******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/NR2F6.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr21:36842860-36842940 1.0000 80 chr2:99029513-99029593 1.0000 80 chr6:6665828-6665908 1.0000 80 chr1:23428163-23428243 1.0000 80 chr9:116036879-116036959 1.0000 80 chr9:75763487-75763567 1.0000 80 chr10:50707523-50707603 1.0000 80 chr16:75729739-75729819 1.0000 80 chr1:211869039-211869119 1.0000 80 chr1:95273790-95273870 1.0000 80 chr12:122791118-12279119 1.0000 80 chr7:106456252-106456332 1.0000 80 chr8:125488626-125488706 1.0000 80 chr10:97832593-97832673 1.0000 80 chr1:48221235-48221315 1.0000 80 chr3:127314357-127314437 1.0000 80 chr18:30812130-30812210 1.0000 80 chr18:10081626-10081706 1.0000 80 chr1:183914699-183914779 1.0000 80 chr5:132759650-132759730 1.0000 80 chr7:112348476-112348556 1.0000 80 chr1:69945625-69945705 1.0000 80 chr1:176660968-176661048 1.0000 80 chr3:49195701-49195781 1.0000 80 chr12:65587067-65587147 1.0000 80 chr7:99137109-99137189 1.0000 80 chr9:124861713-124861793 1.0000 80 chr21:47438688-47438768 1.0000 80 chr19:10197307-10197387 1.0000 80 chr17:3623426-3623506 1.0000 80 chr14:52351175-52351255 1.0000 80 chr7:116250325-116250405 1.0000 80 chr6:126109099-126109179 1.0000 80 chr10:32478492-32478572 1.0000 80 chr11:62687540-62687620 1.0000 80 chr19:49713412-49713492 1.0000 80 chr20:35513933-35514013 1.0000 80 chr20:36825074-36825154 1.0000 80 chr16:80022113-80022193 1.0000 80 chr8:123772616-123772696 1.0000 80 chr2:29229733-29229813 1.0000 80 chr11:66601900-66601980 1.0000 80 chr17:26075266-26075346 1.0000 80 chr11:76316944-76317024 1.0000 80 chr12:33136454-33136534 1.0000 80 chr12:74946107-74946187 1.0000 80 chr3:193316097-193316177 1.0000 80 chr6:105483299-105483379 1.0000 80 chr6:20454553-20454633 1.0000 80 chr5:93430937-93431017 1.0000 80 chr2:187749450-187749530 1.0000 80 chr16:86962285-86962365 1.0000 80 chr4:81384816-81384896 1.0000 80 chr16:53058041-53058121 1.0000 80 chr11:47961665-47961745 1.0000 80 chr1:61557395-61557475 1.0000 80 chr6:7115539-7115619 1.0000 80 chr4:140524946-140525026 1.0000 80 chr2:158795268-158795348 1.0000 80 chr5:149730204-149730284 1.0000 80 chr1:231330889-231330969 1.0000 80 chr21:17114515-17114595 1.0000 80 chr2:72317537-72317617 1.0000 80 chr4:139359831-139359911 1.0000 80 chr1:182328917-182328997 1.0000 80 chr11:129973412-12997349 1.0000 80 chr19:51294416-51294496 1.0000 80 chr10:82026403-82026483 1.0000 80 chr17:8080537-8080617 1.0000 80 chr1:27933989-27934069 1.0000 80 chr5:149501833-149501913 1.0000 80 chr2:169963495-169963575 1.0000 80 chr2:102667375-102667455 1.0000 80 chr1:110632366-110632446 1.0000 80 chr8:42000318-42000398 1.0000 80 chr21:40376102-40376182 1.0000 80 chr1:110946538-110946618 1.0000 80 chr4:153503104-153503184 1.0000 80 chr7:121034988-121035068 1.0000 80 chr19:11513001-11513081 1.0000 80 chr19:46914871-46914951 1.0000 80 chr6:149450738-149450818 1.0000 80 chr2:38861913-38861993 1.0000 80 chr1:18458715-18458795 1.0000 80 chr15:27480493-27480573 1.0000 80 chr17:71285146-71285226 1.0000 80 chr4:153449358-153449438 1.0000 80 chr4:144162250-144162330 1.0000 80 chr12:56596294-56596374 1.0000 80 chr18:43246625-43246705 1.0000 80 chr7:137628119-137628199 1.0000 80 chr9:76026570-76026650 1.0000 80 chr11:15601721-15601801 1.0000 80 chr2:201232024-201232104 1.0000 80 chr19:1068230-1068310 1.0000 80 chr10:79609027-79609107 1.0000 80 chr5:78054100-78054180 1.0000 80 chr17:28067078-28067158 1.0000 80 chr3:196347204-196347284 1.0000 80 chr8:20484950-20485030 1.0000 80 chr17:16391900-16391980 1.0000 80 chr2:9843957-9844037 1.0000 80 chr21:46507034-46507114 1.0000 80 chr2:175901423-175901503 1.0000 80 chr18:53331248-53331328 1.0000 80 chr6:15970901-15970981 1.0000 80 chr22:43659319-43659399 1.0000 80 chr15:60878102-60878182 1.0000 80 chr7:103815431-103815511 1.0000 80 chr19:49136797-49136877 1.0000 80 chr13:60275591-60275671 1.0000 80 chr6:143419342-143419422 1.0000 80 chr7:133568902-133568982 1.0000 80 chr6:26219225-26219305 1.0000 80 chr7:129485569-129485649 1.0000 80 chr10:72453527-72453607 1.0000 80 chr7:73144971-73145051 1.0000 80 chr4:185736699-185736779 1.0000 80 chr3:14294420-14294500 1.0000 80 chr10:9865393-9865473 1.0000 80 chr16:75163825-75163905 1.0000 80 chr7:12952814-12952894 1.0000 80 chr21:39665896-39665976 1.0000 80 chr17:54987726-54987806 1.0000 80 chr20:35502110-35502190 1.0000 80 chr5:172305050-172305130 1.0000 80 chr15:77359805-77359885 1.0000 80 chr19:50865037-50865117 1.0000 80 chr1:183905308-183905388 1.0000 80 chr20:44399895-44399975 1.0000 80 chr13:91789205-91789285 1.0000 80 chr1:246859883-246859963 1.0000 80 chr1:27675512-27675592 1.0000 80 chr19:59069500-59069580 1.0000 80 chr9:37362575-37362655 1.0000 80 chr1:8499678-8499758 1.0000 80 chr3:186928869-186928949 1.0000 80 chr4:48807101-48807181 1.0000 80 chr1:144530334-144530414 1.0000 80 chr6:112365089-112365169 1.0000 80 chr15:65217682-65217762 1.0000 80 chr19:19745175-19745255 1.0000 80 chr20:42087859-42087939 1.0000 80 chr1:185210429-185210509 1.0000 80 chrX:47583228-47583308 1.0000 80 chr16:69499323-69499403 1.0000 80 chr19:50919365-50919445 1.0000 80 chr6:37368016-37368096 1.0000 80 chr1:159046726-159046806 1.0000 80 chr2:72025592-72025672 1.0000 80 chr10:121484544-12148462 1.0000 80 chr1:201636791-201636871 1.0000 80 chr4:2846238-2846318 1.0000 80 chr8:19179724-19179804 1.0000 80 chr17:7370343-7370423 1.0000 80 chr12:54688107-54688187 1.0000 80 chr4:48625575-48625655 1.0000 80 chr10:32241065-32241145 1.0000 80 chr15:58574655-58574735 1.0000 80 chr17:47819830-47819910 1.0000 80 chr5:150505884-150505964 1.0000 80 chr16:79985439-79985519 1.0000 80 chr3:114546482-114546562 1.0000 80 chr11:94877680-94877760 1.0000 80 chr9:139082270-139082350 1.0000 80 chr4:124365642-124365722 1.0000 80 chr17:14276544-14276624 1.0000 80 chr5:138485668-138485748 1.0000 80 chr19:19009548-19009628 1.0000 80 chr6:51778233-51778313 1.0000 80 chr6:143195951-143196031 1.0000 80 chr9:95871622-95871702 1.0000 80 chr19:46377191-46377271 1.0000 80 chr17:57635567-57635647 1.0000 80 chrX:118611840-118611920 1.0000 80 chr8:61523704-61523784 1.0000 80 chr9:130843460-130843540 1.0000 80 chr1:180940012-180940092 1.0000 80 chr11:134198457-13419853 1.0000 80 chr15:29360322-29360402 1.0000 80 chr8:11799850-11799930 1.0000 80 chr7:129425030-129425110 1.0000 80 chr6:7106558-7106638 1.0000 80 chr10:33260664-33260744 1.0000 80 chr8:27180400-27180480 1.0000 80 chr5:147777961-147778041 1.0000 80 chr6:36650164-36650244 1.0000 80 chr18:12767162-12767242 1.0000 80 chr4:154331171-154331251 1.0000 80 chr17:37027845-37027925 1.0000 80 chr19:10416112-10416192 1.0000 80 chr4:53886098-53886178 1.0000 80 chr11:62235372-62235452 1.0000 80 chr11:12889249-12889329 1.0000 80 chr1:154469520-154469600 1.0000 80 chr18:55578181-55578261 1.0000 80 chr1:45142324-45142404 1.0000 80 chr15:70725631-70725711 1.0000 80 chr13:28982412-28982492 1.0000 80 chr1:28481501-28481581 1.0000 80 chr12:27159906-27159986 1.0000 80 chr4:38385334-38385414 1.0000 80 chr12:117141171-11714125 1.0000 80 chr3:45108073-45108153 1.0000 80 chr6:26475506-26475586 1.0000 80 chr9:111895168-111895248 1.0000 80 chr6:105402526-105402606 1.0000 80 chr3:118960464-118960544 1.0000 80 chr3:43799299-43799379 1.0000 80 chr3:57969699-57969779 1.0000 80 chr19:41828002-41828082 1.0000 80 chr7:107204962-107205042 1.0000 80 chr12:31910158-31910238 1.0000 80 chr1:221163925-221164005 1.0000 80 chr11:64027148-64027228 1.0000 80 chr12:124205873-12420595 1.0000 80 chr9:33165821-33165901 1.0000 80 chr17:75385617-75385697 1.0000 80 chr7:135734023-135734103 1.0000 80 chr6:135439427-135439507 1.0000 80 chr6:32208665-32208745 1.0000 80 chr8:38135796-38135876 1.0000 80 chr1:92783539-92783619 1.0000 80 chr6:14728264-14728344 1.0000 80 chr11:129830246-12983032 1.0000 80 chr8:100649743-100649823 1.0000 80 chr22:24921513-24921593 1.0000 80 chr6:126269752-126269832 1.0000 80 chr1:228974330-228974410 1.0000 80 chr11:120959272-12095935 1.0000 80 chr16:11243029-11243109 1.0000 80 chr2:64246990-64247070 1.0000 80 chr6:84302634-84302714 1.0000 80 chr1:32338553-32338633 1.0000 80 chr14:105485792-10548587 1.0000 80 chr5:156786080-156786160 1.0000 80 chr3:36996385-36996465 1.0000 80 chr16:56389998-56390078 1.0000 80 chr9:90171869-90171949 1.0000 80 chr9:35731545-35731625 1.0000 80 chr7:91481881-91481961 1.0000 80 chr10:32791008-32791088 1.0000 80 chrX:129088951-129089031 1.0000 80 chr7:72987352-72987432 1.0000 80 chr5:55213966-55214046 1.0000 80 chr16:70669394-70669474 1.0000 80 chr9:38195875-38195955 1.0000 80 chr16:30198575-30198655 1.0000 80 chr3:183706122-183706202 1.0000 80 chr1:2203546-2203626 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_NR2F6/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/NR2F6.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.25 C 0.253 G 0.241 T 0.256 Background letter frequencies (from file dataset with add-one prior applied): A 0.25 C 0.253 G 0.241 T 0.256 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF ARAGGTCA MEME-1 width = 8 sites = 148 llr = 1193 E-value = 1.5e-147 ******************************************************************************** -------------------------------------------------------------------------------- Motif ARAGGTCA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 768::::a pos.-specific C 1::::1a: probability G 142aa1:: matrix T 1::::9:: bits 2.1 ** * 1.8 ** ** 1.6 ** ** 1.4 ** ** Relative 1.2 ****** Entropy 1.0 ****** (11.6 bits) 0.8 ****** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAGGTCA consensus GG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAGGTCA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:2203546-2203626 7 1.47e-05 GGGTCA AAAGGTCA CTGCCCCGAT chr9:38195875-38195955 32 1.47e-05 gtcagaggtc aaaggtca gacagcccac chr7:91481881-91481961 32 1.47e-05 cctgctgtca aaaggtca tagcactagt chr2:64246990-64247070 26 1.47e-05 TCCAAAGGTT AAAGGTCA CCCCTCCGCA chr11:129830246-12983032 45 1.47e-05 tctgaaaggc aaaggtca tcgatgacag chr6:32208665-32208745 72 1.47e-05 gagaaggtca aaaggtca a chr17:75385617-75385697 63 1.47e-05 aggagacctg aaaggtca tctggtccct chr3:43799299-43799379 45 1.47e-05 ATCCTAGGTC AAAGGTCA GTTCTTACAA chr12:117141171-11714125 72 1.47e-05 CCGGGCAATG AAAGGTCA G chr4:53886098-53886178 54 1.47e-05 TTCCAAACAC AAAGGTCA ACGCTGGGCT chr18:12767162-12767242 19 1.47e-05 ggtcagatgt aaaggtca gctcagtgac chr6:7106558-7106638 57 1.47e-05 AGCCAGGGTC AAAGGTCA TAGTAAATAG chr7:129425030-129425110 38 1.47e-05 CAGATTATCC AAAGGTCA GTGACCCAGA chr1:180940012-180940092 40 1.47e-05 AGGAAGAGCA AAAGGTCA AGACACAATA chrX:118611840-118611920 15 1.47e-05 GAAAGAGACC AAAGGTCA AAGATAAATC chr3:114546482-114546562 11 1.47e-05 TTGGGAGATC AAAGGTCA TGTGAGGGGG chr10:121484544-12148462 13 1.47e-05 GGGTGTCATA AAAGGTCA TTAGTTCAAC chr19:19745175-19745255 43 1.47e-05 AACACAGGTC AAAGGTCA GAGGTCAGTG chr1:8499678-8499758 10 1.47e-05 AGGAGCAAG AAAGGTCA ATGACCCTTG chr1:183905308-183905388 47 1.47e-05 GTCAAATGTC AAAGGTCA AATGTCTTGG chr21:39665896-39665976 23 1.47e-05 GGCCAAGGCC AAAGGTCA TGGTGCATGT