******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/NR2C1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr1:4236036-4236116 1.0000 80 chr2:132570336-132570416 1.0000 80 chr3:197901024-197901104 1.0000 80 chr2:3704365-3704445 1.0000 80 chr1:143274056-143274136 1.0000 80 chr3:52479325-52479405 1.0000 80 chr19:11513019-11513099 1.0000 80 chr19:49713409-49713489 1.0000 80 chr2:71615445-71615525 1.0000 80 chr9:37568675-37568755 1.0000 80 chr19:45317014-45317094 1.0000 80 chr6:33263565-33263645 1.0000 80 chr19:10416121-10416201 1.0000 80 chr11:64027128-64027208 1.0000 80 chr16:70669386-70669466 1.0000 80 chr17:37769323-37769403 1.0000 80 chr18:54318804-54318884 1.0000 80 chr22:37260198-37260278 1.0000 80 chr16:90188403-90188483 1.0000 80 chr1:27675482-27675562 1.0000 80 chr16:4608212-4608292 1.0000 80 chr19:51294403-51294483 1.0000 80 chr19:50919361-50919441 1.0000 80 chr1:147323444-147323524 1.0000 80 chr22:47331696-47331776 1.0000 80 chr20:42087857-42087937 1.0000 80 chr5:148745147-148745227 1.0000 80 chr15:102520971-10252105 1.0000 80 chr1:27933996-27934076 1.0000 80 chr19:10102615-10102695 1.0000 80 chr1:1175296-1175376 1.0000 80 chrX:70208422-70208502 1.0000 80 chr1:26516017-26516097 1.0000 80 chr8:145011956-145012036 1.0000 80 chr16:69795-69875 1.0000 80 chr3:125153722-125153802 1.0000 80 chr19:10197296-10197376 1.0000 80 chr19:19745174-19745254 1.0000 80 chr1:110752516-110752596 1.0000 80 chr16:2586542-2586622 1.0000 80 chr5:131516832-131516912 1.0000 80 chr13:113344069-11334414 1.0000 80 chr17:61920532-61920612 1.0000 80 chr19:51963859-51963939 1.0000 80 chr8:144816249-144816329 1.0000 80 chrX:54208902-54208982 1.0000 80 chr11:1229414-1229494 1.0000 80 chr17:1371229-1371309 1.0000 80 chr2:27603295-27603375 1.0000 80 chr17:38083139-38083219 1.0000 80 chr11:76316945-76317025 1.0000 80 chr4:1044894-1044974 1.0000 80 chr20:43858260-43858340 1.0000 80 chr17:47999719-47999799 1.0000 80 chr17:80489022-80489102 1.0000 80 chr19:45811711-45811791 1.0000 80 chr5:49723-49803 1.0000 80 chr7:6865934-6866014 1.0000 80 chr12:48551223-48551303 1.0000 80 chr14:24912085-24912165 1.0000 80 chr22:47158720-47158800 1.0000 80 chrX:2549331-2549411 1.0000 80 chr19:1173714-1173794 1.0000 80 chr7:128478251-128478331 1.0000 80 chr22:35887534-35887614 1.0000 80 chr19:17420638-17420718 1.0000 80 chr15:65140680-65140760 1.0000 80 chr10:103815480-10381556 1.0000 80 chr20:19997931-19998011 1.0000 80 chr8:21897270-21897350 1.0000 80 chr8:182396-182476 1.0000 80 chr19:17108090-17108170 1.0000 80 chr11:126199011-12619909 1.0000 80 chr20:62331303-62331383 1.0000 80 chr19:6313533-6313613 1.0000 80 chr11:118868824-11886890 1.0000 80 chr20:61669293-61669373 1.0000 80 chr14:93460595-93460675 1.0000 80 chr19:3339043-3339123 1.0000 80 chr19:49099672-49099752 1.0000 80 chr6:146285286-146285366 1.0000 80 chr19:38943103-38943183 1.0000 80 chr13:41837662-41837742 1.0000 80 chr1:155151494-155151574 1.0000 80 chr18:61157727-61157807 1.0000 80 chr19:49136792-49136872 1.0000 80 chr11:62495846-62495926 1.0000 80 chr4:187762364-187762444 1.0000 80 chr19:1874639-1874719 1.0000 80 chr8:29154036-29154116 1.0000 80 chr16:30392775-30392855 1.0000 80 chr8:28102229-28102309 1.0000 80 chr8:13082071-13082151 1.0000 80 chr19:53758038-53758118 