******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/NR3C1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr1:230907637-230907717 1.0000 80 chr7:100090555-100090635 1.0000 80 chr2:54785691-54785771 1.0000 80 chr14:102512772-10251285 1.0000 80 chr12:108908409-10890848 1.0000 80 chr1:93257298-93257378 1.0000 80 chr11:61472412-61472492 1.0000 80 chr6:33290162-33290242 1.0000 80 chr4:159969322-159969402 1.0000 80 chr17:65289975-65290055 1.0000 80 chrX:153402200-153402280 1.0000 80 chr4:78739633-78739713 1.0000 80 chr1:200590515-200590595 1.0000 80 chr8:99058149-99058229 1.0000 80 chr3:186545579-186545659 1.0000 80 chr8:144853250-144853330 1.0000 80 chr1:89990789-89990869 1.0000 80 chr1:118149618-118149698 1.0000 80 chr17:21454550-21454630 1.0000 80 chr9:99983984-99984064 1.0000 80 chr21:45395552-45395632 1.0000 80 chr16:3200349-3200429 1.0000 80 chr1:44514401-44514481 1.0000 80 chr1:32181727-32181807 1.0000 80 chr7:73493944-73494024 1.0000 80 chr15:20561897-20561977 1.0000 80 chr6:42016971-42017051 1.0000 80 chr22:20772212-20772292 1.0000 80 chr15:85177097-85177177 1.0000 80 chr2:188364833-188364913 1.0000 80 chr12:116714648-11671472 1.0000 80 chr7:93633225-93633305 1.0000 80 chr17:74438843-74438923 1.0000 80 chr8:105633441-105633521 1.0000 80 chr6:142858982-142859062 1.0000 80 chr7:32928925-32929005 1.0000 80 chr11:74460693-74460773 1.0000 80 chr9:95571410-95571490 1.0000 80 chr2:183905484-183905564 1.0000 80 chr1:46872135-46872215 1.0000 80 chr15:75063571-75063651 1.0000 80 chr1:46806030-46806110 1.0000 80 chr11:75099940-75100020 1.0000 80 chr1:23695928-23696008 1.0000 80 chr2:70484564-70484644 1.0000 80 chrX:110925069-110925149 1.0000 80 chr17:43227030-43227110 1.0000 80 chr3:177074270-177074350 1.0000 80 chr17:65989304-65989384 1.0000 80 chr6:31628108-31628188 1.0000 80 chr1:38155754-38155834 1.0000 80 chr22:19547076-19547156 1.0000 80 chr20:49080847-49080927 1.0000 80 chr22:19768625-19768705 1.0000 80 chr1:27951174-27951254 1.0000 80 chr18:8988420-8988500 1.0000 80 chr9:124887584-124887664 1.0000 80 chr6:26103232-26103312 1.0000 80 chr10:46962662-46962742 1.0000 80 chr6:30434155-30434235 1.0000 80 chr17:4737257-4737337 1.0000 80 chr19:16293620-16293700 1.0000 80 chr11:63934199-63934279 1.0000 80 chr11:108368164-10836824 1.0000 80 chr19:18303272-18303352 1.0000 80 chr11:69796247-69796327 1.0000 80 chr1:22349699-22349779 1.0000 80 chr6:20404537-20404617 1.0000 80 chr17:26646401-26646481 1.0000 80 chr10:52338941-52339021 1.0000 80 chr11:63705833-63705913 1.0000 80 chr1:179162940-179163020 1.0000 80 chr7:135194115-135194195 1.0000 80 chr22:23632364-23632444 1.0000 80 chr10:4857459-4857539 1.0000 80 chr21:38937163-38937243 1.0000 80 chr1:16180043-16180123 1.0000 80 chr1:38157262-38157342 1.0000 80 chr2:152267167-152267247 1.0000 80 chr6:15084778-15084858 1.0000 80 chr3:141071353-141071433 1.0000 80 chr11:44560058-44560138 1.0000 80 chr7:16685324-16685404 1.0000 80 chr19:37709457-37709537 1.0000 80 chr19:1001682-1001762 1.0000 80 chr6:41748007-41748087 1.0000 80 chr6:31368016-31368096 1.0000 80 chr16:89767246-89767326 1.0000 80 chr7:120622315-120622395 1.0000 80 chr15:65481638-65481718 1.0000 80 chr5:10317215-10317295 1.0000 80 chr2:242485714-242485794 1.0000 80 chr8:145654348-145654428 1.0000 80 chr10:43905058-43905138 1.0000 80 chr22:19707010-19707090 1.0000 80 chr15:91414310-91414390 1.0000 80 chr7:106634243-106634323 1.0000 80 chr4:139936094-139936174 1.0000 80 chr19:56670526-56670606 1.0000 80 chr16:90039542-90039622 1.0000 80 chr21:44494868-44494948 1.0000 80 chr6:43111354-43111434 1.0000 80 chr1:26718108-26718188 1.0000 80 chr7:108166108-108166188 1.0000 80 chr1:36689280-36689360 1.0000 80 chr10:27445168-27445248 1.0000 80 chr3:14443816-14443896 1.0000 80 chr16:2272938-2273018 1.0000 80 chr2:91737770-91737850 1.0000 80 chr7:98062873-98062953 1.0000 80 chr1:174131072-174131152 1.0000 80 chr9:98279053-98279133 1.0000 80 chr15:89600935-89601015 1.0000 80 chr2:38603721-38603801 1.0000 80 chr2:178106532-178106612 1.0000 80 chr22:20069357-20069437 1.0000 80 chr17:28256531-28256611 1.0000 80 chr22:19200100-19200180 1.0000 80 chr17:43463018-43463098 1.0000 80 chr6:101328821-101328901 1.0000 80 chr13:99852527-99852607 1.0000 80 chr20:61603560-61603640 1.0000 80 chr20:32889876-32889956 1.0000 80 chr6:132600809-132600889 1.0000 80 chr6:2449144-2449224 1.0000 80 chr6:27181318-27181398 1.0000 80 chr2:178589480-178589560 1.0000 80 chr20:47237451-47237531 1.0000 80 chr16:82204216-82204296 1.0000 80 chr1:28696653-28696733 1.0000 80 chr1:236849193-236849273 1.0000 80 chr7:100895269-100895349 1.0000 80 chr3:14962813-14962893 1.0000 80 chr5:39016498-39016578 1.0000 80 chr17:40829728-40829808 1.0000 80 chr22:19764861-19764941 1.0000 80 chr22:21313289-21313369 1.0000 80 chr7:150701240-150701320 1.0000 80 chr7:127849982-127850062 1.0000 80 chr10:82204604-82204684 1.0000 80 chr11:46559384-46559464 1.0000 80 chr3:197807905-197807985 1.0000 80 chr6:35704205-35704285 1.0000 80 chr4:140477298-140477378 1.0000 80 chr7:100449790-100449870 1.0000 80 chr12:51612521-51612601 1.0000 80 chr6:155055609-155055689 1.0000 80 chr1:118077857-118077937 1.0000 80 chr1:37980759-37980839 1.0000 80 chr22:22846019-22846099 1.0000 80 chr4:76498883-76498963 1.0000 80 chr12:120639320-12063940 1.0000 80 chr1:145408080-145408160 1.0000 80 chr1:245025965-245026045 1.0000 80 chr11:65133755-65133835 1.0000 80 chr3:184971443-184971523 1.0000 80 chr22:18359867-18359947 1.0000 80 chr19:42386702-42386782 1.0000 80 chr1:26362581-26362661 1.0000 80 chrX:153775672-153775752 1.0000 80 chr16:2190662-2190742 1.0000 80 chr20:43496357-43496437 1.0000 80 chr11:114132027-11413210 1.0000 80 chr6:107349046-107349126 1.0000 80 chr7:25895996-25896076 1.0000 80 chr9:127274335-127274415 1.0000 80 chr6:99293811-99293891 1.0000 80 chr17:48278093-48278173 1.0000 80 chr19:12891106-12891186 1.0000 80 chr8:66776789-66776869 1.0000 80 chr7:151202212-151202292 1.0000 80 chr10:70310568-70310648 1.0000 80 chr6:30071106-30071186 1.0000 80 chr8:125452577-125452657 1.0000 80 chr6:3070087-3070167 1.0000 80 