chr6:26219225-26219305 41 1.47e-05 ATCTGATATG AAAGGTCA TGGCCTGCAC chr19:49136797-49136877 51 1.47e-05 GGTCGGGTTC AAAGGTCA TCAACACCTC chr7:103815431-103815511 5 1.47e-05 agta aaaggtca atggggcact chr4:144162250-144162330 24 1.47e-05 ATCATGCTTC AAAGGTCA CAGGCCATAC chr21:40376102-40376182 51 1.47e-05 ATCCAGGGTT AAAGGTCA GGGTGACTGG chr2:102667375-102667455 31 1.47e-05 CACAGATGTC AAAGGTCA CTCATACATC chr5:149501833-149501913 22 1.47e-05 ACCCCAGGGC AAAGGTCA CAAGACGGGT chr1:27933989-27934069 36 1.47e-05 GCCAGAGGGC AAAGGTCA GCTTTGTTCC chr2:158795268-158795348 18 1.47e-05 CACAGAGGTG AAAGGTCA TCTAGATAGT chr4:140524946-140525026 44 1.47e-05 AAACTCCCTG AAAGGTCA TTCCTGTGGT chr16:53058041-53058121 3 1.47e-05 tc aaaggtca ttattcttgc chr11:76316944-76317024 52 1.47e-05 gtcaaaggtc aaaggtca agccaggcac chr20:35513933-35514013 8 1.47e-05 tcaggtc aaaggtca tgtccttcga chr17:3623426-3623506 29 1.47e-05 TGACTCACTC AAAGGTCA CAAAGGCAGC chr19:10197307-10197387 37 1.47e-05 CTGCAGGGTC AAAGGTCA GAGGCCAGAG chr3:49195701-49195781 50 1.47e-05 GACAAAGGGC AAAGGTCA GGGTCATGAA chr7:112348476-112348556 11 1.47e-05 TGTAGCACAC AAAGGTCA GAGGTCAATT chr7:106456252-106456332 53 1.47e-05 ACACAAGGTC AAAGGTCA AATCCCAATC chr16:70669394-70669474 40 2.89e-05 GTTGGAGGTC AGAGGTCA GAGGTCGGAA chr6:84302634-84302714 37 2.89e-05 TCACCAGATA AGAGGTCA GCAGTGAGAG chr22:24921513-24921593 30 2.89e-05 ATCAGTGCCA AGAGGTCA CTGTCAACGA chr9:33165821-33165901 56 2.89e-05 GAAACAGGCT AGAGGTCA GAGTTCAGAT chr15:70725631-70725711 39 2.89e-05 GCCAGGGGTC AGAGGTCA CCGCCTGCAC chr1:45142324-45142404 57 2.89e-05 tgatgggagc agaggtca aattacagtg chr19:10416112-10416192 58 2.89e-05 CTGAAGGGTC AGAGGTCA AAGGGCAGGG chr19:19009548-19009628 49 2.89e-05 GGCCAGGCTC AGAGGTCA AAGGGCATGC chr5:150505884-150505964 47 2.89e-05 GCTGTGGTCA AGAGGTCA AGCAGGAGGA chr1:144530334-144530414 54 2.89e-05 ttggaggtca agaggtca aggctgtact chr9:37362575-37362655 36 2.89e-05 CCTTGCAGGG AGAGGTCA CTGACCTCTT chr19:50865037-50865117 9 2.89e-05 CCTAGGTT AGAGGTCA GAAAGGTGTC chr7:12952814-12952894 68 2.89e-05 TGAAAGGGTC AGAGGTCA TTCTC chr4:185736699-185736779 15 2.89e-05 CACAGCTCGC AGAGGTCA CAGCTATCAC chr7:73144971-73145051 63 2.89e-05 caaaatgaca agaggtca gcaaggggca chr10:72453527-72453607 11 2.89e-05 TGGGGCCTGC AGAGGTCA TGACCTTGGG chr7:133568902-133568982 26 2.89e-05 accaggttca agaggtca aagaagagac chr9:76026570-76026650 53 2.89e-05 TAATCTCTGA AGAGGTCA GAGGTGAGAA chr21:17114515-17114595 45 2.89e-05 GTGTGTGGTG AGAGGTCA TTAGGTCATC chr2:187749450-187749530 50 2.89e-05 TCTACTTGAC AGAGGTCA AAGGGCATTG chr7:72987352-72987432 62 4.30e-05 CTCCCAGGCC AAGGGTCA CTACAGATAA chr6:51778233-51778313 42 4.30e-05 CTTTTCCAGC AAGGGTCA AGGCACAGAT chr12:54688107-54688187 29 4.30e-05 TCTAGGGTCA AAGGGTCA AGTTCAGATC chr12:74946107-74946187 13 4.30e-05 tgactaatgc aAGGGTCA AAGATCATAC chr1:32338553-32338633 8 7.16e-05 agcccgg aggggtca aagctgcagt chr1:228974330-228974410 22 7.16e-05 GAATGACCTC AGGGGTCA GTGACTCATG chr1:221163925-221164005 51 7.16e-05 gtgactcatt caaggtca cccagctgag chr18:55578181-55578261 36 7.16e-05 TGCTATGAGC AGGGGTCA CCAGCAGAGG chr1:154469520-154469600 28 7.16e-05 AGATTTCATT AGGGGTCA CAGTCCAGTG chr17:14276544-14276624 45 7.16e-05 TGGCCAACAG AGGGGTCA GAGGCCAGAA chr17:7370343-7370423 37 7.16e-05 GTGAAGGTCA AGGGGTCA TGACCTCTGA chr2:72025592-72025672 9 7.16e-05 GTCAGGCC AGGGGTCA CTGCAGGCTC chr6:143419342-143419422 29 7.16e-05 gaagtctaat caaggtca tcagtaacca chr22:43659319-43659399 51 7.16e-05 TTATGAGGTC AGGGGTCA AGTGAGAGGT chr17:16391900-16391980 22 7.16e-05 ctgctgggcc caaggtca cagctgactg chr1:18458715-18458795 57 7.16e-05 TGACCTATGA CAAGGTCA TATCTATGAC chr10:82026403-82026483 70 7.16e-05 CCTCTGACCG CAAGGTCA AAC chr1:61557395-61557475 6 7.16e-05 CGTGG CAAGGTCA CAATTTAAGT chr11:47961665-47961745 56 7.16e-05 gtgacttgcc caaggtca AGAGGCCAAA chr6:105483299-105483379 42 7.16e-05 CCTATTCTTA CAAGGTCA ACATCTGAGG chr3:193316097-193316177 20 7.16e-05 aagtagaggg caaggtca tctactgaga chr8:123772616-123772696 35 7.16e-05 GTTAGGGTCA AGGGGTCA ACCTGAACTG chr16:80022113-80022193 59 7.16e-05 ACAGAGTGAA AGGGGTCA TTCTGGAGAA chr6:126109099-126109179 29 7.16e-05 gtagtttacc caaggtca gcacgtggtg chr11:15601721-15601801 26 8.66e-05 AACAAaggtc taaggtca agttctggct chr4:139359831-139359911 72 8.66e-05 gggctagaac taaggtca c chr1:176660968-176661048 53 8.66e-05 TGCCCAACTT TAAGGTCA TGACCTTGCT chr15:58574655-58574735 31 1.01e-04 aaggaggtca gaaggtca gcctggattc chr3:14294420-14294500 52 1.01e-04 CCCAGTGGGT GAAGGTCA GATAGCTGAG chr18:53331248-53331328 27 1.01e-04 GAGGAGGTCA GAAGGTCA AAGGTGACAA chr2:99029513-99029593 43 1.01e-04 CTTGAGGGCA GAAGGTCA AATTCTTATC chr11:12889249-12889329 2 1.15e-04 C CGAGGTCA TCATGGGGTC chr13:60275591-60275671 17 1.30e-04 taggtcagtt tgaggtca gaggccaagt chr11:62687540-62687620 35 1.30e-04 GCCTGGTGGC TGAGGTCA GAGGGCAGAG chr1:48221235-48221315 19 1.30e-04 GTTTAGAGCC TGAGGTCA CGACCTGAGT chr10:33260664-33260744 22 1.57e-04 cacagagatc aaagggca aaagagtaaa chr15:29360322-29360402 18 1.57e-04 AGGCCACAGG GGAGGTCA CAGGTCAAGC chr9:95871622-95871702 45 1.57e-04 TCCAGGTCCT GGAGGTCA AGGCCCAGTG chrX:47583228-47583308 21 1.57e-04 ACAAAGGTGA AAAGGGCA GCAAAGACCT chr15:65217682-65217762 59 1.57e-04 TAGAAGGTGA GGAGGTCA CTTCCTAGTG chr10:9865393-9865473 60 1.57e-04 aactctaaat aaagggca ggtcaaagtt chr8:20484950-20485030 59 1.57e-04 CTTGACCCCA GGAGGTCA AAGTTACATG chr4:153449358-153449438 51 1.57e-04 AGATAGAAAG AAAGGGCA AAGGTGACAC chr10:32478492-32478572 3 1.57e-04 TT GGAGGTCA AAGTTCCATC chr5:132759650-132759730 57 1.57e-04 GCACGAGGGC AAAGGGCA CCCGCAGACC chr9:116036879-116036959 38 1.57e-04 tgtagaggtt aaagggca caggttttaa chr1:23428163-23428243 24 1.57e-04 AATGGGGTTA GGAGGTCA CTTATCTCTG chr21:36842860-36842940 32 1.57e-04 ACCCATATGT GGAGGTCA TCTGATAAGC chr3:186928869-186928949 13 1.72e-04 GACCCTTCCA ACAGGTCA TCTGATTGTT chr1:182328917-182328997 23 1.72e-04 CTCAGGGTCA ACAGGTCA TCCTTGCCTT chr16:75163825-75163905 17 1.85e-04 aagagggcca agagggca acttgaaaga chrX:129088951-129089031 27 2.15e-04 GGGAGGTTCC AAAGGCCA CAAATCTCAG chr3:118960464-118960544 62 2.15e-04 GCAGTTGAGG ATAGGTCA GTGAAATAGG chr5:172305050-172305130 37 2.15e-04 AGGGGAGGGG AAAGGCCA AGATTTTGTG chr11:66601900-66601980 45 2.15e-04 ACTAAGGATG ATAGGTCA AATTCTTTGA chr1:183914699-183914779 52 2.15e-04 TCCCCACCAC AAAGGCCA GAGAAAGAGA chr6:6665828-6665908 7 2.15e-04 AGGTCA AAAGGCCA GCCTGTCTGA chr6:143195951-143196031 25 2.29e-04 ctaggtaggg cagggtca gaggtcccct chr8:125488626-125488706 14 2.29e-04 aaccaggaaa cagggtca tagaggttaa chr7:135734023-135734103 5 2.58e-04 atct agaggcca cctgcattcc chr1:201636791-201636871 27 2.58e-04 TCTGAGGTTT TAGGGTCA AGTAACAAAC chr14:52351175-52351255 38 2.58e-04 gtaatgtgct tagggtca cacagctgaa chr12:122791118-12279119 51 2.58e-04 GCTCAAGATC AGAGGCCA TGACCTTTAA chr20:35502110-35502190 17 2.71e-04 tctctagtcc gagggtca taaGGTTTGA chr11:62235372-62235452 59 2.85e-04 gacacagtgc cggggtca agggctcaaa chr4:153503104-153503184 32 2.85e-04 CACTCTGACC CGGGGTCA TTTCTTATCT chr16:11243029-11243109 43 2.99e-04 CTTGACCCCA TGGGGTCA CTGAGGCCCT chr16:69499323-69499403 29 2.99e-04 AACAGAGTGG TGGGGTCA AAGTTTATCT chr5:78054100-78054180 3 2.99e-04 CT TGGGGTCA AAAAGATTTG chr19:1068230-1068310 72 2.99e-04 TTGACCCCTG TGGGGTCA G chr1:110946538-110946618 40 2.99e-04 GGAATATCAG TGGGGTCA GAGGTTAGCT chr5:147777961-147778041 36 3.82e-04 ATGTGACCTT AAAGGTTA AAAAAAAAAA chr16:75729739-75729819 67 3.82e-04 TAACACCTCC AGGGGGCA GTATCA chr10:50707523-50707603 34 3.82e-04 ACACTACTGT AAAGGTTA TCTCCAAATC chr13:28982412-28982492 60 3.96e-04 GGGCAGTTAC TAAGGGCA CAAGCCCTAG chr4:48807101-48807181 35 3.96e-04 cactaggtca taagggca ttgcagcttc chr8:11799850-11799930 7 4.53e-04 TGACCC CCAGGTCA GCTCCTTGTC chr11:94877680-94877760 60 4.53e-04 CCTGCTCCAG ATGGGTCA AGTTCCTGCA chr6:15970901-15970981 48 4.53e-04 TTCCACAAGT ATGGGTCA ATCACTTTGA chr3:196347204-196347284 44 4.53e-04 gcacttgacc ccaggtca cacaaggggg chr2:201232024-201232104 45 4.53e-04 AAGCCCACTT CCAGGTCA GGGCCATGAC chr6:14728264-14728344 5 5.24e-04 AGCT GCAGGTCA ATAACGCAAC chr5:93430937-93431017 69 5.24e-04 atccgtaaag tgagggca aagg chr6:126269752-126269832 55 6.10e-04 tccaatgacc ttaggtca attctgagtc chr11:134198457-13419853 4 6.10e-04 TGG TAAGGCCA AAGATCAAGT chr19:49713412-49713492 72 6.53e-04 TCGGCAAAGT ACAGGGCA A chr5:55213966-55214046 66 7.09e-04 GACCTTTGTG GGAGGCCA CTAGGAG chr6:36650164-36650244 50 7.52e-04 CTGTATGACT CAGGGGCA AGTCTCATAT chr7:99137109-99137189 43 7.52e-04 GTTATATTTC AAGGGTTA TGTCCCTTCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAGGTCA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:2203546-2203626 1.5e-05 6_[+1]_66 chr9:38195875-38195955 1.5e-05 31_[+1]_41 chr7:91481881-91481961 1.5e-05 31_[+1]_41 chr2:64246990-64247070 1.5e-05 25_[+1]_47 chr11:129830246-12983032 1.5e-05 44_[+1]_28 chr6:32208665-32208745 1.5e-05 71_[+1]_1 chr17:75385617-75385697 1.5e-05 62_[+1]_10 chr3:43799299-43799379 1.5e-05 44_[+1]_28 chr12:117141171-11714125 1.5e-05 71_[+1]_1 chr4:53886098-53886178 1.5e-05 53_[+1]_19 chr18:12767162-12767242 1.5e-05 18_[+1]_54 chr6:7106558-7106638 1.5e-05 56_[+1]_16 chr7:129425030-129425110 1.5e-05 37_[+1]_35 chr1:180940012-180940092 1.5e-05 39_[+1]_33 chrX:118611840-118611920 1.5e-05 14_[+1]_58 chr3:114546482-114546562 1.5e-05 10_[+1]_62 chr10:121484544-12148462 1.5e-05 12_[+1]_60 chr19:19745175-19745255 1.5e-05 42_[+1]_30 chr1:8499678-8499758 1.5e-05 9_[+1]_63 chr1:183905308-183905388 1.5e-05 46_[+1]_26 chr21:39665896-39665976 1.5e-05 22_[+1]_50 chr6:26219225-26219305 1.5e-05 40_[+1]_32 chr19:49136797-49136877 1.5e-05 50_[+1]_22 chr7:103815431-103815511 1.5e-05 4_[+1]_68 chr4:144162250-144162330 1.5e-05 23_[+1]_49 chr21:40376102-40376182 1.5e-05 50_[+1]_22 chr2:102667375-102667455 1.5e-05 30_[+1]_42 chr5:149501833-149501913 1.5e-05 21_[+1]_51 chr1:27933989-27934069 1.5e-05 35_[+1]_37 chr2:158795268-158795348 1.5e-05 17_[+1]_55 chr4:140524946-140525026 1.5e-05 43_[+1]_29 chr16:53058041-53058121 1.5e-05 2_[+1]_70 chr11:76316944-76317024 1.5e-05 51_[+1]_21 chr20:35513933-35514013 1.5e-05 7_[+1]_65 chr17:3623426-3623506 1.5e-05 28_[+1]_44 chr19:10197307-10197387 1.5e-05 36_[+1]_36 chr3:49195701-49195781 1.5e-05 49_[+1]_23 chr7:112348476-112348556 1.5e-05 10_[+1]_62 chr7:106456252-106456332 1.5e-05 52_[+1]_20 chr16:70669394-70669474 2.9e-05 39_[+1]_33 chr6:84302634-84302714 2.9e-05 36_[+1]_36 chr22:24921513-24921593 2.9e-05 29_[+1]_43 chr9:33165821-33165901 2.9e-05 55_[+1]_17 chr15:70725631-70725711 2.9e-05 38_[+1]_34 chr1:45142324-45142404 2.9e-05 56_[+1]_16 chr19:10416112-10416192 2.9e-05 57_[+1]_15 chr19:19009548-19009628 2.9e-05 48_[+1]_24 chr5:150505884-150505964 2.9e-05 46_[+1]_26 chr1:144530334-144530414 2.9e-05 53_[+1]_19 chr9:37362575-37362655 2.9e-05 35_[+1]_37 chr19:50865037-50865117 2.9e-05 8_[+1]_64 chr7:12952814-12952894 2.9e-05 67_[+1]_5 chr4:185736699-185736779 2.9e-05 14_[+1]_58 chr7:73144971-73145051 2.9e-05 62_[+1]_10 chr10:72453527-72453607 2.9e-05 10_[+1]_62 chr7:133568902-133568982 2.9e-05 25_[+1]_47 chr9:76026570-76026650 2.9e-05 52_[+1]_20 chr21:17114515-17114595 2.9e-05 44_[+1]_28 chr2:187749450-187749530 2.9e-05 49_[+1]_23 chr7:72987352-72987432 