******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/NR2C2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr11:64765782-64765862 1.0000 80 chr15:63413880-63413960 1.0000 80 chr12:56401099-56401179 1.0000 80 chr16:27214781-27214861 1.0000 80 chr22:35653374-35653454 1.0000 80 chr19:15543598-15543678 1.0000 80 chr19:13228942-13229022 1.0000 80 chr17:80376455-80376535 1.0000 80 chr1:53480524-53480604 1.0000 80 chr15:31195989-31196069 1.0000 80 chr19:11513082-11513162 1.0000 80 chr17:34842348-34842428 1.0000 80 chr1:27675449-27675529 1.0000 80 chr11:45939728-45939808 1.0000 80 chrX:48455810-48455890 1.0000 80 chr12:48551258-48551338 1.0000 80 chr2:61244734-61244814 1.0000 80 chr1:178062770-178062850 1.0000 80 chr16:12897780-12897860 1.0000 80 chr17:41869109-41869189 1.0000 80 chr7:1015155-1015235 1.0000 80 chr7:44788298-44788378 1.0000 80 chr3:39149086-39149166 1.0000 80 chr16:9531118-9531198 1.0000 80 chr1:11862810-11862890 1.0000 80 chr20:18118411-18118491 1.0000 80 chr17:58213112-58213192 1.0000 80 chr17:1933347-1933427 1.0000 80 chr9:36258446-36258526 1.0000 80 chr16:68279064-68279144 1.0000 80 chr9:139839149-139839229 1.0000 80 chr9:136890491-136890571 1.0000 80 chr1:12289990-12290070 1.0000 80 chr5:53813453-53813533 1.0000 80 chr9:134378300-134378380 1.0000 80 chr4:123844193-123844273 1.0000 80 chr19:48606782-48606862 1.0000 80 chr8:105601496-105601576 1.0000 80 chr6:32098166-32098246 1.0000 80 chr1:156721654-156721734 1.0000 80 chr19:6393172-6393252 1.0000 80 chr2:39103068-39103148 1.0000 80 chr5:143550193-143550273 1.0000 80 chr20:16710574-16710654 1.0000 80 chr16:2255426-2255506 1.0000 80 chr11:46615603-46615683 1.0000 80 chr1:151162650-151162730 1.0000 80 chr15:41408635-41408715 1.0000 80 chr7:139477895-139477975 1.0000 80 chr12:118810842-11881092 1.0000 80 chr4:6988843-6988923 1.0000 80 chr11:65382743-65382823 1.0000 80 chr14:66974557-66974637 1.0000 80 chr3:48481504-48481584 1.0000 80 chr20:4042759-4042839 1.0000 80 chr8:145653916-145653996 1.0000 80 chr1:10534918-10534998 1.0000 80 chr11:67236800-67236880 1.0000 80 chrX:54466709-54466789 1.0000 80 chr12:89919893-89919973 1.0000 80 chr14:31889910-31889990 1.0000 80 chr12:25403854-25403934 1.0000 80 chr19:49713396-49713476 1.0000 80 chr4:668029-668109 1.0000 80 chr6:42185583-42185663 1.0000 80 chr22:47158747-47158827 1.0000 80 chr10:103347982-10334806 1.0000 80 chr15:64648386-64648466 1.0000 80 chr13:113344118-11334419 1.0000 80 chr19:1905758-1905838 1.0000 80 chr19:10416145-10416225 1.0000 80 chr10:104180725-10418080 1.0000 80 chr8:30013817-30013897 1.0000 80 chr18:54318813-54318893 1.0000 80 chr12:2113702-2113782 1.0000 80 chr8:142366736-142366816 1.0000 80 chr6:693098-693178 1.0000 80 chr1:171711186-171711266 1.0000 80 chr19:51963860-51963940 1.0000 80 chr19:965289-965369 1.0000 80 chr3:157827794-157827874 1.0000 80 chr2:74699768-74699848 1.0000 80 chr19:2328584-2328664 1.0000 80 chr4:47916774-47916854 1.0000 80 chr19:5358359-5358439 1.0000 80 chr7:144533080-144533160 1.0000 80 chr11:32605283-32605363 1.0000 80 chr11:118889036-11888911 1.0000 80 chr12:69080689-69080769 1.0000 80 chr11:118401849-11840192 1.0000 80 chr18:22006550-22006630 1.0000 80 chr10:7860375-7860455 1.0000 80 chr22:31365367-31365447 1.0000 80 chr11:118868811-11886889 1.0000 80 chr7:129710113-129710193 1.0000 80 chr2:27994555-27994635 1.0000 80 chr7:99036421-99036501 1.0000 80 chr3:12705648-12705728 1.0000 80 chr2:219433452-219433532 1.0000 80 chr2:214016617-214016697 1.0000 80 chr21:46221712-46221792 1.0000 80 chr20:60962048-60962128 1.0000 80 chr17:80606341-80606421 1.0000 80 chr9:136203029-136203109 1.0000 80 chr5:892924-893004 1.0000 80 chr1:46713315-46713395 1.0000 80 chr17:38136973-38137053 1.0000 80 chr7:123197889-123197969 1.0000 80 chr7:158649130-158649210 1.0000 80 chr16:23652679-23652759 1.0000 80 chr17:55927533-55927613 1.0000 80 chr8:27381864-27381944 1.0000 80 chr8:144816235-144816315 1.0000 80 chr2:39351547-39351627 1.0000 80 chr2:74710182-74710262 1.0000 80 chr1:222886555-222886635 1.0000 80 chr3:15419823-15419903 1.0000 80 chr20:32398874-32398954 1.0000 80 chr12:96252673-96252753 1.0000 80 chr17:61920528-61920608 1.0000 80 chr17:34979860-34979940 1.0000 80 chr1:246859912-246859992 1.0000 80 chr19:37064195-37064275 1.0000 80 chr3:37217829-37217909 1.0000 80 chr1:45452283-45452363 1.0000 80 chr11:71639492-71639572 1.0000 80 chr3:141747469-141747549 1.0000 80 chr2:152266311-152266391 1.0000 80 chr22:46516086-46516166 1.0000 80 chr14:24701514-24701594 1.0000 80 chr16:88371903-88371983 1.0000 80 chr19:8139613-8139693 1.0000 80 chr3:15140627-15140707 1.0000 80 chr7:91875223-91875303 1.0000 80 chr18:20147954-20148034 1.0000 80 chr16:47007580-47007660 1.0000 80 chr11:94706724-94706804 1.0000 80 chr9:72374945-72375025 1.0000 80 chr20:35917993-35918073 1.0000 80 chr5:93954293-93954373 1.0000 80 chr6:3259140-3259220 1.0000 80 chr3:142720334-142720414 1.0000 80 chr11:14541907-14541987 1.0000 80 chr1:36929946-36930026 1.0000 80 chr1:33282960-33283040 1.0000 80 chr9:133373822-133373902 1.0000 80 chr3:183602648-183602728 1.0000 80 chr1:213224550-213224630 1.0000 80 chr9:125675607-125675687 1.0000 80 chr17:42700903-42700983 1.0000 80 chr20:33103404-33103484 1.0000 80 chr19:14682856-14682936 1.0000 80 chr13:46038961-46039041 1.0000 80 chr16:14013989-14014069 1.0000 80 chr17:37769357-37769437 1.0000 80 chr17:26662476-26662556 1.0000 80 chr1:28415084-28415164 1.0000 80 chr10:63584929-63585009 1.0000 80 chr22:22093736-22093816 1.0000 80 chr3:100119957-100120037 1.0000 80 chr20:54967617-54967697 1.0000 80 chr21:27107331-27107411 1.0000 80 chr5:131516834-131516914 1.0000 80 chr12:82752199-82752279 1.0000 80 chr16:67700651-67700731 1.0000 80 chr19:1935667-1935747 1.0000 80 chr10:73537140-73537220 1.0000 80 chr2:209130793-209130873 1.0000 80 chr10:27443304-27443384 1.0000 80 chr12:22697468-22697548 1.0000 80 chr6:116892463-116892543 1.0000 80 chr16:19729529-19729609 1.0000 80 chr6:31927030-31927110 1.0000 80 chr8:56987097-56987177 1.0000 80 chr7:102937816-102937896 1.0000 80 chr14:24912109-24912189 1.0000 80 chr21:30446087-30446167 1.0000 80 chr17:80709870-80709950 1.0000 80 chr12:49961880-49961960 1.0000 80 chr12:108155094-10815517 1.0000 80 chr3:47517417-47517497 1.0000 80 