51 chr7:113250787-113250867 0.00029 [+1]_72 chr1:216649176-216649256 0.00029 50_[+1]_22 chr2:65939147-65939227 0.00032 10_[+1]_62 chr10:32144095-32144175 0.00041 38_[+1]_34 chr6:6624645-6624725 0.00043 [+1]_72 chr4:59278230-59278310 0.00043 25_[+1]_47 chr17:79910089-79910169 0.00046 20_[+1]_52 chr12:66424260-66424340 0.00048 10_[+1]_62 chr5:70962987-70963067 0.00053 12_[+1]_60 chr4:55039881-55039961 0.00053 [+1]_72 chr4:2301457-2301537 0.00053 14_[+1]_58 chr7:79419420-79419500 0.00056 33_[+1]_39 chr13:93231392-93231472 0.00061 7_[+1]_65 chr7:130111982-130112062 0.00077 8_[+1]_64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAGGAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGAAGGAA width=8 seqs=90 chr21:41442233-41442313 ( 1) GGAAGGAA 1 chr8:128824966-128825046 ( 8) GGAAGGAA 1 chr4:138749184-138749264 ( 65) GGAAGGAA 1 chr1:51480707-51480787 ( 4) GGAAGGAA 1 chr20:38658234-38658314 ( 61) GGAAGGAA 1 chr18:8661414-8661494 ( 1) GGAAGGAA 1 chr16:69205617-69205697 ( 8) GGAAGGAA 1 chr4:112619685-112619765 ( 13) GGAAGGAA 1 chr5:22058858-22058938 ( 51) GGAAGGAA 1 chr12:64599542-64599622 ( 26) GGAAGGAA 1 chr6:4710583-4710663 ( 47) GGAAGGAA 1 chr3:26805272-26805352 ( 48) GGAAGGAA 1 chr12:68618329-68618409 ( 45) GGAAGGAA 1 chr18:614376-614456 ( 5) GGAAGGAA 1 chr20:31165974-31166054 ( 3) GGAAGGAA 1 chr12:26770743-26770823 ( 1) GGAAGGAA 1 chr2:174543083-174543163 ( 55) GGAAGGAA 1 chr7:100896671-100896751 ( 9) GGAAGGAA 1 chr9:107301729-107301809 ( 4) GGAAGGAA 1 chr4:185574130-185574210 ( 65) GGAAGGAA 1 chr3:165194290-165194370 ( 66) GGAAGGAA 1 chr1:171144183-171144263 ( 6) GGAAGGAA 1 chr1:107469956-107470036 ( 4) GGAAGGAA 1 chr8:58844465-58844545 ( 57) GGAAGGAA 1 chr6:50870224-50870304 ( 2) GGAAGGAA 1 chr21:19944526-19944606 ( 40) GGAAGGAG 1 chr1:173578056-173578136 ( 42) GGAAGGAG 1 chr12:91249459-91249539 ( 26) GGAAGGAG 1 chr18:26737486-26737566 ( 15) GGAAGGAG 1 chr5:179442507-179442587 ( 54) GGAAGGAG 1 chr17:44202475-44202555 ( 8) GGAGGGAA 1 chr7:25846972-25847052 ( 11) GGAGGGAA 1 chr17:79223175-79223255 ( 73) GGAGGGAA 1 chr1:221873566-221873646 ( 35) GGAAGGGA 1 chr3:65245813-65245893 ( 3) GGAAGGGA 1 chr12:68618542-68618622 ( 5) GGAAGGGA 1 chr1:170886686-170886766 ( 4) GGAAGGGA 1 chr1:48884584-48884664 ( 11) GGAAGGGA 1 chr6:34334273-34334353 ( 4) GGAGGGAG 1 chr1:220074340-220074420 ( 8) GGAGGGAG 1 chr7:130895534-130895614 ( 35) GGAGGGAG 1 chr12:114450977-11445105 ( 6) GGAGGGAG 1 chr8:2985494-2985574 ( 16) GGAGGGAG 1 chr7:37296048-37296128 ( 63) GGAGGGAG 1 chr1:53266839-53266919 ( 54) GGAGGGAG 1 chr1:20952692-20952772 ( 1) GGAGGGAG 1 chr6:159725848-159725928 ( 13) GGAGGGAG 1 chr4:80937096-80937176 ( 60) GGAGGGAG 1 chr21:38645931-38646011 ( 17) GGAAGGGG 1 chr10:63491546-63491626 ( 3) GGAAGGGG 1 chr12:120288330-12028841 ( 8) GGAAGGGG 1 chr2:119527453-119527533 ( 13) GGAAGGGG 1 chr10:16984901-16984981 ( 4) GGAAGGGG 1 chr11:77489319-77489399 ( 2) GGAGGGGA 1 chr6:170802612-170802692 ( 36) GGAGGGGA 1 chr4:35791680-35791760 ( 3) GGAGGGGA 1 chr12:31650901-31650981 ( 3) GGAAAGAA 1 chr16:13759888-13759968 ( 15) GGAAAGAA 1 chr16:19798224-19798304 ( 2) GGAAAGAA 1 chr2:57059078-57059158 ( 4) GGAAAGAA 1 chr2:216516283-216516363 ( 12) GGAAAGAA 1 chr1:235265030-235265110 ( 7) GGAAAGAA 1 chr7:122037561-122037641 ( 5) GGAAAGAA 1 chr12:119806031-11980611 ( 7) GGAGGGGG 1 chr6:73760084-73760164 ( 4) GGAAAGAA 1 chr15:100551661-10055174 ( 5) GGAGAGAA 1 chr14:90767261-90767341 ( 2) GGAAAGGA 1 chr8:4032292-4032372 ( 2) GGAGAGAG 1 chr11:116309930-11631001 ( 16) GGAAGAAA 1 chr2:45642941-45643021 ( 1) GGAGAGGA 1 chr10:20203089-20203169 ( 1) AGAAGGAA 1 chr9:107008360-107008440 ( 8) GGGAGGAA 1 chr3:34059411-34059491 ( 21) GGAAGAAG 1 chr7:125460697-125460777 ( 8) GGGAGGAA 1 chr9:97917651-97917731 ( 1) GGAGGAAA 1 chr5:44779432-44779512 ( 22) GGAGGAAA 1 chr7:113250787-113250867 ( 1) GGAGAGGG 1 chr1:216649176-216649256 ( 51) TGAAGGAA 1 chr2:65939147-65939227 ( 11) AGAGGGAA 1 chr10:32144095-32144175 ( 39) TGAGGGAA 1 chr6:6624645-6624725 ( 1) GGATGGGA 1 chr4:59278230-59278310 ( 26) GGATGGGA 1 chr17:79910089-79910169 ( 21) AGAAGGGG 1 chr12:66424260-66424340 ( 11) TGAGGGAG 1 chr5:70962987-70963067 ( 13) GGAAAAAA 1 chr4:55039881-55039961 ( 1) GGAAAAAA 1 chr4:2301457-2301537 ( 15) GGAAAAAA 1 chr7:79419420-79419500 ( 34) GAAAGGAA 1 chr13:93231392-93231472 ( 8) AGAAAGAA 1 chr7:130111982-130112062 ( 9) AGAAAGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAGGAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.7059 E= 1.0e-063 -246 -1314 219 -315 -478 -1314 231 -1314 167 -1314 -317 -1314 117 -1314 53 -373 -62 -1314 200 -1314 -198 -1314 221 -1314 134 -1314 16 -1314 119 -1314 59 -1314 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAGGAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 90 E= 1.0e-063 0.055556 0.000000 0.911111 0.033333 0.011111 0.000000 0.988889 0.000000 0.977778 0.000000 0.022222 0.000000 0.688889 0.000000 0.288889 0.022222 0.200000 0.000000 0.800000 0.000000 0.077778 0.000000 0.922222 0.000000 0.777778 0.000000 0.222222 0.000000 0.700000 0.000000 0.300000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAGGAA MEME-1 regular expression -------------------------------------------------------------------------------- GGA[AG][GA]G[AG][AG] -------------------------------------------------------------------------------- Time 5.06 secs. ******************************************************************************** ******************************************************************************** MOTIF TYCCTTCC MEME-2 width = 8 sites = 68 llr = 603 E-value = 3.5e-054 ******************************************************************************** -------------------------------------------------------------------------------- Motif TYCCTTCC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 36a8:1a8 probability G :::::::: matrix T 74:2a9:2 bits 2.3 * * 2.1 * * 1.9 * * * 1.6 *** ** Relative 1.4 ****** Entropy 1.2 ******* (12.8 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCCCTTCC consensus CT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYCCTTCC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:3737769-3737849 72 7.89e-06 cccctcccct tcccttcc c chr6:34942120-34942200 5 7.89e-06 ctct tcccttcc ccttccattt chr10:54008787-54008867 63 7.89e-06 ctccttccct tcccttcc TTCCTCTCTT chr17:63848412-63848492 13 7.89e-06 tcccttccct tcccttcc ctttccttcc chr1:241838296-241838376 63 7.89e-06 cttccttttc tcccttcc tccttcctgc chr1:79837677-79837757 1 7.89e-06 . tcccttcc cttcccttca chr9:38735004-38735084 21 7.89e-06 GTCAGAGAcc tcccttcc tccctccctt chr4:125580130-125580210 73 7.89e-06 CTTTTCTTTC tcccttcc chr21:31122472-31122552 69 7.89e-06 cttctctccc tcccttcc ttcc chr7:121519769-121519849 52 7.89e-06 ACTAccttcc tcccttcc ttttttcttt chr18:33960322-33960402 71 7.89e-06 TTCGGTCATc tcccttcc tc chr1:164729583-164729663 20 7.89e-06 GGCATTtccc tcccttcc tccctcccac chr1:180054097-180054177 59 7.89e-06 TGTTGCTGCT TCccttcc ccctttcctc chr3:34059411-34059491 67 7.89e-06 ttccccttcc tcccttcc tctctt chr2:146576868-146576948 59 7.89e-06 cctccctccc tcccttcc cttcttcctt chr2:134345920-134346000 6 7.89e-06 cttcc tcccttcc ctctttcctt chr8:137968045-137968125 8 