4.3e-05 61_[+1]_11 chr6:51778233-51778313 4.3e-05 41_[+1]_31 chr12:54688107-54688187 4.3e-05 28_[+1]_44 chr12:74946107-74946187 4.3e-05 12_[+1]_60 chr1:32338553-32338633 7.2e-05 7_[+1]_65 chr1:228974330-228974410 7.2e-05 21_[+1]_51 chr1:221163925-221164005 7.2e-05 50_[+1]_22 chr18:55578181-55578261 7.2e-05 35_[+1]_37 chr1:154469520-154469600 7.2e-05 27_[+1]_45 chr17:14276544-14276624 7.2e-05 44_[+1]_28 chr17:7370343-7370423 7.2e-05 36_[+1]_36 chr2:72025592-72025672 7.2e-05 8_[+1]_64 chr6:143419342-143419422 7.2e-05 28_[+1]_44 chr22:43659319-43659399 7.2e-05 50_[+1]_22 chr17:16391900-16391980 7.2e-05 21_[+1]_51 chr1:18458715-18458795 7.2e-05 56_[+1]_16 chr10:82026403-82026483 7.2e-05 69_[+1]_3 chr1:61557395-61557475 7.2e-05 5_[+1]_67 chr11:47961665-47961745 7.2e-05 55_[+1]_17 chr6:105483299-105483379 7.2e-05 41_[+1]_31 chr3:193316097-193316177 7.2e-05 19_[+1]_53 chr8:123772616-123772696 7.2e-05 34_[+1]_38 chr16:80022113-80022193 7.2e-05 58_[+1]_14 chr6:126109099-126109179 7.2e-05 28_[+1]_44 chr11:15601721-15601801 8.7e-05 25_[+1]_47 chr4:139359831-139359911 8.7e-05 71_[+1]_1 chr1:176660968-176661048 8.7e-05 52_[+1]_20 chr15:58574655-58574735 0.0001 30_[+1]_42 chr3:14294420-14294500 0.0001 51_[+1]_21 chr18:53331248-53331328 0.0001 26_[+1]_46 chr2:99029513-99029593 0.0001 42_[+1]_30 chr11:12889249-12889329 0.00012 1_[+1]_71 chr13:60275591-60275671 0.00013 16_[+1]_56 chr11:62687540-62687620 0.00013 34_[+1]_38 chr1:48221235-48221315 0.00013 18_[+1]_54 chr10:33260664-33260744 0.00016 21_[+1]_51 chr15:29360322-29360402 0.00016 17_[+1]_55 chr9:95871622-95871702 0.00016 44_[+1]_28 chrX:47583228-47583308 0.00016 20_[+1]_52 chr15:65217682-65217762 0.00016 58_[+1]_14 chr10:9865393-9865473 0.00016 59_[+1]_13 chr8:20484950-20485030 0.00016 58_[+1]_14 chr4:153449358-153449438 0.00016 50_[+1]_22 chr10:32478492-32478572 0.00016 2_[+1]_70 chr5:132759650-132759730 0.00016 56_[+1]_16 chr9:116036879-116036959 0.00016 37_[+1]_35 chr1:23428163-23428243 0.00016 23_[+1]_49 chr21:36842860-36842940 0.00016 31_[+1]_41 chr3:186928869-186928949 0.00017 12_[+1]_60 chr1:182328917-182328997 0.00017 22_[+1]_50 chr16:75163825-75163905 0.00019 16_[+1]_56 chrX:129088951-129089031 0.00021 26_[+1]_46 chr3:118960464-118960544 0.00021 61_[+1]_11 chr5:172305050-172305130 0.00021 36_[+1]_36 chr11:66601900-66601980 0.00021 44_[+1]_28 chr1:183914699-183914779 0.00021 51_[+1]_21 chr6:6665828-6665908 0.00021 6_[+1]_66 chr6:143195951-143196031 0.00023 24_[+1]_48 chr8:125488626-125488706 0.00023 13_[+1]_59 chr7:135734023-135734103 0.00026 4_[+1]_68 chr1:201636791-201636871 0.00026 26_[+1]_46 chr14:52351175-52351255 0.00026 37_[+1]_35 chr12:122791118-12279119 0.00026 50_[+1]_22 chr20:35502110-35502190 0.00027 16_[+1]_56 chr11:62235372-62235452 0.00029 58_[+1]_14 chr4:153503104-153503184 0.00029 31_[+1]_41 chr16:11243029-11243109 0.0003 42_[+1]_30 chr16:69499323-69499403 0.0003 28_[+1]_44 chr5:78054100-78054180 0.0003 2_[+1]_70 chr19:1068230-1068310 0.0003 71_[+1]_1 chr1:110946538-110946618 0.0003 39_[+1]_33 chr5:147777961-147778041 0.00038 35_[+1]_37 chr16:75729739-75729819 0.00038 66_[+1]_6 chr10:50707523-50707603 0.00038 33_[+1]_39 chr13:28982412-28982492 0.0004 59_[+1]_13 chr4:48807101-48807181 0.0004 34_[+1]_38 chr8:11799850-11799930 0.00045 6_[+1]_66 chr11:94877680-94877760 0.00045 59_[+1]_13 chr6:15970901-15970981 0.00045 47_[+1]_25 chr3:196347204-196347284 0.00045 43_[+1]_29 chr2:201232024-201232104 0.00045 44_[+1]_28 chr6:14728264-14728344 0.00052 4_[+1]_68 chr5:93430937-93431017 0.00052 68_[+1]_4 chr6:126269752-126269832 0.00061 54_[+1]_18 chr11:134198457-13419853 0.00061 3_[+1]_69 chr19:49713412-49713492 0.00065 71_[+1]_1 chr5:55213966-55214046 0.00071 65_[+1]_7 chr6:36650164-36650244 0.00075 49_[+1]_23 chr7:99137109-99137189 0.00075 42_[+1]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAGGTCA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ARAGGTCA width=8 seqs=148 chr1:2203546-2203626 ( 7) AAAGGTCA 1 chr9:38195875-38195955 ( 32) AAAGGTCA 1 chr7:91481881-91481961 ( 32) AAAGGTCA 1 chr2:64246990-64247070 ( 26) AAAGGTCA 1 chr11:129830246-12983032 ( 45) AAAGGTCA 1 chr6:32208665-32208745 ( 72) AAAGGTCA 1 chr17:75385617-75385697 ( 63) AAAGGTCA 1 chr3:43799299-43799379 ( 45) AAAGGTCA 1 chr12:117141171-11714125 ( 72) AAAGGTCA 1 chr4:53886098-53886178 ( 54) AAAGGTCA 1 chr18:12767162-12767242 ( 19) AAAGGTCA 1 chr6:7106558-7106638 ( 57) AAAGGTCA 1 chr7:129425030-129425110 ( 38) AAAGGTCA 1 chr1:180940012-180940092 ( 40) AAAGGTCA 1 chrX:118611840-118611920 ( 15) AAAGGTCA 1 chr3:114546482-114546562 ( 11) AAAGGTCA 1 chr10:121484544-12148462 ( 13) AAAGGTCA 1 chr19:19745175-19745255 ( 43) AAAGGTCA 1 chr1:8499678-8499758 ( 10) AAAGGTCA 1 chr1:183905308-183905388 ( 47) AAAGGTCA 1 chr21:39665896-39665976 ( 23) AAAGGTCA 1 chr6:26219225-26219305 ( 41) AAAGGTCA 1 chr19:49136797-49136877 ( 51) AAAGGTCA 1 chr7:103815431-103815511 ( 5) AAAGGTCA 1 chr4:144162250-144162330 ( 24) AAAGGTCA 1 chr21:40376102-40376182 ( 51) AAAGGTCA 1 chr2:102667375-102667455 ( 31) AAAGGTCA 1 chr5:149501833-149501913 ( 22) AAAGGTCA 1 chr1:27933989-27934069 ( 36) AAAGGTCA 1 chr2:158795268-158795348 ( 18) AAAGGTCA 1 chr4:140524946-140525026 ( 44) AAAGGTCA 1 chr16:53058041-53058121 ( 3) AAAGGTCA 1 chr11:76316944-76317024 ( 52) AAAGGTCA 1 chr20:35513933-35514013 ( 8) AAAGGTCA 1 chr17:3623426-3623506 ( 29) AAAGGTCA 1 chr19:10197307-10197387 ( 37) AAAGGTCA 1 chr3:49195701-49195781 ( 50) AAAGGTCA 1 chr7:112348476-112348556 ( 11) AAAGGTCA 1 chr7:106456252-106456332 ( 53) AAAGGTCA 1 chr16:70669394-70669474 ( 40) AGAGGTCA 1 chr6:84302634-84302714 ( 37) AGAGGTCA 1 chr22:24921513-24921593 ( 30) AGAGGTCA 1 chr9:33165821-33165901 ( 56) AGAGGTCA 1 chr15:70725631-70725711 ( 39) AGAGGTCA 1 chr1:45142324-45142404 ( 57) AGAGGTCA 1 chr19:10416112-10416192 ( 58) AGAGGTCA 1 chr19:19009548-19009628 ( 49) AGAGGTCA 1 chr5:150505884-150505964 ( 47) AGAGGTCA 1 chr1:144530334-144530414 ( 54) AGAGGTCA 1 chr9:37362575-37362655 ( 36) AGAGGTCA 1 chr19:50865037-50865117 ( 9) AGAGGTCA 1 chr7:12952814-12952894 ( 68) AGAGGTCA 1 chr4:185736699-185736779 ( 15) AGAGGTCA 1 chr7:73144971-73145051 ( 63) AGAGGTCA 1 chr10:72453527-72453607 ( 11) AGAGGTCA 1 chr7:133568902-133568982 ( 26) AGAGGTCA 1 chr9:76026570-76026650 ( 53) AGAGGTCA 1 chr21:17114515-17114595 ( 45) AGAGGTCA 1 chr2:187749450-187749530 ( 50) AGAGGTCA 1 chr7:72987352-72987432 ( 62) AAGGGTCA 1 chr6:51778233-51778313 ( 42) AAGGGTCA 1 chr12:54688107-54688187 ( 29) AAGGGTCA 1 chr12:74946107-74946187 ( 13) AAGGGTCA 1 chr1:32338553-32338633 ( 8) AGGGGTCA 1 chr1:228974330-228974410 ( 22) AGGGGTCA 1 chr1:221163925-221164005 ( 51) CAAGGTCA 1 chr18:55578181-55578261 ( 36) AGGGGTCA 1 chr1:154469520-154469600 ( 28) AGGGGTCA 1 chr17:14276544-14276624 ( 45) AGGGGTCA 1 chr17:7370343-7370423 ( 37) AGGGGTCA 1 chr2:72025592-72025672 ( 9) AGGGGTCA 1 chr6:143419342-143419422 ( 29) CAAGGTCA 1 chr22:43659319-43659399 ( 51) AGGGGTCA 1 chr17:16391900-16391980 ( 22) CAAGGTCA 1 chr1:18458715-18458795 ( 57) CAAGGTCA 1 chr10:82026403-82026483 ( 70) CAAGGTCA 1 chr1:61557395-61557475 ( 6) CAAGGTCA 1 chr11:47961665-47961745 ( 56) CAAGGTCA 1 chr6:105483299-105483379 ( 42) CAAGGTCA 1 chr3:193316097-193316177 ( 20) CAAGGTCA 1 chr8:123772616-123772696 ( 35) AGGGGTCA 1 chr16:80022113-80022193 ( 59) AGGGGTCA 1 chr6:126109099-126109179 ( 29) CAAGGTCA 1 chr11:15601721-15601801 ( 26) TAAGGTCA 1 chr4:139359831-139359911 ( 72) TAAGGTCA 1 chr1:176660968-176661048 ( 53) TAAGGTCA 1 chr15:58574655-58574735 ( 31) GAAGGTCA 1 chr3:14294420-14294500 ( 52) GAAGGTCA 1 chr18:53331248-53331328 ( 27) GAAGGTCA 1 chr2:99029513-99029593 ( 43) GAAGGTCA 1 chr11:12889249-12889329 ( 2) CGAGGTCA 1 chr13:60275591-60275671 ( 17) TGAGGTCA 1 chr11:62687540-62687620 ( 35) TGAGGTCA 1 chr1:48221235-48221315 ( 19) TGAGGTCA 1 chr10:33260664-33260744 ( 22) AAAGGGCA 1 chr15:29360322-29360402 ( 18) GGAGGTCA 1 chr9:95871622-95871702 ( 45) GGAGGTCA 1 chrX:47583228-47583308 ( 21) AAAGGGCA 1 chr15:65217682-65217762 ( 59) GGAGGTCA 1 chr10:9865393-9865473 ( 60) AAAGGGCA 1 chr8:20484950-20485030 ( 59) GGAGGTCA 1 chr4:153449358-153449438 ( 51) AAAGGGCA 1 chr10:32478492-32478572 ( 3) GGAGGTCA 1 chr5:132759650-132759730 ( 57) AAAGGGCA 1 chr9:116036879-116036959 ( 38) AAAGGGCA 1 chr1:23428163-23428243 ( 24) GGAGGTCA 1 chr21:36842860-36842940 ( 32) GGAGGTCA 1 chr3:186928869-186928949 ( 13) ACAGGTCA 1 chr1:182328917-182328997 ( 23) ACAGGTCA 1 chr16:75163825-75163905 ( 17) AGAGGGCA 1 chrX:129088951-129089031 ( 27) AAAGGCCA 1 chr3:118960464-118960544 ( 62) ATAGGTCA 1 chr5:172305050-172305130 ( 37) AAAGGCCA 1 chr11:66601900-66601980 ( 45) ATAGGTCA 1 chr1:183914699-183914779 ( 52) AAAGGCCA 1 chr6:6665828-6665908 ( 7) AAAGGCCA 1 chr6:143195951-143196031 ( 25) CAGGGTCA 1 chr8:125488626-125488706 ( 14) CAGGGTCA 1 chr7:135734023-135734103 ( 5) AGAGGCCA 1 chr1:201636791-201636871 ( 27) TAGGGTCA 1 chr14:52351175-52351255 ( 38) TAGGGTCA 1 chr12:122791118-12279119 ( 51) AGAGGCCA 1 chr20:35502110-35502190 ( 17) GAGGGTCA 1 chr11:62235372-62235452 ( 59) CGGGGTCA 1 chr4:153503104-153503184 ( 32) CGGGGTCA 1 chr16:11243029-11243109 ( 43) TGGGGTCA 1 chr16:69499323-69499403 ( 29) TGGGGTCA 1 chr5:78054100-78054180 ( 3) TGGGGTCA 1 chr19:1068230-1068310 ( 72) TGGGGTCA 1 chr1:110946538-110946618 ( 40) TGGGGTCA 1 chr5:147777961-147778041 ( 36) AAAGGTTA 1 chr16:75729739-75729819 ( 67) AGGGGGCA 1 chr10:50707523-50707603 ( 34) AAAGGTTA 1 chr13:28982412-28982492 ( 60) TAAGGGCA 1 chr4:48807101-48807181 ( 35) TAAGGGCA 1 chr8:11799850-11799930 ( 7) CCAGGTCA 1 chr11:94877680-94877760 ( 60) ATGGGTCA 1 chr6:15970901-15970981 ( 48) ATGGGTCA 1 chr3:196347204-196347284 ( 44) CCAGGTCA 1 chr2:201232024-201232104 ( 45) CCAGGTCA 1 chr6:14728264-14728344 ( 5) GCAGGTCA 1 chr5:93430937-93431017 ( 69) TGAGGGCA 1 chr6:126269752-126269832 ( 55) TTAGGTCA 1 chr11:134198457-13419853 ( 4) TAAGGCCA 1 chr19:49713412-49713492 ( 72) ACAGGGCA 1 chr5:55213966-55214046 ( 66) GGAGGCCA 1 chr6:36650164-36650244 ( 50) CAGGGGCA 1 chr7:99137109-99137189 ( 43) AAGGGTTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAGGTCA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.36464 E= 1.5e-147 139 -98 -135 -107 115 -242 60 -292 166 -1385 -21 -1385 -1385 -1385 205 -1385 -1385 -1385 205 -1385 -1385 -223 -146 175 -1385 195 -1385 -366 200 -1385 -1385 -1385 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAGGTCA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 148 E= 1.5e-147 0.655405 0.128378 0.094595 0.121622 0.554054 0.047297 0.364865 0.033784 0.790541 0.000000 0.209459 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.054054 0.087838 0.858108 0.000000 0.979730 0.000000 0.020270 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAGGTCA MEME-1 regular expression -------------------------------------------------------------------------------- A[AG][AG]GGTCA -------------------------------------------------------------------------------- Time 4.81 secs. ******************************************************************************** ******************************************************************************** MOTIF TGACCTYT MEME-2 width = 8 sites = 128 llr = 1027 E-value = 1.5e-111 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGACCTYT MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::9::::1 pos.