chr17:58042333-58042413 1.0000 80 chr1:17278347-17278427 1.0000 80 chr1:51699946-51700026 1.0000 80 chr17:49243447-49243527 1.0000 80 chr12:56321178-56321258 1.0000 80 chr17:40976534-40976614 1.0000 80 chr10:74100021-74100101 1.0000 80 chr3:195891552-195891632 1.0000 80 chrX:52964012-52964092 1.0000 80 chrX:67913629-67913709 1.0000 80 chr22:20847906-20847986 1.0000 80 chr2:47550192-47550272 1.0000 80 chr7:100778485-100778565 1.0000 80 chr7:73587993-73588073 1.0000 80 chr18:3703770-3703850 1.0000 80 chr16:89135596-89135676 1.0000 80 chr1:235669389-235669469 1.0000 80 chr20:45310031-45310111 1.0000 80 chr9:111906769-111906849 1.0000 80 chr16:67360918-67360998 1.0000 80 chr19:1546466-1546546 1.0000 80 chr7:152373632-152373712 1.0000 80 chr22:22312798-22312878 1.0000 80 chr17:39835946-39836026 1.0000 80 chr7:128347984-128348064 1.0000 80 chr7:99730380-99730460 1.0000 80 chr14:24901167-24901247 1.0000 80 chr6:30689618-30689698 1.0000 80 chr3:194054601-194054681 1.0000 80 chr2:43446598-43446678 1.0000 80 chr4:109088537-109088617 1.0000 80 chr19:771393-771473 1.0000 80 chr5:118747708-118747788 1.0000 80 chr6:28805523-28805603 1.0000 80 chr7:100157468-100157548 1.0000 80 chr1:174129312-174129392 1.0000 80 chr11:58939244-58939324 1.0000 80 chr19:58132268-58132348 1.0000 80 chr5:112311857-112311937 1.0000 80 chr12:56223125-56223205 1.0000 80 chr19:14897236-14897316 1.0000 80 chr3:141206560-141206640 1.0000 80 chr5:33935066-33935146 1.0000 80 chr10:80955394-80955474 1.0000 80 chr2:70351851-70351931 1.0000 80 chr1:244438661-244438741 1.0000 80 chr7:156741940-156742020 1.0000 80 chr17:38514707-38514787 1.0000 80 chr12:48591701-48591781 1.0000 80 chr16:67515517-67515597 1.0000 80 chr3:47830813-47830893 1.0000 80 chr11:82867024-82867104 1.0000 80 chr1:36023669-36023749 1.0000 80 chr6:27198903-27198983 1.0000 80 chr6:28910931-28911011 1.0000 80 chr6:15122830-15122910 1.0000 80 chr7:151233436-151233516 1.0000 80 chr1:111038770-111038850 1.0000 80 chr22:19159619-19159699 1.0000 80 chr6:99963709-99963789 1.0000 80 chr22:22408452-22408532 1.0000 80 chr5:172214286-172214366 1.0000 80 chr1:224032886-224032966 1.0000 80 chr22:19710553-19710633 1.0000 80 chr16:32817482-32817562 1.0000 80 chr8:92081825-92081905 1.0000 80 chr1:109242125-109242205 1.0000 80 chr19:52050611-52050691 1.0000 80 chr4:56484836-56484916 1.0000 80 chr18:2823300-2823380 1.0000 80 chr13:91034852-91034932 1.0000 80 chr14:106765332-10676541 1.0000 80 chr17:46018412-46018492 1.0000 80 chr22:20979322-20979402 1.0000 80 chr7:1619531-1619611 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_NR3C1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/NR3C1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.239 C 0.26 G 0.272 T 0.229 Background letter frequencies (from file dataset with add-one prior applied): A 0.239 C 0.26 G 0.272 T 0.229 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTTCTTTT MEME-1 width = 8 sites = 33 llr = 299 E-value = 1.6e-011 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTCTTTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::2:1:: pos.-specific C ::16:1:1 probability G :::::1:: matrix T aa92a8a9 bits 2.1 ** * 1.9 ** * * 1.7 ** * * 1.5 *** * ** Relative 1.3 *** * ** Entropy 1.1 *** * ** (13.1 bits) 0.9 *** **** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTCTTTT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCTTTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr18:2823300-2823380 28 8.59e-06 ctttctttcc tttctttt ctttctttcc chr4:56484836-56484916 66 8.59e-06 ttcttctttc tttctttt tcttctc chr6:28910931-28911011 51 8.59e-06 CTGGTGACTG TTTCTTTT GTTGGTTCGT chr5:33935066-33935146 50 8.59e-06 cctttttctc tttctttt cttttctttc chr1:51699946-51700026 4 8.59e-06 ctt tttctttt tctttctttc chr1:17278347-17278427 47 8.59e-06 ttttttcttt tttctttt tttgagacgg chr19:12891106-12891186 72 8.59e-06 tttttttctt tttctttt t chr7:25895996-25896076 21 8.59e-06 tttctttcct tttctttt tttcttgctc chr7:106634243-106634323 15 8.59e-06 tctttctttc tttctttt tctctctctt chr7:120622315-120622395 51 8.59e-06 ttgttgatta tttctttt gctgcccaac chr1:32181727-32181807 38 8.59e-06 CCATGTGGTG tttctttt tttcttttct chr19:1546466-1546546 21 2.40e-05 GAGGGCCCCC tttttttt ggagacagag chr6:155055609-155055689 44 2.40e-05 TGCAATATCT TTTATTTT TACTCGCTCC chr17:40829728-40829808 52 2.40e-05 attttttaaa tttatttt ttgtagaaat chr11:63934199-63934279 69 2.40e-05 TGTGTGtttt tttttttt tttc chr6:26103232-26103312 23 2.40e-05 TGCTATTCTA TTTATTTT TCAAGGGGAT chr21:45395552-45395632 53 2.40e-05 TAATTTTGGG TTTttttt gtttgtttgt chr7:98062873-98062953 44 4.35e-05 tctttctttc tttctttc tttctttctt chr5:10317215-10317295 69 4.35e-05 ccttccttcc tttctttc cttc chr22:19547076-19547156 50 4.35e-05 ACGTGCTGCC TTCCTTTT CTGCATACTG chr7:1619531-1619611 6 5.33e-05 gcctg tttctctt tgtctgacgg chr16:82204216-82204296 57 5.33e-05 TCCAGGTCGT TTTCTCTT CACCAGGACC chr20:43496357-43496437 69 6.35e-05 AACAGGTCTA TTTCTGTT TCAG chr1:245025965-245026045 45 6.35e-05 TATCTCCGCC TTTCTGTT CTGTTTTGCC chr9:98279053-98279133 30 7.24e-05 TACAAGCCTG TTTCTATT AAGCAGTTCC chr7:128347984-128348064 37 1.08e-04 tccttcctcc tttatttc tctctctctc chr7:73587993-73588073 1 1.08e-04 . TTCTTTTT CCAAGGCAAC chr22:19764861-19764941 54 1.08e-04 acatgagctc ttcatttt ttatggctgc chr6:31368016-31368096 23 1.08e-04 GTAAACACAT TTCATTTT CCGTAGACCA chr13:91034852-91034932 32 1.43e-04 TGTTGTTAGT TTTTTGTT GTTGTTATTA chr2:91737770-91737850 63 1.53e-04 tttcatctca tttcttct catctcattt chr11:63705833-63705913 65 1.69e-04 tgcgagttaa tttttatt gagaacgt chr6:20404537-20404617 50 2.03e-04 CCTTTCTCCT TTTCTCTC CTTCATTCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCTTTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr18:2823300-2823380 8.6e-06 27_[+1]_45 chr4:56484836-56484916 8.6e-06 65_[+1]_7 chr6:28910931-28911011 8.6e-06 50_[+1]_22 chr5:33935066-33935146 8.6e-06 49_[+1]_23 chr1:51699946-51700026 8.6e-06 3_[+1]_69 chr1:17278347-17278427 8.6e-06 46_[+1]_26 chr19:12891106-12891186 8.6e-06 71_[+1]_1 chr7:25895996-25896076 8.6e-06 20_[+1]_52 chr7:106634243-106634323 8.6e-06 14_[+1]_58 chr7:120622315-120622395 