7.89e-06 tcctccc tcccttcc ttccttcctc chr21:38411980-38412060 17 7.89e-06 ccctctccct tcccttcc ccctttcccc chr1:239763926-239764006 48 7.89e-06 cttccctctc tcccttcc ttcctttctt chr16:5348678-5348758 12 7.89e-06 cctcctttct tcccttcc tttcTTTCAT chr5:3278960-3279040 6 7.89e-06 tcctt tcccttcc tgcccacttc chr4:26211246-26211326 12 7.89e-06 cctctctccc tcccttcc tccttccctc chr6:161874792-161874872 24 1.32e-05 cccctcccct ccccttcc cctctcccCA chr2:18676493-18676573 73 1.32e-05 tttctccttt ccccttcc chr17:51059872-51059952 60 1.32e-05 tcctcctctt ccccttcc tcctccttcc chr12:78357549-78357629 60 1.32e-05 TGTTctcctt ccccttcc ttccttcctt chr12:24020886-24020966 62 2.50e-05 CCTTCATTTc ttccttcc tccctttttt chr6:140697485-140697565 65 2.50e-05 caTTTTCCTT ttccttcc ttccttcc chr1:190618817-190618897 13 2.50e-05 ccttccttct ttccttcc ttccctcctt chr2:116644945-116645025 65 2.50e-05 CTTTTCTTTc ttccttcc ttcttttt chr9:107008360-107008440 59 2.50e-05 TTTGTCTTCT TTCCTTCC TGCTTTCTTG chr17:68180506-68180586 66 2.50e-05 CAtcctttcc ttccttcc tccctct chr1:196380057-196380137 62 2.50e-05 ccctccttct ttccttcc ttcctcattg chr5:78682658-78682738 72 2.50e-05 CTTAATttcc ttccttcc t chr1:14433545-14433625 10 2.50e-05 cttccttcc ttccttcc ttcatctctc chr15:94265568-94265648 73 2.50e-05 GATGAATAAC Ttccttcc chr7:66931534-66931614 20 2.50e-05 ccctcctttc ttccttcc ttcttctctc chr5:128147656-128147736 11 2.50e-05 aatttcttcc ttccttcc ctccttcATT chr7:150342900-150342980 62 3.29e-05 ctctctttTt ctccttcc cctcctccct chr11:100924550-10092463 4 3.29e-05 ccc ctccttcc tttctCTGTG chr7:73036111-73036191 1 3.81e-05 . tccctccc tccatctcct chr19:59096923-59097003 68 6.17e-05 tcctttcctt tcctttcc tttcc chr3:149482253-149482333 61 6.17e-05 CCTATGGGTC TCCCTTCT GCATTAATCc chr17:79910089-79910169 52 6.53e-05 GTCCCCACGG CCCCTCCC TTTGTCTCCC chr7:90815463-90815543 7 6.53e-05 tctcct cccctccc ctctcctctc chr1:51480707-51480787 68 8.11e-05 ataattaaaa ccctttcc acaaa chr6:4710583-4710663 69 8.11e-05 CATTTAGATC CCCTTTcc agac chr1:117412439-117412519 38 8.11e-05 cctcagactg ccccttct gctgcattct chr6:166319389-166319469 43 1.24e-04 AACAATTTTT TTCCTTCT TTCTTTGttc chr8:124624231-124624311 73 1.24e-04 TAATGTCTTT TTCCTTCT chr1:107469956-107470036 64 1.24e-04 CTTCATACAC TTCTTTCC TCAGAAAAC chr2:160473746-160473826 71 1.32e-04 CTTTGTTTTT ACCCTTCC AC chr7:132712334-132712414 58 1.32e-04 GTGTTTAGGG ACCCTTCC AACTGTATAC chr1:170886686-170886766 69 1.32e-04 TAAAAGTCAA ACCCTTCC TTTC chr13:108930889-10893096 63 1.38e-04 tctcttcctc ctcctccc cttctcttcc chr12:78357766-78357846 9 1.38e-04 cctcctcc ctcctccc tcctcctccc chr19:28775147-28775227 20 1.61e-04 TCTGCCCAAA CTCCTTCT TCCCAAAGTC chr21:31322460-31322540 72 1.61e-04 ccctgcctcc ctctttcc c chr11:116309930-11631001 52 1.61e-04 ACTGCTTGAT CTCCTTCT AGACAGTTGC chr4:59278230-59278310 69 1.61e-04 ctctttcttc ctctttcc cctt chr3:65245813-65245893 59 1.89e-04 TAGCAAGGAG TCCCTCCT GTCTAAGTCT chr21:39628691-39628771 65 2.07e-04 CATCATGGTC TCCTTTCT CAGATTCC chr7:100896671-100896751 51 2.07e-04 ATTAGCATGC TCCTTTCT TTtttctttt chr15:67882633-67882713 62 2.07e-04 AGGTCTTGAG tcctttct ctttttttcc chr17:68180830-68180910 1 2.53e-04 . ttcttccc ACACATTTGT chr2:3738065-3738145 3 2.85e-04 ct ttctttct gccttagtgg chr4:114315412-114315492 69 2.85e-04 ACTATGTAGT TTCTTTCT TGCC chr1:216649176-216649256 68 2.85e-04 AACAAATGAT TTCTTTCT CATTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYCCTTCC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:3737769-3737849 7.9e-06 71_[+2]_1 chr6:34942120-34942200 7.9e-06 4_[+2]_68 chr10:54008787-54008867 7.9e-06 62_[+2]_10 chr17:63848412-63848492 7.9e-06 12_[+2]_60 chr1:241838296-241838376 7.9e-06 62_[+2]_10 chr1:79837677-79837757 7.9e-06 [+2]_72 chr9:38735004-38735084 7.9e-06 20_[+2]_52 chr4:125580130-125580210 7.9e-06 72_[+2] chr21:31122472-31122552 7.9e-06 68_[+2]_4 chr7:121519769-121519849 7.9e-06 51_[+2]_21 chr18:33960322-33960402 7.9e-06 70_[+2]_2 chr1:164729583-164729663 7.9e-06 19_[+2]_53 chr1:180054097-180054177 7.9e-06 58_[+2]_14 chr3:34059411-34059491 7.9e-06 66_[+2]_6 chr2:146576868-146576948 7.9e-06 58_[+2]_14 chr2:134345920-134346000 7.9e-06 5_[+2]_67 chr8:137968045-137968125 7.9e-06 7_[+2]_65 chr21:38411980-38412060 7.9e-06 16_[+2]_56 chr1:239763926-239764006 7.9e-06 47_[+2]_25 chr16:5348678-5348758 7.9e-06 11_[+2]_61 chr5:3278960-3279040 7.9e-06 5_[+2]_67 chr4:26211246-26211326 7.9e-06 11_[+2]_61 chr6:161874792-161874872 1.3e-05 23_[+2]_49 chr2:18676493-18676573 1.3e-05 72_[+2] chr17:51059872-51059952 1.3e-05 59_[+2]_13 chr12:78357549-78357629 1.3e-05 59_[+2]_13 chr12:24020886-24020966 2.5e-05 61_[+2]_11 chr6:140697485-140697565 2.5e-05 64_[+2]_8 chr1:190618817-190618897 2.5e-05 12_[+2]_60 chr2:116644945-116645025 2.5e-05 64_[+2]_8 chr9:107008360-107008440 2.5e-05 58_[+2]_14 chr17:68180506-68180586 2.5e-05 65_[+2]_7 chr1:196380057-196380137 2.5e-05 61_[+2]_11 chr5:78682658-78682738 2.5e-05 71_[+2]_1 chr1:14433545-14433625 2.5e-05 9_[+2]_63 chr15:94265568-94265648 2.5e-05 72_[+2] chr7:66931534-66931614 2.5e-05 19_[+2]_53 chr5:128147656-128147736 2.5e-05 10_[+2]_62 chr7:150342900-150342980 3.3e-05 61_[+2]_11 chr11:100924550-10092463 3.3e-05 3_[+2]_69 chr7:73036111-73036191 3.8e-05 [+2]_72 chr19:59096923-59097003 6.2e-05 67_[+2]_5 chr3:149482253-149482333 6.2e-05 60_[+2]_12 chr17:79910089-79910169 6.5e-05 51_[+2]_21 chr7:90815463-90815543 6.5e-05 6_[+2]_66 chr1:51480707-51480787 8.1e-05 67_[+2]_5 chr6:4710583-4710663 8.1e-05 68_[+2]_4 chr1:117412439-117412519 8.1e-05 37_[+2]_35 chr6:166319389-166319469 0.00012 42_[+2]_30 chr8:124624231-124624311 0.00012 72_[+2] chr1:107469956-107470036 0.00012 63_[+2]_9 chr2:160473746-160473826 0.00013 70_[+2]_2 chr7:132712334-132712414 0.00013 57_[+2]_15 chr1:170886686-170886766 0.00013 68_[+2]_4 chr13:108930889-10893096 0.00014 62_[+2]_10 chr12:78357766-78357846 0.00014 8_[+2]_64 chr19:28775147-28775227 0.00016 19_[+2]_53 chr21:31322460-31322540 0.00016 71_[+2]_1 chr11:116309930-11631001 0.00016 51_[+2]_21 chr4:59278230-59278310 0.00016 68_[+2]_4 chr3:65245813-65245893 0.00019 58_[+2]_14 chr21:39628691-39628771 0.00021 64_[+2]_8 chr7:100896671-100896751 0.00021 50_[+2]_22 chr15:67882633-67882713 0.00021 61_[+2]_11 chr17:68180830-68180910 0.00025 [+2]_72 chr2:3738065-3738145 0.00028 2_[+2]_70 chr4:114315412-114315492 0.00028 68_[+2]_4 chr1:216649176-216649256 0.00028 67_[+2]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYCCTTCC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TYCCTTCC width=8 seqs=68 chr2:3737769-3737849 ( 72) TCCCTTCC 1 chr6:34942120-34942200 ( 5) TCCCTTCC 1 chr10:54008787-54008867 ( 63) TCCCTTCC 1 chr17:63848412-63848492 ( 13) TCCCTTCC 1 chr1:241838296-241838376 ( 63) TCCCTTCC 1 chr1:79837677-79837757 ( 1) TCCCTTCC 1 chr9:38735004-38735084 ( 21) TCCCTTCC 1 chr4:125580130-125580210 ( 73) TCCCTTCC 1 chr21:31122472-31122552 ( 69) TCCCTTCC 1 chr7:121519769-121519849 ( 52) TCCCTTCC 1 chr18:33960322-33960402 ( 71) TCCCTTCC 1 chr1:164729583-164729663 ( 20) TCCCTTCC 1 chr1:180054097-180054177 ( 59) TCCCTTCC 1 chr3:34059411-34059491 ( 67) TCCCTTCC 1 chr2:146576868-146576948 ( 59) TCCCTTCC 1 chr2:134345920-134346000 ( 6) TCCCTTCC 1 chr8:137968045-137968125 ( 8) TCCCTTCC 1 chr21:38411980-38412060 ( 17) TCCCTTCC 