-specific C :11aa231 probability G :9::::11 matrix T a::::868 bits 2.1 * ** 1.8 * ** 1.6 * ** 1.4 ***** Relative 1.2 ****** Entropy 1.0 ****** (11.6 bits) 0.8 ****** * 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGACCTTT consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACCTYT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr5:55213966-55214046 55 1.66e-05 GTGACTCCCT TGACCTTT GTGGGAGGCC chr16:56389998-56390078 63 1.66e-05 CCTGGTAGCA TGACCTTT TGGCCTTTGT chr11:120959272-12095935 53 1.66e-05 TTTGACCTTT TGACCTTT GTTACATAAT chr8:38135796-38135876 24 1.66e-05 CCTGCAAGAC TGACCTTT GGCCGCACTC chr7:107204962-107205042 40 1.66e-05 ATGAGACCTT TGACCTTT TGCCTTTTCT chr3:45108073-45108153 70 1.66e-05 agtgtggtgg tgaccttt agc chr4:38385334-38385414 2 1.66e-05 T TGACCTTT ATACTCCTCT chr12:27159906-27159986 38 1.66e-05 GTGTAACAGA TGACCTTT GACCTTAAAT chr1:45142324-45142404 18 1.66e-05 aagttgttgg tgaccttt acaagtgcag chr17:37027845-37027925 56 1.66e-05 GCTTCCTCAG TGACCTTT GGCCTCTGAG chr8:27180400-27180480 45 1.66e-05 ccaccccact tgaccttt ggctcttcat chr4:124365642-124365722 45 1.66e-05 TGTTCGGAAG TGACCTTT TGCCCTTGAT chr16:79985439-79985519 29 1.66e-05 AATCTTAATC TGACCTTT CCTTCTTCTC chr10:32241065-32241145 35 1.66e-05 gtgtgcagtt tgaccttt tgacttgggg chr6:112365089-112365169 38 1.66e-05 TGCAGAAGGG TGACCTTT AGCCTTCTGC chr13:91789205-91789285 59 1.66e-05 TCATGACCTT TGACCTTT GGCAAATCAT chr16:75163825-75163905 48 1.66e-05 gtgtgtggtt tgaccttt tgacttgtgg chr2:9843957-9844037 26 1.66e-05 tgctagcctt tgaccttt ggaggcttgg chr5:78054100-78054180 72 1.66e-05 TTTAAACCTA TGACCTTT A chr10:79609027-79609107 47 1.66e-05 CCAGAGAGGT TGACCTTT GCCCTTGGGC chr2:38861913-38861993 48 1.66e-05 GCTCTGAGTT TGACCTTT CTCAAAGCAG chr7:121034988-121035068 64 1.66e-05 CTATCAGCAT TGACCTTT Actctcggg chr17:8080537-8080617 33 1.66e-05 GGCGACCTCA TGACCTTT GGGCCTCAGC chr5:149730204-149730284 22 1.66e-05 CTGGTGACCT TGACCTTT TGAGAGAACT chr1:61557395-61557475 56 1.66e-05 ACCAGGCATT TGACCTTT TAGATAAAGT chr16:86962285-86962365 49 1.66e-05 ttgaaccaaa tgaccttt tgacctcttg chr16:80022113-80022193 36 1.66e-05 CTGGTTCAGT TGACCTTT GGGTCACAGA chr19:49713412-49713492 28 1.66e-05 TGACCTCAAG TGACCTTT GACCTCTGGC chr12:65587067-65587147 19 1.66e-05 gtgtgcggtt tgaccttt tgacttgggg chr18:10081626-10081706 22 1.66e-05 GCAAGCATGT TGACCTTT GACAGCTGGC chr12:122791118-12279119 59 1.66e-05 TCAGAGGCCA TGACCTTT AACATGGGCC chr9:75763487-75763567 54 1.66e-05 AAGCAGAGTT TGACCTTT TGACCTTAAC chr1:23428163-23428243 40 1.66e-05 CACTTATCTC TGACCTTT TGGCCCTAAG chr12:31910158-31910238 57 3.29e-05 acaaatcctg tgacctct ggccacagga chr13:28982412-28982492 2 3.29e-05 T TGACCTCT GACACCCCAC chr4:154331171-154331251 38 3.29e-05 acttgctgtg tgacctct tgaccctctc chr9:130843460-130843540 50 3.29e-05 TTCACCCCCT TGACCTCT CTCCTGCCTG chr5:138485668-138485748 50 3.29e-05 CCACAGTTTG TGACCTCT GATTATGAAT chr17:7370343-7370423 45 3.29e-05 CAAGGGGTCA TGACCTCT GAAGTCACAG chr19:50919365-50919445 31 3.29e-05 CTTAGCCCCA TGACCTCT GACCTCCTGA chr4:48807101-48807181 15 3.29e-05 tgacagcgtg tgacctct gacactaggt chr9:37362575-37362655 45 3.29e-05 GAGAGGTCAC TGACCTCT TAAGCCTGTG chr1:27675512-27675592 33 3.29e-05 CCCCGTACTG TGACCTCT ACCCCTTTCT chr17:54987726-54987806 17 3.29e-05 GTTTCAAACT TGACCTCT GTGACACTGC chr17:28067078-28067158 25 3.29e-05 GTATCTGTTT TGACCTCT GAACTCCTTA chr19:1068230-1068310 49 3.29e-05 CTCGGCCCTG TGACCTCT GGCCTTTGAC chr12:56596294-56596374 72 3.29e-05 tgtagtttgc tgacctct g chr6:149450738-149450818 45 3.29e-05 ATCTGACCTC TGACCTCT GGCTTCAGTG chr19:46914871-46914951 66 3.29e-05 CTGTGCCCTG TGACCTCT GGTCAGC chr19:51294416-51294496 49 3.29e-05 CTTGCCCTCT TGACCTCT AACCTTTAAC chr4:139359831-139359911 50 3.29e-05 gctatcagct tgacctct gagggggcta chr17:26075266-26075346 52 3.29e-05 GGATGCCCTT TGACCTCT GCTTCCTGCT chr11:66601900-66601980 60 3.29e-05 TCAAATTCTT TGACCTCT GGGCCATTCT chr20:36825074-36825154 39 3.29e-05 GGTCAGACTG TGACCTCT GGGGCTTATC chr1:69945625-69945705 56 3.29e-05 cttggcctct tgacctct tgacccatac chr3:127314357-127314437 36 3.29e-05 CCTTATCAGA TGACCTCT GGGCAGCCAG chr9:35731545-35731625 24 4.93e-05 TGTTGTTTGT TGACCCTT AACCTGACCC chr3:36996385-36996465 30 4.93e-05 ATGCTCTATC TGACCCTT GCCCTTAGCA chr9:111895168-111895248 13 4.93e-05 aactactatc tgaccctt aacagagaaa chr8:19179724-19179804 62 4.93e-05 GCTAAGCCCA TGACCCTT GTGGGTTGAC chr20:42087859-42087939 30 4.93e-05 CCTTGCCCTA TGACCCTT TGGCTGACCT chr3:186928869-186928949 2 4.93e-05 C TGACCCTT CCAACAGGTC chr1:8499678-8499758 19 4.93e-05 GAAAGGTCAA TGACCCTT GGGAACCACA chr15:77359805-77359885 16 4.93e-05 AATTAAACTT TGACCCTT GTTAACAATC chr6:7115539-7115619 32 4.93e-05 TTAACTGATC TGACCCTT GGCCTTCCCC chr21:47438688-47438768 24 4.93e-05 gatcagtgcc tgaccctt atgacctcat chrX:129088951-129089031 4 6.55e-05 GAC TGACCCCT GCCCTGGGAG chr6:36650164-36650244 2 6.55e-05 G TGACCCCT TTATGGGGCA chr11:64027148-64027228 22 8.11e-05 GACTTACCCC TGACCTGT AACCTCTCTA chr19:50865037-50865117 72 8.11e-05 TTTGACTTTC TGACCTGT G chr1:231330889-231330969 58 8.11e-05 ctgccaaatg tgacctgt aggttatcaG chr7:116250325-116250405 30 8.11e-05 tactgggtca tgacctgt ggtttaaaaa chr1:95273790-95273870 24 8.11e-05 GGCTGCGGTT TGACCTGT GGGCCCCTGC chr10:32791008-32791088 22 1.13e-04 tatcccaggt tgacctta gactgctgtg chr6:84302634-84302714 10 1.13e-04 CTGAAGTCC TGACCTTG GCAAAGCACT chr9:95871622-95871702 73 1.13e-04 GCCTGTCCAC TGACCTTG chr1:246859883-246859963 48 1.13e-04 GCCTCACCTT TGACCTTG TCTCAGCAGC chr10:72453527-72453607 19 1.13e-04 GCAGAGGTCA TGACCTTG GGAACTGTGG chr7:129485569-129485649 63 1.13e-04 ccttgctctt tgaccttg ggcaggtctc chr11:129973412-12997349 37 1.13e-04 GCTGATGTGT TGACCTTA GTGGTTGACC chr4:81384816-81384896 37 1.13e-04 cccaacctta tgacctta tttaaccata chr6:20454553-20454633 3 1.13e-04 ca TGACCTTA GAGGTAATAT chr1:176660968-176661048 61 1.13e-04 TTTAAGGTCA TGACCTTG CTTTAGATAT chr6:15970901-15970981 63 1.29e-04 TCAATCACTT TGACCTAT TGACTCTGCA chr1:18458715-18458795 47 1.29e-04 acAAACACAC TGACCTAT GACAAGGTCA chr6:105483299-105483379 20 1.29e-04 CTGTCTATTC TGACCTAT AACCCCTATT chr9:90171869-90171949 36 1.94e-04 GGTGGGCAGT TGACCTTC GGCTTTCCCC chr1:92783539-92783619 42 1.94e-04 GTCTGCTTTG TGACCTCA TTTTGACCTC chr1:154469520-154469600 44 1.94e-04 CACAGTCCAG TGACCTTC AGGGTCACAG chr20:44399895-44399975 30 1.94e-04 AATGCCCTTT TGCCCTTT TGAGTCTCTT chr2:201232024-201232104 59 1.94e-04 GTCAGGGCCA TGACCTCG TGTGGACAGA chr7:137628119-137628199 27 1.94e-04 GGGTGATCTC TGCCCTTT CAACAGCTGG chr1:110632366-110632446 43 1.94e-04 GAAACAGGTT TGCCCTTT CACCTCTGCA chr17:47819830-47819910 33 2.11e-04 TGTGAACTTT TCACCTTT TATCTGAATT chr4:2846238-2846318 34 2.11e-04 GGGCTGTTGG TCACCTTT GCCCTCCCTC chr18:30812130-30812210 6 2.11e-04 AACAG TCACCTTT GACCTGCAGC chr1:2203546-2203626 59 2.44e-04 CACGACCTCT TGCCCTCT GCACAGATGG chr6:26475506-26475586 23 2.44e-04 tgtgacctag tgacCTCC TCCCATCTTT chr1:28481501-28481581 41 2.44e-04 gcccttgccc tgacctcc agctgccact chr4:48625575-48625655 52 2.44e-04 ggccttggtg tgacctcc gacctgacta chr1:201636791-201636871 45 2.61e-04 AGTAACAAAC TCACCTCT CCCTCCCTGT chr19:59069500-59069580 31 2.61e-04 TCGGGGCCCT TCACCTCT GACCCTCAGC chr10:97832593-97832673 45 2.61e-04 GATAACCTTT TCACCTCT GTCCTCCTGT chr1:32338553-32338633 25 2.92e-04 aaagctgcag tgacccgt gatcgcagcc chr1:185210429-185210509 41 2.92e-04 CTTTGAGGCT TGGCCTTT TCACCCTTAG chr2:72317537-72317617 26 2.92e-04 CGGGGCCTCT TGGCCTTT GACCCTGATG chr2:29229733-29229813 42 2.92e-04 CCCAGACCTG TGGCCTTT CCTCTTATCT chr8:100649743-100649823 26 3.09e-04 ttctgttcag taaccttt gtgacctgag chr2:175901423-175901503 44 3.09e-04 GAGTGAAACT TAACCTTT GACTCCTGTT chr11:94877680-94877760 46 3.41e-04 GATTCCAATC TGACCCTG CTCCAGATGG chr8:42000318-42000398 37 3.41e-04 ACCACGCAGA TGACCCTG TGATTGCTTA chr6:105402526-105402606 35 3.74e-04 AATGAGTCGA TAACCTCT GACACCAGTG chr16:11243029-11243109 35 4.53e-04 CAGCGGGACT TGACCCCA TGGGGTCACT chr1:228974330-228974410 66 4.53e-04 CACAATCGAG TGCCCCTT ACGTAAG chr19:46377191-46377271 22 4.53e-04 TTGCTGTCCC TGACCCCA AGGACAGTTT chr3:14294420-14294500 38 4.53e-04 CTTCCACAGC TGACCCCA GTGGGTGAAG chr8:20484950-20485030 51 4.53e-04 TTCCTGGACT TGACCCCA GGAGGTCAAA chr2:169963495-169963575 49 4.53e-04 GCAGGAAATC TGACCCCA GAGACTGACC chr1:211869039-211869119 34 4.53e-04 GCTGCCCCCG TGACCCTC CTCCAGCTGT chr4:185736699-185736779 40 5.00e-04 CACATATCAG TGACCTGG ATAAGAAGGT chr7:135734023-135734103 32 5.33e-04 cttggcttgt tgccccct tatcttcaga chr9:139082270-139082350 54 5.81e-04 AGTCATGGTG TCACCCCT AGAACATCAC chr1:48221235-48221315 3 6.13e-04 GG TCACCTGT TTAGAGCCTG chr14:105485792-10548587 14 6.61e-04 GACTCAACTC TGACCTAA CCTGTCACCT chr11:15601721-15601801 52 8.06e-04 ctcaattagt tggcctgt gtgaacctga chr12:33136454-33136534 40 8.06e-04 agccccgaga taacccct ctccaagcca chr9:124861713-124861793 5 8.06e-04 TTTC TGCCCTAT TAGTATCAGA chr2:64246990-64247070 10 8.88e-04 CCTAGTAAA TGCCCTTC CAAAGGTTAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACCTYT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:55213966-55214046 1.7e-05 54_[+2]_18 chr16:56389998-56390078 1.7e-05 62_[+2]_10 chr11:120959272-12095935 1.7e-05 52_[+2]_20 chr8:38135796-38135876 1.7e-05 23_[+2]_49 chr7:107204962-107205042 1.7e-05 39_[+2]_33 chr3:45108073-45108153 1.7e-05 69_[+2]_3 chr4:38385334-38385414 1.7e-05 1_[+2]_71 chr12:27159906-27159986 1.7e-05 37_[+2]_35 chr1:45142324-45142404 1.7e-05 17_[+2]_55 chr17:37027845-37027925 1.7e-05 55_[+2]_17 chr8:27180400-27180480 1.7e-05 44_[+2]_28 chr4:124365642-124365722 1.7e-05 44_[+2]_28 chr16:79985439-79985519 1.7e-05 28_[+2]_44 chr10:32241065-32241145 1.7e-05 34_[+2]_38 chr6:112365089-112365169 1.7e-05 37_[+2]_35 chr13:91789205-91789285 1.7e-05 58_[+2]_14 chr16:75163825-75163905 1.7e-05 47_[+2]_25 chr2:9843957-9844037 1.7e-05 25_[+2]_47 chr5:78054100-78054180 1.7e-05 71_[+2]_1 chr10:79609027-79609107 1.7e-05 46_[+2]_26 chr2:38861913-38861993 1.7e-05 47_[+2]_25 chr7:121034988-121035068 1.7e-05 63_[+2]_9 chr17:8080537-8080617 1.7e-05 32_[+2]_40 chr5:149730204-149730284 1.7e-05 21_[+2]_51 chr1:61557395-61557475 1.7e-05 55_[+2]_17 chr16:86962285-86962365 1.7e-05 48_[+2]_24 chr16:80022113-80022193 1.7e-05 35_[+2]_37 chr19:49713412-49713492 1.7e-05 27_[+2]_45 chr12:65587067-65587147 1.7e-05 18_[+2]_54 chr18:10081626-10081706 1.7e-05 21_[+2]_51 chr12:122791118-12279119 1.7e-05 58_[+2]_14 chr9:75763487-75763567 1.7e-05 53_[+2]_19 chr1:23428163-23428243 1.7e-05 39_[+2]_33 chr12:31910158-31910238 3.3e-05 56_[+2]_16 chr13:28982412-28982492 3.3e-05 1_[+2]_71 chr4:154331171-154331251 3.3e-05 37_[+2]_35 chr9:130843460-130843540 3.3e-05 49_[+2]_23 chr5:138485668-138485748 3.3e-05 49_[+2]_23 chr17:7370343-7370423 3.3e-05 44_[+2]_28 chr19:50919365-50919445 3.3e-05 30_[+2]_42 chr4:48807101-48807181 3.3e-05 14_[+2]_58 chr9:37362575-37362655 3.3e-05 44_[+2]_28 chr1:27675512-27675592 3.3e-05 32_[+2]_40 chr17:54987726-54987806 3.3e-05 16_[+2]_56 chr17:28067078-28067158 