chr1:109633285-109633365 1.0000 80 chr2:70314495-70314575 1.0000 80 chr20:36662087-36662167 1.0000 80 chr6:13615505-13615585 1.0000 80 chr21:30375059-30375139 1.0000 80 chr5:94890725-94890805 1.0000 80 chr8:42698460-42698540 1.0000 80 chr2:109065613-109065693 1.0000 80 chr12:70637137-70637217 1.0000 80 chr5:176981583-176981663 1.0000 80 chr10:102747255-10274733 1.0000 80 chr8:21867699-21867779 1.0000 80 chr9:140473355-140473435 1.0000 80 chr3:121468754-121468834 1.0000 80 chr1:114447845-114447925 1.0000 80 chr6:37321794-37321874 1.0000 80 chr4:8703471-8703551 1.0000 80 chr8:80942445-80942525 1.0000 80 chr2:153573938-153574018 1.0000 80 chr2:203776406-203776486 1.0000 80 chr22:22064223-22064303 1.0000 80 chr3:9994074-9994154 1.0000 80 chr11:62495877-62495957 1.0000 80 chr9:127177686-127177766 1.0000 80 chr1:44820882-44820962 1.0000 80 chr16:58426278-58426358 1.0000 80 chr1:165738081-165738161 1.0000 80 chr10:131934631-13193471 1.0000 80 chr12:133136424-13313650 1.0000 80 chr11:71823698-71823778 1.0000 80 chr19:58898538-58898618 1.0000 80 chr9:140513069-140513149 1.0000 80 chr16:30392369-30392449 1.0000 80 chr5:78908248-78908328 1.0000 80 chr9:132816122-132816202 1.0000 80 chr16:30933891-30933971 1.0000 80 chr1:18458688-18458768 1.0000 80 chr12:56223394-56223474 1.0000 80 chr14:75593739-75593819 1.0000 80 chr20:34287264-34287344 1.0000 80 chr19:31841745-31841825 1.0000 80 chr1:229761857-229761937 1.0000 80 chr12:102513855-10251393 1.0000 80 chr17:7218697-7218777 1.0000 80 chr4:83956141-83956221 1.0000 80 chr19:55687570-55687650 1.0000 80 chr19:49136764-49136844 1.0000 80 chr10:72475748-72475828 1.0000 80 chr3:119395928-119396008 1.0000 80 chr17:62340767-62340847 1.0000 80 chr19:5791164-5791244 1.0000 80 chr1:114472184-114472264 1.0000 80 chrX:153119108-153119188 1.0000 80 chr20:19997905-19997985 1.0000 80 chr14:75643324-75643404 1.0000 80 chr19:19745171-19745251 1.0000 80 chr2:44396837-44396917 1.0000 80 chr8:54934893-54934973 1.0000 80 chr6:33257344-33257424 1.0000 80 chr7:39663117-39663197 1.0000 80 chr19:15537473-15537553 1.0000 80 chr19:17420569-17420649 1.0000 80 chr6:96025647-96025727 1.0000 80 chr10:73345089-73345169 1.0000 80 chr7:99679348-99679428 1.0000 80 chr14:78174357-78174437 1.0000 80 chr12:57119098-57119178 1.0000 80 chr17:61904763-61904843 1.0000 80 chr13:41837672-41837752 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_NR2C2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/NR2C2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.184 C 0.313 G 0.311 T 0.192 Background letter frequencies (from file dataset with add-one prior applied): A 0.184 C 0.313 G 0.311 T 0.192 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTCCGGGK MEME-1 width = 8 sites = 44 llr = 408 E-value = 1.4e-028 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTCCGGGK MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::aa::1: probability G ::::aa83 matrix T aa:::::7 bits 2.4 ** 2.2 ** 2.0 ** 1.7 **** Relative 1.5 ****** Entropy 1.2 ****** * (13.4 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTCCGGGT consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCCGGGK MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr13:41837672-41837752 62 2.09e-05 GGTTCACTTC TTCCGGGT TAACGCACGC chr12:57119098-57119178 58 2.09e-05 TAGGATCCGA TTCCGGGT CAAGAGCTGC chr7:99679348-99679428 27 2.09e-05 CTCGTTTCGC TTCCGGGT CGGTTGTTCT chr6:33257344-33257424 24 2.09e-05 CCTTGTTTAC TTCCGGGT TTATTACTAC chr19:5791164-5791244 30 2.09e-05 CGGGAAGACC TTCCGGGT CACGCGTGTC chr12:102513855-10251393 46 2.09e-05 GTGGCTCTGC TTCCGGGT CGGAGGGCGA chr5:78908248-78908328 35 2.09e-05 CACGTCGGTC TTCCGGGT GTCTTTGACA chr9:127177686-127177766 35 2.09e-05 AAGAAAGCAG TTCCGGGT CGGAGGCGGG chr21:30375059-30375139 64 2.09e-05 GAGCTAGTGC TTCCGGGT CACCCCGGC chr6:13615505-13615585 46 2.09e-05 TTGTAGCTGC TTCCGGGT CAGAGGTCAG chr16:19729529-19729609 50 2.09e-05 TTCCGGCTTC TTCCGGGT CGCGGCCTTC chr21:27107331-27107411 59 2.09e-05 GGGTAAGTGC TTCCGGGT CCCCTGGCAC chr19:14682856-14682936 41 2.09e-05 CAGACACAGC TTCCGGGT CATTTAGGCA chr9:72374945-72375025 53 2.09e-05 cgccgAGCAC TTCCGGGT CAGCCAGTTG chr7:91875223-91875303 61 2.09e-05 GTGAAAGAGC TTCCGGGT CGGCGGCCGG chr14:24701514-24701594 62 2.09e-05 CCACTTCTAC TTCCGGGT CACTGTCTGG chr3:15419823-15419903 18 2.09e-05 aggcagtaac ttccgggt cgttgccatg chr2:74710182-74710262 20 2.09e-05 TACCTTTCAT TTCCGGGT CACTGTAGAT chr5:892924-893004 42 2.09e-05 GCCCGAGCGC TTCCGGGT CAGGAGGTGG chr18:22006550-22006630 63 2.09e-05 AGGGTTGTGG TTCCGGGT CGGGCCGCGC chr12:69080689-69080769 60 2.09e-05 GACAGACTGC TTCCGGGT CGAAGGGCTT chr2:39103068-39103148 41 2.09e-05 GCGTATTCGC TTCCGGGT GAGAGGTGCC chr14:78174357-78174437 53 5.46e-05 CGGAAATTTT TTCCGGGG CCGCGACCTC chr12:56223394-56223474 28 5.46e-05 CTACTTCCAC TTCCGGGG TCACCAGGGA chr1:165738081-165738161 50 5.46e-05 GCACTTCCGC TTCCGGGG CATAGCACCG chr9:140473355-140473435 25 5.46e-05 TCGCGACTCC TTCCGGGG TGCCGGGGCG chr2:70314495-70314575 63 5.46e-05 CAGCAAGCAC TTCCGGGG TCAGAGGGTA chr10:27443304-27443384 48 5.46e-05 TCAACAGTAC TTCCGGGG CAAGTGAGCG chr3:183602648-183602728 44 5.46e-05 GCGCAACTAC TTCCGGGG CGAAGGCAAC chr5:93954293-93954373 45 5.46e-05 GTACTATCGC TTCCGGGG CTGCCTAGCG chr20:35917993-35918073 67 5.46e-05 AGGGAACTAC TTCCGGGG GAGCGG chr21:46221712-46221792 57 5.46e-05 CCAGGAACTC TTCCGGGG CGTGGCGCGT chr11:118889036-11888911 67 5.46e-05 CTGTGAGTAC TTCCGGGG CAAAAG chr6:42185583-42185663 33 5.46e-05 TCAGGATTGC TTCCGGGG TTACAGCGGC chr5:143550193-143550273 27 5.46e-05 AAAGAACGGC TTCCGGGG CACGCCCGCT chr8:144816235-144816315 65 7.56e-05 GACTCGGAAG TTCCGGCT CAGTCGCT chr12:2113702-2113782 13 7.56e-05 CCGGGAGGCC TTCCGGCT CCAGTCACCC chr1:10534918-10534998 13 7.56e-05 ACAGGCTCTG TTCCGGCT ACCTTAGTCT chr10:102747255-10274733 12 8.85e-05 ACCTCGAGGC TTCCGGTT CCGGGACGAC chr12:49961880-49961960 71 8.85e-05 TGGCAATCTC TTCCGGTT CG chr1:114472184-114472264 2 1.47e-04 G TTCCGGCG AGGCGGGGCC chr9:132816122-132816202 20 1.47e-04 CCCCGGGCCC TTCCGGCG GCTGCGCCCT chr11:62495877-62495957 38 1.47e-04 TCCCTTCTAC TTCCAGGT CGGGGGGGGG chr10:103347982-10334806 36 1.47e-04 CCAGAATAGC TTCCGAGT CAGCCGGAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCCGGGK MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr13:41837672-41837752 2.1e-05 