8.6e-06 50_[+1]_22 chr1:32181727-32181807 8.6e-06 37_[+1]_35 chr19:1546466-1546546 2.4e-05 20_[+1]_52 chr6:155055609-155055689 2.4e-05 43_[+1]_29 chr17:40829728-40829808 2.4e-05 51_[+1]_21 chr11:63934199-63934279 2.4e-05 68_[+1]_4 chr6:26103232-26103312 2.4e-05 22_[+1]_50 chr21:45395552-45395632 2.4e-05 52_[+1]_20 chr7:98062873-98062953 4.4e-05 43_[+1]_29 chr5:10317215-10317295 4.4e-05 68_[+1]_4 chr22:19547076-19547156 4.4e-05 49_[+1]_23 chr7:1619531-1619611 5.3e-05 5_[+1]_67 chr16:82204216-82204296 5.3e-05 56_[+1]_16 chr20:43496357-43496437 6.3e-05 68_[+1]_4 chr1:245025965-245026045 6.3e-05 44_[+1]_28 chr9:98279053-98279133 7.2e-05 29_[+1]_43 chr7:128347984-128348064 0.00011 36_[+1]_36 chr7:73587993-73588073 0.00011 [+1]_72 chr22:19764861-19764941 0.00011 53_[+1]_19 chr6:31368016-31368096 0.00011 22_[+1]_50 chr13:91034852-91034932 0.00014 31_[+1]_41 chr2:91737770-91737850 0.00015 62_[+1]_10 chr11:63705833-63705913 0.00017 64_[+1]_8 chr6:20404537-20404617 0.0002 49_[+1]_23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCTTTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTCTTTT width=8 seqs=33 chr18:2823300-2823380 ( 28) TTTCTTTT 1 chr4:56484836-56484916 ( 66) TTTCTTTT 1 chr6:28910931-28911011 ( 51) TTTCTTTT 1 chr5:33935066-33935146 ( 50) TTTCTTTT 1 chr1:51699946-51700026 ( 4) TTTCTTTT 1 chr1:17278347-17278427 ( 47) TTTCTTTT 1 chr19:12891106-12891186 ( 72) TTTCTTTT 1 chr7:25895996-25896076 ( 21) TTTCTTTT 1 chr7:106634243-106634323 ( 15) TTTCTTTT 1 chr7:120622315-120622395 ( 51) TTTCTTTT 1 chr1:32181727-32181807 ( 38) TTTCTTTT 1 chr19:1546466-1546546 ( 21) TTTTTTTT 1 chr6:155055609-155055689 ( 44) TTTATTTT 1 chr17:40829728-40829808 ( 52) TTTATTTT 1 chr11:63934199-63934279 ( 69) TTTTTTTT 1 chr6:26103232-26103312 ( 23) TTTATTTT 1 chr21:45395552-45395632 ( 53) TTTTTTTT 1 chr7:98062873-98062953 ( 44) TTTCTTTC 1 chr5:10317215-10317295 ( 69) TTTCTTTC 1 chr22:19547076-19547156 ( 50) TTCCTTTT 1 chr7:1619531-1619611 ( 6) TTTCTCTT 1 chr16:82204216-82204296 ( 57) TTTCTCTT 1 chr20:43496357-43496437 ( 69) TTTCTGTT 1 chr1:245025965-245026045 ( 45) TTTCTGTT 1 chr9:98279053-98279133 ( 30) TTTCTATT 1 chr7:128347984-128348064 ( 37) TTTATTTC 1 chr7:73587993-73588073 ( 1) TTCTTTTT 1 chr22:19764861-19764941 ( 54) TTCATTTT 1 chr6:31368016-31368096 ( 23) TTCATTTT 1 chr13:91034852-91034932 ( 32) TTTTTGTT 1 chr2:91737770-91737850 ( 63) TTTCTTCT 1 chr11:63705833-63705913 ( 65) TTTTTATT 1 chr6:20404537-20404617 ( 50) TTTCTCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCTTTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.1193 E= 1.6e-011 -1169 -1169 -1169 213 -1169 -1169 -1169 213 -1169 -110 -1169 194 -39 129 -1169 -33 -1169 -1169 -1169 213 -198 -152 -158 173 -1169 -310 -1169 208 -1169 -110 -1169 194 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCTTTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 1.6e-011 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.121212 0.000000 0.878788 0.181818 0.636364 0.000000 0.181818 0.000000 0.000000 0.000000 1.000000 0.060606 0.090909 0.090909 0.757576 0.000000 0.030303 0.000000 0.969697 0.000000 0.121212 0.000000 0.878788 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCTTTT MEME-1 regular expression -------------------------------------------------------------------------------- TTTCTTTT -------------------------------------------------------------------------------- Time 5.13 secs. ******************************************************************************** ******************************************************************************** MOTIF YYCWKCCT MEME-2 width = 8 sites = 72 llr = 512 E-value = 4.2e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif YYCWKCCT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::3:::: pos.-specific C 46a227a: probability G ::::5::: matrix T 64:533:a bits 2.1 * 1.9 * ** 1.7 * ** 1.5 * ** Relative 1.3 * ** Entropy 1.1 *** *** (10.3 bits) 0.9 *** *** 0.6 **** *** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCCTGCCT consensus CT ATT sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYCWKCCT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:156741940-156742020 58 1.49e-05 caagcgattc tcctgcct cagcctccga chr12:120639320-12063940 72 1.49e-05 cacgccattc tcctgcct c chr20:32889876-32889956 39 1.49e-05 caaacagtcc tcctgcct cagcctcccg chr1:16180043-16180123 54 1.49e-05 caagcgattc tcctgcct cagcctcctg chr1:179162940-179163020 35 1.49e-05 cacgccattc tcctgcct cagccttctg chr1:38155754-38155834 43 1.49e-05 caagcaattc tcctgcct cagcctcccg chr6:15122830-15122910 65 6.06e-05 caactgattg ttctgcct cagccttc chr17:39835946-39836026 53 6.06e-05 gccactgcac tccagcct gggctacaga chr11:65133755-65133835 52 6.06e-05 accattgcac tccagcct gggtgacaga chr16:2272938-2273018 52 6.06e-05 gccactgcac tccagcct gggcgataga chr10:43905058-43905138 50 6.06e-05 ctccattgcg tccagcct gggcgacaga chr10:4857459-4857539 55 6.06e-05 accattgcac tccagcct gggtgactat chr1:46806030-46806110 47 6.06e-05 gcaaatctgc ttctgCCT acaagcctgg chr8:144853250-144853330 24 6.06e-05 CCCCGCTCAG TCCAGCCT TCGCTCGCTG chr12:108908409-10890848 64 6.06e-05 tccaccgcac tccagcct gggcgacac chr18:2823300-2823380 73 7.32e-05 ctttcttcct tccttcct chr7:128347984-128348064 59 7.32e-05 tctctctttc tccttcct ttctctcctt chr5:10317215-10317295 54 7.32e-05 cttccttcct tccttcct tccttccttt chr11:44560058-44560138 14 7.32e-05 TCCCAGGGCC TCCTTCCT CCCCGACGCA chr7:1619531-1619611 70 1.33e-04 tcttctcttt ctctgcct acc chr5:118747708-118747788 73 1.33e-04 TAGATACTAG CTCTGCCT chr22:22846019-22846099 69 1.33e-04 CTGAGCTGTG CCCAGCCT CATT chr6:20404537-20404617 65 1.71e-04 CTCCTTCATT CCCTTCCT CCATGCCT chr17:4737257-4737337 66 1.71e-04 TACTTCTATC TTCTTCCT TCCCCTC chr15:91414310-91414390 12 1.85e-04 CGCCGTGCAG TCCTCCCT CGACCTGGGA chr7:16685324-16685404 18 1.85e-04 TTCGCTTCTC TCCTCCCT CCCGCGGGCT chr12:56223125-56223205 71 2.58e-04 gccactgtac tccagtct gg chr6:28805523-28805603 18 2.58e-04 TTTGTCAGGG CTCAGCCT GCGATGGATC chr10:74100021-74100101 47 2.58e-04 cgccactgca ctcagcct gggcgagaga chr16:2190662-2190742 13 2.58e-04 gccactgcgc tccagtct