3.3e-05 24_[+2]_48 chr19:1068230-1068310 3.3e-05 48_[+2]_24 chr12:56596294-56596374 3.3e-05 71_[+2]_1 chr6:149450738-149450818 3.3e-05 44_[+2]_28 chr19:46914871-46914951 3.3e-05 65_[+2]_7 chr19:51294416-51294496 3.3e-05 48_[+2]_24 chr4:139359831-139359911 3.3e-05 49_[+2]_23 chr17:26075266-26075346 3.3e-05 51_[+2]_21 chr11:66601900-66601980 3.3e-05 59_[+2]_13 chr20:36825074-36825154 3.3e-05 38_[+2]_34 chr1:69945625-69945705 3.3e-05 55_[+2]_17 chr3:127314357-127314437 3.3e-05 35_[+2]_37 chr9:35731545-35731625 4.9e-05 23_[+2]_49 chr3:36996385-36996465 4.9e-05 29_[+2]_43 chr9:111895168-111895248 4.9e-05 12_[+2]_60 chr8:19179724-19179804 4.9e-05 61_[+2]_11 chr20:42087859-42087939 4.9e-05 29_[+2]_43 chr3:186928869-186928949 4.9e-05 1_[+2]_71 chr1:8499678-8499758 4.9e-05 18_[+2]_54 chr15:77359805-77359885 4.9e-05 15_[+2]_57 chr6:7115539-7115619 4.9e-05 31_[+2]_41 chr21:47438688-47438768 4.9e-05 23_[+2]_49 chrX:129088951-129089031 6.5e-05 3_[+2]_69 chr6:36650164-36650244 6.5e-05 1_[+2]_71 chr11:64027148-64027228 8.1e-05 21_[+2]_51 chr19:50865037-50865117 8.1e-05 71_[+2]_1 chr1:231330889-231330969 8.1e-05 57_[+2]_15 chr7:116250325-116250405 8.1e-05 29_[+2]_43 chr1:95273790-95273870 8.1e-05 23_[+2]_49 chr10:32791008-32791088 0.00011 21_[+2]_51 chr6:84302634-84302714 0.00011 9_[+2]_63 chr9:95871622-95871702 0.00011 72_[+2] chr1:246859883-246859963 0.00011 47_[+2]_25 chr10:72453527-72453607 0.00011 18_[+2]_54 chr7:129485569-129485649 0.00011 62_[+2]_10 chr11:129973412-12997349 0.00011 36_[+2]_36 chr4:81384816-81384896 0.00011 36_[+2]_36 chr6:20454553-20454633 0.00011 2_[+2]_70 chr1:176660968-176661048 0.00011 60_[+2]_12 chr6:15970901-15970981 0.00013 62_[+2]_10 chr1:18458715-18458795 0.00013 46_[+2]_26 chr6:105483299-105483379 0.00013 19_[+2]_53 chr9:90171869-90171949 0.00019 35_[+2]_37 chr1:92783539-92783619 0.00019 41_[+2]_31 chr1:154469520-154469600 0.00019 43_[+2]_29 chr20:44399895-44399975 0.00019 29_[+2]_43 chr2:201232024-201232104 0.00019 58_[+2]_14 chr7:137628119-137628199 0.00019 26_[+2]_46 chr1:110632366-110632446 0.00019 42_[+2]_30 chr17:47819830-47819910 0.00021 32_[+2]_40 chr4:2846238-2846318 0.00021 33_[+2]_39 chr18:30812130-30812210 0.00021 5_[+2]_67 chr1:2203546-2203626 0.00024 58_[+2]_14 chr6:26475506-26475586 0.00024 22_[+2]_50 chr1:28481501-28481581 0.00024 40_[+2]_32 chr4:48625575-48625655 0.00024 51_[+2]_21 chr1:201636791-201636871 0.00026 44_[+2]_28 chr19:59069500-59069580 0.00026 30_[+2]_42 chr10:97832593-97832673 0.00026 44_[+2]_28 chr1:32338553-32338633 0.00029 24_[+2]_48 chr1:185210429-185210509 0.00029 40_[+2]_32 chr2:72317537-72317617 0.00029 25_[+2]_47 chr2:29229733-29229813 0.00029 41_[+2]_31 chr8:100649743-100649823 0.00031 25_[+2]_47 chr2:175901423-175901503 0.00031 43_[+2]_29 chr11:94877680-94877760 0.00034 45_[+2]_27 chr8:42000318-42000398 0.00034 36_[+2]_36 chr6:105402526-105402606 0.00037 34_[+2]_38 chr16:11243029-11243109 0.00045 34_[+2]_38 chr1:228974330-228974410 0.00045 65_[+2]_7 chr19:46377191-46377271 0.00045 21_[+2]_51 chr3:14294420-14294500 0.00045 37_[+2]_35 chr8:20484950-20485030 0.00045 50_[+2]_22 chr2:169963495-169963575 0.00045 48_[+2]_24 chr1:211869039-211869119 0.00045 33_[+2]_39 chr4:185736699-185736779 0.0005 39_[+2]_33 chr7:135734023-135734103 0.00053 31_[+2]_41 chr9:139082270-139082350 0.00058 53_[+2]_19 chr1:48221235-48221315 0.00061 2_[+2]_70 chr14:105485792-10548587 0.00066 13_[+2]_59 chr11:15601721-15601801 0.00081 51_[+2]_21 chr12:33136454-33136534 0.00081 39_[+2]_33 chr9:124861713-124861793 0.00081 4_[+2]_68 chr2:64246990-64247070 0.00089 9_[+2]_63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACCTYT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGACCTYT width=8 seqs=128 chr5:55213966-55214046 ( 55) TGACCTTT 1 chr16:56389998-56390078 ( 63) TGACCTTT 1 chr11:120959272-12095935 ( 53) TGACCTTT 1 chr8:38135796-38135876 ( 24) TGACCTTT 1 chr7:107204962-107205042 ( 40) TGACCTTT 1 chr3:45108073-45108153 ( 70) TGACCTTT 1 chr4:38385334-38385414 ( 2) TGACCTTT 1 chr12:27159906-27159986 ( 38) TGACCTTT 1 chr1:45142324-45142404 ( 18) TGACCTTT 1 chr17:37027845-37027925 ( 56) TGACCTTT 1 chr8:27180400-27180480 ( 45) TGACCTTT 1 chr4:124365642-124365722 ( 45) TGACCTTT 1 chr16:79985439-79985519 ( 29) TGACCTTT 1 chr10:32241065-32241145 ( 35) TGACCTTT 1 chr6:112365089-112365169 ( 38) TGACCTTT 1 chr13:91789205-91789285 ( 59) TGACCTTT 1 chr16:75163825-75163905 ( 48) TGACCTTT 1 chr2:9843957-9844037 ( 26) TGACCTTT 1 chr5:78054100-78054180 ( 72) TGACCTTT 1 chr10:79609027-79609107 ( 47) TGACCTTT 1 chr2:38861913-38861993 ( 48) TGACCTTT 1 chr7:121034988-121035068 ( 64) TGACCTTT 1 chr17:8080537-8080617 ( 33) TGACCTTT 1 chr5:149730204-149730284 ( 22) TGACCTTT 1 chr1:61557395-61557475 ( 56) TGACCTTT 1 chr16:86962285-86962365 ( 49) TGACCTTT 1 chr16:80022113-80022193 ( 36) TGACCTTT 1 chr19:49713412-49713492 ( 28) TGACCTTT 1 chr12:65587067-65587147 ( 19) TGACCTTT 1 chr18:10081626-10081706 ( 22) TGACCTTT 1 chr12:122791118-12279119 ( 59) TGACCTTT 1 chr9:75763487-75763567 ( 54) TGACCTTT 1 chr1:23428163-23428243 ( 40) TGACCTTT 1 chr12:31910158-31910238 ( 57) TGACCTCT 1 chr13:28982412-28982492 ( 2) TGACCTCT 1 chr4:154331171-154331251 ( 38) TGACCTCT 1 chr9:130843460-130843540 ( 50) TGACCTCT 1 chr5:138485668-138485748 ( 50) TGACCTCT 1 chr17:7370343-7370423 ( 45) TGACCTCT 1 chr19:50919365-50919445 ( 31) TGACCTCT 1 chr4:48807101-48807181 ( 15) TGACCTCT 1 chr9:37362575-37362655 ( 45) TGACCTCT 1 chr1:27675512-27675592 ( 33) TGACCTCT 1 chr17:54987726-54987806 ( 17) TGACCTCT 1 chr17:28067078-28067158 ( 25) TGACCTCT 1 chr19:1068230-1068310 ( 49) TGACCTCT 1 chr12:56596294-56596374 ( 72) TGACCTCT 1 chr6:149450738-149450818 ( 45) TGACCTCT 1 chr19:46914871-46914951 ( 66) TGACCTCT 1 chr19:51294416-51294496 ( 49) TGACCTCT 1 chr4:139359831-139359911 ( 50) TGACCTCT 1 chr17:26075266-26075346 ( 52) TGACCTCT 1 chr11:66601900-66601980 ( 60) TGACCTCT 1 chr20:36825074-36825154 ( 39) TGACCTCT 1 chr1:69945625-69945705 ( 56) TGACCTCT 1 chr3:127314357-127314437 ( 36) TGACCTCT 1 chr9:35731545-35731625 ( 24) TGACCCTT 1 chr3:36996385-36996465 ( 30) TGACCCTT 1 chr9:111895168-111895248 ( 13) TGACCCTT 1 chr8:19179724-19179804 ( 62) TGACCCTT 1 chr20:42087859-42087939 ( 30) TGACCCTT 1 chr3:186928869-186928949 ( 2) TGACCCTT 1 chr1:8499678-8499758 ( 19) TGACCCTT 1 chr15:77359805-77359885 ( 16) TGACCCTT 1 chr6:7115539-7115619 ( 32) TGACCCTT 1 chr21:47438688-47438768 ( 24) TGACCCTT 1 chrX:129088951-129089031 ( 4) TGACCCCT 1 chr6:36650164-36650244 ( 2) TGACCCCT 1 chr11:64027148-64027228 ( 22) TGACCTGT 1 chr19:50865037-50865117 ( 72) TGACCTGT 1 chr1:231330889-231330969 ( 58) TGACCTGT 1 chr7:116250325-116250405 ( 30) TGACCTGT 1 chr1:95273790-95273870 ( 24) TGACCTGT 1 chr10:32791008-32791088 ( 22) TGACCTTA 1 chr6:84302634-84302714 ( 10) TGACCTTG 1 chr9:95871622-95871702 ( 73) TGACCTTG 1 chr1:246859883-246859963 ( 48) TGACCTTG 1 chr10:72453527-72453607 ( 19) TGACCTTG 1 chr7:129485569-129485649 ( 63) TGACCTTG 1 chr11:129973412-12997349 ( 37) TGACCTTA 1 chr4:81384816-81384896 ( 37) TGACCTTA 1 chr6:20454553-20454633 ( 3) TGACCTTA 1 chr1:176660968-176661048 ( 61) TGACCTTG 1 chr6:15970901-15970981 ( 63) TGACCTAT 1 chr1:18458715-18458795 ( 47) TGACCTAT 1 chr6:105483299-105483379 ( 20) TGACCTAT 1 chr9:90171869-90171949 ( 36) TGACCTTC 1 chr1:92783539-92783619 ( 42) TGACCTCA 1 chr1:154469520-154469600 ( 44) TGACCTTC 1 chr20:44399895-44399975 ( 30) TGCCCTTT 1 chr2:201232024-201232104 ( 59) TGACCTCG 1 chr7:137628119-137628199 ( 27) TGCCCTTT 1 chr1:110632366-110632446 ( 43) TGCCCTTT 1 chr17:47819830-47819910 ( 33) TCACCTTT 1 chr4:2846238-2846318 ( 34) TCACCTTT 1 chr18:30812130-30812210 ( 6) TCACCTTT 1 chr1:2203546-2203626 ( 59) TGCCCTCT 1 chr6:26475506-26475586 ( 23) TGACCTCC 1 chr1:28481501-28481581 ( 41) TGACCTCC 1 chr4:48625575-48625655 ( 52) TGACCTCC 1 chr1:201636791-201636871 ( 45) TCACCTCT 1 chr19:59069500-59069580 ( 31) TCACCTCT 1 chr10:97832593-97832673 ( 45) TCACCTCT 1 chr1:32338553-32338633 ( 25) TGACCCGT 1 chr1:185210429-185210509 ( 41) TGGCCTTT 1 chr2:72317537-72317617 ( 26) TGGCCTTT 1 chr2:29229733-29229813 ( 42) TGGCCTTT 1 chr8:100649743-100649823 ( 26) TAACCTTT 1 chr2:175901423-175901503 ( 44) TAACCTTT 1 chr11:94877680-94877760 ( 46) TGACCCTG 1 chr8:42000318-42000398 ( 37) TGACCCTG 1 chr6:105402526-105402606 ( 35) TAACCTCT 1 chr16:11243029-11243109 ( 35) TGACCCCA 1 chr1:228974330-228974410 ( 66) TGCCCCTT 1 chr19:46377191-46377271 ( 22) TGACCCCA 1 chr3:14294420-14294500 ( 38) TGACCCCA 1 chr8:20484950-20485030 ( 51) TGACCCCA 1 chr2:169963495-169963575 ( 49) TGACCCCA 1 chr1:211869039-211869119 ( 34) TGACCCTC 1 chr4:185736699-185736779 ( 40) TGACCTGG 1 chr7:135734023-135734103 ( 32) TGCCCCCT 1 chr9:139082270-139082350 ( 54) TCACCCCT 1 chr1:48221235-48221315 ( 3) TCACCTGT 1 chr14:105485792-10548587 ( 14) TGACCTAA 1 chr11:15601721-15601801 ( 52) TGGCCTGT 1 chr12:33136454-33136534 ( 40) TAACCCCT 1 chr9:124861713-124861793 ( 5) TGCCCTAT 1 chr2:64246990-64247070 ( 10) TGCCCTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACCTYT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.47348 E= 1.5e-111 -1364 -1364 -1364 197 -300 -202 191 -1364 186 -202 -295 -1364 -1364 198 -1364 -1364 -1364 198 -1364 -1364 -1364 -37 -1364 165 -268 41 -178 112 -154 -221 -163 161 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACCTYT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 128 E= 1.5e-111 0.000000 0.000000 0.000000 1.000000 0.031250 0.062500 0.906250 0.000000 0.906250 0.062500 0.031250 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.195312 0.000000 0.804688 0.039062 0.335938 0.070312 0.554688 0.085938 0.054688 0.078125 0.781250 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACCTYT MEME-2 regular expression -------------------------------------------------------------------------------- TGACCT[TC]T -------------------------------------------------------------------------------- Time 8.35 secs. ******************************************************************************** ******************************************************************************** MOTIF MAGATAAG MEME-3 width = 8 sites = 50 llr = 387 E-value = 3.9e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif MAGATAAG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 37:a1aa1 pos.