1.0000 80 chrX:2549044-2549124 1.0000 80 chr8:23248432-23248512 1.0000 80 chr19:51403009-51403089 1.0000 80 chr11:72490890-72490970 1.0000 80 chr11:64073581-64073661 1.0000 80 chr10:101491802-10149188 1.0000 80 chr16:30392523-30392603 1.0000 80 chr11:59382697-59382777 1.0000 80 chr12:56282520-56282600 1.0000 80 chr9:141127437-141127517 1.0000 80 chr8:21867731-21867811 1.0000 80 chr11:86158092-86158172 1.0000 80 chr6:169852562-169852642 1.0000 80 chr12:56596296-56596376 1.0000 80 chr19:52956759-52956839 1.0000 80 chr5:176981607-176981687 1.0000 80 chr7:72321485-72321565 1.0000 80 chr10:103347951-10334803 1.0000 80 chr12:498785-498865 1.0000 80 chr19:51041196-51041276 1.0000 80 chr2:240206802-240206882 1.0000 80 chr7:5938242-5938322 1.0000 80 chr9:35834821-35834901 1.0000 80 chrX:155249505-155249585 1.0000 80 chr19:37178342-37178422 1.0000 80 chr22:16883797-16883877 1.0000 80 chr5:143550173-143550253 1.0000 80 chr1:78245275-78245355 1.0000 80 chr16:30710537-30710617 1.0000 80 chr1:18458702-18458782 1.0000 80 chr2:232826377-232826457 1.0000 80 chr19:1068251-1068331 1.0000 80 chr9:14993247-14993327 1.0000 80 chr2:152144854-152144934 1.0000 80 chr19:6393192-6393272 1.0000 80 chr3:119395972-119396052 1.0000 80 chr2:3381137-3381217 1.0000 80 chr20:43767647-43767727 1.0000 80 chr15:83781879-83781959 1.0000 80 chr3:178865834-178865914 1.0000 80 chr1:183905299-183905379 1.0000 80 chr3:14316087-14316167 1.0000 80 chr9:116036893-116036973 1.0000 80 chrX:2550344-2550424 1.0000 80 chr12:69864126-69864206 1.0000 80 chr19:50909844-50909924 1.0000 80 chr6:163991725-163991805 1.0000 80 chr16:30640150-30640230 1.0000 80 chr1:910309-910389 1.0000 80 chr3:48481511-48481591 1.0000 80 chr10:99185798-99185878 1.0000 80 chr4:123844199-123844279 1.0000 80 chr8:28747338-28747418 1.0000 80 chr14:75469604-75469684 1.0000 80 chr4:8703459-8703539 1.0000 80 chr8:88886283-88886363 1.0000 80 chr14:75593742-75593822 1.0000 80 chr3:45506093-45506173 1.0000 80 chrX:2549623-2549703 1.0000 80 chr22:51143702-51143782 1.0000 80 chr17:72355019-72355099 1.0000 80 chr19:1020633-1020713 1.0000 80 chr10:50543569-50543649 1.0000 80 chr5:67721029-67721109 1.0000 80 chr11:3188173-3188253 1.0000 80 chr1:151137999-151138079 1.0000 80 chr14:21458055-21458135 1.0000 80 chr2:39103036-39103116 1.0000 80 chr19:42937873-42937953 1.0000 80 chr1:3663914-3663994 1.0000 80 chr3:100120007-100120087 1.0000 80 chr14:35761567-35761647 1.0000 80 chr11:134632369-13463244 1.0000 80 chr20:62918398-62918478 1.0000 80 chr4:144106077-144106157 1.0000 80 chr11:62284357-62284437 1.0000 80 chr2:100794761-100794841 1.0000 80 chr3:121468760-121468840 1.0000 80 chr20:39542021-39542101 1.0000 80 chr2:132560972-132561052 1.0000 80 chr13:50018450-50018530 1.0000 80 chr8:101738761-101738841 1.0000 80 chr16:14013997-14014077 1.0000 80 chr22:43485445-43485525 1.0000 80 chr2:102798602-102798682 1.0000 80 chr19:19477708-19477788 1.0000 80 chr1:27691013-27691093 1.0000 80 chr19:44405944-44406024 1.0000 80 chr19:39536879-39536959 1.0000 80 chr7:39663141-39663221 1.0000 80 chr22:39898308-39898388 1.0000 80 chr2:219433430-219433510 1.0000 80 chr10:22994062-22994142 1.0000 80 chr19:59069496-59069576 1.0000 80 chr20:48532162-48532242 1.0000 80 chr11:47490307-47490387 1.0000 80 chr11:65319166-65319246 