ggtgacaaag chr1:26362581-26362661 2 2.58e-04 G CTCAGCCT CGGCCGTCTG chr3:184971443-184971523 33 2.58e-04 CTGTctcagc ctcagcct cagtttcctt chr7:150701240-150701320 10 2.58e-04 atggcaaaa ccctgtct ctactaaaaa chr17:43463018-43463098 17 2.58e-04 TCCCTGCTGT TCCCGCCT CGGAATCGCC chr2:178106532-178106612 22 2.58e-04 tgccctccag ccctgtct taaaacaaaa chr1:174131072-174131152 48 2.58e-04 gtccttgcgc ctcagcct ctcgaagtgc chr19:18303272-18303352 12 2.58e-04 atggcaaaac ccctgtct agaccaaaaa chr9:99983984-99984064 43 2.58e-04 GCGCATCCCT TCCCGCCT GAGGGCCCGC chr8:99058149-99058229 42 2.58e-04 cgccactgca ctcagcct gggcgacaga chr4:56484836-56484916 4 3.08e-04 tct tcctttct tctctctttc chr8:66776789-66776869 39 3.08e-04 ggcttgtaaa cccatcct gccaccttac chr22:19768625-19768705 5 3.08e-04 tgta cccatcct catgggtgta chr3:194054601-194054681 9 3.52e-04 GGGAGAAC CCCTCCCT GGCCCTCCAC chr1:37980759-37980839 72 3.52e-04 ttcattcagg ccctccct g chr1:118077857-118077937 44 3.52e-04 cctcgcctct ccctccct cccATTGTTA chr19:1001682-1001762 8 3.52e-04 CTCCAGC CCCTCCCT CTCCTCAGGG chr6:101328821-101328901 44 4.27e-04 GCCTCGCCGT CCCCGCCT CCAGCCAGCT chr5:33935066-33935146 69 4.88e-04 ttttctttct ttctttct ttct chr1:51699946-51700026 15 4.88e-04 ttctttttct ttctttct ttctttcttt chr7:98062873-98062953 65 4.88e-04 ctttctttct ttctttct ttctttct chr7:106634243-106634323 4 4.88e-04 tct ttctttct ttctttcttt chr11:63705833-63705913 19 5.45e-04 ggcacctcgc tcctctct gtgccccctg chr6:33290162-33290242 4 5.45e-04 ACA CCCACCCT ATCCTGAATG chr6:99963709-99963789 24 5.91e-04 tcactgcaac ctccgcct accgggttca chr3:186545579-186545659 71 5.91e-04 tcactgcatc ctccgcct ca chr1:200590515-200590595 56 5.91e-04 cccctgcaac ctccgcct ccctggttca chr7:127849982-127850062 72 6.54e-04 TCCAAAGAGC TTCATTCT G chr22:20069357-20069437 12 6.54e-04 tttgattcct ctctttct tacaccttca chr2:91737770-91737850 33 6.54e-04 atctcatcat ttcctcct ttcattacaa chr6:142858982-142859062 20 6.54e-04 attgcctata cccattct cctcccccac chr6:30071106-30071186 53 7.23e-04 CGCCCCCATC TCCACTCT CAGTAGCCCG chr7:25895996-25896076 59 7.23e-04 tttctttgct ttctctct ctcttttttt chr2:70351851-70351931 63 7.53e-04 cacggtgaaa ccccgtct ctactaaaaa chr2:38603721-38603801 69 7.92e-04 CCCGCGCGAC CTCCTCCT CCGC chr16:89767246-89767326 70 7.92e-04 GAGGGGCGCG CTCCTCCT GGC chr17:46018412-46018492 24 8.63e-04 TTCAACCTCT CCCACTCT CATGCCCTAA chr2:178589480-178589560 59 8.63e-04 GTAAGGTTTT TTCCCCCT TTTCTGGAAA chr11:69796247-69796327 38 8.63e-04 gcccatagga ttcactct gatttccaag chr10:46962662-46962742 22 8.63e-04 CCTGGCCCCT CCCACTCT CTCGGGTGAT chr15:75063571-75063651 24 8.63e-04 GGAGGCGCTG TTCCCCCT CAGACCCGAG chr22:19710553-19710633 27 9.04e-04 ACCGCTTACA CCCCTTCT CCACAGCCCG chr15:65481638-65481718 50 9.89e-04 CTTACCACCC TTCCCTCT GAATCCTTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYCWKCCT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:156741940-156742020 1.5e-05 57_[+2]_15 chr12:120639320-12063940 1.5e-05 71_[+2]_1 chr20:32889876-32889956 1.5e-05 38_[+2]_34 chr1:16180043-16180123 1.5e-05 53_[+2]_19 chr1:179162940-179163020 1.5e-05 34_[+2]_38 chr1:38155754-38155834 1.5e-05 42_[+2]_30 chr6:15122830-15122910 6.1e-05 64_[+2]_8 chr17:39835946-39836026 6.1e-05 52_[+2]_20 chr11:65133755-65133835 6.1e-05 51_[+2]_21 chr16:2272938-2273018 6.1e-05 51_[+2]_21 chr10:43905058-43905138 6.1e-05 49_[+2]_23 chr10:4857459-4857539 6.1e-05 54_[+2]_18 chr1:46806030-46806110 6.1e-05 46_[+2]_26 chr8:144853250-144853330 6.1e-05 23_[+2]_49 chr12:108908409-10890848 6.1e-05 63_[+2]_9 chr18:2823300-2823380 7.3e-05 72_[+2] chr7:128347984-128348064 7.3e-05 58_[+2]_14 chr5:10317215-10317295 7.3e-05 53_[+2]_19 chr11:44560058-44560138 7.3e-05 13_[+2]_59 chr7:1619531-1619611 0.00013 69_[+2]_3 chr5:118747708-118747788 0.00013 72_[+2] chr22:22846019-22846099 0.00013 68_[+2]_4 chr6:20404537-20404617 0.00017 64_[+2]_8 chr17:4737257-4737337 0.00017 65_[+2]_7 chr15:91414310-91414390 0.00019 11_[+2]_61 chr7:16685324-16685404 0.00019 17_[+2]_55 chr12:56223125-56223205 0.00026 70_[+2]_2 chr6:28805523-28805603 0.00026 17_[+2]_55 chr10:74100021-74100101 0.00026 46_[+2]_26 chr16:2190662-2190742 0.00026 12_[+2]_60 chr1:26362581-26362661 0.00026 1_[+2]_71 chr3:184971443-184971523 0.00026 32_[+2]_40 chr7:150701240-150701320 0.00026 9_[+2]_63 chr17:43463018-43463098 0.00026 16_[+2]_56 chr2:178106532-178106612 0.00026 21_[+2]_51 chr1:174131072-174131152 0.00026 47_[+2]_25 chr19:18303272-18303352 0.00026 11_[+2]_61 chr9:99983984-99984064 0.00026 42_[+2]_30 chr8:99058149-99058229 0.00026 41_[+2]_31 chr4:56484836-56484916 0.00031 3_[+2]_69 chr8:66776789-66776869 0.00031 38_[+2]_34 chr22:19768625-19768705 0.00031 4_[+2]_68 chr3:194054601-194054681 0.00035 8_[+2]_64 chr1:37980759-37980839 0.00035 71_[+2]_1 chr1:118077857-118077937 0.00035 43_[+2]_29 chr19:1001682-1001762 0.00035 7_[+2]_65 chr6:101328821-101328901 0.00043 43_[+2]_29 chr5:33935066-33935146 0.00049 68_[+2]_4 chr1:51699946-51700026 0.00049 14_[+2]_58 chr7:98062873-98062953 0.00049 64_[+2]_8 chr7:106634243-106634323 0.00049 3_[+2]_69 chr11:63705833-63705913 0.00054 18_[+2]_54 chr6:33290162-33290242 0.00054 3_[+2]_69 chr6:99963709-99963789 0.00059 23_[+2]_49 chr3:186545579-186545659 0.00059 70_[+2]_2 chr1:200590515-200590595 0.00059 55_[+2]_17 chr7:127849982-127850062 0.00065 71_[+2]_1 chr22:20069357-20069437 0.00065 11_[+2]_61 chr2:91737770-91737850 0.00065 32_[+2]_40 chr6:142858982-142859062 0.00065 19_[+2]_53 chr6:30071106-30071186 0.00072 52_[+2]_20 chr7:25895996-25896076 0.00072 58_[+2]_14 chr2:70351851-70351931 0.00075 62_[+2]_10 chr2:38603721-38603801 0.00079 68_[+2]_4 chr16:89767246-89767326 0.00079 69_[+2]_3 chr17:46018412-46018492 0.00086 23_[+2]_49 chr2:178589480-178589560 0.00086 58_[+2]_14 chr11:69796247-69796327 0.00086 37_[+2]_35 chr10:46962662-46962742 0.00086 21_[+2]_51 chr15:75063571-75063651 0.00086 23_[+2]_49 chr22:19710553-19710633 0.0009 26_[+2]_46 chr15:65481638-65481718 0.00099 49_[+2]_23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYCWKCCT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YYCWKCCT width=8 seqs=72 chr7:156741940-156742020 ( 58) TCCTGCCT 1 