-specific C 5:::1::2 probability G 2:a:2::7 matrix T :3::7::: bits 2.1 ** ** 1.8 ** ** 1.6 ** ** 1.4 ** ** Relative 1.2 ** ** Entropy 1.0 *** ** (11.2 bits) 0.8 *** *** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAGATAAG consensus AT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAGATAAG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:72987352-72987432 73 1.47e-05 AGGGTCACTA CAGATAAG chr6:143195951-143196031 63 1.47e-05 ctttggttta cagataag gaagctaggc chr7:133568902-133568982 54 1.47e-05 ccagagccag cagataag acatgacgtt chr11:47961665-47961745 14 1.47e-05 tttcatttta cagataag gaaaaatgag chr7:91481881-91481961 54 2.92e-05 actagtgtac aagataag cttcctgaga chr10:32241065-32241145 18 2.92e-05 gacgacttga aagataag tgtgcagttt chr6:37368016-37368096 55 2.92e-05 ttggtcaagt aagataag atatttaaaa chr17:54987726-54987806 62 2.92e-05 AACAGTGGCC AAGATAAG GTGTGGGCCA chr18:53331248-53331328 57 2.92e-05 TGGTTTCATA AAGATAAG CGCTCGGATA chr2:169963495-169963575 15 2.92e-05 TATTGCGGGA AAGATAAG AGAGTTCAGT chr11:15601721-15601801 66 4.43e-05 ctgtgtgaac ctgataag tcacttc chr1:110632366-110632446 18 4.43e-05 TCGGCTACTC CTGATAAG GAGACTGGAA chr2:187749450-187749530 26 4.43e-05 TGGTGAGGAT CTGATAAG CTTTATTCTA chr8:123772616-123772696 50 4.43e-05 TCAACCTGAA CTGATAAG CCCCAGTGAA chr10:32478492-32478572 20 4.43e-05 AAAGTTCCAT CTGATAAG TCTCCATATT chr21:36842860-36842940 41 4.43e-05 TGGAGGTCAT CTGATAAG CATGGGTCAC chr9:111895168-111895248 51 5.83e-05 ccctgGAGTA GAGATAAG AATGACACAC chr19:19009548-19009628 27 5.83e-05 TTTTCCCTGG GAGATAAG CCCAGGCCAG chr3:193316097-193316177 54 5.83e-05 gaggtcaaga gagataag gggagattag chr1:211869039-211869119 56 5.83e-05 AGCTGTCTGT GAGATAAG AGTAGTGATA chr10:33260664-33260744 1 8.70e-05 . cagagaag aaccacagag chr5:150505884-150505964 30 8.70e-05 AAGGTGCAAG CAGAGAAG CTGTGGTCAA chr10:72453527-72453607 51 1.02e-04 GTGGTCATCC CAGATAAC TCTCTCCAGC chr10:97832593-97832673 33 1.02e-04 ATTTGTCTGG CAGATAAC CTTTTCACCT chr3:183706122-183706202 13 1.30e-04 CAGACTCAGG AAGAGAAG CGGGGCTGAG chr17:14276544-14276624 58 1.30e-04 GGTCAGAGGC CAGAAAAG CAAACCGAGA chr6:26219225-26219305 13 1.30e-04 AGGCCCTATA AAGAGAAG TGATCTGTAA chr8:11799850-11799930 65 1.60e-04 AACGTTAGTG GTGATAAG GGCCGGAT chr16:69499323-69499403 14 1.60e-04 TGCATTTGTA AAGATAAC AGAGTGGTGG chr17:47819830-47819910 8 2.04e-04 CAGTTAG AAGAAAAG GAAGTGGTGT chr7:12952814-12952894 44 2.04e-04 ACTATGGGAG AAGAAAAG CACTGATGAA chr6:149450738-149450818 71 2.04e-04 TGCAGGGGAA CTGAGAAG AG chr16:11243029-11243109 70 2.19e-04 TGGGGATGAG CTGATAAC AGG chr6:14728264-14728344 71 2.19e-04 AGCTGTGCTG CTGATAAC CC chr1:180940012-180940092 18 2.47e-04 GAACGCAGTT CAGACAAG GAAGAGGAAG chr4:140524946-140525026 65 2.47e-04 CTGTGGTCTG CAGACAAG ACCTCACC chrX:118611840-118611920 23 2.91e-04 CCAAAGGTCA AAGATAAA TCCGTCCTGC chr17:57635567-57635647 42 2.91e-04 ttccaaccat aagataaa cccctccccg chr4:48625575-48625655 2 2.91e-04 A CTgaaaag cagcctagta chr1:182328917-182328997 65 2.91e-04 ATAGGGGCAG ATGAGAAG TTTAGTTT chr14:52351175-52351255 51 2.91e-04 ggtcacacag ctgaaaag tgacagaatc chr1:95273790-95273870 2 2.91e-04 A AAGATAAA CAGAGGCTGC chr19:10197307-10197387 52 3.06e-04 TCAGAGGCCA GAGATAAC CTGGCCGCCC chr2:158795268-158795348 42 3.21e-04 TAGTTATCCA ATGATAAC TGAGAAAAGC chr16:75163825-75163905 31 3.64e-04 ggcaacttga aagacaag tgtgtggttt chr11:62687540-62687620 48 3.64e-04 GGTCAGAGGG CAGAGAAC TCTCATCTGA chr15:29360322-29360402 64 3.94e-04 GCTTGAGCCT CTGATAAA GTCACGCGA chr6:32208665-32208745 60 4.66e-04 atcactggag gtgagaag gtcaaaaggt chr11:12889249-12889329 63 4.66e-04 ACTAGCTAGT GAGATAAA CTCGCTACAG chr19:19745175-19745255 28 4.66e-04 GTTCAGAGTT CAGAAAAC ACAGGTCAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAGATAAG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:72987352-72987432 1.5e-05 72_[+3] chr6:143195951-143196031 1.5e-05 62_[+3]_10 chr7:133568902-133568982 1.5e-05 53_[+3]_19 chr11:47961665-47961745 1.5e-05 13_[+3]_59 chr7:91481881-91481961 2.9e-05 53_[+3]_19 chr10:32241065-32241145 2.9e-05 17_[+3]_55 chr6:37368016-37368096 2.9e-05 54_[+3]_18 chr17:54987726-54987806 2.9e-05 61_[+3]_11 chr18:53331248-53331328 2.9e-05 56_[+3]_16 chr2:169963495-169963575 2.9e-05 14_[+3]_58 chr11:15601721-15601801 4.4e-05 65_[+3]_7 chr1:110632366-110632446 4.4e-05 17_[+3]_55 chr2:187749450-187749530 4.4e-05 25_[+3]_47 chr8:123772616-123772696 4.4e-05 49_[+3]_23 chr10:32478492-32478572 4.4e-05 19_[+3]_53 chr21:36842860-36842940 4.4e-05 40_[+3]_32 chr9:111895168-111895248 5.8e-05 50_[+3]_22 chr19:19009548-19009628 5.8e-05 26_[+3]_46 chr3:193316097-193316177 5.8e-05 53_[+3]_19 chr1:211869039-211869119 5.8e-05 55_[+3]_17 chr10:33260664-33260744 8.7e-05 [+3]_72 chr5:150505884-150505964 8.7e-05 29_[+3]_43 chr10:72453527-72453607 0.0001 50_[+3]_22 chr10:97832593-97832673 0.0001 32_[+3]_40 chr3:183706122-183706202 0.00013 12_[+3]_60 chr17:14276544-14276624 0.00013 57_[+3]_15 chr6:26219225-26219305 0.00013 12_[+3]_60 chr8:11799850-11799930 0.00016 64_[+3]_8 chr16:69499323-69499403 0.00016 13_[+3]_59 chr17:47819830-47819910 0.0002 7_[+3]_65 chr7:12952814-12952894 0.0002 43_[+3]_29 chr6:149450738-149450818 0.0002 70_[+3]_2 chr16:11243029-11243109 0.00022 69_[+3]_3 chr6:14728264-14728344 0.00022 70_[+3]_2 chr1:180940012-180940092 0.00025 17_[+3]_55 chr4:140524946-140525026 0.00025 64_[+3]_8 chrX:118611840-118611920 0.00029 22_[+3]_50 chr17:57635567-57635647 0.00029 41_[+3]_31 chr4:48625575-48625655 0.00029 1_[+3]_71 chr1:182328917-182328997 0.00029 64_[+3]_8 chr14:52351175-52351255 0.00029 50_[+3]_22 chr1:95273790-95273870 0.00029 1_[+3]_71 chr19:10197307-10197387 0.00031 51_[+3]_21 chr2:158795268-158795348 0.00032 41_[+3]_31 chr16:75163825-75163905 0.00036 30_[+3]_42 chr11:62687540-62687620 0.00036 47_[+3]_25 chr15:29360322-29360402 0.00039 63_[+3]_9 chr6:32208665-32208745 0.00047 59_[+3]_13 chr11:12889249-12889329 0.00047 62_[+3]_10 chr19:19745175-19745255 0.00047 27_[+3]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAGATAAG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MAGATAAG width=8 seqs=50 chr7:72987352-72987432 ( 73) CAGATAAG 1 chr6:143195951-143196031 ( 63) CAGATAAG 1 chr7:133568902-133568982 ( 54) CAGATAAG 1 chr11:47961665-47961745 ( 14) CAGATAAG 1 chr7:91481881-91481961 ( 54) AAGATAAG 1 chr10:32241065-32241145 ( 18) AAGATAAG 1 chr6:37368016-37368096 ( 55) AAGATAAG 1 chr17:54987726-54987806 ( 62) AAGATAAG 1 chr18:53331248-53331328 ( 57) AAGATAAG 1 chr2:169963495-169963575 ( 15) AAGATAAG 1 chr11:15601721-15601801 ( 66) CTGATAAG 1 chr1:110632366-110632446 ( 18) CTGATAAG 1 chr2:187749450-187749530 ( 26) CTGATAAG 1 chr8:123772616-123772696 ( 50) CTGATAAG 1 chr10:32478492-32478572 ( 20) CTGATAAG 1 chr21:36842860-36842940 ( 41) CTGATAAG 1 chr9:111895168-111895248 ( 51) GAGATAAG 1 chr19:19009548-19009628 ( 27) GAGATAAG 1 chr3:193316097-193316177 ( 54) GAGATAAG 1 chr1:211869039-211869119 ( 56) GAGATAAG 1 chr10:33260664-33260744 ( 1) CAGAGAAG 1 chr5:150505884-150505964 ( 30) CAGAGAAG 1 chr10:72453527-72453607 ( 51) CAGATAAC 1 chr10:97832593-97832673 ( 33) CAGATAAC 1 chr3:183706122-183706202 ( 13) AAGAGAAG 1 chr17:14276544-14276624 ( 58) CAGAAAAG 1 chr6:26219225-26219305 ( 13) AAGAGAAG 1 chr8:11799850-11799930 ( 65) GTGATAAG 1 chr16:69499323-69499403 ( 14) AAGATAAC 1 chr17:47819830-47819910 ( 8) AAGAAAAG 1 chr7:12952814-12952894 ( 44) AAGAAAAG 1 chr6:149450738-149450818 ( 71) CTGAGAAG 1 chr16:11243029-11243109 ( 70) CTGATAAC 1 chr6:14728264-14728344 ( 71) CTGATAAC 1 chr1:180940012-180940092 ( 18) CAGACAAG 1 chr4:140524946-140525026 ( 65) CAGACAAG 1 chrX:118611840-118611920 ( 23) AAGATAAA 1 chr17:57635567-57635647 ( 42) AAGATAAA 1 chr4:48625575-48625655 ( 2) CTGAAAAG 1 chr1:182328917-182328997 ( 65) ATGAGAAG 1 chr14:52351175-52351255 ( 51) CTGAAAAG 1 chr1:95273790-95273870 ( 2) AAGATAAA 1 chr19:10197307-10197387 ( 52) GAGATAAC 1 chr2:158795268-158795348 ( 42) ATGATAAC 1 chr16:75163825-75163905 ( 31) AAGACAAG 1 chr11:62687540-62687620 ( 48) CAGAGAAC 1 chr15:29360322-29360402 ( 64) CTGATAAA 1 chr6:32208665-32208745 ( 60) GTGAGAAG 1 chr11:12889249-12889329 ( 63) GAGATAAA 1 chr19:19745175-19745255 ( 28) CAGAAAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAGATAAG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1187 E= 3.9e-004 44 98 -59 -1229 144 -1229 -1229 32 -1229 -1229 205 -1229 200 -1229 -1229 -1229 -106 -207 -59 137 200 -1229 -1229 -1229 200 -1229 -1229 -1229 -132 -49 158 -1229 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAGATAAG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 50 E= 3.9e-004 0.340000 0.500000 0.160000 0.000000 0.680000 0.000000 0.000000 0.320000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.120000 0.060000 0.160000 0.660000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.100000 0.180000 0.720000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAGATAAG MEME-3 regular expression -------------------------------------------------------------------------------- [CA][AT]GATAAG -------------------------------------------------------------------------------- Time 11.70 secs. ******************************************************************************** ******************************************************************************** MOTIF BTTATCWG MEME-4 width = 8 sites = 41 llr = 332 E-value = 1.9e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif BTTATCWG MEME-4 Description -------------------------------------------------------------------------------- Simplified A 1::a::5: pos.-specific C 4::::a:2 probability G 2::::::6 matrix T 2aa:a:52 bits 2.1 ***** 1.8 ***** 1.6 ***** 1.4 ***** Relative 1.2 ***** Entropy 1.0 ****** (11.7 bits) 0.8 ****** 0.6 ******* 0.4 ******* 0.2 ******** 0.0 -------- Multilevel CTTATCTG consensus T AT sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTTATCWG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr8:19179724-19179804 32 1.66e-05 GCCAGAGGTG CTTATCTG TGCTGCAGAC chr2:29229733-29229813 3 1.66e-05 GC CTTATCTG TGCCTCTCAT chr1:28481501-28481581 20 3.27e-05 cggaaataag CTTATCAG Atggcccttg chr8:27180400-27180480 26 3.27e-05 tttcagttta cttatcag cccaccccac chr17:28067078-28067158 39 3.27e-05 CTCTGAACTC CTTATCAG TCACCTTTGG chr6:149450738-149450818 19 3.27e-05 AGGAGATTGT CTTATCAG CACCTAACAT chr4:81384816-81384896 11 3.27e-05 tggtaccagt cttatcag attcgggtcc chr20:36825074-36825154 51 3.27e-05 ACCTCTGGGG CTTATCAG CCTGGCCCCT chr3:127314357-127314437 27 3.27e-05 GCTCCTAGTC CTTATCAG ATGACCTCTG chr8:38135796-38135876 58 6.53e-05 AACCACTGCA GTTATCTG CTCCACAGTG chr17:16391900-16391980 7 6.53e-05 agagag gttatctg ctgggcccaa chr19:46914871-46914951 51 6.53e-05 CTTCCCTGTG GTTATCTG TGCCCTGTGA chr9:90171869-90171949 5 9.71e-05 ATGT GTTATCAG GAACCTTGGC chr5:156786080-156786160 21 9.71e-05 AGACTCCTGG GTTATCAG GGCATCGCTG chr6:126269752-126269832 33 9.71e-05 taaaactgct tttatcag cttttccaat chr17:75385617-75385697 30 9.71e-05 GCGACAGCCA TTTatcag ggagtctttg chr5:147777961-147778041 15 9.71e-05 ACGCAATACT TTTATCAG TGTATGTGAC chr4:2846238-2846318 11 9.71e-05 ATCGTGGAAC TTTATCAG CGATGGGGCT chr7:137628119-137628199 71 9.71e-05 CCAGACAGGC TTTATCAG AA chr1:231330889-231330969 68 9.71e-05 tgacctgtag gttatcaG ATGGG chr19:19009548-19009628 11 1.15e-04 GAAACCCAGT CTTATCTT TTCCCTGGGA chr7:103815431-103815511 21 1.15e-04 caatggggca cttatctt tcaagtcgcc chr6:15970901-15970981 32 1.15e-04 CCTGCACAGG CTTATCTT CCACAAGTAT chr11:62235372-62235452 35 1.49e-04 ttcctgaagc cttatctc aggtcagaca chr17:37027845-37027925 16 1.49e-04 TATTGGACAC CTTATCTC TCCCCTCCCC chr20:35502110-35502190 3 1.49e-04 tc cttatctc tagtccgagg chr8:42000318-42000398 51 1.49e-04 CCTGTGATTG CTTATCAT CCCCACAATG chr17:8080537-8080617 14 1.49e-04 CCAAGAAGCT CTTATCAT CGGCGACCTC chr1:23428163-23428243 32 1.49e-04 TAGGAGGTCA CTTATCTC TGACCTTTTG chr11:120959272-12095935 29 1.83e-04 GAATGCAGTT ATTATCTG ATTGCATTTG chr6:51778233-51778313 71 1.83e-04 TTTTCAAGGC