61_[+1]_11 chr12:57119098-57119178 2.1e-05 57_[+1]_15 chr7:99679348-99679428 2.1e-05 26_[+1]_46 chr6:33257344-33257424 2.1e-05 23_[+1]_49 chr19:5791164-5791244 2.1e-05 29_[+1]_43 chr12:102513855-10251393 2.1e-05 45_[+1]_27 chr5:78908248-78908328 2.1e-05 34_[+1]_38 chr9:127177686-127177766 2.1e-05 34_[+1]_38 chr21:30375059-30375139 2.1e-05 63_[+1]_9 chr6:13615505-13615585 2.1e-05 45_[+1]_27 chr16:19729529-19729609 2.1e-05 49_[+1]_23 chr21:27107331-27107411 2.1e-05 58_[+1]_14 chr19:14682856-14682936 2.1e-05 40_[+1]_32 chr9:72374945-72375025 2.1e-05 52_[+1]_20 chr7:91875223-91875303 2.1e-05 60_[+1]_12 chr14:24701514-24701594 2.1e-05 61_[+1]_11 chr3:15419823-15419903 2.1e-05 17_[+1]_55 chr2:74710182-74710262 2.1e-05 19_[+1]_53 chr5:892924-893004 2.1e-05 41_[+1]_31 chr18:22006550-22006630 2.1e-05 62_[+1]_10 chr12:69080689-69080769 2.1e-05 59_[+1]_13 chr2:39103068-39103148 2.1e-05 40_[+1]_32 chr14:78174357-78174437 5.5e-05 52_[+1]_20 chr12:56223394-56223474 5.5e-05 27_[+1]_45 chr1:165738081-165738161 5.5e-05 49_[+1]_23 chr9:140473355-140473435 5.5e-05 24_[+1]_48 chr2:70314495-70314575 5.5e-05 62_[+1]_10 chr10:27443304-27443384 5.5e-05 47_[+1]_25 chr3:183602648-183602728 5.5e-05 43_[+1]_29 chr5:93954293-93954373 5.5e-05 44_[+1]_28 chr20:35917993-35918073 5.5e-05 66_[+1]_6 chr21:46221712-46221792 5.5e-05 56_[+1]_16 chr11:118889036-11888911 5.5e-05 66_[+1]_6 chr6:42185583-42185663 5.5e-05 32_[+1]_40 chr5:143550193-143550273 5.5e-05 26_[+1]_46 chr8:144816235-144816315 7.6e-05 64_[+1]_8 chr12:2113702-2113782 7.6e-05 12_[+1]_60 chr1:10534918-10534998 7.6e-05 12_[+1]_60 chr10:102747255-10274733 8.9e-05 11_[+1]_61 chr12:49961880-49961960 8.9e-05 70_[+1]_2 chr1:114472184-114472264 0.00015 1_[+1]_71 chr9:132816122-132816202 0.00015 19_[+1]_53 chr11:62495877-62495957 0.00015 37_[+1]_35 chr10:103347982-10334806 0.00015 35_[+1]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCCGGGK MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTCCGGGK width=8 seqs=44 chr13:41837672-41837752 ( 62) TTCCGGGT 1 chr12:57119098-57119178 ( 58) TTCCGGGT 1 chr7:99679348-99679428 ( 27) TTCCGGGT 1 chr6:33257344-33257424 ( 24) TTCCGGGT 1 chr19:5791164-5791244 ( 30) TTCCGGGT 1 chr12:102513855-10251393 ( 46) TTCCGGGT 1 chr5:78908248-78908328 ( 35) TTCCGGGT 1 chr9:127177686-127177766 ( 35) TTCCGGGT 1 chr21:30375059-30375139 ( 64) TTCCGGGT 1 chr6:13615505-13615585 ( 46) TTCCGGGT 1 chr16:19729529-19729609 ( 50) TTCCGGGT 1 chr21:27107331-27107411 ( 59) TTCCGGGT 1 chr19:14682856-14682936 ( 41) TTCCGGGT 1 chr9:72374945-72375025 ( 53) TTCCGGGT 1 chr7:91875223-91875303 ( 61) TTCCGGGT 1 chr14:24701514-24701594 ( 62) TTCCGGGT 1 chr3:15419823-15419903 ( 18) TTCCGGGT 1 chr2:74710182-74710262 ( 20) TTCCGGGT 1 chr5:892924-893004 ( 42) TTCCGGGT 1 chr18:22006550-22006630 ( 63) TTCCGGGT 1 chr12:69080689-69080769 ( 60) TTCCGGGT 1 chr2:39103068-39103148 ( 41) TTCCGGGT 1 chr14:78174357-78174437 ( 53) TTCCGGGG 1 chr12:56223394-56223474 ( 28) TTCCGGGG 1 chr1:165738081-165738161 ( 50) TTCCGGGG 1 chr9:140473355-140473435 ( 25) TTCCGGGG 1 chr2:70314495-70314575 ( 63) TTCCGGGG 1 chr10:27443304-27443384 ( 48) TTCCGGGG 1 chr3:183602648-183602728 ( 44) TTCCGGGG 1 chr5:93954293-93954373 ( 45) TTCCGGGG 1 chr20:35917993-35918073 ( 67) TTCCGGGG 1 chr21:46221712-46221792 ( 57) TTCCGGGG 1 chr11:118889036-11888911 ( 67) TTCCGGGG 1 chr6:42185583-42185663 ( 33) TTCCGGGG 1 chr5:143550193-143550273 ( 27) TTCCGGGG 1 chr8:144816235-144816315 ( 65) TTCCGGCT 1 chr12:2113702-2113782 ( 13) TTCCGGCT 1 chr1:10534918-10534998 ( 13) TTCCGGCT 1 chr10:102747255-10274733 ( 12) TTCCGGTT 1 chr12:49961880-49961960 ( 71) TTCCGGTT 1 chr1:114472184-114472264 ( 2) TTCCGGCG 1 chr9:132816122-132816202 ( 20) TTCCGGCG 1 chr11:62495877-62495957 ( 38) TTCCAGGT 1 chr10:103347982-10334806 ( 36) TTCCGAGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCCGGGK MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.72094 E= 1.4e-028 -1210 -1210 -1210 238 -1210 -1210 -1210 238 -1210 167 -1210 -1210 -1210 167 -1210 -1210 -301 -1210 165 -1210 -301 -1210 165 -1210 -1210 -146 143 -208 -1210 -1210 13 178 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCCGGGK MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 44 E= 1.4e-028 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.022727 0.000000 0.977273 0.000000 0.022727 0.000000 0.977273 0.000000 0.000000 0.113636 0.840909 0.045455 0.000000 0.000000 0.340909 0.659091 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCCGGGK MEME-1 regular expression -------------------------------------------------------------------------------- TTCCGGG[TG] -------------------------------------------------------------------------------- Time 5.06 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCGGAAG MEME-2 width = 8 sites = 45 llr = 390 E-value = 2.6e-018 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCGGAAG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1:1::aa2 pos.-specific C 7a9::::1 probability G 1::aa::8 matrix T :::::::: bits 2.4 ** 2.2 ** 2.0 ** 1.7 * **** Relative 1.5 * **** Entropy 1.2 ****** (12.5 bits) 1.0 ****** 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCCGGAAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGGAAG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:39663117-39663197 40 3.12e-05 TCCCCAGCGC CCCGGAAG TGATCTGTGG chr20:19997905-19997985 23 3.12e-05 CAACTCGTAG CCCGGAAG CAGTACCCCG chr20:34287264-34287344 2 3.12e-05 T CCCGGAAG TGCTGCCCGG chr19:58898538-58898618 50 3.12e-05 CCCGTGCTGA CCCGGAAG TTTTCTTCCC chr11:71823698-71823778 26 3.12e-05 CCGGCGGCGA CCCGGAAG CGCTTCACCC chr8:21867699-21867779 49 3.12e-05 GCGCTGCAGC CCCGGAAG TAATTTCGCG chr7:102937816-102937896 48 3.12e-05 AGGTCGCGAC CCCGGAAG CACATCCTTC chr10:27443304-27443384 17 3.12e-05 GACAATCCGC CCCGGAAG GCGAGGCGCT chr16:14013989-14014069 19 3.12e-05 TCGGCTGCGA CCCGGAAG AGCTTCCATG chr9:125675607-125675687 49 3.12e-05 CTCTAGGCGC CCCGGAAG GACATTCTGA chr1:213224550-213224630 15 3.12e-05 GATAGCCTGG CCCGGAAG CTTCTCTGCT chr11:94706724-94706804 37 3.12e-05 GCGCCTACGA CCCGGAAG CAAAATCCAA chr3:37217829-37217909 30 3.12e-05 GACCCACTCA CCCGGAAG CAGTTGTGGC chr8:144816235-144816315 40 3.12e-05 TGACCCTCGC CCCGGAAG TCGGGGTGAC chr20:60962048-60962128 47 3.12e-05 GGTGGCGTGA CCCGGAAG