chr12:120639320-12063940 ( 72) TCCTGCCT 1 chr20:32889876-32889956 ( 39) TCCTGCCT 1 chr1:16180043-16180123 ( 54) TCCTGCCT 1 chr1:179162940-179163020 ( 35) TCCTGCCT 1 chr1:38155754-38155834 ( 43) TCCTGCCT 1 chr6:15122830-15122910 ( 65) TTCTGCCT 1 chr17:39835946-39836026 ( 53) TCCAGCCT 1 chr11:65133755-65133835 ( 52) TCCAGCCT 1 chr16:2272938-2273018 ( 52) TCCAGCCT 1 chr10:43905058-43905138 ( 50) TCCAGCCT 1 chr10:4857459-4857539 ( 55) TCCAGCCT 1 chr1:46806030-46806110 ( 47) TTCTGCCT 1 chr8:144853250-144853330 ( 24) TCCAGCCT 1 chr12:108908409-10890848 ( 64) TCCAGCCT 1 chr18:2823300-2823380 ( 73) TCCTTCCT 1 chr7:128347984-128348064 ( 59) TCCTTCCT 1 chr5:10317215-10317295 ( 54) TCCTTCCT 1 chr11:44560058-44560138 ( 14) TCCTTCCT 1 chr7:1619531-1619611 ( 70) CTCTGCCT 1 chr5:118747708-118747788 ( 73) CTCTGCCT 1 chr22:22846019-22846099 ( 69) CCCAGCCT 1 chr6:20404537-20404617 ( 65) CCCTTCCT 1 chr17:4737257-4737337 ( 66) TTCTTCCT 1 chr15:91414310-91414390 ( 12) TCCTCCCT 1 chr7:16685324-16685404 ( 18) TCCTCCCT 1 chr12:56223125-56223205 ( 71) TCCAGTCT 1 chr6:28805523-28805603 ( 18) CTCAGCCT 1 chr10:74100021-74100101 ( 47) CTCAGCCT 1 chr16:2190662-2190742 ( 13) TCCAGTCT 1 chr1:26362581-26362661 ( 2) CTCAGCCT 1 chr3:184971443-184971523 ( 33) CTCAGCCT 1 chr7:150701240-150701320 ( 10) CCCTGTCT 1 chr17:43463018-43463098 ( 17) TCCCGCCT 1 chr2:178106532-178106612 ( 22) CCCTGTCT 1 chr1:174131072-174131152 ( 48) CTCAGCCT 1 chr19:18303272-18303352 ( 12) CCCTGTCT 1 chr9:99983984-99984064 ( 43) TCCCGCCT 1 chr8:99058149-99058229 ( 42) CTCAGCCT 1 chr4:56484836-56484916 ( 4) TCCTTTCT 1 chr8:66776789-66776869 ( 39) CCCATCCT 1 chr22:19768625-19768705 ( 5) CCCATCCT 1 chr3:194054601-194054681 ( 9) CCCTCCCT 1 chr1:37980759-37980839 ( 72) CCCTCCCT 1 chr1:118077857-118077937 ( 44) CCCTCCCT 1 chr19:1001682-1001762 ( 8) CCCTCCCT 1 chr6:101328821-101328901 ( 44) CCCCGCCT 1 chr5:33935066-33935146 ( 69) TTCTTTCT 1 chr1:51699946-51700026 ( 15) TTCTTTCT 1 chr7:98062873-98062953 ( 65) TTCTTTCT 1 chr7:106634243-106634323 ( 4) TTCTTTCT 1 chr11:63705833-63705913 ( 19) TCCTCTCT 1 chr6:33290162-33290242 ( 4) CCCACCCT 1 chr6:99963709-99963789 ( 24) CTCCGCCT 1 chr3:186545579-186545659 ( 71) CTCCGCCT 1 chr1:200590515-200590595 ( 56) CTCCGCCT 1 chr7:127849982-127850062 ( 72) TTCATTCT 1 chr22:20069357-20069437 ( 12) CTCTTTCT 1 chr2:91737770-91737850 ( 33) TTCCTCCT 1 chr6:142858982-142859062 ( 20) CCCATTCT 1 chr6:30071106-30071186 ( 53) TCCACTCT 1 chr7:25895996-25896076 ( 59) TTCTCTCT 1 chr2:70351851-70351931 ( 63) CCCCGTCT 1 chr2:38603721-38603801 ( 69) CTCCTCCT 1 chr16:89767246-89767326 ( 70) CTCCTCCT 1 chr17:46018412-46018492 ( 24) CCCACTCT 1 chr2:178589480-178589560 ( 59) TTCCCCCT 1 chr11:69796247-69796327 ( 38) TTCACTCT 1 chr10:46962662-46962742 ( 22) CCCACTCT 1 chr15:75063571-75063651 ( 24) TTCCCCCT 1 chr22:19710553-19710633 ( 27) CCCCTTCT 1 chr15:65481638-65481718 ( 50) TTCCCTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYCWKCCT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.38792 E= 4.2e-004 -1281 77 -1281 128 -1281 123 -1281 77 -1281 194 -1281 -1281 54 -42 -1281 100 -1281 -23 88 28 -1281 142 -1281 42 -1281 194 -1281 -1281 -1281 -1281 -1281 213 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYCWKCCT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 72 E= 4.2e-004 0.000000 0.444444 0.000000 0.555556 0.000000 0.611111 0.000000 0.388889 0.000000 1.000000 0.000000 0.000000 0.347222 0.194444 0.000000 0.458333 0.000000 0.222222 0.500000 0.277778 0.000000 0.694444 0.000000 0.305556 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYCWKCCT MEME-2 regular expression -------------------------------------------------------------------------------- [TC][CT]C[TA][GTC][CT]CT -------------------------------------------------------------------------------- Time 8.99 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAAGAAA MEME-3 width = 8 sites = 50 llr = 400 E-value = 1.2e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAGAAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 99781aa8 pos.-specific C ::::3::: probability G 11127::2 matrix T ::2::::: bits 2.1 * 1.9 ** 1.7 * ** 1.5 ** * ** Relative 1.3 ** * ** Entropy 1.1 **** *** (11.5 bits) 0.9 **** *** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAAGAAA consensus C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAGAAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:151233436-151233516 67 1.21e-05 aagaaagaga aaaagaaa gaaaga chr16:67515517-67515597 43 1.21e-05 agctaaacca aaaagaaa aaccccatct chr17:38514707-38514787 47 1.21e-05 aagaaaagaa aaaagaaa gaagaaagaa chr20:45310031-45310111 30 1.21e-05 agaaggggag aaaagaaa gggaggaaga chr1:235669389-235669469 39 1.21e-05 aaaaaaaaTA AAAAGAAA AGGCAAGAAA chr16:2190662-2190742 67 1.21e-05 aaaagaaaag aaaagaaa aaaaag chr1:145408080-145408160 12 1.21e-05 gtctcaaaaa aaaagaaa gaaagaaaga chr4:76498883-76498963 47 1.21e-05 TGCATGGACA AAAAGAAA CAGATAATAC chr22:19200100-19200180 56 1.21e-05 agagaaagaa aaaagaaa gaaagaaaga chr7:100090555-100090635 49 1.21e-05 agcaagaaag aaaagaaa gcaagaaaga chr1:224032886-224032966 34 2.37e-05 AATTCAATTA AAAACAAA GCAAAGGTAC chr4:109088537-109088617 48 2.37e-05 CACACACCCC AAAACAAA CGAGGGATCT chr7:151202212-151202292 39 2.37e-05 caaaataaac aaaacaaa aaaaaaaacg chr2:178106532-178106612 48 2.37e-05 aacaaaagca aaaacaaa acaaaaaCAA chr6:27198903-27198983 58 4.91e-05 ACAAAAAAAT AATAGAAA CGTAGAAAAA chr2:178589480-178589560 23 4.91e-05 GTGCTAGAAG AAAAGAAG CACTTTCAAG chr1:22349699-22349779 13 4.91e-05 agagatcagc aaaagaag tgaagatgag chr8:105633441-105633521 25 4.91e-05 tatgtcaaga aaaagaag tacctttcta chr4:78739633-78739713 61 4.91e-05 GGGAAGGATG AAAAGAAG GGAACACGAC chr6:2449144-2449224 41 6.29e-05 ACTGGTCGCT AAAGGAAA GTGTGCTTTT chr11:58939244-58939324 62 7.35e-05 GCATTAAGGA AAAAAAAA GAGAGAGAGA chr6:28805523-28805603 55 7.35e-05 CAAGGACCAG AAAAAAAA TAAAGGAAAT chr15:89600935-89601015 70 7.35e-05 AAGGAATGAA AAAAAAAA AAG chr1:93257298-93257378 12 7.35e-05 TCCACCAAAA AAAAAAAA AGGATGAGGT chr22:20847906-20847986 2 9.78e-05 a aatacaaa aaaattagcc chr7:150701240-150701320 26 