ATTATCTG AA chr1:110946538-110946618 5 1.83e-04 ACCC ATTATCTG ATTCTAGACA chr4:48625575-48625655 25 1.99e-04 tagtacagag attatcag tagccagagg chr16:69499323-69499403 40 2.33e-04 GGGGTCAAAG TTTATCTT GTGTTTAGAT chr20:44399895-44399975 8 2.33e-04 CTTTCAC TTTATCTT TTAGAATGCC chr22:43659319-43659399 4 2.33e-04 ATG TTTATCTT CCTGGTGATT chr18:43246625-43246705 61 2.33e-04 AAGTAAAGAT GTTATCTT ACTGTGCCTC chr13:60275591-60275671 40 3.01e-04 caagtgtgtc tttatctc tctgtattcc chr15:27480493-27480573 48 3.01e-04 GATTGCCAGG GTTATCTC TCAGTGACTC chr18:10081626-10081706 40 3.01e-04 GACAGCTGGC TTTATCTC TACTGCACAG chr5:172305050-172305130 65 3.34e-04 GTCAGAAAGG GTTATCAC GGATGGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTTATCWG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:19179724-19179804 1.7e-05 31_[+4]_41 chr2:29229733-29229813 1.7e-05 2_[+4]_70 chr1:28481501-28481581 3.3e-05 19_[+4]_53 chr8:27180400-27180480 3.3e-05 25_[+4]_47 chr17:28067078-28067158 3.3e-05 38_[+4]_34 chr6:149450738-149450818 3.3e-05 18_[+4]_54 chr4:81384816-81384896 3.3e-05 10_[+4]_62 chr20:36825074-36825154 3.3e-05 50_[+4]_22 chr3:127314357-127314437 3.3e-05 26_[+4]_46 chr8:38135796-38135876 6.5e-05 57_[+4]_15 chr17:16391900-16391980 6.5e-05 6_[+4]_66 chr19:46914871-46914951 6.5e-05 50_[+4]_22 chr9:90171869-90171949 9.7e-05 4_[+4]_68 chr5:156786080-156786160 9.7e-05 20_[+4]_52 chr6:126269752-126269832 9.7e-05 32_[+4]_40 chr17:75385617-75385697 9.7e-05 29_[+4]_43 chr5:147777961-147778041 9.7e-05 14_[+4]_58 chr4:2846238-2846318 9.7e-05 10_[+4]_62 chr7:137628119-137628199 9.7e-05 70_[+4]_2 chr1:231330889-231330969 9.7e-05 67_[+4]_5 chr19:19009548-19009628 0.00011 10_[+4]_62 chr7:103815431-103815511 0.00011 20_[+4]_52 chr6:15970901-15970981 0.00011 31_[+4]_41 chr11:62235372-62235452 0.00015 34_[+4]_38 chr17:37027845-37027925 0.00015 15_[+4]_57 chr20:35502110-35502190 0.00015 2_[+4]_70 chr8:42000318-42000398 0.00015 50_[+4]_22 chr17:8080537-8080617 0.00015 13_[+4]_59 chr1:23428163-23428243 0.00015 31_[+4]_41 chr11:120959272-12095935 0.00018 28_[+4]_44 chr6:51778233-51778313 0.00018 70_[+4]_2 chr1:110946538-110946618 0.00018 4_[+4]_68 chr4:48625575-48625655 0.0002 24_[+4]_48 chr16:69499323-69499403 0.00023 39_[+4]_33 chr20:44399895-44399975 0.00023 7_[+4]_65 chr22:43659319-43659399 0.00023 3_[+4]_69 chr18:43246625-43246705 0.00023 60_[+4]_12 chr13:60275591-60275671 0.0003 39_[+4]_33 chr15:27480493-27480573 0.0003 47_[+4]_25 chr18:10081626-10081706 0.0003 39_[+4]_33 chr5:172305050-172305130 0.00033 64_[+4]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTTATCWG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BTTATCWG width=8 seqs=41 chr8:19179724-19179804 ( 32) CTTATCTG 1 chr2:29229733-29229813 ( 3) CTTATCTG 1 chr1:28481501-28481581 ( 20) CTTATCAG 1 chr8:27180400-27180480 ( 26) CTTATCAG 1 chr17:28067078-28067158 ( 39) CTTATCAG 1 chr6:149450738-149450818 ( 19) CTTATCAG 1 chr4:81384816-81384896 ( 11) CTTATCAG 1 chr20:36825074-36825154 ( 51) CTTATCAG 1 chr3:127314357-127314437 ( 27) CTTATCAG 1 chr8:38135796-38135876 ( 58) GTTATCTG 1 chr17:16391900-16391980 ( 7) GTTATCTG 1 chr19:46914871-46914951 ( 51) GTTATCTG 1 chr9:90171869-90171949 ( 5) GTTATCAG 1 chr5:156786080-156786160 ( 21) GTTATCAG 1 chr6:126269752-126269832 ( 33) TTTATCAG 1 chr17:75385617-75385697 ( 30) TTTATCAG 1 chr5:147777961-147778041 ( 15) TTTATCAG 1 chr4:2846238-2846318 ( 11) TTTATCAG 1 chr7:137628119-137628199 ( 71) TTTATCAG 1 chr1:231330889-231330969 ( 68) GTTATCAG 1 chr19:19009548-19009628 ( 11) CTTATCTT 1 chr7:103815431-103815511 ( 21) CTTATCTT 1 chr6:15970901-15970981 ( 32) CTTATCTT 1 chr11:62235372-62235452 ( 35) CTTATCTC 1 chr17:37027845-37027925 ( 16) CTTATCTC 1 chr20:35502110-35502190 ( 3) CTTATCTC 1 chr8:42000318-42000398 ( 51) CTTATCAT 1 chr17:8080537-8080617 ( 14) CTTATCAT 1 chr1:23428163-23428243 ( 32) CTTATCTC 1 chr11:120959272-12095935 ( 29) ATTATCTG 1 chr6:51778233-51778313 ( 71) ATTATCTG 1 chr1:110946538-110946618 ( 5) ATTATCTG 1 chr4:48625575-48625655 ( 25) ATTATCAG 1 chr16:69499323-69499403 ( 40) TTTATCTT 1 chr20:44399895-44399975 ( 8) TTTATCTT 1 chr22:43659319-43659399 ( 4) TTTATCTT 1 chr18:43246625-43246705 ( 61) GTTATCTT 1 chr13:60275591-60275671 ( 40) TTTATCTC 1 chr15:27480493-27480573 ( 48) GTTATCTC 1 chr18:10081626-10081706 ( 40) TTTATCTC 1 chr5:172305050-172305130 ( 65) GTTATCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTTATCWG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.76163 E= 1.9e-003 -136 80 -14 -7 -1200 -1200 -1200 197 -1200 -1200 -1200 197 200 -1200 -1200 -1200 -1200 -1200 -1200 197 -1200 198 -1200 -1200 89 -1200 -1200 107 -1200 -37 128 -22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTTATCWG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 41 E= 1.9e-003 0.097561 0.439024 0.219512 0.243902 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.463415 0.000000 0.000000 0.536585 0.000000 0.195122 0.585366 0.219512 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTTATCWG MEME-4 regular expression -------------------------------------------------------------------------------- [CTG]TTATC[TA][GT] -------------------------------------------------------------------------------- Time 14.97 secs. ******************************************************************************** ******************************************************************************** MOTIF GAGGTTAA MEME-5 width = 8 sites = 11 llr = 111 E-value = 4.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGGTTAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a:3::aa pos.-specific C :::::2:: probability G a:a7:::: matrix T ::::a8:: bits 2.1 *** * ** 1.8 *** * ** 1.6 *** * ** 1.4 *** * ** Relative 1.2 ******** Entropy 1.0 ******** (14.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAGGTTAA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGGTTAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:221163925-221164005 33 1.43e-05 ctcaggctga gaggttaa gtgactcatt chr3:57969699-57969779 70 1.43e-05 ggggcacagg gaggttaa atc chr1:231330889-231330969 31 1.43e-05 cctttcccag gaggttaa tccagaagcc chr6:126109099-126109179 11 1.43e-05 taaagcaact gaggttaa gtagtttacc chr14:52351175-52351255 20 1.43e-05 gtggttccca gaggttaa gtaatgtgct chr8:125488626-125488706 24 1.43e-05 cagggtcata gaggttaa gtgttttgct chr6:105483299-105483379 64 2.92e-05 CTGAGGGCAG GAGATTAA GGCAGTTTA chr12:65587067-65587147 1 2.92e-05 . gagattaa gtgtgcggtt chr1:183914699-183914779 23 2.92e-05 AACACGTCTG GAGATTAA CAAGTCAAAG chr3:193316097-193316177 44 4.34e-05 gagagttggg gaggtcaa gagagataag chr7:112348476-112348556 19 4.34e-05 ACAAAGGTCA GAGGTCAA TTCAGGAAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGGTTAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:221163925-221164005 1.4e-05 32_[+5]_40 chr3:57969699-57969779 1.4e-05 69_[+5]_3 chr1:231330889-231330969 1.4e-05 30_[+5]_42 chr6:126109099-126109179 1.4e-05 10_[+5]_62 chr14:52351175-52351255 1.4e-05 19_[+5]_53 chr8:125488626-125488706 1.4e-05 23_[+5]_49 chr6:105483299-105483379 2.9e-05 63_[+5]_9 chr12:65587067-65587147 2.9e-05 [+5]_72 chr1:183914699-183914779 2.9e-05 22_[+5]_50 chr3:193316097-193316177 4.3e-05 43_[+5]_29 chr7:112348476-112348556 4.3e-05 18_[+5]_54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGGTTAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGGTTAA width=8 seqs=11 chr1:221163925-221164005 ( 33) GAGGTTAA 1 chr3:57969699-57969779 ( 70) GAGGTTAA 1 chr1:231330889-231330969 ( 31) GAGGTTAA 1 chr6:126109099-126109179 ( 11) GAGGTTAA 1 chr14:52351175-52351255 ( 20) GAGGTTAA 1 chr8:125488626-125488706 ( 24) GAGGTTAA 1 chr6:105483299-105483379 ( 64) GAGATTAA 1 chr12:65587067-65587147 ( 1) GAGATTAA 1 chr1:183914699-183914779 ( 23) GAGATTAA 1 chr3:193316097-193316177 ( 44) GAGGTCAA 1 chr7:112348476-112348556 ( 19) GAGGTCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGGTTAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.0506 E= 4.6e+003 -1010 -1010 205 -1010 200 -1010 -1010 -1010 -1010 -1010 205 -1010 13 -1010 159 -1010 -1010 -1010 -1010 197 -1010 -48 -1010 168 200 -1010 -1010 -1010 200 -1010 -1010 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGGTTAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 4.6e+003 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.272727 0.000000 0.727273 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.181818 0.000000 0.818182 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGGTTAA MEME-5 regular expression -------------------------------------------------------------------------------- GAG[GA]TTAA -------------------------------------------------------------------------------- Time 18.18 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr21:36842860-36842940 1.54e-04 40_[+3(4.43e-05)]_32 chr2:99029513-99029593 7.02e-03 80 chr6:6665828-6665908 8.60e-02 80 chr1:23428163-23428243 8.89e-06 39_[+2(1.66e-05)]_33 chr9:116036879-116036959 1.55e-03 31_[+5(1.43e-05)]_41 chr9:75763487-75763567 1.48e-02 53_[+2(1.66e-05)]_19 chr10:50707523-50707603 1.81e-02 80 chr16:75729739-75729819 1.25e-01 80 chr1:211869039-211869119 1.53e-02 55_[+3(5.83e-05)]_17 chr1:95273790-95273870 1.71e-02 23_[+2(8.11e-05)]_49 chr12:122791118-12279119 9.29e-04 58_[+2(1.66e-05)]_14 chr7:106456252-106456332 5.48e-03 52_[+1(1.47e-05)]_20 chr8:125488626-125488706 4.88e-03 23_[+5(1.43e-05)]_49 chr10:97832593-97832673 1.27e-02 80 chr1:48221235-48221315 6.20e-03 80 chr3:127314357-127314437 2.61e-04 26_[+4(3.27e-05)]_1_[+2(3.29e-05)]_\ 37 chr18:30812130-30812210 7.10e-02 80 chr18:10081626-10081706 1.71e-03 21_[+2(1.66e-05)]_51 chr1:183914699-183914779 1.89e-03 22_[+5(2.92e-05)]_50 chr5:132759650-132759730 2.39e-02 80 chr7:112348476-112348556 1.12e-03 10_[+1(1.47e-05)]_[+5(4.34e-05)]_54 chr1:69945625-69945705 2.09e-02 55_[+2(3.29e-05)]_17 chr1:176660968-176661048 7.79e-03 52_[+1(8.66e-05)]_20 chr3:49195701-49195781 1.01e-02 49_[+1(1.47e-05)]_23 chr12:65587067-65587147 2.14e-04 [+5(2.92e-05)]_10_[+2(1.66e-05)]_54 chr7:99137109-99137189 5.40e-02 80 chr9:124861713-124861793 2.82e-02 80 chr21:47438688-47438768 8.24e-03 23_[+2(4.93e-05)]_49 chr19:10197307-10197387 1.06e-03 36_[+1(1.47e-05)]_36 chr17:3623426-3623506 9.95e-03 28_[+1(1.47e-05)]_44 chr14:52351175-52351255 7.82e-04 19_[+5(1.43e-05)]_53 chr7:116250325-116250405 1.12e-02 29_[+2(8.11e-05)]_43 chr6:126109099-126109179 3.61e-03 10_[+5(1.43e-05)]_10_[+1(7.16e-05)]_\ 44 chr10:32478492-32478572 1.04e-04 3_[+5(4.34e-05)]_8_[+3(4.43e-05)]_\ 53 chr11:62687540-62687620 1.71e-03 80 chr19:49713412-49713492 1.19e-02 27_[+2(1.66e-05)]_45 chr20:35513933-35514013 7.36e-03 7_[+1(1.47e-05)]_65 chr20:36825074-36825154 9.75e-04 38_[+2(3.29e-05)]_4_[+4(3.27e-05)]_\ 22 chr16:80022113-80022193 1.65e-03 35_[+2(1.66e-05)]_15_[+1(7.16e-05)]_\ 14 chr8:123772616-123772696 8.96e-04 34_[+1(7.16e-05)]_7_[+3(4.43e-05)]_\ 23 chr2:29229733-29229813 1.92e-02 2_[+4(1.66e-05)]_70 chr11:66601900-66601980 9.32e-04 59_[+2(3.29e-05)]_13 chr17:26075266-26075346 3.89e-02 51_[+2(3.29e-05)]_21 chr11:76316944-76317024 1.10e-02 44_[+1(1.47e-05)]_28 chr12:33136454-33136534 5.90e-02 80 