CGCTCGCCGA chr2:27994555-27994635 22 3.12e-05 CGGGCCGTGC CCCGGAAG CAGTTGTTGT chr18:22006550-22006630 21 3.12e-05 CGGCCCGCCA CCCGGAAG CAGATGCCGG chr11:32605283-32605363 52 3.12e-05 CTCAGGGTGA CCCGGAAG CAGTTGCGCC chr2:74699768-74699848 32 3.12e-05 TGACCTCCGC CCCGGAAG AACTCGTGCA chr20:16710574-16710654 1 3.12e-05 . CCCGGAAG CATCGATCGG chr19:6393172-6393252 44 3.12e-05 GGCCGCCTAA CCCGGAAG CGAAACCCTC chr4:123844193-123844273 27 3.12e-05 TGACTTCTGC CCCGGAAG TTTTTCTCTC chr12:48551258-48551338 32 3.12e-05 CAAGGCGTGA CCCGGAAG CAGAAGCTGT chr14:75593739-75593819 29 4.97e-05 TGCCCCCCGA CCCGGAAA CAGTTCTCTG chr14:24912109-24912189 7 4.97e-05 CGGCGA CCCGGAAA AACTTGTAAA chr5:93954293-93954373 25 4.97e-05 CTGACAACCA CCCGGAAA TGGTACTATC chr3:119395928-119396008 60 6.81e-05 gggcagaggC ACCGGAAG GCACAGGCCG chr1:28415084-28415164 66 6.81e-05 ATCGCTAGGA ACCGGAAG TAAGCGG chr3:15140627-15140707 56 6.81e-05 CGGCGACGAA ACCGGAAG ACAAGCTGGT chr4:668029-668109 26 6.81e-05 TGACCTCCGC ACCGGAAG CACAACCTGC chr2:209130793-209130873 6 1.17e-04 TTCTT CCAGGAAG GCTGAAGCGG chr10:103347982-10334806 46 1.17e-04 TTCCGAGTCA GCCGGAAG TGACCCTCTG chr16:68279064-68279144 37 1.17e-04 TCAGCGTGGT CCAGGAAG CAGGGGGTTG chr1:165738081-165738161 64 1.28e-04 GGGGCATAGC ACCGGAAA GGCTCGTAT chr19:37064195-37064275 3 1.28e-04 AC ACCGGAAA AGGAAGCAAA chr14:78174357-78174437 12 1.47e-04 TACCCTCTGA TCCGGAAG CAGATTCTCT chr17:26662476-26662556 43 1.47e-04 CCTTCCTGAC TCCGGAAG CACTTACAGC chr3:121468754-121468834 52 1.79e-04 GAGTAGGTGC CCCGGAAC AAGATCTGGG chr8:56987097-56987177 27 1.79e-04 TCCCACACGC CCCGGAAC AGGAAATATC chr19:14682856-14682936 8 1.79e-04 GCTCCTA CCCGGAAC CACTGACCCC chr1:33282960-33283040 44 2.08e-04 TCCGGCAGCG GCCGGAAA AAGTGAGGAG chr9:136203029-136203109 6 2.08e-04 CCTCC GCCGGAAA CCACCACACG chr10:63584929-63585009 6 2.48e-04 gcgta gcaggaag aagtgctgtg chr12:96252673-96252753 19 2.48e-04 AATCACAGAG GCAGGAAG GGCCGTGGTG chr5:892924-893004 12 2.48e-04 CGGGGCCGCG GCAGGAAG TGGCCCTGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGGAAG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:39663117-39663197 3.1e-05 39_[+2]_33 chr20:19997905-19997985 3.1e-05 22_[+2]_50 chr20:34287264-34287344 3.1e-05 1_[+2]_71 chr19:58898538-58898618 3.1e-05 49_[+2]_23 chr11:71823698-71823778 3.1e-05 25_[+2]_47 chr8:21867699-21867779 3.1e-05 48_[+2]_24 chr7:102937816-102937896 3.1e-05 47_[+2]_25 chr10:27443304-27443384 3.1e-05 16_[+2]_56 chr16:14013989-14014069 3.1e-05 18_[+2]_54 chr9:125675607-125675687 3.1e-05 48_[+2]_24 chr1:213224550-213224630 3.1e-05 14_[+2]_58 chr11:94706724-94706804 3.1e-05 36_[+2]_36 chr3:37217829-37217909 3.1e-05 29_[+2]_43 chr8:144816235-144816315 3.1e-05 39_[+2]_33 chr20:60962048-60962128 3.1e-05 46_[+2]_26 chr2:27994555-27994635 3.1e-05 21_[+2]_51 chr18:22006550-22006630 3.1e-05 20_[+2]_52 chr11:32605283-32605363 3.1e-05 51_[+2]_21 chr2:74699768-74699848 3.1e-05 31_[+2]_41 chr20:16710574-16710654 3.1e-05 [+2]_72 chr19:6393172-6393252 3.1e-05 43_[+2]_29 chr4:123844193-123844273 3.1e-05 26_[+2]_46 chr12:48551258-48551338 3.1e-05 31_[+2]_41 chr14:75593739-75593819 5e-05 28_[+2]_44 chr14:24912109-24912189 5e-05 6_[+2]_66 chr5:93954293-93954373 5e-05 24_[+2]_48 chr3:119395928-119396008 6.8e-05 59_[+2]_13 chr1:28415084-28415164 6.8e-05 65_[+2]_7 chr3:15140627-15140707 6.8e-05 55_[+2]_17 chr4:668029-668109 6.8e-05 25_[+2]_47 chr2:209130793-209130873 0.00012 5_[+2]_67 chr10:103347982-10334806 0.00012 45_[+2]_27 chr16:68279064-68279144 0.00012 36_[+2]_36 chr1:165738081-165738161 0.00013 63_[+2]_9 chr19:37064195-37064275 0.00013 2_[+2]_70 chr14:78174357-78174437 0.00015 11_[+2]_61 chr17:26662476-26662556 0.00015 42_[+2]_30 chr3:121468754-121468834 0.00018 51_[+2]_21 chr8:56987097-56987177 0.00018 26_[+2]_46 chr19:14682856-14682936 0.00018 7_[+2]_65 chr1:33282960-33283040 0.00021 43_[+2]_29 chr9:136203029-136203109 0.00021 5_[+2]_67 chr10:63584929-63585009 0.00025 5_[+2]_67 chr12:96252673-96252753 0.00025 18_[+2]_54 chr5:892924-893004 0.00025 11_[+2]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGGAAG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCGGAAG width=8 seqs=45 chr7:39663117-39663197 ( 40) CCCGGAAG 1 chr20:19997905-19997985 ( 23) CCCGGAAG 1 chr20:34287264-34287344 ( 2) CCCGGAAG 1 chr19:58898538-58898618 ( 50) CCCGGAAG 1 chr11:71823698-71823778 ( 26) CCCGGAAG 1 chr8:21867699-21867779 ( 49) CCCGGAAG 1 chr7:102937816-102937896 ( 48) CCCGGAAG 1 chr10:27443304-27443384 ( 17) CCCGGAAG 1 chr16:14013989-14014069 ( 19) CCCGGAAG 1 chr9:125675607-125675687 ( 49) CCCGGAAG 1 chr1:213224550-213224630 ( 15) CCCGGAAG 1 chr11:94706724-94706804 ( 37) CCCGGAAG 1 chr3:37217829-37217909 ( 30) CCCGGAAG 1 chr8:144816235-144816315 ( 40) CCCGGAAG 1 chr20:60962048-60962128 ( 47) CCCGGAAG 1 chr2:27994555-27994635 ( 22) CCCGGAAG 1 chr18:22006550-22006630 ( 21) CCCGGAAG 1 chr11:32605283-32605363 ( 52) CCCGGAAG 1 chr2:74699768-74699848 ( 32) CCCGGAAG 1 chr20:16710574-16710654 ( 1) CCCGGAAG 1 chr19:6393172-6393252 ( 44) CCCGGAAG 1 chr4:123844193-123844273 ( 27) CCCGGAAG 1 chr12:48551258-48551338 ( 32) CCCGGAAG 1 chr14:75593739-75593819 ( 29) CCCGGAAA 1 chr14:24912109-24912189 ( 7) CCCGGAAA 1 chr5:93954293-93954373 ( 25) CCCGGAAA 1 chr3:119395928-119396008 ( 60) ACCGGAAG 1 chr1:28415084-28415164 ( 66) ACCGGAAG 1 chr3:15140627-15140707 ( 56) ACCGGAAG 1 chr4:668029-668109 ( 26) ACCGGAAG 1 chr2:209130793-209130873 ( 6) CCAGGAAG 1 chr10:103347982-10334806 ( 46) GCCGGAAG 1 chr16:68279064-68279144 ( 37) CCAGGAAG 1 chr1:165738081-165738161 ( 64) ACCGGAAA 1 chr19:37064195-37064275 ( 3) ACCGGAAA 1 chr14:78174357-78174437 ( 12) TCCGGAAG 1 chr17:26662476-26662556 ( 43) TCCGGAAG 1 chr3:121468754-121468834 ( 52) CCCGGAAC 1 chr8:56987097-56987177 ( 27) CCCGGAAC 1 chr19:14682856-14682936 ( 8) CCCGGAAC 1 chr1:33282960-33283040 ( 44) GCCGGAAA 1 chr9:136203029-136203109 ( 6) GCCGGAAA 1 chr10:63584929-63585009 ( 6) GCAGGAAG 1 chr12:96252673-96252753 ( 19) GCAGGAAG 1 chr5:892924-893004 ( 12) GCAGGAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGGAAG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.04017 E= 2.6e-018 -46 114 -122 -211 -1214 167 -1214 -1214 -73 150 -1214 -1214 -1214 -1214 168 -1214 -1214 -1214 168 -1214 244 -1214 -1214 -1214 244 -1214 -1214 -1214 -24 -223 132 -1214 