1 chr1:239763926-239764006 ( 48) TCCCTTCC 1 chr16:5348678-5348758 ( 12) TCCCTTCC 1 chr5:3278960-3279040 ( 6) TCCCTTCC 1 chr4:26211246-26211326 ( 12) TCCCTTCC 1 chr6:161874792-161874872 ( 24) CCCCTTCC 1 chr2:18676493-18676573 ( 73) CCCCTTCC 1 chr17:51059872-51059952 ( 60) CCCCTTCC 1 chr12:78357549-78357629 ( 60) CCCCTTCC 1 chr12:24020886-24020966 ( 62) TTCCTTCC 1 chr6:140697485-140697565 ( 65) TTCCTTCC 1 chr1:190618817-190618897 ( 13) TTCCTTCC 1 chr2:116644945-116645025 ( 65) TTCCTTCC 1 chr9:107008360-107008440 ( 59) TTCCTTCC 1 chr17:68180506-68180586 ( 66) TTCCTTCC 1 chr1:196380057-196380137 ( 62) TTCCTTCC 1 chr5:78682658-78682738 ( 72) TTCCTTCC 1 chr1:14433545-14433625 ( 10) TTCCTTCC 1 chr15:94265568-94265648 ( 73) TTCCTTCC 1 chr7:66931534-66931614 ( 20) TTCCTTCC 1 chr5:128147656-128147736 ( 11) TTCCTTCC 1 chr7:150342900-150342980 ( 62) CTCCTTCC 1 chr11:100924550-10092463 ( 4) CTCCTTCC 1 chr7:73036111-73036191 ( 1) TCCCTCCC 1 chr19:59096923-59097003 ( 68) TCCTTTCC 1 chr3:149482253-149482333 ( 61) TCCCTTCT 1 chr17:79910089-79910169 ( 52) CCCCTCCC 1 chr7:90815463-90815543 ( 7) CCCCTCCC 1 chr1:51480707-51480787 ( 68) CCCTTTCC 1 chr6:4710583-4710663 ( 69) CCCTTTCC 1 chr1:117412439-117412519 ( 38) CCCCTTCT 1 chr6:166319389-166319469 ( 43) TTCCTTCT 1 chr8:124624231-124624311 ( 73) TTCCTTCT 1 chr1:107469956-107470036 ( 64) TTCTTTCC 1 chr2:160473746-160473826 ( 71) ACCCTTCC 1 chr7:132712334-132712414 ( 58) ACCCTTCC 1 chr1:170886686-170886766 ( 69) ACCCTTCC 1 chr13:108930889-10893096 ( 63) CTCCTCCC 1 chr12:78357766-78357846 ( 9) CTCCTCCC 1 chr19:28775147-28775227 ( 20) CTCCTTCT 1 chr21:31322460-31322540 ( 72) CTCTTTCC 1 chr11:116309930-11631001 ( 52) CTCCTTCT 1 chr4:59278230-59278310 ( 69) CTCTTTCC 1 chr3:65245813-65245893 ( 59) TCCCTCCT 1 chr21:39628691-39628771 ( 65) TCCTTTCT 1 chr7:100896671-100896751 ( 51) TCCTTTCT 1 chr15:67882633-67882713 ( 62) TCCTTTCT 1 chr17:68180830-68180910 ( 1) TTCTTCCC 1 chr2:3738065-3738145 ( 3) TTCTTTCT 1 chr4:114315412-114315492 ( 69) TTCTTTCT 1 chr1:216649176-216649256 ( 68) TTCTTTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYCCTTCC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2284 E= 3.5e-054 -279 34 -1273 125 -1273 161 -1273 42 -1273 234 -1273 -1273 -1273 203 -1273 -63 -1273 -1273 -1273 176 -1273 -94 -1273 160 -1273 234 -1273 -1273 -1273 203 -1273 -63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYCCTTCC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 68 E= 3.5e-054 0.044118 0.250000 0.000000 0.705882 0.000000 0.602941 0.000000 0.397059 0.000000 1.000000 0.000000 0.000000 0.000000 0.808824 0.000000 0.191176 0.000000 0.000000 0.000000 1.000000 0.000000 0.102941 0.000000 0.897059 0.000000 1.000000 0.000000 0.000000 0.000000 0.808824 0.000000 0.191176 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYCCTTCC MEME-2 regular expression -------------------------------------------------------------------------------- [TC][CT]CCTTCC -------------------------------------------------------------------------------- Time 8.82 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCTCCCT MEME-3 width = 8 sites = 38 llr = 366 E-value = 7.1e-027 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCTCCCT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::1 pos.-specific C 9a7:aa72 probability G :::::::: matrix T 1:3a::37 bits 2.3 * ** 2.1 * ** 1.9 ** *** 1.6 ** *** Relative 1.4 ** *** Entropy 1.2 ******* (13.9 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCCTCCCT consensus T TC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTCCCT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:63848412-63848492 39 5.28e-06 ccctttcctt ccctccct ccctccttcc chr1:241838296-241838376 1 5.28e-06 . ccctccct ctcttccttc chr9:38735004-38735084 59 5.28e-06 tccttcctct ccctccct tccttctttt chr7:73036111-73036191 64 5.28e-06 ccctccatct ccctccct ccctccttc chr2:134345920-134346000 56 5.28e-06 ttccctctct ccctccct cccacccttc chr8:137968045-137968125 54 5.28e-06 tttcttcctt ccctccct tccttcttcc chr1:14433545-14433625 41 5.28e-06 cctcttccct ccctccct cACATTCTCA chr5:3278960-3279040 59 5.28e-06 tgttcctcct ccctccct tccttcctcc chr7:66931534-66931614 2 5.28e-06 t ccctccct ccctcctttc chr4:26211246-26211326 57 5.28e-06 ttccgtctcc ccctccct tcctccttcc chr2:3737769-3737849 63 8.81e-06 ttttctgatc ccctcccc ttcccttccc chr6:161874792-161874872 15 8.81e-06 tcctcccctc ccctcccc tccccttccc chr10:54008787-54008867 9 8.81e-06 ctcccctt ccctcccc ttccctcccc chr1:79837677-79837757 72 8.81e-06 cccttccttt ccctcccc t chr7:90815463-90815543 68 8.81e-06 tcctctcctc ccctcccc tctcc chr6:34942120-34942200 70 2.46e-05 ttccccttcc ccttccct tcc chr1:190618817-190618897 35 2.46e-05 ctccttcctt ccttccct cctcccttct chr7:121519769-121519849 70 2.46e-05 ttttttcttt ccctcctt cct chr1:164729583-164729663 49 2.46e-05 cttctttgct ccctcctt tcctccttcc chr1:196380057-196380137 52 2.46e-05 tcccttactc ccctcctt ctttccttcc chr3:34059411-34059491 51 2.46e-05 ATCCCTCACT CCCTcctt ccccttcctc chr2:146576868-146576948 32 2.46e-05 tccatcccct ccttccct ttcttctttc chr6:166319389-166319469 68 2.46e-05 ttccttttta ccttccct ttttc chr21:38411980-38412060 56 2.46e-05 cttccctctc ccttccct ctcccttccc chr1:239763926-239764006 37 2.46e-05 TTATCtccct ccttccct ctctcccttc chr16:5348678-5348758 1 2.46e-05 . ccctcctt tcttcccttc chr17:51059872-51059952 72 3.52e-05 ccttcctcct ccttcccc c chr13:108930889-10893096 30 3.52e-05 tcttcctacc ccctcctc tcctcctcct chr12:78357766-78357846 34 3.52e-05 ccctcctctt ccctcctc ctcctttttc chr21:31122472-31122552 54 4.70e-05 tccttctctc ccttcctt ctctccctcc chr12:78357549-78357629 70 4.70e-05 ccccttcctt ccttcctt cct chr6:140697485-140697565 24 6.03e-05 TAACAAACCT CCCTCcca aaccaaacca chr7:150342900-150342980 72 6.03e-05 ctccttcccc tcctccct c chr13:93231392-93231472 53 6.03e-05 AGAAGGGCCG TCCTCCCT GAATTATAGA chr17:68180506-68180586 48 6.82e-05 TGTATGTTCT CCTTCCTC CAtcctttcc chr21:31322460-31322540 58 1.13e-04 tttctTTctt tcttccct gcctccctct chr8:28433794-28433874 60 1.13e-04 TCTTACTTGG CCCTCCTA ATTGGGTGTT chr2:18676493-18676573 57 1.59e-04 TCAAGCCAcc tcttcctt tctcctttcc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTCCCT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:63848412-63848492 5.3e-06 38_[+3]_34 chr1:241838296-241838376 5.3e-06 [+3]_72 chr9:38735004-38735084 5.3e-06 58_[+3]_14 chr7:73036111-73036191 5.3e-06 63_[+3]_9 chr2:134345920-134346000 5.3e-06 55_[+3]_17 chr8:137968045-137968125 5.3e-06 53_[+3]_19 chr1:14433545-14433625 5.3e-06 40_[+3]_32 chr5:3278960-3279040 5.3e-06 58_[+3]_14 chr7:66931534-66931614 5.3e-06 1_[+3]_71 chr4:26211246-26211326 5.3e-06 56_[+3]_16 chr2:3737769-3737849 8.8e-06 62_[+3]_10 chr6:161874792-161874872 8.8e-06 14_[+3]_58 chr10:54008787-54008867 8.8e-06 8_[+3]_64 chr1:79837677-79837757 8.8e-06 71_[+3]_1 chr7:90815463-90815543 8.8e-06 67_[+3]_5 chr6:34942120-34942200 2.5e-05 69_[+3]_3 chr1:190618817-190618897 2.5e-05 34_[+3]_38 chr7:121519769-121519849 2.5e-05 69_[+3]_3 chr1:164729583-164729663 2.5e-05 48_[+3]_24 chr1:196380057-196380137 2.5e-05 51_[+3]_21 chr3:34059411-34059491 2.5e-05 50_[+3]_22 chr2:146576868-146576948 2.5e-05 31_[+3]_41 chr6:166319389-166319469 2.5e-05 67_[+3]_5 chr21:38411980-38412060 