chr12:74946107-74946187 1.14e-01 12_[+1(4.30e-05)]_60 chr3:193316097-193316177 1.70e-04 19_[+1(7.16e-05)]_16_[+5(4.34e-05)]_\ 2_[+3(5.83e-05)]_19 chr6:105483299-105483379 1.22e-04 41_[+1(7.16e-05)]_14_[+5(2.92e-05)]_\ 9 chr6:20454553-20454633 6.78e-02 80 chr5:93430937-93431017 1.09e-02 80 chr2:187749450-187749530 1.02e-05 25_[+3(4.43e-05)]_16_[+1(2.89e-05)]_\ 23 chr16:86962285-86962365 5.98e-02 48_[+2(1.66e-05)]_[+2(3.29e-05)]_16 chr4:81384816-81384896 5.17e-03 10_[+4(3.27e-05)]_62 chr16:53058041-53058121 4.29e-02 2_[+1(1.47e-05)]_70 chr11:47961665-47961745 1.46e-04 13_[+3(1.47e-05)]_34_[+1(7.16e-05)]_\ 17 chr1:61557395-61557475 6.83e-04 5_[+1(7.16e-05)]_13_[+1(8.66e-05)]_\ 21_[+2(1.66e-05)]_17 chr6:7115539-7115619 2.32e-02 31_[+2(4.93e-05)]_41 chr4:140524946-140525026 1.96e-03 43_[+1(1.47e-05)]_29 chr2:158795268-158795348 3.00e-04 17_[+1(1.47e-05)]_55 chr5:149730204-149730284 1.91e-02 21_[+2(1.66e-05)]_51 chr1:231330889-231330969 1.81e-05 30_[+5(1.43e-05)]_19_[+2(8.11e-05)]_\ 2_[+4(9.71e-05)]_5 chr21:17114515-17114595 9.87e-03 44_[+1(2.89e-05)]_28 chr2:72317537-72317617 8.88e-02 80 chr4:139359831-139359911 1.87e-03 49_[+2(3.29e-05)]_14_[+1(8.66e-05)]_\ 1 chr1:182328917-182328997 1.85e-02 80 chr11:129973412-12997349 1.72e-01 80 chr19:51294416-51294496 2.13e-01 20_[+2(4.93e-05)]_20_[+2(3.29e-05)]_\ 24 chr10:82026403-82026483 9.84e-03 69_[+1(7.16e-05)]_3 chr17:8080537-8080617 4.52e-03 32_[+2(1.66e-05)]_40 chr1:27933989-27934069 1.48e-02 35_[+1(1.47e-05)]_37 chr5:149501833-149501913 1.62e-02 21_[+1(1.47e-05)]_51 chr2:169963495-169963575 4.18e-03 14_[+3(2.92e-05)]_58 chr2:102667375-102667455 4.61e-03 30_[+1(1.47e-05)]_42 chr1:110632366-110632446 7.29e-03 17_[+3(4.43e-05)]_55 chr8:42000318-42000398 2.52e-02 80 chr21:40376102-40376182 3.33e-02 50_[+1(1.47e-05)]_22 chr1:110946538-110946618 6.87e-03 80 chr4:153503104-153503184 1.55e-02 80 chr7:121034988-121035068 2.46e-03 63_[+2(1.66e-05)]_9 chr19:11513001-11513081 8.83e-01 80 chr19:46914871-46914951 2.16e-03 50_[+4(6.53e-05)]_7_[+2(3.29e-05)]_\ 7 chr6:149450738-149450818 1.04e-04 18_[+4(3.27e-05)]_11_[+2(3.29e-05)]_\ 35 chr2:38861913-38861993 8.16e-03 47_[+2(1.66e-05)]_25 chr1:18458715-18458795 1.12e-03 56_[+1(7.16e-05)]_16 chr15:27480493-27480573 1.02e-01 80 chr17:71285146-71285226 3.81e-01 80 chr4:153449358-153449438 9.04e-02 80 chr4:144162250-144162330 1.78e-02 23_[+1(1.47e-05)]_49 chr12:56596294-56596374 7.33e-02 71_[+2(3.29e-05)]_1 chr18:43246625-43246705 4.48e-02 80 chr7:137628119-137628199 2.45e-03 70_[+4(9.71e-05)]_2 chr9:76026570-76026650 4.04e-03 52_[+1(2.89e-05)]_20 chr11:15601721-15601801 1.86e-04 25_[+1(8.66e-05)]_32_[+3(4.43e-05)]_\ 7 chr2:201232024-201232104 1.60e-02 80 chr19:1068230-1068310 1.67e-02 48_[+2(3.29e-05)]_6_[+2(6.55e-05)]_\ 10 chr10:79609027-79609107 4.01e-03 46_[+2(1.66e-05)]_26 chr5:78054100-78054180 1.46e-03 71_[+2(1.66e-05)]_1 chr17:28067078-28067158 4.96e-03 24_[+2(3.29e-05)]_6_[+4(3.27e-05)]_\ 34 chr3:196347204-196347284 6.43e-02 80 chr8:20484950-20485030 1.28e-03 59_[+5(4.34e-05)]_13 chr17:16391900-16391980 1.84e-04 6_[+4(6.53e-05)]_7_[+1(7.16e-05)]_\ 51 chr2:9843957-9844037 1.57e-02 25_[+2(1.66e-05)]_47 chr21:46507034-46507114 4.68e-01 80 chr2:175901423-175901503 3.70e-01 80 chr18:53331248-53331328 2.07e-03 56_[+3(2.92e-05)]_16 chr6:15970901-15970981 1.62e-03 80 chr22:43659319-43659399 4.14e-03 50_[+1(7.16e-05)]_22 chr15:60878102-60878182 6.90e-01 80 chr7:103815431-103815511 2.00e-04 4_[+1(1.47e-05)]_68 chr19:49136797-49136877 1.76e-02 50_[+1(1.47e-05)]_22 chr13:60275591-60275671 2.58e-03 80 chr6:143419342-143419422 6.29e-03 28_[+1(7.16e-05)]_44 chr7:133568902-133568982 6.23e-06 25_[+1(2.89e-05)]_20_[+3(1.47e-05)]_\ 19 chr6:26219225-26219305 2.24e-04 40_[+1(1.47e-05)]_32 chr7:129485569-129485649 1.13e-02 80 chr10:72453527-72453607 4.64e-05 10_[+1(2.89e-05)]_62 chr7:73144971-73145051 2.69e-03 62_[+1(2.89e-05)]_10 chr4:185736699-185736779 2.15e-04 14_[+1(2.89e-05)]_58 chr3:14294420-14294500 5.30e-03 80 chr10:9865393-9865473 1.45e-02 80 chr16:75163825-75163905 8.69e-05 47_[+2(1.66e-05)]_25 chr7:12952814-12952894 1.24e-03 67_[+1(2.89e-05)]_5 chr21:39665896-39665976 3.82e-02 22_[+1(1.47e-05)]_50 chr17:54987726-54987806 7.05e-04 16_[+2(3.29e-05)]_37_[+3(2.92e-05)]_\ 11 chr20:35502110-35502190 5.03e-03 80 chr5:172305050-172305130 6.24e-03 80 chr15:77359805-77359885 2.83e-02 15_[+2(4.93e-05)]_57 chr19:50865037-50865117 3.46e-04 8_[+1(2.89e-05)]_55_[+2(8.11e-05)]_\ 1 chr1:183905308-183905388 1.03e-02 32_[+1(1.47e-05)]_6_[+1(1.47e-05)]_\ 26 chr20:44399895-44399975 6.00e-02 80 chr13:91789205-91789285 3.77e-02 51_[+2(1.66e-05)]_21 chr1:246859883-246859963 1.28e-01 80 chr1:27675512-27675592 2.05e-01 3_[+2(3.29e-05)]_21_[+2(3.29e-05)]_\ 40 chr19:59069500-59069580 5.54e-01 80 chr9:37362575-37362655 5.84e-05 35_[+1(2.89e-05)]_1_[+2(3.29e-05)]_\ 28 chr1:8499678-8499758 1.69e-04 9_[+1(1.47e-05)]_1_[+2(4.93e-05)]_\ 54 chr3:186928869-186928949 2.56e-03 1_[+2(4.93e-05)]_71 chr4:48807101-48807181 6.25e-03 14_[+2(3.29e-05)]_58 chr1:144530334-144530414 1.73e-03 53_[+1(2.89e-05)]_19 chr6:112365089-112365169 4.06e-02 37_[+2(1.66e-05)]_35 chr15:65217682-65217762 7.08e-03 80 chr19:19745175-19745255 3.50e-03 42_[+1(1.47e-05)]_12_[+1(7.16e-05)]_\ 10 chr20:42087859-42087939 1.13e-01 15_[+2(4.93e-05)]_6_[+2(4.93e-05)]_\ 43 chr1:185210429-185210509 2.72e-01 80 chrX:47583228-47583308 2.48e-02 80 chr16:69499323-69499403 8.05e-04 80 chr19:50919365-50919445 2.18e-01 30_[+2(3.29e-05)]_7_[+2(6.55e-05)]_\ 27 chr6:37368016-37368096 1.13e-01 54_[+3(2.92e-05)]_18 chr1:159046726-159046806 4.97e-01 80 chr2:72025592-72025672 1.18e-01 8_[+1(7.16e-05)]_64 chr10:121484544-12148462 1.16e-02 12_[+1(1.47e-05)]_60 chr1:201636791-201636871 2.62e-02 80 chr4:2846238-2846318 2.52e-02 10_[+4(9.71e-05)]_62 chr8:19179724-19179804 6.60e-04 31_[+4(1.66e-05)]_22_[+2(4.93e-05)]_\ 11 chr17:7370343-7370423 7.24e-04 36_[+1(7.16e-05)]_[+2(3.29e-05)]_28 chr12:54688107-54688187 1.53e-02 28_[+1(4.30e-05)]_44 chr4:48625575-48625655 3.18e-04 80 chr10:32241065-32241145 4.65e-04 17_[+3(2.92e-05)]_9_[+2(1.66e-05)]_\ 38 chr15:58574655-58574735 4.05e-02 80 chr17:47819830-47819910 1.12e-03 38_[+4(6.53e-05)]_34 chr5:150505884-150505964 1.86e-04 29_[+3(8.70e-05)]_9_[+1(2.89e-05)]_\ 26 chr16:79985439-79985519 2.18e-02 28_[+2(1.66e-05)]_20_[+2(1.66e-05)]_\ 16 chr3:114546482-114546562 6.99e-04 10_[+1(1.47e-05)]_15_[+1(8.66e-05)]_\ 39 chr11:94877680-94877760 6.27e-02 80 chr9:139082270-139082350 2.53e-01 80 chr4:124365642-124365722 7.91e-02 44_[+2(1.66e-05)]_28 chr17:14276544-14276624 4.87e-04 44_[+1(7.16e-05)]_19_[+5(5.81e-05)]_\ 1 chr5:138485668-138485748 2.02e-01 49_[+2(3.29e-05)]_23 chr19:19009548-19009628 2.45e-06 26_[+3(5.83e-05)]_14_[+1(2.89e-05)]_\ 24 chr6:51778233-51778313 9.42e-03 41_[+1(4.30e-05)]_31 chr6:143195951-143196031 1.93e-03 62_[+3(1.47e-05)]_10 chr9:95871622-95871702 6.96e-04 45_[+5(4.34e-05)]_27 chr19:46377191-46377271 7.65e-02 80 chr17:57635567-57635647 7.00e-02 80 chrX:118611840-118611920 2.94e-04 14_[+1(1.47e-05)]_58 chr8:61523704-61523784 3.60e-01 80 chr9:130843460-130843540 1.67e-01 49_[+2(3.29e-05)]_23 chr1:180940012-180940092 1.92e-03 39_[+1(1.47e-05)]_33 chr11:134198457-13419853 1.73e-02 80 chr15:29360322-29360402 1.15e-02 80 chr8:11799850-11799930 2.69e-03 80 chr7:129425030-129425110 3.68e-03 37_[+1(1.47e-05)]_35 chr6:7106558-7106638 6.78e-03 56_[+1(1.47e-05)]_16 chr10:33260664-33260744 7.75e-04 [+3(8.70e-05)]_7_[+5(5.81e-05)]_57 chr8:27180400-27180480 6.26e-04 25_[+4(3.27e-05)]_11_[+2(1.66e-05)]_\ 28 chr5:147777961-147778041 7.48e-05 14_[+4(9.71e-05)]_58 chr6:36650164-36650244 2.04e-02 1_[+2(6.55e-05)]_71 chr18:12767162-12767242 9.26e-03 18_[+1(1.47e-05)]_54 chr4:154331171-154331251 1.40e-02 37_[+2(3.29e-05)]_35 chr17:37027845-37027925 7.73e-03 55_[+2(1.66e-05)]_17 chr19:10416112-10416192 5.40e-03 57_[+1(2.89e-05)]_6_[+1(7.16e-05)]_\ 1 chr4:53886098-53886178 6.94e-03 53_[+1(1.47e-05)]_19 chr11:62235372-62235452 7.72e-03 80 chr11:12889249-12889329 7.53e-04 80 chr1:154469520-154469600 1.92e-02 27_[+1(7.16e-05)]_45 chr18:55578181-55578261 8.95e-02 35_[+1(7.16e-05)]_37 chr1:45142324-45142404 3.55e-05 17_[+2(1.66e-05)]_31_[+1(2.89e-05)]_\ 16 chr15:70725631-70725711 3.68e-02 38_[+1(2.89e-05)]_34 chr13:28982412-28982492 1.59e-02 1_[+2(3.29e-05)]_71 chr1:28481501-28481581 4.42e-03 19_[+4(3.27e-05)]_53 chr12:27159906-27159986 7.67e-03 37_[+2(1.66e-05)]_35 chr4:38385334-38385414 5.81e-02 1_[+2(1.66e-05)]_71 chr12:117141171-11714125 4.09e-02 71_[+1(1.47e-05)]_1 chr3:45108073-45108153 5.78e-02 69_[+2(1.66e-05)]_3 chr6:26475506-26475586 1.07e-01 80 chr9:111895168-111895248 8.63e-04 12_[+2(4.93e-05)]_16_[+2(6.55e-05)]_\ 6_[+3(5.83e-05)]_22 chr6:105402526-105402606 1.25e-01 80 chr3:118960464-118960544 1.64e-01 80 chr3:43799299-43799379 1.72e-02 44_[+1(1.47e-05)]_28 chr3:57969699-57969779 7.69e-03 69_[+5(1.43e-05)]_3 chr19:41828002-41828082 6.18e-01 80 chr7:107204962-107205042 7.49e-02 39_[+2(1.66e-05)]_33 chr12:31910158-31910238 1.19e-02 56_[+2(3.29e-05)]_16 chr1:221163925-221164005 1.55e-04 32_[+5(1.43e-05)]_10_[+1(7.16e-05)]_\ 22 chr11:64027148-64027228 2.20e-01 21_[+2(8.11e-05)]_51 chr12:124205873-12420595 2.85e-01 80 chr9:33165821-33165901 4.70e-03 55_[+1(2.89e-05)]_17 chr17:75385617-75385697 4.13e-04 29_[+4(9.71e-05)]_25_[+1(1.47e-05)]_\ 10 chr7:135734023-135734103 1.60e-03 80 chr6:135439427-135439507 4.40e-01 80 chr6:32208665-32208745 3.18e-03 71_[+1(1.47e-05)]_1 chr8:38135796-38135876 2.09e-03 23_[+2(1.66e-05)]_26_[+4(6.53e-05)]_\ 15 chr1:92783539-92783619 2.67e-01 80 chr6:14728264-14728344 4.95e-03 80 chr11:129830246-12983032 3.44e-02 44_[+1(1.47e-05)]_28 chr8:100649743-100649823 1.82e-01 80 chr22:24921513-24921593 9.02e-03 29_[+1(2.89e-05)]_43 chr6:126269752-126269832 5.47e-04 32_[+4(9.71e-05)]_40 chr1:228974330-228974410 1.55e-02 21_[+1(7.16e-05)]_51 chr11:120959272-12095935 1.14e-02 44_[+2(1.66e-05)]_[+2(1.66e-05)]_20 chr16:11243029-11243109 5.83e-03 80 chr2:64246990-64247070 9.53e-04 25_[+1(1.47e-05)]_47 chr6:84302634-84302714 7.37e-06 30_[+3(1.47e-05)]_42 chr1:32338553-32338633 4.15e-03 7_[+1(7.16e-05)]_65 chr14:105485792-10548587 5.82e-01 80 chr5:156786080-156786160 5.29e-02 20_[+4(9.71e-05)]_52 chr3:36996385-36996465 5.56e-02 29_[+2(4.93e-05)]_43 chr16:56389998-56390078 4.79e-02 62_[+2(1.66e-05)]_10 chr9:90171869-90171949 1.53e-02 4_[+4(9.71e-05)]_68 chr9:35731545-35731625 9.38e-02 23_[+2(4.93e-05)]_49 chr7:91481881-91481961 1.05e-03 31_[+1(1.47e-05)]_14_[+3(2.92e-05)]_\ 19 chr10:32791008-32791088 2.98e-02 80 chrX:129088951-129089031 1.48e-02 3_[+2(6.55e-05)]_69 chr7:72987352-72987432 1.10e-03 61_[+1(4.30e-05)]_3_[+3(1.47e-05)] chr5:55213966-55214046 1.28e-02 54_[+2(1.66e-05)]_18 chr16:70669394-70669474 1.20e-02 39_[+1(2.89e-05)]_33 chr9:38195875-38195955 1.92e-04 31_[+1(1.47e-05)]_41 chr16:30198575-30198655 4.74e-01 80 chr3:183706122-183706202 2.73e-02 80 chr1:2203546-2203626 2.97e-03 6_[+1(1.47e-05)]_66 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n07.farnam.hpc.yale.internal ********************************************************************************