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGGAAG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 45 E= 2.6e-018 0.133333 0.688889 0.133333 0.044444 0.000000 1.000000 0.000000 0.000000 0.111111 0.888889 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.155556 0.066667 0.777778 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGGAAG MEME-2 regular expression -------------------------------------------------------------------------------- CCCGGAAG -------------------------------------------------------------------------------- Time 8.79 secs. ******************************************************************************** ******************************************************************************** MOTIF ATCGATYR MEME-3 width = 8 sites = 36 llr = 305 E-value = 1.6e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATCGATYR MEME-3 Description -------------------------------------------------------------------------------- Simplified A 8::1a:15 pos.-specific C 1:9:::3: probability G :1:9::15 matrix T :91::a5: bits 2.4 * 2.2 ** 2.0 * ** 1.7 * ** Relative 1.5 ** *** Entropy 1.2 ****** (12.2 bits) 1.0 ****** * 0.7 ****** * 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ATCGATTG consensus CA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCGATYR MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:203776406-203776486 40 4.29e-06 TTTAGGAGTC ATCGATTA GAAAAGGATA chr2:214016617-214016697 33 4.29e-06 GCGCTCGGCA ATCGATTA CAGGACAAGT chr19:48606782-48606862 56 4.29e-06 atgtgccaag atcgatta gtcatgtctg chr11:64765782-64765862 44 4.29e-06 ccaCAccatg atcgatta gtgatgcctg chr19:15537473-15537553 57 1.15e-05 gccactacca atcgattg aaatggcaca chr16:58426278-58426358 27 1.15e-05 TGCAGACTTG ATCGATTG CTTCTGCCTG chr11:118401849-11840192 1 1.15e-05 . ATCGATTG GCCCCGCCTG chr15:31195989-31196069 10 1.85e-05 GGAAAGGAG ATCGATCA CTCGAGCCTC chr16:27214781-27214861 4 1.85e-05 GGC ATCGATCA CTCGGCGCTC chr10:73537140-73537220 31 2.12e-05 cagttctgtg attgatta gtgatgtctg chr19:5358359-5358439 67 2.12e-05 gagttctgtt attgatta gtgatg chr12:22697468-22697548 2 3.71e-05 C ATCGATCG TTCGGCGCTC chr2:152266311-152266391 14 3.71e-05 aagggaGGCG ATCGATAA CTCCGGTGTG chr16:2255426-2255506 1 3.71e-05 . ATCGATAA CTCTACGCTC chr20:16710574-16710654 10 3.71e-05 CCCGGAAGC ATCGATCG GCTCTGTGCT chr17:1933347-1933427 45 3.71e-05 CCGATCGGCG ATCGATCG CAATGTCTGC chr9:133373822-133373902 23 4.16e-05 GCAATGGGTG ATTGATTG CTTCGGTCTG chr21:30446087-30446167 38 4.85e-05 GATCGGGTCG ATCGATAG GGCGGGCCCA chr20:54967617-54967697 18 4.85e-05 AGTGGGACCG ATCGATAG CGCAGCGGTC chr6:96025647-96025727 57 6.53e-05 CTGTAGCCCC CTCGATTA ACCTAGGCTG chr9:136203029-136203109 66 6.53e-05 AGCCCGCGCG CTCGATTA GCCAAGC chr10:104180725-10418080 57 6.53e-05 TGAGACGGCA CTCGATTA AATAGGTCTG chr19:965289-965369 56 6.96e-05 GACATTACTA ATTGATCA CTGTTTTTCC chr17:41869109-41869189 10 6.96e-05 acattacta attgatca cagcactctc chr12:2113702-2113782 69 9.80e-05 GGCCTCACTA ATCGATGG CCGC chr1:12289990-12290070 72 9.80e-05 GCGTCGGCCG CTCGATTG G chr9:136890491-136890571 4 9.80e-05 GCG ATCGATGG CTTGGGCTCG chr9:139839149-139839229 29 9.80e-05 GCCCCGAGGC ATCGATGG CCGAGGAAGG chr20:18118411-18118491 28 9.80e-05 ATGCTCGGCT CTCGATTG CTCACGCCTG chr19:8139613-8139693 42 1.42e-04 gacatcacta atcaatca cagcactctt chr20:4042759-4042839 16 1.42e-04 gacattatga atcaatca tggcagtctt chrX:48455810-48455890 44 1.42e-04 AAGGATGCCT ATCGATTC GCTCTGGGCT chr12:102513855-10251393 68 2.05e-04 GGGCGAGCGC AGCGATTG GCTCC chr7:129710113-129710193 25 2.13e-04 ACACTCGGTC TTCGATTG GCCCGCCTGG chr17:34842348-34842428 12 2.88e-04 ATAGATGCGC ATCGAGTG TATCGACGCT chr6:37321794-37321874 16 3.70e-04 CTGCTTTCGC AGCGATCG CGAGCGTGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCGATYR MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:203776406-203776486 4.3e-06 39_[+3]_33 chr2:214016617-214016697 4.3e-06 32_[+3]_40 chr19:48606782-48606862 4.3e-06 55_[+3]_17 chr11:64765782-64765862 4.3e-06 43_[+3]_29 chr19:15537473-15537553 1.2e-05 56_[+3]_16 chr16:58426278-58426358 1.2e-05 26_[+3]_46 chr11:118401849-11840192 1.2e-05 [+3]_72 chr15:31195989-31196069 1.9e-05 9_[+3]_63 chr16:27214781-27214861 1.9e-05 3_[+3]_69 chr10:73537140-73537220 2.1e-05 30_[+3]_42 chr19:5358359-5358439 2.1e-05 66_[+3]_6 chr12:22697468-22697548 3.7e-05 1_[+3]_71 chr2:152266311-152266391 3.7e-05 13_[+3]_59 chr16:2255426-2255506 3.7e-05 [+3]_72 chr20:16710574-16710654 3.7e-05 9_[+3]_63 chr17:1933347-1933427 3.7e-05 44_[+3]_28 chr9:133373822-133373902 4.2e-05 22_[+3]_50 chr21:30446087-30446167 4.9e-05 37_[+3]_35 chr20:54967617-54967697 4.9e-05 17_[+3]_55 chr6:96025647-96025727 6.5e-05 56_[+3]_16 chr9:136203029-136203109 6.5e-05 65_[+3]_7 chr10:104180725-10418080 6.5e-05 56_[+3]_16 chr19:965289-965369 7e-05 55_[+3]_17 chr17:41869109-41869189 7e-05 9_[+3]_63 chr12:2113702-2113782 9.8e-05 68_[+3]_4 chr1:12289990-12290070 9.8e-05 71_[+3]_1 chr9:136890491-136890571 9.8e-05 3_[+3]_69 chr9:139839149-139839229 9.8e-05 28_[+3]_44 chr20:18118411-18118491 9.8e-05 27_[+3]_45 chr19:8139613-8139693 0.00014 41_[+3]_31 chr20:4042759-4042839 0.00014 15_[+3]_57 chrX:48455810-48455890 0.00014 43_[+3]_29 chr12:102513855-10251393 0.00021 67_[+3]_5 chr7:129710113-129710193 0.00021 24_[+3]_48 chr17:34842348-34842428 0.00029 11_[+3]_61 chr6:37321794-37321874 0.00037 15_[+3]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCGATYR MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATCGATYR width=8 seqs=36 chr2:203776406-203776486 ( 40) ATCGATTA 1 chr2:214016617-214016697 ( 33) ATCGATTA 1 chr19:48606782-48606862 ( 56) ATCGATTA 1 chr11:64765782-64765862 ( 44) ATCGATTA 1 chr19:15537473-15537553 ( 57) ATCGATTG 1 chr16:58426278-58426358 ( 27) ATCGATTG 1 chr11:118401849-11840192 ( 1) ATCGATTG 1 chr15:31195989-31196069 ( 10) ATCGATCA 1 chr16:27214781-27214861 ( 4) ATCGATCA 1 chr10:73537140-73537220 ( 31) ATTGATTA 1 chr19:5358359-5358439 ( 67) ATTGATTA 1 chr12:22697468-22697548 ( 2) ATCGATCG 1 chr2:152266311-152266391 ( 14) ATCGATAA 1 chr16:2255426-2255506 ( 1) ATCGATAA 1 chr20:16710574-16710654 ( 10) ATCGATCG 1 chr17:1933347-1933427 ( 45) ATCGATCG 1 chr9:133373822-133373902 ( 23) ATTGATTG 1 chr21:30446087-30446167 ( 38) ATCGATAG 1 chr20:54967617-54967697 ( 18) ATCGATAG 1 chr6:96025647-96025727 ( 57) CTCGATTA 