2.5e-05 55_[+3]_17 chr1:239763926-239764006 2.5e-05 36_[+3]_36 chr16:5348678-5348758 2.5e-05 [+3]_72 chr17:51059872-51059952 3.5e-05 71_[+3]_1 chr13:108930889-10893096 3.5e-05 29_[+3]_43 chr12:78357766-78357846 3.5e-05 33_[+3]_39 chr21:31122472-31122552 4.7e-05 53_[+3]_19 chr12:78357549-78357629 4.7e-05 69_[+3]_3 chr6:140697485-140697565 6e-05 23_[+3]_49 chr7:150342900-150342980 6e-05 71_[+3]_1 chr13:93231392-93231472 6e-05 52_[+3]_20 chr17:68180506-68180586 6.8e-05 47_[+3]_25 chr21:31322460-31322540 0.00011 57_[+3]_15 chr8:28433794-28433874 0.00011 59_[+3]_13 chr2:18676493-18676573 0.00016 56_[+3]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTCCCT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCTCCCT width=8 seqs=38 chr17:63848412-63848492 ( 39) CCCTCCCT 1 chr1:241838296-241838376 ( 1) CCCTCCCT 1 chr9:38735004-38735084 ( 59) CCCTCCCT 1 chr7:73036111-73036191 ( 64) CCCTCCCT 1 chr2:134345920-134346000 ( 56) CCCTCCCT 1 chr8:137968045-137968125 ( 54) CCCTCCCT 1 chr1:14433545-14433625 ( 41) CCCTCCCT 1 chr5:3278960-3279040 ( 59) CCCTCCCT 1 chr7:66931534-66931614 ( 2) CCCTCCCT 1 chr4:26211246-26211326 ( 57) CCCTCCCT 1 chr2:3737769-3737849 ( 63) CCCTCCCC 1 chr6:161874792-161874872 ( 15) CCCTCCCC 1 chr10:54008787-54008867 ( 9) CCCTCCCC 1 chr1:79837677-79837757 ( 72) CCCTCCCC 1 chr7:90815463-90815543 ( 68) CCCTCCCC 1 chr6:34942120-34942200 ( 70) CCTTCCCT 1 chr1:190618817-190618897 ( 35) CCTTCCCT 1 chr7:121519769-121519849 ( 70) CCCTCCTT 1 chr1:164729583-164729663 ( 49) CCCTCCTT 1 chr1:196380057-196380137 ( 52) CCCTCCTT 1 chr3:34059411-34059491 ( 51) CCCTCCTT 1 chr2:146576868-146576948 ( 32) CCTTCCCT 1 chr6:166319389-166319469 ( 68) CCTTCCCT 1 chr21:38411980-38412060 ( 56) CCTTCCCT 1 chr1:239763926-239764006 ( 37) CCTTCCCT 1 chr16:5348678-5348758 ( 1) CCCTCCTT 1 chr17:51059872-51059952 ( 72) CCTTCCCC 1 chr13:108930889-10893096 ( 30) CCCTCCTC 1 chr12:78357766-78357846 ( 34) CCCTCCTC 1 chr21:31122472-31122552 ( 54) CCTTCCTT 1 chr12:78357549-78357629 ( 70) CCTTCCTT 1 chr6:140697485-140697565 ( 24) CCCTCCCA 1 chr7:150342900-150342980 ( 72) TCCTCCCT 1 chr13:93231392-93231472 ( 53) TCCTCCCT 1 chr17:68180506-68180586 ( 48) CCTTCCTC 1 chr21:31322460-31322540 ( 58) TCTTCCCT 1 chr8:28433794-28433874 ( 60) CCCTCCTA 1 chr2:18676493-18676573 ( 57) TCTTCCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTCCCT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.9532 E= 7.1e-027 -1189 218 -1189 -149 -1189 234 -1189 -1189 -1189 179 -1189 9 -1189 -1189 -1189 175 -1189 234 -1189 -1189 -1189 234 -1189 -1189 -1189 179 -1189 9 -254 26 -1189 126 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTCCCT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 38 E= 7.1e-027 0.000000 0.894737 0.000000 0.105263 0.000000 1.000000 0.000000 0.000000 0.000000 0.684211 0.000000 0.315789 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.684211 0.000000 0.315789 0.052632 0.236842 0.000000 0.710526 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTCCCT MEME-3 regular expression -------------------------------------------------------------------------------- CC[CT]TCC[CT][TC] -------------------------------------------------------------------------------- Time 12.48 secs. ******************************************************************************** ******************************************************************************** MOTIF YYCCTTCC MEME-4 width = 8 sites = 36 llr = 316 E-value = 4.6e-011 ******************************************************************************** -------------------------------------------------------------------------------- Motif YYCCTTCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :1:::::: pos.-specific C 4499:29a probability G :::::::: matrix T 6511a81: bits 2.3 * 2.1 ** 1.9 *** ** 1.6 *** ** Relative 1.4 *** ** Entropy 1.2 ****** (12.7 bits) 0.9 * ****** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTCCTTCC consensus CC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYCCTTCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:34942120-34942200 45 5.28e-06 catttccctt ccccttcc ccttccattc chr10:54008787-54008867 43 5.28e-06 ccccttccct ccccttcc ctctccttcc chr3:34059411-34059491 59 5.28e-06 CTCCCTcctt ccccttcc tcccttcctc chr21:38411980-38412060 32 5.28e-06 tccccctttc ccccttcc ctctcccttc chr17:63848412-63848492 3 1.32e-05 ct tcccttcc cttcccttcc chr1:79837677-79837757 41 1.32e-05 tcccttccct tcccttcc cttcccttcc chr9:38735004-38735084 33 1.32e-05 ccttcctccc tcccttcc tccttccttc chr2:134345920-134346000 35 1.32e-05 cttccctcct tcccttcc ttcttccctc chr5:3278960-3279040 22 1.32e-05 cctgcccact tcccttcc cttcctcccc chr4:26211246-26211326 36 1.32e-05 cctctctccc tcccttcc tccttccgtc chr1:190618817-190618897 25 2.11e-05 ccttccttcc ctccttcc ttccttccct chr17:51059872-51059952 30 2.11e-05 AGTCATCAGT ctccttcc tcctcctcct chr7:73036111-73036191 14 2.11e-05 ctccctccat ctccttcc ctctccctcc chr1:164729583-164729663 59 2.11e-05 ccctcctttc ctccttcc atccctcctc chr6:140697485-140697565 73 3.29e-05 TTttccttcc ttccttcc chr1:241838296-241838376 12 3.29e-05 cctccctctc ttccttcc tttcttcttc chr1:196380057-196380137 32 3.29e-05 cctccctctc ttccttcc tttcccttac chr2:146576868-146576948 10 3.29e-05 ctaccttcc ttccttcc tccctccatc chr8:137968045-137968125 16 3.29e-05 cctcccttcc ttccttcc tccctcactt chr1:14433545-14433625 2 3.29e-05 c ttccttcc ttccttcctt chr7:90815463-90815543 47 3.64e-05 ctcctctcct cccctccc ctctcctctc chr6:161874792-161874872 4 4.70e-05 ttc ctcctccc ctcccctccc chr13:108930889-10893096 43 4.70e-05 tcctctcctc ctcctccc cttctcttcc chr12:78357766-78357846 19 4.70e-05 ctcctccctc ctcctccc tcctcttccc chr1:239763926-239764006 72 5.48e-05 tcttctccct ttcctccc c chr7:150342900-150342980 45 7.09e-05 gttttctctt ccctttcc tctctttTtc chr1:180054097-180054177 67 7.09e-05 CTTCccttcc ccctttcc tctttc chr19:59096923-59097003 58 1.03e-04 TAAtttcttt tcctttcc tttcctttcc chr7:121519769-121519849 44 1.03e-04 TCTTCTCAAC TAccttcc tcccttcctt chr17:68180506-68180586 58 1.03e-04 CCTTCCTCCA tcctttcc ttccttcctc chr11:100924550-10092463 69 1.03e-04 GCAAATGCCT TACCTTCC TACT chr2:160473746-160473826 51 1.26e-04 ACCCCCAGAA TCTCTTCC AACTTTGTTT chr5:128147656-128147736 3 1.81e-04 aa tttcttcc ttccttccct chr7:66931534-66931614 12 2.05e-04 ccctccctcc ctcctttc ttccttcctt chr19:28775147-28775227 73 2.90e-04 TCCCCACCAT CTTCTCCC chr1:188389467-188389547 44 3.35e-04 CAACAAGAAG ttcctctc cagtttcttt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYCCTTCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:34942120-34942200 5.3e-06 44_[+4]_28 chr10:54008787-54008867 5.3e-06 42_[+4]_30 chr3:34059411-34059491 5.3e-06 58_[+4]_14 chr21:38411980-38412060 5.3e-06 31_[+4]_41 chr17:63848412-63848492 1.3e-05 2_[+4]_70 chr1:79837677-79837757 1.3e-05 40_[+4]_32 chr9:38735004-38735084 1.3e-05 32_[+4]_40 chr2:134345920-134346000 1.3e-05 34_[+4]_38 chr5:3278960-3279040 1.3e-05 21_[+4]_51 chr4:26211246-26211326 1.3e-05 35_[+4]_37 chr1:190618817-190618897 2.1e-05 24_[+4]_48 chr17:51059872-51059952 2.1e-05 29_[+4]_43 chr7:73036111-73036191 2.1e-05 13_[+4]_59 chr1:164729583-164729663 2.1e-05 58_[+4]_14 chr6:140697485-140697565 3.3e-05 72_[+4] chr1:241838296-241838376 