9.78e-05 ctctactaaa aatacaaa aattagctgg chr7:135194115-135194195 22 9.78e-05 GTGGAGCAAA AAAACAAG CAGCAGGACG chr19:18303272-18303352 28 9.78e-05 ctagaccaaa aatacaaa attagttggg chr22:20772212-20772292 7 9.78e-05 actaaa aatacaaa aattagtcgg chr7:73493944-73494024 72 9.78e-05 ctctactaaa aatacaaa a chr7:100778485-100778565 63 1.12e-04 gagagagaaa gaaagaaa gaaagaaaga chr2:183905484-183905564 59 1.12e-04 ggggagaaag gaaagaaa gaaggaaggg chr1:109242125-109242205 31 1.25e-04 gagagcgatc aagagaaa ggtccaagga chr20:47237451-47237531 65 1.25e-04 GAGAGAAAAA AAGAGAAA ATATTCAC chr22:20979322-20979402 4 1.39e-04 aac aaagcaaa aCAACAACAA chr7:100157468-100157548 4 1.39e-04 TGA AAAGCAAA CAGGAGTGCA chr10:52338941-52339021 16 1.52e-04 tgaaaaattg aatagaag ggttagaagg chr9:127274335-127274415 8 1.66e-04 gagagcg agaagaaa tgaggaagag chr17:43227030-43227110 48 1.66e-04 ACCTGGGAAG AGAAGAAA AAGTTCGACG chr10:70310568-70310648 3 2.21e-04 TG AATGGAAA ATAGAGCAGG chr5:39016498-39016578 21 2.21e-04 tgaaggggcg aaaggaag aagtagagaa chr7:152373632-152373712 1 2.67e-04 . AAAAGAAT TTTTAAAATA chr6:132600809-132600889 52 3.22e-04 AATTCACTCC GAAAGAAG CAAACATTCT chr16:2272938-2273018 64 3.22e-04 cagcctgggc gatagaaa gagactccg chr6:20404537-20404617 14 3.22e-04 GTTGGTACTA GAAAGAAG TGTGGCCCGG chr2:54785691-54785771 3 3.65e-04 GG AAAGCAAG AAATTAGATG chr22:22312798-22312878 18 3.94e-04 GTTGGCACTG AAAAGAGA CTGCAGCTAC chr6:41748007-41748087 60 4.22e-04 GAGAGAACTG AAGGGAAA CACGCGGAGG chr3:141071353-141071433 23 4.22e-04 GCATTTCATA AAGGGAAA GCCAGCTAGG chr5:118747708-118747788 13 4.63e-04 CAGCAGCGGG AGAAGAAG CTGCTCCGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAGAAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:151233436-151233516 1.2e-05 66_[+3]_6 chr16:67515517-67515597 1.2e-05 42_[+3]_30 chr17:38514707-38514787 1.2e-05 46_[+3]_26 chr20:45310031-45310111 1.2e-05 29_[+3]_43 chr1:235669389-235669469 1.2e-05 38_[+3]_34 chr16:2190662-2190742 1.2e-05 66_[+3]_6 chr1:145408080-145408160 1.2e-05 11_[+3]_61 chr4:76498883-76498963 1.2e-05 46_[+3]_26 chr22:19200100-19200180 1.2e-05 55_[+3]_17 chr7:100090555-100090635 1.2e-05 48_[+3]_24 chr1:224032886-224032966 2.4e-05 33_[+3]_39 chr4:109088537-109088617 2.4e-05 47_[+3]_25 chr7:151202212-151202292 2.4e-05 38_[+3]_34 chr2:178106532-178106612 2.4e-05 47_[+3]_25 chr6:27198903-27198983 4.9e-05 57_[+3]_15 chr2:178589480-178589560 4.9e-05 22_[+3]_50 chr1:22349699-22349779 4.9e-05 12_[+3]_60 chr8:105633441-105633521 4.9e-05 24_[+3]_48 chr4:78739633-78739713 4.9e-05 60_[+3]_12 chr6:2449144-2449224 6.3e-05 40_[+3]_32 chr11:58939244-58939324 7.4e-05 61_[+3]_11 chr6:28805523-28805603 7.4e-05 54_[+3]_18 chr15:89600935-89601015 7.4e-05 69_[+3]_3 chr1:93257298-93257378 7.4e-05 11_[+3]_61 chr22:20847906-20847986 9.8e-05 1_[+3]_71 chr7:150701240-150701320 9.8e-05 25_[+3]_47 chr7:135194115-135194195 9.8e-05 21_[+3]_51 chr19:18303272-18303352 9.8e-05 27_[+3]_45 chr22:20772212-20772292 9.8e-05 6_[+3]_66 chr7:73493944-73494024 9.8e-05 71_[+3]_1 chr7:100778485-100778565 0.00011 62_[+3]_10 chr2:183905484-183905564 0.00011 58_[+3]_14 chr1:109242125-109242205 0.00013 30_[+3]_42 chr20:47237451-47237531 0.00013 64_[+3]_8 chr22:20979322-20979402 0.00014 3_[+3]_69 chr7:100157468-100157548 0.00014 3_[+3]_69 chr10:52338941-52339021 0.00015 15_[+3]_57 chr9:127274335-127274415 0.00017 7_[+3]_65 chr17:43227030-43227110 0.00017 47_[+3]_25 chr10:70310568-70310648 0.00022 2_[+3]_70 chr5:39016498-39016578 0.00022 20_[+3]_52 chr7:152373632-152373712 0.00027 [+3]_72 chr6:132600809-132600889 0.00032 51_[+3]_21 chr16:2272938-2273018 0.00032 63_[+3]_9 chr6:20404537-20404617 0.00032 13_[+3]_59 chr2:54785691-54785771 0.00036 2_[+3]_70 chr22:22312798-22312878 0.00039 17_[+3]_55 chr6:41748007-41748087 0.00042 59_[+3]_13 chr3:141071353-141071433 0.00042 22_[+3]_50 chr5:118747708-118747788 0.00046 12_[+3]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAGAAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAGAAA width=8 seqs=50 chr7:151233436-151233516 ( 67) AAAAGAAA 1 chr16:67515517-67515597 ( 43) AAAAGAAA 1 chr17:38514707-38514787 ( 47) AAAAGAAA 1 chr20:45310031-45310111 ( 30) AAAAGAAA 1 chr1:235669389-235669469 ( 39) AAAAGAAA 1 chr16:2190662-2190742 ( 67) AAAAGAAA 1 chr1:145408080-145408160 ( 12) AAAAGAAA 1 chr4:76498883-76498963 ( 47) AAAAGAAA 1 chr22:19200100-19200180 ( 56) AAAAGAAA 1 chr7:100090555-100090635 ( 49) AAAAGAAA 1 chr1:224032886-224032966 ( 34) AAAACAAA 1 chr4:109088537-109088617 ( 48) AAAACAAA 1 chr7:151202212-151202292 ( 39) AAAACAAA 1 chr2:178106532-178106612 ( 48) AAAACAAA 1 chr6:27198903-27198983 ( 58) AATAGAAA 1 chr2:178589480-178589560 ( 23) AAAAGAAG 1 chr1:22349699-22349779 ( 13) AAAAGAAG 1 chr8:105633441-105633521 ( 25) AAAAGAAG 1 chr4:78739633-78739713 ( 61) AAAAGAAG 1 chr6:2449144-2449224 ( 41) AAAGGAAA 1 chr11:58939244-58939324 ( 62) AAAAAAAA 1 chr6:28805523-28805603 ( 55) AAAAAAAA 1 chr15:89600935-89601015 ( 70) AAAAAAAA 1 chr1:93257298-93257378 ( 12) AAAAAAAA 1 chr22:20847906-20847986 ( 2) AATACAAA 1 chr7:150701240-150701320 ( 26) AATACAAA 1 chr7:135194115-135194195 ( 22) AAAACAAG 1 chr19:18303272-18303352 ( 28) AATACAAA 1 chr22:20772212-20772292 ( 7) AATACAAA 1 chr7:73493944-73494024 ( 72) AATACAAA 1 chr7:100778485-100778565 ( 63) GAAAGAAA 1 chr2:183905484-183905564 ( 59) GAAAGAAA 1 chr1:109242125-109242205 ( 31) AAGAGAAA 1 chr20:47237451-47237531 ( 65) AAGAGAAA 1 chr22:20979322-20979402 ( 4) AAAGCAAA 1 chr7:100157468-100157548 ( 4) AAAGCAAA 1 chr10:52338941-52339021 ( 16) AATAGAAG 1 chr9:127274335-127274415 ( 8) AGAAGAAA 1 chr17:43227030-43227110 ( 48) AGAAGAAA 1 chr10:70310568-70310648 ( 3) AATGGAAA 1 chr5:39016498-39016578 ( 21) AAAGGAAG 1 chr7:152373632-152373712 ( 1) AAAAGAAT 1 chr6:132600809-132600889 ( 52) GAAAGAAG 1 chr16:2272938-2273018 ( 64) GATAGAAA 1 chr6:20404537-20404617 ( 14) GAAAGAAG 1 chr2:54785691-54785771 ( 3) AAAGCAAG 1 chr22:22312798-22312878 ( 18) AAAAGAGA 1 chr6:41748007-41748087 ( 60) AAGGGAAA 1 chr3:141071353-141071433 ( 23) AAGGGAAA 1 chr5:118747708-118747788 ( 13) AGAAGAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAGAAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.64284 