1 chr9:136203029-136203109 ( 66) CTCGATTA 1 chr10:104180725-10418080 ( 57) CTCGATTA 1 chr19:965289-965369 ( 56) ATTGATCA 1 chr17:41869109-41869189 ( 10) ATTGATCA 1 chr12:2113702-2113782 ( 69) ATCGATGG 1 chr1:12289990-12290070 ( 72) CTCGATTG 1 chr9:136890491-136890571 ( 4) ATCGATGG 1 chr9:139839149-139839229 ( 29) ATCGATGG 1 chr20:18118411-18118491 ( 28) CTCGATTG 1 chr19:8139613-8139693 ( 42) ATCAATCA 1 chr20:4042759-4042839 ( 16) ATCAATCA 1 chrX:48455810-48455890 ( 44) ATCGATTC 1 chr12:102513855-10251393 ( 68) AGCGATTG 1 chr7:129710113-129710193 ( 25) TTCGATTG 1 chr17:34842348-34842428 ( 12) ATCGAGTG 1 chr6:37321794-37321874 ( 16) AGCGATCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCGATYR MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.28309 E= 1.6e-005 218 -117 -1181 -278 -1181 -1181 -248 230 -1181 146 -1181 -46 -173 -1181 160 -1181 244 -1181 -1181 -1181 -1181 -1181 -348 234 -73 -17 -190 146 136 -349 68 -1181 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCGATYR MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 1.6e-005 0.833333 0.138889 0.000000 0.027778 0.000000 0.000000 0.055556 0.944444 0.000000 0.861111 0.000000 0.138889 0.055556 0.000000 0.944444 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.027778 0.972222 0.111111 0.277778 0.083333 0.527778 0.472222 0.027778 0.500000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCGATYR MEME-3 regular expression -------------------------------------------------------------------------------- ATCGAT[TC][GA] -------------------------------------------------------------------------------- Time 12.46 secs. ******************************************************************************** ******************************************************************************** MOTIF TYTGACCT MEME-4 width = 8 sites = 29 llr = 258 E-value = 2.3e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif TYTGACCT MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::1:a::: pos.-specific C 14:::aa2 probability G :1:a:::: matrix T 949::::8 bits 2.4 * 2.2 * 2.0 * 1.7 * **** Relative 1.5 * ****** Entropy 1.2 * ****** (12.9 bits) 1.0 * ****** 0.7 * ****** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCTGACCT consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTGACCT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr8:80942445-80942525 58 7.62e-06 ACCTCTGACC TTTGACCT CCCCTCCGCA chr2:109065613-109065693 24 7.62e-06 GAGCGCGACC TTTGACCT GCAGTAGAGC chr20:36662087-36662167 31 7.62e-06 GCCCTTGCCC TTTGACCT CGCTCTCGCG chr6:31927030-31927110 26 7.62e-06 ACCCCTGACT TTTGACCT TTCCCCGTAG chr1:246859912-246859992 17 7.62e-06 GAGCCTCACC TTTGACCT TGTCTCAGCA chr19:2328584-2328664 25 7.62e-06 CCCCGCGCCC TTTGACCT CCCCCACGCG chr19:49713396-49713476 49 7.62e-06 TCAAGTGACC TTTGACCT CTGGCCTTTG chr1:27675449-27675529 65 7.62e-06 CAATATGACC TTTGACCT CTTCCTCA chr14:75643324-75643404 29 2.00e-05 GTGACTCACC TCTGACCT TCTGATGCCG chr13:113344118-11334419 34 2.00e-05 CCCCGCGGcc tctgacct ctgccctctg chr3:48481504-48481584 41 2.00e-05 TCAGTTGACC TCTGACCT GTTAGTACCC chrX:153119108-153119188 15 3.98e-05 cactctgact tttgaccc ctcacctctt chr10:72475748-72475828 23 3.98e-05 CATTCTGACT TTTGACCC TTGACCTCTG chr16:47007580-47007660 33 3.98e-05 GGGGCTGAAC TTTGACCC AGCGCACGGT chr20:32398874-32398954 50 3.98e-05 CCACACGCCC TTTGACCC CAGCTACAGC chr19:17420569-17420649 36 9.67e-05 CCCACTCACC TGTGACCT TCGACCCCCG chr4:83956141-83956221 39 9.67e-05 TGGGCAGGCC TCAGACCT GAGGAGTGGA chr1:44820882-44820962 60 9.67e-05 CTCCGCGCAC TCTGACCC CGACCGACGC chr2:70314495-70314575 5 9.67e-05 ATCT TGTGACCT AAAAAAGACG chr11:71639492-71639572 11 9.67e-05 ACCTTCGCCT TCTGACCC CGAGAGCTAC chr7:123197889-123197969 7 9.67e-05 CAATTC TCAGACCT GCTCAATCGA chr11:118401849-11840192 56 9.67e-05 GCGGTGCTCA TCAGACCT GAGCAGTTGC chr19:11513082-11513162 43 9.67e-05 GGGTCAGGGG TCAGACCT CCAACATATC chr1:18458688-18458768 39 1.04e-04 CACACtgacc tatgacct atgacctatg chr8:21867699-21867779 23 1.29e-04 CCCCACCTGG CCTGACCT CCCCGACAGC chr5:131516834-131516914 26 1.29e-04 ATTCTCACCA CCTGACCT CTAGGAACAC chr17:37769357-37769437 27 1.29e-04 TCCCGTAACC TTTGACTT CTGGCCTCTG chr8:27381864-27381944 16 1.29e-04 GATTAATCTT CCTGACCT CTCTCTCTGT chr4:668029-668109 14 1.29e-04 CCATCTTGTC CCTGACCT CCGCACCGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTGACCT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:80942445-80942525 7.6e-06 57_[+4]_15 chr2:109065613-109065693 7.6e-06 23_[+4]_49 chr20:36662087-36662167 7.6e-06 30_[+4]_42 chr6:31927030-31927110 7.6e-06 25_[+4]_47 chr1:246859912-246859992 7.6e-06 16_[+4]_56 chr19:2328584-2328664 7.6e-06 24_[+4]_48 chr19:49713396-49713476 7.6e-06 48_[+4]_24 chr1:27675449-27675529 7.6e-06 64_[+4]_8 chr14:75643324-75643404 2e-05 28_[+4]_44 chr13:113344118-11334419 2e-05 33_[+4]_39 chr3:48481504-48481584 2e-05 40_[+4]_32 chrX:153119108-153119188 4e-05 14_[+4]_58 chr10:72475748-72475828 4e-05 22_[+4]_50 chr16:47007580-47007660 4e-05 32_[+4]_40 chr20:32398874-32398954 4e-05 49_[+4]_23 chr19:17420569-17420649 9.7e-05 35_[+4]_37 chr4:83956141-83956221 9.7e-05 38_[+4]_34 chr1:44820882-44820962 9.7e-05 59_[+4]_13 chr2:70314495-70314575 9.7e-05 4_[+4]_68 chr11:71639492-71639572 9.7e-05 10_[+4]_62 chr7:123197889-123197969 9.7e-05 6_[+4]_66 chr11:118401849-11840192 9.7e-05 55_[+4]_17 chr19:11513082-11513162 9.7e-05 42_[+4]_30 chr1:18458688-18458768 0.0001 38_[+4]_34 chr8:21867699-21867779 0.00013 22_[+4]_50 chr5:131516834-131516914 0.00013 25_[+4]_47 chr17:37769357-37769437 0.00013 26_[+4]_46 chr8:27381864-27381944 0.00013 15_[+4]_57 chr4:668029-668109 0.00013 13_[+4]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTGACCT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TYTGACCT width=8 seqs=29 chr8:80942445-80942525 ( 58) TTTGACCT 1 chr2:109065613-109065693 ( 24) TTTGACCT 1 chr20:36662087-36662167 ( 31) TTTGACCT 1 chr6:31927030-31927110 ( 26) TTTGACCT 1 chr1:246859912-246859992 ( 17) TTTGACCT 1 chr19:2328584-2328664 ( 25) TTTGACCT 1 chr19:49713396-49713476 ( 49) TTTGACCT 1 chr1:27675449-27675529 ( 65) TTTGACCT 1 chr14:75643324-75643404 ( 29) TCTGACCT 1 chr13:113344118-11334419 ( 34) TCTGACCT 1 chr3:48481504-48481584 ( 41) TCTGACCT 1 chrX:153119108-153119188 ( 15) TTTGACCC 1 chr10:72475748-72475828 ( 23) TTTGACCC 