3.3e-05 11_[+4]_61 chr1:196380057-196380137 3.3e-05 31_[+4]_41 chr2:146576868-146576948 3.3e-05 9_[+4]_63 chr8:137968045-137968125 3.3e-05 15_[+4]_57 chr1:14433545-14433625 3.3e-05 1_[+4]_71 chr7:90815463-90815543 3.6e-05 46_[+4]_26 chr6:161874792-161874872 4.7e-05 3_[+4]_69 chr13:108930889-10893096 4.7e-05 42_[+4]_30 chr12:78357766-78357846 4.7e-05 18_[+4]_54 chr1:239763926-239764006 5.5e-05 71_[+4]_1 chr7:150342900-150342980 7.1e-05 44_[+4]_28 chr1:180054097-180054177 7.1e-05 66_[+4]_6 chr19:59096923-59097003 0.0001 57_[+4]_15 chr7:121519769-121519849 0.0001 43_[+4]_29 chr17:68180506-68180586 0.0001 57_[+4]_15 chr11:100924550-10092463 0.0001 68_[+4]_4 chr2:160473746-160473826 0.00013 50_[+4]_22 chr5:128147656-128147736 0.00018 2_[+4]_70 chr7:66931534-66931614 0.0002 11_[+4]_61 chr19:28775147-28775227 0.00029 72_[+4] chr1:188389467-188389547 0.00033 43_[+4]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYCCTTCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YYCCTTCC width=8 seqs=36 chr6:34942120-34942200 ( 45) CCCCTTCC 1 chr10:54008787-54008867 ( 43) CCCCTTCC 1 chr3:34059411-34059491 ( 59) CCCCTTCC 1 chr21:38411980-38412060 ( 32) CCCCTTCC 1 chr17:63848412-63848492 ( 3) TCCCTTCC 1 chr1:79837677-79837757 ( 41) TCCCTTCC 1 chr9:38735004-38735084 ( 33) TCCCTTCC 1 chr2:134345920-134346000 ( 35) TCCCTTCC 1 chr5:3278960-3279040 ( 22) TCCCTTCC 1 chr4:26211246-26211326 ( 36) TCCCTTCC 1 chr1:190618817-190618897 ( 25) CTCCTTCC 1 chr17:51059872-51059952 ( 30) CTCCTTCC 1 chr7:73036111-73036191 ( 14) CTCCTTCC 1 chr1:164729583-164729663 ( 59) CTCCTTCC 1 chr6:140697485-140697565 ( 73) TTCCTTCC 1 chr1:241838296-241838376 ( 12) TTCCTTCC 1 chr1:196380057-196380137 ( 32) TTCCTTCC 1 chr2:146576868-146576948 ( 10) TTCCTTCC 1 chr8:137968045-137968125 ( 16) TTCCTTCC 1 chr1:14433545-14433625 ( 2) TTCCTTCC 1 chr7:90815463-90815543 ( 47) CCCCTCCC 1 chr6:161874792-161874872 ( 4) CTCCTCCC 1 chr13:108930889-10893096 ( 43) CTCCTCCC 1 chr12:78357766-78357846 ( 19) CTCCTCCC 1 chr1:239763926-239764006 ( 72) TTCCTCCC 1 chr7:150342900-150342980 ( 45) CCCTTTCC 1 chr1:180054097-180054177 ( 67) CCCTTTCC 1 chr19:59096923-59097003 ( 58) TCCTTTCC 1 chr7:121519769-121519849 ( 44) TACCTTCC 1 chr17:68180506-68180586 ( 58) TCCTTTCC 1 chr11:100924550-10092463 ( 69) TACCTTCC 1 chr2:160473746-160473826 ( 51) TCTCTTCC 1 chr5:128147656-128147736 ( 3) TTTCTTCC 1 chr7:66931534-66931614 ( 12) CTCCTTTC 1 chr19:28775147-28775227 ( 73) CTTCTCCC 1 chr1:188389467-188389547 ( 44) TTCCTCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYCCTTCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.7763 E= 4.6e-011 -1181 117 -1181 91 -246 117 -1181 75 -1181 221 -1181 -183 -1181 217 -1181 -141 -1181 -1181 -1181 175 -1181 -2 -1181 144 -1181 226 -1181 -241 -1181 234 -1181 -1181 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYCCTTCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 4.6e-011 0.000000 0.444444 0.000000 0.555556 0.055556 0.444444 0.000000 0.500000 0.000000 0.916667 0.000000 0.083333 0.000000 0.888889 0.000000 0.111111 0.000000 0.000000 0.000000 1.000000 0.000000 0.194444 0.000000 0.805556 0.000000 0.944444 0.000000 0.055556 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYCCTTCC MEME-4 regular expression -------------------------------------------------------------------------------- [TC][TC]CCTTCC -------------------------------------------------------------------------------- Time 16.06 secs. ******************************************************************************** ******************************************************************************** MOTIF AAGGRAGG MEME-5 width = 8 sites = 57 llr = 436 E-value = 1.6e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAGGRAGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A 89115a13 pos.-specific C ::::2::: probability G 21994:97 matrix T :::::::: bits 2.3 2.1 1.9 * 1.6 ** ** Relative 1.4 *** ** Entropy 1.2 **** *** (11.0 bits) 0.9 **** *** 0.7 **** *** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAGGAAGG consensus G G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGGRAGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:220074340-220074420 21 9.17e-06 gggagggaga aagggagg aGATGACATA chr9:132716135-132716215 17 9.17e-06 aaaaatagaa aagggagg ctccacaaag chr5:22058858-22058938 41 9.17e-06 gagggaggaa aagggagg aaggaaggaa chr1:173578056-173578136 4 9.17e-06 ggg aagggagg ggaagggagg chr2:174543083-174543163 9 9.17e-06 ggggaaag aagggagg aaggaaggga chr4:35791680-35791760 15 9.17e-06 aggggaggac aagggagg agaagagagg chr21:41442233-41442313 23 2.32e-05 agaaggaaag aaggaagg tagggaagga chr4:138749184-138749264 24 2.32e-05 aaggaagggg aaggaagg gaaaggaagg chr20:38658234-38658314 50 2.32e-05 aagaggatgg aaggaagg aagggaagga chr12:64599542-64599622 16 2.32e-05 ggaaaaaggg aaggaagg aaggaaggaa chr6:4710583-4710663 37 2.32e-05 ggagggaagg aaggaagg aaggaaggaa chr3:26805272-26805352 62 2.32e-05 ggaagtgagg aaggaagg aaagaaggaa chr4:185574130-185574210 32 2.32e-05 gaagggaagg aaggaagg aaagaaggga chr1:107469956-107470036 18 2.32e-05 ggaaggaagg aaggaagg aaAAATTAGC chr8:58844465-58844545 36 2.32e-05 gaaaggaaag aaggaagg aaggaaaatg chr1:221873566-221873646 45 3.83e-05 GGAAGGGACA GAGGGAGG CAATATACCT chr7:37296048-37296128 53 3.83e-05 GTGTAGGAGG GAGGGAGG ATGGAGGGAG chr17:79223175-79223255 56 3.83e-05 gagggagaag gagggagg gagaaggagg chr6:6624645-6624725 29 3.83e-05 tggaatTAGA AAGGCAGG TCTTAACTTT chr3:165194290-165194370 23 3.83e-05 aggaaggagg gagggagg gaaagaggga chr15:100551661-10055174 15 3.83e-05 ggagagaaca aaggcagg caggaagATT chr6:170802612-170802692 50 4.74e-05 gggaggagga gaggaagg tgaggaggaT chr10:63491546-63491626 29 6.15e-05 TTCTTTTTTA AAGGGAGA TCTTTTAGTA chr4:114315412-114315492 41 6.15e-05 TCTCTATAAA AAGGGAGA CTCATCAAGT chr18:26737486-26737566 4 6.15e-05 agg aagggaga gagggaagga chr16:19798224-19798304 11 8.29e-05 aggaaagaaa aaggaaga aatggaagAA chr9:107008360-107008440 18 8.29e-05 gggaggaaga aaggaaga aaAAGGAAAG chr1:159613026-159613106 42 8.89e-05 ctcaggagct gaggcagg agaatggcat chr21:19944526-19944606 65 9.49e-05 agaaggagaa aggggagg agGAAGTT chr1:53266839-53266919 42 1.04e-04 ATCTGCTCTC AGGGAAGG CTGAGGAGGG chr6:34334273-34334353 13 1.27e-04 gggagggagg gagggaga gaAGGTAGTG chr6:21448866-21448946 24 1.27e-04 TAAAAATAAC AAGGCAGA CACACTTTAA chr21:38645931-38646011 8 1.41e-04 ggaaatg gaggaaga gggaaggggt chr1:20952692-20952772 14 1.41e-04 gggagggatg gaggaagA AAAGGtagag chr6:109385693-109385773 71 1.69e-04 GAAAgaagag aagagagg ag chr12:31650901-31650981 19 2.12e-04 aaagagagga aagaaagg aaaagaaaag chr8:2985494-2985574 1 2.12e-04 . aaggaaag aagggaggga chr4:112619685-112619765 3 2.12e-04 gg aagaaagg aaggaaggaa chr11:116309930-11631001 1 2.12e-04 . AAGGAAAG ACGAAAAGGA chr10:16984901-16984981 13 2.12e-04 gggaagggga aaggaaag gaaAAATGTA chr5:179442507-179442587 41 2.28e-04 gaaaggagta ggggaagg agtagggaag chr8:97262943-97263023 54 2.73e-04 AATTTAGATC AAAGAAGG TCTATAACAA chr12:68618329-68618409 35 2.73e-04 TTGTTATGGg aaagaagg aaggaaggaa chr2:45642941-45643021 54 2.73e-04 CTTATCATGG GAGGCAGA GAGAGTTGAA chr19:39251604-39251684 4 3.42e-04 GAT Aagacagg tggatctcgt chr12:68618542-68618622 17 4.17e-04 aagggagaga aagagaga cttagaatag