E= 1.2e-009 191 -1229 -144 -1229 198 -1229 -218 -1229 163 -1229 -177 -35 181 -1229 -77 -1229 -158 0 128 -1229 207 -1229 -1229 -1229 204 -1229 -376 -1229 167 -1229 -31 -351 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAGAAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 50 E= 1.2e-009 0.900000 0.000000 0.100000 0.000000 0.940000 0.000000 0.060000 0.000000 0.740000 0.000000 0.080000 0.180000 0.840000 0.000000 0.160000 0.000000 0.080000 0.260000 0.660000 0.000000 1.000000 0.000000 0.000000 0.000000 0.980000 0.000000 0.020000 0.000000 0.760000 0.000000 0.220000 0.020000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAGAAA MEME-3 regular expression -------------------------------------------------------------------------------- AAAA[GC]AA[AG] -------------------------------------------------------------------------------- Time 12.72 secs. ******************************************************************************** ******************************************************************************** MOTIF CTTTCTTT MEME-4 width = 8 sites = 20 llr = 182 E-value = 3.3e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTTTCTTT MEME-4 Description -------------------------------------------------------------------------------- Simplified A :2:::::: pos.-specific C 811:9:2: probability G :::::::: matrix T 389a2a8a bits 2.1 * * * 1.9 * * * 1.7 ** * * 1.5 ** * * Relative 1.3 ******** Entropy 1.1 ******** (13.2 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTTTCTTT consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTTCTTT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr18:2823300-2823380 18 9.75e-06 tccctccctt ctttcttt cctttctttt chr4:56484836-56484916 33 9.75e-06 tctctctctt ctttcttt ttctttcttc chr1:51699946-51700026 42 9.75e-06 tcttttcttt ctttcttt cttttctttc chr7:25895996-25896076 48 9.75e-06 cttattctac ctttcttt gctttctctc chr7:98062873-98062953 55 9.75e-06 ttctttcttt ctttcttt ctttctttct chr7:106634243-106634323 30 9.75e-06 ttttctctct ctttcttt cttgagacag chr5:33935066-33935146 59 1.83e-05 ctttcttttc ttttcttt ctttctttct chr1:17278347-17278427 39 1.83e-05 tctttttttt ttttcttt tttctttttt chr1:32181727-32181807 50 1.83e-05 tctttttttc ttttcttt tttttttgag chr7:1619531-1619611 55 2.94e-05 ctgtctgggt ctttctct tctctttctc chr7:93633225-93633305 58 2.94e-05 TAGTCCACTA CTTTCTCT AGCCTACCAT chr19:12891106-12891186 61 3.80e-05 CTGTGTCAtt cttttttt ctttttcttt chr18:3703770-3703850 24 4.82e-05 GGTTGACATG CATTCTTT CCCCTATGAA chr2:70484564-70484644 52 4.82e-05 TAGCTGTGCG CATTCTTT GAGAGGAGCG chr7:128347984-128348064 50 5.92e-05 atttctctct ctctcttt ctccttcctt chr17:46018412-46018492 66 6.90e-05 CAGATTACCC TTTTCTCT ATGTGTC chr7:120622315-120622395 15 6.90e-05 tttgcaaata ttttctct cacttccagg chr5:10317215-10317295 15 9.66e-05 ttccttcctt ccttcttt ccttccttcc chr22:22408452-22408532 73 1.37e-04 tctcctttat catttttt chr1:245025965-245026045 28 1.69e-04 TTTAACACCC CTCTTTTT ATCTCCGCCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTTCTTT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr18:2823300-2823380 9.7e-06 17_[+4]_55 chr4:56484836-56484916 9.7e-06 32_[+4]_40 chr1:51699946-51700026 9.7e-06 41_[+4]_31 chr7:25895996-25896076 9.7e-06 47_[+4]_25 chr7:98062873-98062953 9.7e-06 54_[+4]_18 chr7:106634243-106634323 9.7e-06 29_[+4]_43 chr5:33935066-33935146 1.8e-05 58_[+4]_14 chr1:17278347-17278427 1.8e-05 38_[+4]_34 chr1:32181727-32181807 1.8e-05 49_[+4]_23 chr7:1619531-1619611 2.9e-05 54_[+4]_18 chr7:93633225-93633305 2.9e-05 57_[+4]_15 chr19:12891106-12891186 3.8e-05 60_[+4]_12 chr18:3703770-3703850 4.8e-05 23_[+4]_49 chr2:70484564-70484644 4.8e-05 51_[+4]_21 chr7:128347984-128348064 5.9e-05 49_[+4]_23 chr17:46018412-46018492 6.9e-05 65_[+4]_7 chr7:120622315-120622395 6.9e-05 14_[+4]_58 chr5:10317215-10317295 9.7e-05 14_[+4]_58 chr22:22408452-22408532 0.00014 72_[+4] chr1:245025965-245026045 0.00017 27_[+4]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTTCTTT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTTTCTTT width=8 seqs=20 chr18:2823300-2823380 ( 18) CTTTCTTT 1 chr4:56484836-56484916 ( 33) CTTTCTTT 1 chr1:51699946-51700026 ( 42) CTTTCTTT 1 chr7:25895996-25896076 ( 48) CTTTCTTT 1 chr7:98062873-98062953 ( 55) CTTTCTTT 1 chr7:106634243-106634323 ( 30) CTTTCTTT 1 chr5:33935066-33935146 ( 59) TTTTCTTT 1 chr1:17278347-17278427 ( 39) TTTTCTTT 1 chr1:32181727-32181807 ( 50) TTTTCTTT 1 chr7:1619531-1619611 ( 55) CTTTCTCT 1 chr7:93633225-93633305 ( 58) CTTTCTCT 1 chr19:12891106-12891186 ( 61) CTTTTTTT 1 chr18:3703770-3703850 ( 24) CATTCTTT 1 chr2:70484564-70484644 ( 52) CATTCTTT 1 chr7:128347984-128348064 ( 50) CTCTCTTT 1 chr17:46018412-46018492 ( 66) TTTTCTCT 1 chr7:120622315-120622395 ( 15) TTTTCTCT 1 chr5:10317215-10317295 ( 15) CCTTCTTT 1 chr22:22408452-22408532 ( 73) CATTTTTT 1 chr1:245025965-245026045 ( 28) CTCTTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTTCTTT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.6697 E= 3.3e+001 -1097 153 -1097 13 -67 -238 -1097 181 -1097 -138 -1097 198 -1097 -1097 -1097 213 -1097 171 -1097 -61 -1097 -1097 -1097 213 -1097 -38 -1097 181 -1097 -1097 -1097 213 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTTCTTT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 3.3e+001 0.000000 0.750000 0.000000 0.250000 0.150000 0.050000 0.000000 0.800000 0.000000 0.100000 0.000000 0.900000 0.000000 0.000000 0.000000 1.000000 0.000000 0.850000 0.000000 0.150000 0.000000 0.000000 0.000000 1.000000 0.000000 0.200000 0.000000 0.800000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTTCTTT MEME-4 regular expression -------------------------------------------------------------------------------- [CT]TTTCT[TC]T -------------------------------------------------------------------------------- Time 16.35 secs. ******************************************************************************** ******************************************************************************** MOTIF CACTTTGG MEME-5 width = 8 sites = 15 llr = 148 E-value = 4.0e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACTTTGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :9:::::: pos.