1 chr16:47007580-47007660 ( 33) TTTGACCC 1 chr20:32398874-32398954 ( 50) TTTGACCC 1 chr19:17420569-17420649 ( 36) TGTGACCT 1 chr4:83956141-83956221 ( 39) TCAGACCT 1 chr1:44820882-44820962 ( 60) TCTGACCC 1 chr2:70314495-70314575 ( 5) TGTGACCT 1 chr11:71639492-71639572 ( 11) TCTGACCC 1 chr7:123197889-123197969 ( 7) TCAGACCT 1 chr11:118401849-11840192 ( 56) TCAGACCT 1 chr19:11513082-11513162 ( 43) TCAGACCT 1 chr1:18458688-18458768 ( 39) TATGACCT 1 chr8:21867699-21867779 ( 23) CCTGACCT 1 chr5:131516834-131516914 ( 26) CCTGACCT 1 chr17:37769357-37769437 ( 27) TTTGACTT 1 chr8:27381864-27381944 ( 16) CCTGACCT 1 chr4:668029-668109 ( 14) CCTGACCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTGACCT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.5458 E= 2.3e-005 -1150 -118 -1150 217 -241 52 -217 123 -42 -1150 -1150 217 -1150 -1150 168 -1150 244 -1150 -1150 -1150 -1150 167 -1150 -1150 -1150 162 -1150 -247 -1150 -60 -1150 205 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTGACCT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 2.3e-005 0.000000 0.137931 0.000000 0.862069 0.034483 0.448276 0.068966 0.448276 0.137931 0.000000 0.000000 0.862069 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.965517 0.000000 0.034483 0.000000 0.206897 0.000000 0.793103 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTGACCT MEME-4 regular expression -------------------------------------------------------------------------------- T[CT]TGACC[TC] -------------------------------------------------------------------------------- Time 16.05 secs. ******************************************************************************** ******************************************************************************** MOTIF GTCARAGG MEME-5 width = 8 sites = 27 llr = 240 E-value = 7.6e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTCARAGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::a3a:: pos.-specific C ::8:::1: probability G a11:6:9a matrix T :91::::: bits 2.4 * * 2.2 * * 2.0 * * * 1.7 * * * * Relative 1.5 ** * * * Entropy 1.2 ** * *** (12.8 bits) 1.0 **** *** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTCAGAGG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCARAGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:19745171-19745251 51 3.03e-05 CAGGTCAAAG GTCAGAGG TCAGTGTCAG chr19:49136764-49136844 27 3.03e-05 GTCTTCGAGG GTCAAAGG TCTCGTGGCC chr16:30392369-30392449 58 3.03e-05 GGGGTCAAAG GTCAGAGG TCATCACTCA chr9:140513069-140513149 35 3.03e-05 GGGGTTAGAG GTCAGAGG TCGGAGCCGC chr4:8703471-8703551 21 3.03e-05 AGGGTTGGAG GTCAGAGG TCGGAGGTCA chr5:176981583-176981663 21 3.03e-05 CTGCCAACAG GTCAGAGG GCACGCGGAG chr12:70637137-70637217 39 3.03e-05 CACGGCGGCG GTCAGAGG GTAAAGGTCT chr2:109065613-109065693 46 3.03e-05 TAGAGCCTAC GTCAGAGG CTGGCGCAAA chr8:42698460-42698540 60 3.03e-05 TAGCCCCGAG GTCAGAGG TAACGTTTCC chr5:131516834-131516914 52 3.03e-05 ACGCCCACAG GTCAAAGG CCTTTCCAGA chr17:61920528-61920608 26 3.03e-05 GAGGCGCGGG GTCAGAGG TCTAAGGTCA chr11:118868811-11886889 34 3.03e-05 AGGGGTCAGG GTCAGAGG CCGCCGGATG chr18:54318813-54318893 72 3.03e-05 GGGGTCAGGG GTCAAAGG T chr19:10416145-10416225 22 3.03e-05 GCTCTGAAGG GTCAGAGG TCAAAGGGCA chr22:47158747-47158827 35 3.03e-05 GGGGTCAGGG GTCAGAGG TCAGGTGGCC chr17:62340767-62340847 46 4.89e-05 TGTCAGGTCT GTTAAAGG GGCCACCGCC chr2:153573938-153574018 62 4.89e-05 GGGGCTAAAG GTTAAAGG CTGCCCTGCG chr1:11862810-11862890 40 4.89e-05 TTTCTGCCGG GTTAAAGG GCAGCCCAGC chr4:47916774-47916854 59 6.06e-05 GGGGTCGAAG GTCATAGG GGCGCGTGGT chr20:36662087-36662167 54 9.07e-05 TCGCGGCAGG GTGAGAGG TCGGGTGGCC chr12:96252673-96252753 41 9.07e-05 GTGGTGGGAG GTGAAAGG TCATAGTCCT chr6:13615505-13615585 59 1.21e-04 CGGGTCAGAG GTCAGACG GTCTAGCGCT chr3:141747469-141747549 36 1.21e-04 TTGAGACTGT GTCAGACG TAAGCAATCG chr11:46615603-46615683 10 1.39e-04 GCCCCAGAC ATCAAAGG AGGAACGCCC chr5:143550193-143550273 6 1.58e-04 TACGT GTCACAGG GCCAAAGAAC chr2:219433452-219433532 4 2.07e-04 AGG GGCAAAGG ACATACTCTG chr11:64765782-64765862 67 2.07e-04 gcctgttatg ggcagagg tgtgga -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCARAGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:19745171-19745251 3e-05 50_[+5]_22 chr19:49136764-49136844 3e-05 26_[+5]_46 chr16:30392369-30392449 3e-05 57_[+5]_15 chr9:140513069-140513149 3e-05 34_[+5]_38 chr4:8703471-8703551 3e-05 20_[+5]_52 chr5:176981583-176981663 3e-05 20_[+5]_52 chr12:70637137-70637217 3e-05 38_[+5]_34 chr2:109065613-109065693 3e-05 45_[+5]_27 chr8:42698460-42698540 3e-05 59_[+5]_13 chr5:131516834-131516914 3e-05 51_[+5]_21 chr17:61920528-61920608 3e-05 25_[+5]_47 chr11:118868811-11886889 3e-05 33_[+5]_39 chr18:54318813-54318893 3e-05 71_[+5]_1 chr19:10416145-10416225 3e-05 21_[+5]_51 chr22:47158747-47158827 3e-05 34_[+5]_38 chr17:62340767-62340847 4.9e-05 45_[+5]_27 chr2:153573938-153574018 4.9e-05 61_[+5]_11 chr1:11862810-11862890 4.9e-05 39_[+5]_33 chr4:47916774-47916854 6.1e-05 58_[+5]_14 chr20:36662087-36662167 9.1e-05 53_[+5]_19 chr12:96252673-96252753 9.1e-05 40_[+5]_32 chr6:13615505-13615585 0.00012 58_[+5]_14 chr3:141747469-141747549 0.00012 35_[+5]_37 chr11:46615603-46615683 0.00014 9_[+5]_63 chr5:143550193-143550273 0.00016 5_[+5]_67 chr2:219433452-219433532 0.00021 3_[+5]_69 chr11:64765782-64765862 0.00021 66_[+5]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCARAGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTCARAGG width=8 seqs=27 chr19:19745171-19745251 ( 51) GTCAGAGG 1 chr19:49136764-49136844 ( 27) GTCAAAGG 1 chr16:30392369-30392449 ( 58) GTCAGAGG 1 chr9:140513069-140513149 ( 35) GTCAGAGG 1 chr4:8703471-8703551 ( 21) GTCAGAGG 1 chr5:176981583-176981663 ( 21) GTCAGAGG 1 chr12:70637137-70637217 ( 39) GTCAGAGG 1 chr2:109065613-109065693 ( 46) GTCAGAGG 1 chr8:42698460-42698540 ( 60) GTCAGAGG 1 chr5:131516834-131516914 ( 52) GTCAAAGG 1 chr17:61920528-61920608 ( 26) GTCAGAGG 1 chr11:118868811-11886889 ( 34) GTCAGAGG 1 chr18:54318813-54318893 ( 72) GTCAAAGG 1 chr19:10416145-10416225 ( 22) GTCAGAGG 1 chr22:47158747-47158827 ( 35) GTCAGAGG 1 chr17:62340767-62340847 ( 46) GTTAAAGG 1 chr2:153573938-153574018 ( 62) GTTAAAGG 1 chr1:11862810-11862890 ( 40) GTTAAAGG 1 chr4:47916774-47916854 ( 59) GTCATAGG 1 chr20:36662087-36662167 ( 54) GTGAGAGG 