chr1:48884584-48884664 2 4.17e-04 A AAGGGAAA GGGAAGGGAA chr9:107301729-107301809 15 5.05e-04 gaaggaaaag aaggaaaA TCTCTGCATT chr7:134510058-134510138 10 5.35e-04 TCTCATTCC AGGGCAGA GTTGTTAAGA chr20:31165974-31166054 36 5.35e-04 aactgataaa agggcaga gatgggattt chr5:39006897-39006977 20 5.62e-04 AATAGGGTAG GAGACAGG ACTAGAATAG chr3:65245813-65245893 11 6.02e-04 agggaaggga aAAGGAGA TGAGGTACCT chr12:119806031-11980611 28 6.63e-04 agAAGATAGA AAAGaaga agacggctct chr13:90543213-90543293 3 6.63e-04 at agggaaag gttttctaat chr7:156578992-156579072 3 6.63e-04 aa aaagaaga aaAAGGTTAG chr1:168115527-168115607 9 8.16e-04 ggacagaa aagagaag aaaaaaggag chr2:119527453-119527533 2 8.69e-04 g aagaaaag ggaggaaggg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGGRAGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:220074340-220074420 9.2e-06 20_[+5]_52 chr9:132716135-132716215 9.2e-06 16_[+5]_56 chr5:22058858-22058938 9.2e-06 40_[+5]_32 chr1:173578056-173578136 9.2e-06 3_[+5]_69 chr2:174543083-174543163 9.2e-06 8_[+5]_64 chr4:35791680-35791760 9.2e-06 14_[+5]_58 chr21:41442233-41442313 2.3e-05 22_[+5]_50 chr4:138749184-138749264 2.3e-05 23_[+5]_49 chr20:38658234-38658314 2.3e-05 49_[+5]_23 chr12:64599542-64599622 2.3e-05 15_[+5]_57 chr6:4710583-4710663 2.3e-05 36_[+5]_36 chr3:26805272-26805352 2.3e-05 61_[+5]_11 chr4:185574130-185574210 2.3e-05 31_[+5]_41 chr1:107469956-107470036 2.3e-05 17_[+5]_55 chr8:58844465-58844545 2.3e-05 35_[+5]_37 chr1:221873566-221873646 3.8e-05 44_[+5]_28 chr7:37296048-37296128 3.8e-05 52_[+5]_20 chr17:79223175-79223255 3.8e-05 55_[+5]_17 chr6:6624645-6624725 3.8e-05 28_[+5]_44 chr3:165194290-165194370 3.8e-05 22_[+5]_50 chr15:100551661-10055174 3.8e-05 14_[+5]_58 chr6:170802612-170802692 4.7e-05 49_[+5]_23 chr10:63491546-63491626 6.1e-05 28_[+5]_44 chr4:114315412-114315492 6.1e-05 40_[+5]_32 chr18:26737486-26737566 6.1e-05 3_[+5]_69 chr16:19798224-19798304 8.3e-05 10_[+5]_62 chr9:107008360-107008440 8.3e-05 17_[+5]_55 chr1:159613026-159613106 8.9e-05 41_[+5]_31 chr21:19944526-19944606 9.5e-05 64_[+5]_8 chr1:53266839-53266919 0.0001 41_[+5]_31 chr6:34334273-34334353 0.00013 12_[+5]_60 chr6:21448866-21448946 0.00013 23_[+5]_49 chr21:38645931-38646011 0.00014 7_[+5]_65 chr1:20952692-20952772 0.00014 13_[+5]_59 chr6:109385693-109385773 0.00017 70_[+5]_2 chr12:31650901-31650981 0.00021 18_[+5]_54 chr8:2985494-2985574 0.00021 [+5]_72 chr4:112619685-112619765 0.00021 2_[+5]_70 chr11:116309930-11631001 0.00021 [+5]_72 chr10:16984901-16984981 0.00021 12_[+5]_60 chr5:179442507-179442587 0.00023 40_[+5]_32 chr8:97262943-97263023 0.00027 53_[+5]_19 chr12:68618329-68618409 0.00027 34_[+5]_38 chr2:45642941-45643021 0.00027 53_[+5]_19 chr19:39251604-39251684 0.00034 3_[+5]_69 chr12:68618542-68618622 0.00042 16_[+5]_56 chr1:48884584-48884664 0.00042 1_[+5]_71 chr9:107301729-107301809 0.00051 14_[+5]_58 chr7:134510058-134510138 0.00053 9_[+5]_63 chr20:31165974-31166054 0.00053 35_[+5]_37 chr5:39006897-39006977 0.00056 19_[+5]_53 chr3:65245813-65245893 0.0006 10_[+5]_62 chr12:119806031-11980611 0.00066 27_[+5]_45 chr13:90543213-90543293 0.00066 2_[+5]_70 chr7:156578992-156579072 0.00066 2_[+5]_70 chr1:168115527-168115607 0.00082 8_[+5]_64 chr2:119527453-119527533 0.00087 1_[+5]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGGRAGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAGGRAGG width=8 seqs=57 chr1:220074340-220074420 ( 21) AAGGGAGG 1 chr9:132716135-132716215 ( 17) AAGGGAGG 1 chr5:22058858-22058938 ( 41) AAGGGAGG 1 chr1:173578056-173578136 ( 4) AAGGGAGG 1 chr2:174543083-174543163 ( 9) AAGGGAGG 1 chr4:35791680-35791760 ( 15) AAGGGAGG 1 chr21:41442233-41442313 ( 23) AAGGAAGG 1 chr4:138749184-138749264 ( 24) AAGGAAGG 1 chr20:38658234-38658314 ( 50) AAGGAAGG 1 chr12:64599542-64599622 ( 16) AAGGAAGG 1 chr6:4710583-4710663 ( 37) AAGGAAGG 1 chr3:26805272-26805352 ( 62) AAGGAAGG 1 chr4:185574130-185574210 ( 32) AAGGAAGG 1 chr1:107469956-107470036 ( 18) AAGGAAGG 1 chr8:58844465-58844545 ( 36) AAGGAAGG 1 chr1:221873566-221873646 ( 45) GAGGGAGG 1 chr7:37296048-37296128 ( 53) GAGGGAGG 1 chr17:79223175-79223255 ( 56) GAGGGAGG 1 chr6:6624645-6624725 ( 29) AAGGCAGG 1 chr3:165194290-165194370 ( 23) GAGGGAGG 1 chr15:100551661-10055174 ( 15) AAGGCAGG 1 chr6:170802612-170802692 ( 50) GAGGAAGG 1 chr10:63491546-63491626 ( 29) AAGGGAGA 1 chr4:114315412-114315492 ( 41) AAGGGAGA 1 chr18:26737486-26737566 ( 4) AAGGGAGA 1 chr16:19798224-19798304 ( 11) AAGGAAGA 1 chr9:107008360-107008440 ( 18) AAGGAAGA 1 chr1:159613026-159613106 ( 42) GAGGCAGG 1 chr21:19944526-19944606 ( 65) AGGGGAGG 1 chr1:53266839-53266919 ( 42) AGGGAAGG 1 chr6:34334273-34334353 ( 13) GAGGGAGA 1 chr6:21448866-21448946 ( 24) AAGGCAGA 1 chr21:38645931-38646011 ( 8) GAGGAAGA 1 chr1:20952692-20952772 ( 14) GAGGAAGA 1 chr6:109385693-109385773 ( 71) AAGAGAGG 1 chr12:31650901-31650981 ( 19) AAGAAAGG 1 chr8:2985494-2985574 ( 1) AAGGAAAG 1 chr4:112619685-112619765 ( 3) AAGAAAGG 1 chr11:116309930-11631001 ( 1) AAGGAAAG 1 chr10:16984901-16984981 ( 13) AAGGAAAG 1 chr5:179442507-179442587 ( 41) GGGGAAGG 1 chr8:97262943-97263023 ( 54) AAAGAAGG 1 chr12:68618329-68618409 ( 35) AAAGAAGG 1 chr2:45642941-45643021 ( 54) GAGGCAGA 1 chr19:39251604-39251684 ( 4) AAGACAGG 1 chr12:68618542-68618622 ( 17) AAGAGAGA 1 chr1:48884584-48884664 ( 2) AAGGGAAA 1 chr9:107301729-107301809 ( 15) AAGGAAAA 1 chr7:134510058-134510138 ( 10) AGGGCAGA 1 chr20:31165974-31166054 ( 36) AGGGCAGA 1 chr5:39006897-39006977 ( 20) GAGACAGG 1 chr3:65245813-65245893 ( 11) AAAGGAGA 1 chr12:119806031-11980611 ( 28) AAAGAAGA 1 chr13:90543213-90543293 ( 3) AGGGAAAG 1 chr7:156578992-156579072 ( 3) AAAGAAGA 1 chr1:168115527-168115607 ( 9) AAGAGAAG 1 chr2:119527453-119527533 ( 2) AAGAAAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGGRAGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.55676 E= 1.6e-007 137 -1248 8 -1248 155 -1248 -92 -1248 -180 -1248 219 -1248 -113 -1248 211 -1248 68 -32 81 -1248 171 -1248 -1248 -1248 -113 -1248 211 -1248 4 -1248 178 -1248 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGGRAGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 57 E= 1.6e-007 0.789474 0.000000 0.210526 0.000000 0.894737 0.000000 0.105263 0.000000 0.087719 0.000000 0.912281 0.000000 0.140351 0.000000 0.859649 0.000000 0.491228 0.157895 0.350877 0.000000 1.000000 0.000000 0.000000 0.000000 0.140351 0.000000 0.859649 0.000000 0.315789 0.000000 0.684211 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGGRAGG MEME-5 regular expression -------------------------------------------------------------------------------- [AG]AGG[AG]AG[GA] -------------------------------------------------------------------------------- Time 19.60 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:50870224-50870304 8.90e-02 1_[+1(1.40e-05)]_71 chr7:156578992-156579072 2.71e-01 80 chr4:26211246-26211326 2.64e-06 8_[+3(5.28e-06)]_2_[+4(2.11e-05)]_6_\ [+3(5.28e-06)]_2_[+4(2.11e-05)]_6_[+3(5.28e-06)]_2_[+4(2.11e-05)]_6 chr8:58844465-58844545 3.09e-03 9_[+1(1.40e-05)]_[+1(1.40e-05)]_4_\ [+1(8.49e-05)]_[+1(1.40e-05)]_7_[+1(1.40e-05)]_2_[+5(3.83e-05)]_10 chr13:90543213-90543293 4.58e-01 80 chr4:80937096-80937176 2.12e-02 