-specific C a191:::: probability G ::1::1aa matrix T :::9a9:: bits 2.1 * 1.9 * * ** 1.7 * ***** 1.5 ** ***** Relative 1.3 ******** Entropy 1.1 ******** (14.2 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACTTTGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTTTGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:47830813-47830893 29 1.44e-05 gtagtcccag cactttgg gaggccgagg chr2:70351851-70351931 4 1.44e-05 cag cactttgg gaggccgagg chr19:12891106-12891186 35 1.44e-05 TATGGGACCT CACTTTGG GTCTATATCT chr6:107349046-107349126 41 1.44e-05 gtaatcccag cactttgg gaggccgagg chr11:114132027-11413210 29 1.44e-05 gtaatcccag cactttgg gaggccgagg chr22:21313289-21313369 5 1.44e-05 ccag cactttgg gaggccgagg chr6:27181318-27181398 31 1.44e-05 gtaatccaag cactttgg gaggccgagg chr1:22349699-22349779 64 1.44e-05 gtaatcccag cactttgg gaagccgag chr7:32928925-32929005 42 1.44e-05 gtaatcccag cactttgg aaggccgagg chr1:174129312-174129392 6 4.50e-05 TTTTG CAGTTTGG GATGGGATGC chr17:65989304-65989384 62 4.50e-05 TTCCGAAAAA CAGTTTGG AGAAGAGCAT chr2:70484564-70484644 16 4.50e-05 GTACTGTTGT CCCTTTGG TCTGTTTCTG chr17:74438843-74438923 22 4.50e-05 GGGAGGTCAG CCCTTTGG AGGTCAGTTG chr18:8988420-8988500 37 6.13e-05 GCCACCTAGC CACCTTGG GGAGAAATGC chr17:40976534-40976614 4 7.83e-05 cag cacttggg gaggccgagg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTTTGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:47830813-47830893 1.4e-05 28_[+5]_44 chr2:70351851-70351931 1.4e-05 3_[+5]_69 chr19:12891106-12891186 1.4e-05 34_[+5]_38 chr6:107349046-107349126 1.4e-05 40_[+5]_32 chr11:114132027-11413210 1.4e-05 28_[+5]_44 chr22:21313289-21313369 1.4e-05 4_[+5]_68 chr6:27181318-27181398 1.4e-05 30_[+5]_42 chr1:22349699-22349779 1.4e-05 63_[+5]_9 chr7:32928925-32929005 1.4e-05 41_[+5]_31 chr1:174129312-174129392 4.5e-05 5_[+5]_67 chr17:65989304-65989384 4.5e-05 61_[+5]_11 chr2:70484564-70484644 4.5e-05 15_[+5]_57 chr17:74438843-74438923 4.5e-05 21_[+5]_51 chr18:8988420-8988500 6.1e-05 36_[+5]_36 chr17:40976534-40976614 7.8e-05 3_[+5]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTTTGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACTTTGG width=8 seqs=15 chr3:47830813-47830893 ( 29) CACTTTGG 1 chr2:70351851-70351931 ( 4) CACTTTGG 1 chr19:12891106-12891186 ( 35) CACTTTGG 1 chr6:107349046-107349126 ( 41) CACTTTGG 1 chr11:114132027-11413210 ( 29) CACTTTGG 1 chr22:21313289-21313369 ( 5) CACTTTGG 1 chr6:27181318-27181398 ( 31) CACTTTGG 1 chr1:22349699-22349779 ( 64) CACTTTGG 1 chr7:32928925-32929005 ( 42) CACTTTGG 1 chr1:174129312-174129392 ( 6) CAGTTTGG 1 chr17:65989304-65989384 ( 62) CAGTTTGG 1 chr2:70484564-70484644 ( 16) CCCTTTGG 1 chr17:74438843-74438923 ( 22) CCCTTTGG 1 chr18:8988420-8988500 ( 37) CACCTTGG 1 chr17:40976534-40976614 ( 4) CACTTGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTTTGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1725 E= 4.0e+000 -1055 194 -1055 -1055 186 -96 -1055 -1055 -1055 173 -103 -1055 -1055 -196 -1055 203 -1055 -1055 -1055 213 -1055 -1055 -203 203 -1055 -1055 188 -1055 -1055 -1055 188 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTTTGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 4.0e+000 0.000000 1.000000 0.000000 0.000000 0.866667 0.133333 0.000000 0.000000 0.000000 0.866667 0.133333 0.000000 0.000000 0.066667 0.000000 0.933333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.066667 0.933333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTTTGG MEME-5 regular expression -------------------------------------------------------------------------------- CACTTTGG -------------------------------------------------------------------------------- Time 19.86 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:230907637-230907717 9.23e-01 80 chr7:100090555-100090635 1.70e-01 48_[+3(1.21e-05)]_24 chr2:54785691-54785771 1.39e-01 80 chr14:102512772-10251285 6.91e-01 80 chr12:108908409-10890848 1.14e-01 63_[+2(6.06e-05)]_9 chr1:93257298-93257378 1.35e-01 7_[+3(7.35e-05)]_65 chr11:61472412-61472492 9.98e-01 80 chr6:33290162-33290242 1.70e-01 80 chr4:159969322-159969402 2.48e-01 80 chr17:65289975-65290055 5.26e-01 80 chrX:153402200-153402280 7.12e-01 80 chr4:78739633-78739713 2.93e-02 60_[+3(4.91e-05)]_12 chr1:200590515-200590595 3.11e-01 80 chr8:99058149-99058229 1.38e-01 80 chr3:186545579-186545659 2.38e-01 80 chr8:144853250-144853330 6.26e-02 23_[+2(6.06e-05)]_49 chr1:89990789-89990869 5.73e-01 80 chr1:118149618-118149698 5.53e-01 80 chr17:21454550-21454630 8.95e-01 80 chr9:99983984-99984064 2.33e-01 80 chr21:45395552-45395632 6.18e-04 52_[+1(2.40e-05)]_20 chr16:3200349-3200429 6.35e-01 80 chr1:44514401-44514481 5.74e-01 80 chr1:32181727-32181807 2.17e-04 37_[+1(8.59e-06)]_[+1(8.59e-06)]_1_\ [+1(2.40e-05)]_18 chr7:73493944-73494024 3.67e-03 71_[+3(9.78e-05)]_1 chr15:20561897-20561977 2.26e-01 80 chr6:42016971-42017051 7.35e-01 80 chr22:20772212-20772292 1.97e-01 6_[+3(9.78e-05)]_66 chr15:85177097-85177177 9.79e-01 80 chr2:188364833-188364913 5.85e-01 80 chr12:116714648-11671472 9.00e-01 80 chr7:93633225-93633305 1.78e-02 57_[+4(2.94e-05)]_15 chr17:74438843-74438923 1.13e-01 6_[+5(7.83e-05)]_7_[+5(4.50e-05)]_\ 51 chr8:105633441-105633521 5.90e-03 24_[+3(4.91e-05)]_48 chr6:142858982-142859062 3.16e-01 80 chr7:32928925-32929005 9.67e-02 41_[+5(1.44e-05)]_31 chr11:74460693-74460773 3.37e-01 80 chr9:95571410-95571490 9.95e-01 80 chr2:183905484-183905564 3.76e-01 54_[+3(6.29e-05)]_18 chr1:46872135-46872215 6.72e-01 80 chr15:75063571-75063651 5.90e-01 80 chr1:46806030-46806110 1.91e-02 46_[+2(6.06e-05)]_26 chr11:75099940-75100020 5.08e-01 80 chr1:23695928-23696008 4.55e-01 80 chr2:70484564-70484644 2.11e-03 15_[+5(4.50e-05)]_28_[+4(4.82e-05)]_\ 21 chrX:110925069-110925149 2.32e-01 80 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******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n07.farnam.hpc.yale.internal ********************************************************************************