1 chr12:96252673-96252753 ( 41) GTGAAAGG 1 chr6:13615505-13615585 ( 59) GTCAGACG 1 chr3:141747469-141747549 ( 36) GTCAGACG 1 chr11:46615603-46615683 ( 10) ATCAAAGG 1 chr5:143550193-143550273 ( 6) GTCACAGG 1 chr2:219433452-219433532 ( 4) GGCAAAGG 1 chr11:64765782-64765862 ( 67) GGCAGAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCARAGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.9683 E= 7.6e-003 -231 -1140 163 -1140 -1140 -1140 -207 227 -1140 138 -207 -79 244 -1140 -1140 -1140 86 -308 93 -237 244 -1140 -1140 -1140 -1140 -208 157 -1140 -1140 -1140 168 -1140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCARAGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 7.6e-003 0.037037 0.000000 0.962963 0.000000 0.000000 0.000000 0.074074 0.925926 0.000000 0.814815 0.074074 0.111111 1.000000 0.000000 0.000000 0.000000 0.333333 0.037037 0.592593 0.037037 1.000000 0.000000 0.000000 0.000000 0.000000 0.074074 0.925926 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCARAGG MEME-5 regular expression -------------------------------------------------------------------------------- GTCA[GA]AGG -------------------------------------------------------------------------------- Time 19.59 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:64765782-64765862 4.17e-03 43_[+3(4.29e-06)]_29 chr15:63413880-63413960 1.00e-01 80 chr12:56401099-56401179 6.56e-01 80 chr16:27214781-27214861 9.22e-03 3_[+3(1.85e-05)]_69 chr22:35653374-35653454 4.55e-01 80 chr19:15543598-15543678 8.72e-01 80 chr19:13228942-13229022 6.95e-01 80 chr17:80376455-80376535 5.87e-01 80 chr1:53480524-53480604 7.00e-01 80 chr15:31195989-31196069 7.74e-02 9_[+3(1.85e-05)]_63 chr19:11513082-11513162 4.69e-02 42_[+4(9.67e-05)]_30 chr17:34842348-34842428 2.85e-01 80 chr1:27675449-27675529 4.44e-02 46_[+4(9.67e-05)]_10_[+4(7.62e-06)]_\ 8 chr11:45939728-45939808 4.19e-01 80 chrX:48455810-48455890 1.07e-01 80 chr12:48551258-48551338 1.91e-02 31_[+2(3.12e-05)]_41 chr2:61244734-61244814 4.54e-01 80 chr1:178062770-178062850 2.68e-01 80 chr16:12897780-12897860 9.31e-01 80 chr17:41869109-41869189 1.80e-01 9_[+3(6.96e-05)]_63 chr7:1015155-1015235 5.78e-01 80 chr7:44788298-44788378 9.72e-01 80 chr3:39149086-39149166 8.05e-02 80 chr16:9531118-9531198 1.55e-01 80 chr1:11862810-11862890 3.50e-02 39_[+5(4.89e-05)]_33 chr20:18118411-18118491 1.54e-01 27_[+3(9.80e-05)]_45 chr17:58213112-58213192 2.66e-01 80 chr17:1933347-1933427 1.62e-01 44_[+3(3.71e-05)]_28 chr9:36258446-36258526 3.63e-01 80 chr16:68279064-68279144 3.89e-02 80 chr9:139839149-139839229 4.98e-02 28_[+3(9.80e-05)]_44 chr9:136890491-136890571 2.17e-01 3_[+3(9.80e-05)]_69 chr1:12289990-12290070 1.98e-01 71_[+3(9.80e-05)]_1 chr5:53813453-53813533 6.75e-01 80 chr9:134378300-134378380 4.96e-01 80 chr4:123844193-123844273 2.68e-02 26_[+2(3.12e-05)]_46 chr19:48606782-48606862 1.11e-02 55_[+3(4.29e-06)]_17 chr8:105601496-105601576 1.58e-01 80 chr6:32098166-32098246 4.44e-01 80 chr1:156721654-156721734 4.38e-01 80 chr19:6393172-6393252 1.89e-02 43_[+2(3.12e-05)]_29 chr2:39103068-39103148 3.05e-03 40_[+1(2.09e-05)]_32 chr5:143550193-143550273 2.18e-02 26_[+1(5.46e-05)]_46 chr20:16710574-16710654 5.99e-04 [+2(3.12e-05)]_1_[+3(3.71e-05)]_31_\ [+3(9.80e-05)]_24 chr16:2255426-2255506 6.01e-02 [+3(3.71e-05)]_72 chr11:46615603-46615683 2.54e-02 80 chr1:151162650-151162730 4.77e-01 80 chr15:41408635-41408715 8.47e-02 80 chr7:139477895-139477975 3.17e-01 80 chr12:118810842-11881092 6.65e-02 80 chr4:6988843-6988923 7.38e-01 80 chr11:65382743-65382823 1.81e-01 80 chr14:66974557-66974637 7.02e-01 80 chr3:48481504-48481584 9.82e-02 40_[+4(2.00e-05)]_32 chr20:4042759-4042839 2.17e-01 80 chr8:145653916-145653996 9.77e-01 80 chr1:10534918-10534998 1.03e-01 12_[+1(7.56e-05)]_60 chr11:67236800-67236880 9.78e-01 80 chrX:54466709-54466789 6.54e-01 80 chr12:89919893-89919973 9.19e-01 80 chr14:31889910-31889990 4.43e-01 80 chr12:25403854-25403934 1.38e-01 80 chr19:49713396-49713476 8.27e-03 48_[+4(7.62e-06)]_24 chr4:668029-668109 1.48e-02 25_[+2(6.81e-05)]_47 chr6:42185583-42185663 1.96e-02 32_[+1(5.46e-05)]_40 chr22:47158747-47158827 9.58e-02 34_[+5(3.03e-05)]_38 chr10:103347982-10334806 6.42e-03 80 chr15:64648386-64648466 6.49e-01 80 chr13:113344118-11334419 1.28e-01 33_[+4(2.00e-05)]_39 chr19:1905758-1905838 7.78e-01 80 chr19:10416145-10416225 3.90e-02 21_[+5(3.03e-05)]_13_[+5(3.03e-05)]_\ 30 chr10:104180725-10418080 4.76e-04 56_[+3(6.53e-05)]_16 chr8:30013817-30013897 4.83e-01 80 chr18:54318813-54318893 7.32e-02 71_[+5(3.03e-05)]_1 chr12:2113702-2113782 8.29e-04 12_[+1(7.56e-05)]_48_[+3(9.80e-05)]_\ 4 chr8:142366736-142366816 5.67e-01 80 chr6:693098-693178 2.18e-01 80 chr1:171711186-171711266 4.09e-01 80 chr19:51963860-51963940 7.73e-01 80 chr19:965289-965369 5.37e-02 55_[+3(6.96e-05)]_17 chr3:157827794-157827874 4.21e-01 80 chr2:74699768-74699848 4.87e-02 31_[+2(3.12e-05)]_41 chr19:2328584-2328664 5.48e-02 24_[+4(7.62e-06)]_48 chr4:47916774-47916854 1.25e-01 58_[+5(6.06e-05)]_14 chr19:5358359-5358439 1.80e-03 66_[+3(2.12e-05)]_6 chr7:144533080-144533160 8.06e-01 80 chr11:32605283-32605363 4.58e-02 51_[+2(3.12e-05)]_21 chr11:118889036-11888911 3.37e-02 66_[+1(5.46e-05)]_6 chr12:69080689-69080769 4.97e-02 59_[+1(2.09e-05)]_13 chr11:118401849-11840192 7.36e-04 [+3(1.15e-05)]_47_[+4(9.67e-05)]_17 chr18:22006550-22006630 8.93e-04 20_[+2(3.12e-05)]_34_[+1(2.09e-05)]_\ 10 chr10:7860375-7860455 7.98e-01 80 chr22:31365367-31365447 1.27e-01 80 chr11:118868811-11886889 2.64e-02 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chr6:33257344-33257424 3.85e-02 23_[+1(2.09e-05)]_49 chr7:39663117-39663197 1.41e-01 39_[+2(3.12e-05)]_33 chr19:15537473-15537553 5.06e-02 56_[+3(1.15e-05)]_16 chr19:17420569-17420649 5.32e-02 35_[+4(9.67e-05)]_37 chr6:96025647-96025727 1.65e-01 56_[+3(6.53e-05)]_16 chr10:73345089-73345169 4.96e-01 80 chr7:99679348-99679428 3.79e-02 26_[+1(2.09e-05)]_46 chr14:78174357-78174437 1.19e-03 52_[+1(5.46e-05)]_20 chr12:57119098-57119178 4.04e-02 57_[+1(2.09e-05)]_15 chr17:61904763-61904843 8.58e-01 80 chr13:41837672-41837752 1.73e-02 61_[+1(2.09e-05)]_11 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n05.farnam.hpc.yale.internal ********************************************************************************