59_[+1(4.75e-05)]_13 chr6:73760084-73760164 3.43e-02 3_[+1(8.49e-05)]_69 chr5:128147656-128147736 4.64e-05 12_[+3(2.46e-05)]_60 chr7:66931534-66931614 1.43e-05 1_[+3(5.28e-06)]_[+3(2.46e-05)]_2_\ [+2(2.50e-05)]_53 chr2:184141706-184141786 1.65e-01 80 chr5:179442507-179442587 1.26e-02 42_[+1(2.32e-05)]_3_[+1(2.32e-05)]_\ 19 chr5:3278960-3279040 2.64e-06 5_[+2(7.89e-06)]_8_[+2(7.89e-06)]_1_\ [+4(5.48e-05)]_20_[+3(5.28e-06)]_3_[+4(5.48e-05)]_3 chr18:39317345-39317425 1.00e+00 80 chr15:86535622-86535702 9.98e-01 80 chr18:26737486-26737566 6.31e-03 1_[+1(4.15e-05)]_5_[+1(2.32e-05)]_\ 58 chr1:117412439-117412519 2.07e-02 37_[+2(8.11e-05)]_35 chr15:100551661-10055174 7.53e-03 14_[+5(3.83e-05)]_58 chr15:89587007-89587087 9.43e-01 80 chr10:50228849-50228929 6.66e-01 80 chr1:78733347-78733427 9.29e-01 80 chr12:66424260-66424340 4.77e-01 80 chr7:79419420-79419500 3.56e-01 80 chr7:130111982-130112062 4.59e-01 80 chr14:67596662-67596742 3.87e-01 80 chr1:48884584-48884664 9.40e-03 10_[+1(4.15e-05)]_62 chr12:119806031-11980611 4.76e-02 6_[+1(8.49e-05)]_66 chr1:107469956-107470036 3.61e-07 3_[+1(1.40e-05)]_[+1(1.40e-05)]_\ [+1(1.40e-05)]_53 chr7:90815463-90815543 5.10e-05 7_[+3(8.81e-06)]_12_[+3(8.81e-06)]_\ 12_[+3(8.81e-06)]_12_[+3(8.81e-06)]_5 chr2:65939147-65939227 2.86e-02 80 chr6:109385693-109385773 1.26e-01 80 chr6:159725848-159725928 9.52e-03 6_[+5(3.83e-05)]_66 chr3:5145578-5145658 9.61e-01 80 chr1:106279135-106279215 7.62e-01 80 chr10:16984901-16984981 2.87e-04 3_[+1(5.35e-05)]_69 chr2:102450477-102450557 6.95e-01 80 chr2:51428616-51428696 9.99e-01 80 chr15:94265568-94265648 8.77e-04 72_[+2(2.50e-05)] chr1:171144183-171144263 7.11e-04 5_[+1(1.40e-05)]_67 chr1:235465711-235465791 9.99e-01 80 chr21:31933012-31933092 4.43e-01 80 chr15:67882633-67882713 1.69e-02 80 chr1:170886686-170886766 2.48e-07 3_[+1(4.15e-05)]_59_[+3(4.70e-05)]_\ 2 chr8:124624231-124624311 1.59e-02 80 chr11:100924550-10092463 8.68e-06 3_[+4(2.11e-05)]_69 chr2:188177779-188177859 1.60e-01 80 chr21:29546500-29546580 4.43e-02 80 chr7:125460697-125460777 9.97e-03 80 chr7:65589370-65589450 2.67e-01 80 chr3:165194290-165194370 3.09e-03 3_[+5(3.83e-05)]_2_[+1(2.32e-05)]_4_\ [+1(3.24e-05)]_12_[+1(9.89e-05)]_8_[+1(1.40e-05)]_[+1(4.15e-05)]_3 chr16:5348678-5348758 9.30e-06 [+3(2.46e-05)]_3_[+2(7.89e-06)]_61 chr16:62191020-62191100 7.13e-02 80 chr4:185574130-185574210 3.09e-03 5_[+1(1.40e-05)]_[+1(1.40e-05)]_4_\ [+1(1.40e-05)]_[+1(1.40e-05)]_5_[+1(8.49e-05)]_[+5(3.83e-05)]_2_\ [+1(1.40e-05)]_[+1(1.40e-05)] chr2:45642685-45642765 9.59e-01 80 chr1:239763926-239764006 3.54e-06 34_[+4(2.11e-05)]_5_[+2(7.89e-06)]_\ 16_[+4(5.48e-05)]_1 chr16:61760202-61760282 7.26e-01 80 chr10:20203089-20203169 1.28e-02 80 chr8:106494986-106495066 9.81e-01 80 chr9:71870671-71870751 3.33e-01 80 chr1:188389467-188389547 3.91e-03 80 chr12:91249459-91249539 3.31e-03 23_[+5(2.32e-05)]_49 chr4:35791680-35791760 4.47e-03 2_[+1(5.95e-05)]_4_[+5(9.17e-06)]_\ 58 chr1:100321754-100321834 9.94e-01 80 chr4:28107931-28108011 8.46e-01 80 chr21:38411980-38412060 4.42e-06 11_[+2(7.89e-06)]_12_[+4(5.28e-06)]_\ 3_[+2(7.89e-06)]_3_[+2(7.89e-06)]_3_[+2(7.89e-06)]_8 chr1:14433545-14433625 3.78e-06 1_[+2(2.50e-05)]_[+2(2.50e-05)]_19_\ [+3(5.28e-06)]_36 chr17:68180830-68180910 7.17e-03 80 chr18:31774231-31774311 8.35e-01 80 chr12:92775794-92775874 9.99e-01 80 chr9:107301729-107301809 1.52e-04 3_[+1(1.40e-05)]_69 chr1:20952692-20952772 1.02e-02 1_[+5(3.83e-05)]_71 chr12:68618542-68618622 1.10e-02 4_[+1(4.15e-05)]_68 chr4:59278230-59278310 6.42e-05 80 chr12:78357549-78357629 4.96e-07 59_[+4(5.28e-06)]_[+2(2.50e-05)]_5 chr7:100896671-100896751 8.65e-07 8_[+1(1.40e-05)]_64 chr10:36536538-36536618 8.42e-01 80 chr8:137968045-137968125 2.64e-06 4_[+3(5.28e-06)]_3_[+2(2.50e-05)]_\ 13_[+3(5.28e-06)]_3_[+2(2.50e-05)]_1_[+2(7.89e-06)]_3_[+2(2.50e-05)]_5 chr19:245466-245546 1.00e+00 80 chr2:119527453-119527533 2.13e-04 6_[+5(9.17e-06)]_66 chr6:166319389-166319469 2.33e-05 67_[+3(2.46e-05)]_5 chr6:6624645-6624725 1.80e-02 28_[+5(3.83e-05)]_44 chr11:116309930-11631001 1.19e-04 13_[+5(8.29e-05)]_59 chr2:174543083-174543163 1.56e-03 2_[+1(8.49e-05)]_4_[+1(1.40e-05)]_1_\ [+1(2.32e-05)]_4_[+1(2.32e-05)]_7_[+1(1.40e-05)]_[+1(1.40e-05)]_5_\ [+1(1.40e-05)]_1 chr3:149482253-149482333 1.15e-02 60_[+2(6.17e-05)]_12 chr2:134345920-134346000 2.64e-06 5_[+2(7.89e-06)]_21_[+2(7.89e-06)]_\ 13_[+3(5.28e-06)]_7_[+2(2.50e-05)]_2 chr12:26770743-26770823 2.93e-03 [+1(1.40e-05)]_72 chr7:122037561-122037641 1.35e-02 4_[+1(8.49e-05)]_1_[+1(9.89e-05)]_\ 59 chr2:45642941-45643021 8.16e-02 80 chr2:146576868-146576948 2.64e-06 5_[+2(2.50e-05)]_[+4(5.48e-05)]_8_\ [+4(2.11e-05)]_13_[+2(3.81e-05)]_[+2(7.89e-06)]_4_[+2(2.50e-05)]_2 chr3:34059411-34059491 3.79e-08 50_[+3(2.46e-05)]_[+4(5.28e-06)]_\ [+2(7.89e-06)]_6 chr13:93231392-93231472 3.73e-04 52_[+3(6.03e-05)]_20 chr4:2301457-2301537 7.61e-02 80 chr6:155443654-155443734 1.00e+00 80 chr6:21448866-21448946 1.49e-01 80 chr1:235265030-235265110 3.29e-02 6_[+1(8.49e-05)]_66 chr11:95466240-95466320 9.47e-01 80 chr19:39251604-39251684 8.10e-02 80 chr17:79223175-79223255 7.98e-03 10_[+1(3.24e-05)]_16_[+1(3.24e-05)]_\ 2_[+1(4.75e-05)]_3_[+5(3.83e-05)]_9_[+1(3.24e-05)] chr2:161349959-161350039 5.95e-02 80 chr20:31165974-31166054 3.08e-03 2_[+1(1.40e-05)]_70 chr18:614376-614456 1.42e-03 4_[+1(1.40e-05)]_68 chr8:59252835-59252915 8.59e-01 80 chr1:180054097-180054177 4.20e-06 58_[+2(7.89e-06)]_[+4(7.09e-05)]_6 chr1:173578056-173578136 2.27e-03 3_[+5(9.17e-06)]_2_[+5(9.17e-06)]_\ [+1(4.15e-05)]_2_[+1(4.15e-05)]_2_[+1(2.32e-05)]_4_[+1(4.15e-05)]_6_\ [+5(6.15e-05)]_5 chr5:78682658-78682738 5.31e-06 67_[+2(2.50e-05)]_5 chr12:120288330-12028841 5.51e-03 7_[+1(5.35e-05)]_65 chr1:196380057-196380137 4.96e-05 19_[+4(5.48e-05)]_4_[+2(2.50e-05)]_\ 12_[+3(2.46e-05)]_2_[+2(2.50e-05)]_11 chr1:164729583-164729663 1.41e-06 16_[+3(5.28e-06)]_3_[+2(3.81e-05)]_\ 13_[+3(2.46e-05)]_2_[+4(2.11e-05)]_2_[+3(3.52e-05)]_4 chr12:68618329-68618409 3.09e-03 32_[+1(8.49e-05)]_[+1(1.40e-05)]_\ [+1(9.89e-05)]_24 chr7:73036111-73036191 1.25e-05 1_[+3(5.28e-06)]_4_[+4(2.11e-05)]_4_\ [+3(5.28e-06)]_16_[+3(5.28e-06)]_6_[+3(5.28e-06)]_[+3(2.46e-05)]_1 chr1:53266839-53266919 3.93e-03 8_[+5(8.29e-05)]_38_[+5(3.83e-05)]_\ 18 chr12:78357766-78357846 3.05e-04 6_[+3(3.52e-05)]_9_[+3(3.52e-05)]_2_\ [+3(3.52e-05)]_39 chr17:68180506-68180586 5.10e-05 45_[+4(2.11e-05)]_8_[+2(2.50e-05)]_\ [+4(5.48e-05)]_3 chr11:21127553-21127633 4.71e-01 80 chr22:17272385-17272465 1.29e-01 80 chr14:90767261-90767341 5.41e-02 80 chr3:26805272-26805352 3.09e-03 4_[+1(1.40e-05)]_6_[+5(2.32e-05)]_\ 17_[+1(1.40e-05)]_8_[+1(1.40e-05)]_[+1(8.49e-05)]_5 chr11:5124472-5124552 4.88e-01 80 chr8:106495294-106495374 4.84e-01 80 chr6:4710583-4710663 1.77e-07 10_[+1(2.32e-05)]_1_[+5(3.83e-05)]_\ 3_[+1(1.40e-05)]_[+1(1.40e-05)]_[+1(1.40e-05)]_14_[+4(7.09e-05)]_4 chr18:33960322-33960402 2.86e-07 70_[+2(7.89e-06)]_2 chr13:108930889-10893096 1.22e-04 29_[+3(3.52e-05)]_5_[+4(4.70e-05)]_\ 12_[+4(4.70e-05)]_10 chr2:9678160-9678240 9.56e-01 80 chr1:216649176-216649256 1.58e-03 80 chr4:153695275-153695355 9.98e-03 80 chr2:216516283-216516363 3.80e-03 11_[+1(8.49e-05)]_61 chr2:57059078-57059158 2.40e-02 3_[+1(8.49e-05)]_69 chr10:77432199-77432279 1.27e-01 80 chr12:64599542-64599622 6.75e-04 1_[+1(1.40e-05)]_4_[+1(1.40e-05)]_\ [+1(1.40e-05)]_2_[+5(3.83e-05)]_41 chr7:121519769-121519849 9.01e-06 51_[+2(7.89e-06)]_12_[+4(2.11e-05)]_\ 1 chr4:114315412-114315492 5.78e-04 40_[+5(6.15e-05)]_32 chr3:65245813-65245893 1.10e-05 2_[+1(4.15e-05)]_70 chr14:91651060-91651140 3.04e-01 80 chr11:97933607-97933687 8.82e-01 80 chr3:1164095-1164175 9.91e-01 80 chr7:132712334-132712414 2.14e-02 80 chr17:56575968-56576048 2.10e-01 80 chr2:160473746-160473826 6.27e-03 80 chr7:113250787-113250867 3.04e-01 80 chr7:35879885-35879965 5.86e-01 80 chr7:37296048-37296128 8.64e-03 48_[+5(3.83e-05)]_7_[+5(3.83e-05)]_\ 9 chr21:31122472-31122552 2.64e-06 51_[+2(7.89e-06)]_6_[+3(5.28e-06)]_\ 7 chr3:168904108-168904188 1.56e-03 3_[+1(1.40e-05)]_1_[+5(3.83e-05)]_3_\ [+1(1.40e-05)]_[+1(1.40e-05)]_[+1(1.40e-05)]_[+1(1.40e-05)]_[+1(4.15e-05)]_\ 1_[+1(4.75e-05)]_[+1(4.75e-05)] chr8:28433794-28433874 3.97e-02 80 chr4:125580130-125580210 1.46e-04 72_[+2(7.89e-06)] chr5:22058858-22058938 1.56e-03 4_[+1(1.40e-05)]_[+1(1.40e-05)]_1_\ [+1(4.75e-05)]_1_[+5(3.83e-05)]_2_[+5(9.17e-06)]_6_[+1(1.40e-05)]_18 chr4:55039881-55039961 5.81e-02 80 chr6:158213042-158213122 7.18e-01 80 chr6:37367670-37367750 8.40e-01 80 chr10:64841275-64841355 9.78e-01 80 chr9:38735004-38735084 2.56e-06 20_[+2(7.89e-06)]_1_[+3(5.28e-06)]_\ 2_[+4(2.11e-05)]_[+4(3.29e-05)]_3_[+3(5.28e-06)]_14 chr21:31322460-31322540 1.57e-03 80 chr9:132716135-132716215 4.49e-02 16_[+5(9.17e-06)]_56 chr7:25846972-25847052 2.80e-02 10_[+1(3.24e-05)]_62 chr1:221873566-221873646 7.02e-04 1_[+1(5.95e-05)]_17_[+1(8.49e-05)]_\ [+1(4.15e-05)]_2_[+5(3.83e-05)]_28 chr4:112619685-112619765 2.23e-03 8_[+1(1.40e-05)]_64 chr8:67458246-67458326 1.35e-01 80 chr4:122595563-122595643 7.14e-01 80 chr17:44202475-44202555 1.02e-04 7_[+1(3.24e-05)]_65 chr5:70962987-70963067 5.18e-01 80 chr1:79837677-79837757 4.03e-06 [+2(7.89e-06)]_12_[+2(7.89e-06)]_2_\ [+2(7.89e-06)]_2_[+2(7.89e-06)]_2_[+2(7.89e-06)]_2_[+2(7.89e-06)]_3_\ [+3(8.81e-06)]_1 chr7:134510058-134510138 2.87e-02 80 chr2:163605518-163605598 6.76e-01 80 chr1:161001832-161001912 1.17e-01 80 chr9:107008360-107008440 4.90e-08 5_[+5(9.17e-06)]_4_[+5(8.29e-05)]_\ 33_[+2(2.50e-05)]_14 chr11:125844336-12584441 1.58e-02 80 chr5:79524173-79524253 5.72e-01 80 chr16:69205617-69205697 7.52e-03 7_[+1(1.40e-05)]_65 chr7:68046624-68046704 7.29e-02 80 chr9:37286670-37286750 9.76e-01 80 chr1:241838296-241838376 2.64e-06 [+3(5.28e-06)]_3_[+2(2.50e-05)]_13_\ [+3(5.28e-06)]_9_[+2(2.50e-05)]_5_[+2(7.89e-06)]_10 chr16:50253462-50253542 7.62e-01 80 chr10:70262792-70262872 9.80e-01 80 chr10:63491546-63491626 4.22e-03 2_[+1(5.35e-05)]_18_[+5(6.15e-05)]_\ 44 chr13:95977951-95978031 8.02e-01 80 chr17:51059872-51059952 2.46e-06 29_[+4(2.11e-05)]_22_[+4(5.28e-06)]_\ 2_[+4(2.11e-05)]_3 chr7:150342900-150342980 5.75e-05 44_[+4(7.09e-05)]_9_[+4(2.11e-05)]_\ 1_[+4(4.70e-05)]_2 chr8:2985494-2985574 8.36e-04 2_[+1(8.49e-05)]_2_[+5(3.83e-05)]_\ 60 chr2:18676493-18676573 1.84e-05 72_[+4(5.28e-06)] chr17:63848412-63848492 2.64e-06 2_[+2(7.89e-06)]_2_[+2(7.89e-06)]_4_\ [+3(2.46e-05)]_6_[+3(5.28e-06)]_7_[+2(7.89e-06)]_10_[+2(7.89e-06)]_1 chr10:49619612-49619692 9.35e-01 80 chr6:50603322-50603402 9.90e-01 80 chr18:8661414-8661494 7.60e-03 [+1(1.40e-05)]_72 chr8:4032292-4032372 4.47e-03 80 chr5:44779432-44779512 3.68e-02 80 chr19:28775147-28775227 3.36e-03 80 chr4:151579577-151579657 9.86e-01 80 chr16:46612250-46612330 2.06e-01 80 chr2:116644945-116645025 5.54e-06 64_[+2(2.50e-05)]_8 chr21:19944526-19944606 1.18e-02 39_[+1(2.32e-05)]_17_[+5(9.49e-05)]_\ 8 chr1:220749258-220749338 1.53e-01 80 chr4:153842567-153842647 5.31e-01 80 chr10:32144095-32144175 1.54e-01 80 chr1:190618817-190618897 3.47e-05 [+2(2.50e-05)]_16_[+4(2.11e-05)]_2_\ [+3(2.46e-05)]_2_[+2(6.17e-05)]_8_[+2(2.50e-05)]_12 chr12:96302466-96302546 8.63e-01 80 chr13:92463360-92463440 9.99e-01 80 chr10:54008787-54008867 1.89e-06 2_[+4(5.28e-06)]_2_[+4(5.28e-06)]_2_\ [+4(5.28e-06)]_2_[+4(5.28e-06)]_2_[+4(5.28e-06)]_7_[+2(7.89e-06)]_1_\ [+2(2.50e-05)]_6 chr16:19798224-19798304 1.32e-03 1_[+1(8.49e-05)]_1_[+5(8.29e-05)]_\ 62 chr12:114450977-11445105 8.82e-03 6_[+5(3.83e-05)]_66 chr2:3738065-3738145 6.64e-02 80 chr2:156858505-156858585 7.75e-01 80 chr10:30949789-30949869 5.58e-01 80 chr8:79100833-79100913 8.73e-01 80 chr6:34942120-34942200 4.42e-06 10_[+4(5.28e-06)]_9_[+4(5.28e-06)]_\ 3_[+2(7.89e-06)]_4_[+4(5.28e-06)]_3_[+4(5.28e-06)]_3_[+2(7.89e-06)] chr6:7296998-7297078 8.35e-01 80 chr5:108676231-108676311 4.97e-02 80 chr20:38658234-38658314 1.56e-03 11_[+1(1.40e-05)]_[+1(8.49e-05)]_\ [+1(1.40e-05)]_12_[+1(1.40e-05)]_5_[+1(1.40e-05)]_2_[+5(3.83e-05)]_2 chr1:51480707-51480787 1.77e-07 3_[+1(1.40e-05)]_56_[+4(7.09e-05)]_\ 5 chr19:59096923-59097003 1.37e-03 57_[+2(6.17e-05)]_2_[+2(6.17e-05)]_\ 5 chr11:98492669-98492749 8.02e-01 80 chr10:38133710-38133790 1.23e-02 80 chr21:39628691-39628771 1.18e-02 80 chr15:40039093-40039173 8.47e-01 80 chr6:161874792-161874872 3.32e-07 9_[+3(8.81e-06)]_6_[+4(5.28e-06)]_\ 49 chr1:174611676-174611756 1.55e-01 80 chr16:13759888-13759968 1.73e-03 14_[+1(8.49e-05)]_58 chr11:25236237-25236317 7.36e-01 80 chr22:17272735-17272815 2.23e-01 80 chr3:23864183-23864263 9.34e-01 80 chr7:130895534-130895614 2.25e-02 34_[+1(4.75e-05)]_38 chr1:168115527-168115607 1.09e-01 80 chr1:28111331-28111411 8.70e-01 80 chr10:26592455-26592535 4.57e-01 80 chr6:170802612-170802692 1.40e-02 14_[+1(5.95e-05)]_13_[+1(5.95e-05)]_\ 6_[+5(4.74e-05)]_23 chr12:31650901-31650981 4.30e-03 2_[+1(8.49e-05)]_5_[+1(8.49e-05)]_\ 57 chr1:159613026-159613106 1.71e-01 41_[+5(8.89e-05)]_31 chr15:87178362-87178442 6.08e-02 80 chr1:220074340-220074420 3.81e-03 8_[+5(3.83e-05)]_4_[+5(9.17e-06)]_\ 52 chr11:77489319-77489399 1.83e-03 1_[+1(5.95e-05)]_71 chr8:97262943-97263023 1.89e-01 80 chr2:32893483-32893563 9.46e-01 80 chr17:79910089-79910169 8.93e-07 52_[+3(5.28e-06)]_20 chr7:144410069-144410149 4.64e-01 80 chr6:140697485-140697565 7.35e-05 22_[+2(3.81e-05)]_34_[+2(2.50e-05)]_\ [+2(2.50e-05)] chr2:3737769-3737849 1.36e-06 62_[+3(8.81e-06)]_1_[+2(7.89e-06)]_\ 1 chr6:34334273-34334353 9.97e-03 [+5(3.83e-05)]_[+5(3.83e-05)]_64 chr6:159384206-159384286 5.29e-01 80 chr21:38645931-38646011 2.84e-03 16_[+1(5.35e-05)]_56 chr5:39006897-39006977 4.56e-01 80 chr1:166365123-166365203 9.14e-01 80 chr4:138749184-138749264 3.09e-03 2_[+1(1.40e-05)]_1_[+1(1.40e-05)]_2_\ [+1(1.40e-05)]_6_[+1(1.40e-05)]_2_[+1(4.15e-05)]_2_[+1(1.40e-05)]_1_\ [+1(1.40e-05)]_8 chr8:128824966-128825046 1.02e-04 7_[+1(1.40e-05)]_65 chr9:97917651-97917731 1.29e-03 80 chr8:38854932-38855012 2.20e-02 80 chr12:24020886-24020966 6.60e-06 61_[+2(2.50e-05)]_11 chrX:122735435-122735515 7.62e-02 80 chr19:55646248-55646328 8.58e-01 80 chr17:48952629-48952709 9.62e-01 80 chr3:15197637-15197717 4.98e-01 80 chr21:41442233-41442313 3.09e-03 [+1(1.40e-05)]_14_[+5(2.32e-05)]_3_\ [+1(2.32e-05)]_8_[+1(2.32e-05)]_4_[+1(2.32e-05)]_11 chr1:17619439-17619519 8.51e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n05.farnam.hpc.yale.internal ********************************************************************************