1.0000 80 chr2:58274346-58274426 1.0000 80 chr17:61904516-61904596 1.0000 80 chr20:43859404-43859484 1.0000 80 chr22:41215281-41215361 1.0000 80 chrX:53024683-53024763 1.0000 80 chr1:762797-762877 1.0000 80 chr17:6374166-6374246 1.0000 80 chr10:102747266-10274734 1.0000 80 chr22:36822423-36822503 1.0000 80 chr2:187867870-187867950 1.0000 80 chr11:71170958-71171038 1.0000 80 chrX:153775788-153775868 1.0000 80 chrX:43138660-43138740 1.0000 80 chr17:1227643-1227723 1.0000 80 chr2:70314440-70314520 1.0000 80 chr6:109767370-109767450 1.0000 80 chr9:125675575-125675655 1.0000 80 chr16:2239664-2239744 1.0000 80 chr12:56223392-56223472 1.0000 80 chr15:60878100-60878180 1.0000 80 chr21:46738916-46738996 1.0000 80 chr19:46914851-46914931 1.0000 80 chr9:74526516-74526596 1.0000 80 chr1:155178998-155179078 1.0000 80 chr2:70528454-70528534 1.0000 80 chr15:64648366-64648446 1.0000 80 chr16:67700650-67700730 1.0000 80 chrX:7895721-7895801 1.0000 80 chr10:72475741-72475821 1.0000 80 chr4:185334871-185334951 1.0000 80 chr22:44351210-44351290 1.0000 80 chr22:51020989-51021069 1.0000 80 chr9:38195850-38195930 1.0000 80 chr17:37385600-37385680 1.0000 80 chr3:52485708-52485788 1.0000 80 chr3:37285163-37285243 1.0000 80 chr7:76751680-76751760 1.0000 80 chr1:101360723-101360803 1.0000 80 chr3:49195700-49195780 1.0000 80 chr15:85114261-85114341 1.0000 80 chr17:7218703-7218783 1.0000 80 chr14:24701696-24701776 1.0000 80 chr1:226496212-226496292 1.0000 80 chr20:35513905-35513985 1.0000 80 chr15:48623593-48623673 1.0000 80 chr1:7887443-7887523 1.0000 80 chr14:35452058-35452138 1.0000 80 chr2:238969349-238969429 1.0000 80 chr10:27443296-27443376 1.0000 80 chr12:70637112-70637192 1.0000 80 chr7:140469796-140469876 1.0000 80 chr1:228558156-228558236 1.0000 80 chrX:2547782-2547862 1.0000 80 chr12:95467296-95467376 1.0000 80 chr22:38349644-38349724 1.0000 80 chr20:62668029-62668109 1.0000 80 chr5:93954302-93954382 1.0000 80 chr17:37844260-37844340 1.0000 80 chr2:230786945-230787025 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_NR2C1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/NR2C1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.211 C 0.282 G 0.295 T 0.211 Background letter frequencies (from file dataset with add-one prior applied): A 0.211 C 0.282 G 0.295 T 0.211 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGACCTCT MEME-1 width = 8 sites = 70 llr = 617 E-value = 1.1e-055 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGACCTCT MEME-1 Description -------------------------------------------------------------------------------- Simplified A :19::::1 pos.-specific C ::1a928: probability G :9:::::: matrix T a::::829 bits 2.2 * 2.0 * 1.8 * ** 1.6 * *** * Relative 1.3 ****** * Entropy 1.1 ****** * (12.7 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGACCTCT consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACCTCT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr20:62668029-62668109 25 1.31e-05 GTTCTCGCTA TGACCTCT GACCCAGAGC chr12:95467296-95467376 42 1.31e-05 TCAGAGTTCG TGACCTCT TTCTCGGCTC chr1:228558156-228558236 49 1.31e-05 CTGTCACCTC TGACCTCT GGCCTTTGCC chr17:37385600-37385680 52 1.31e-05 ATGGATGCCA TGACCTCT CGATGTCCTT chr10:72475741-72475821 39 1.31e-05 TTTTGACCCT TGACCTCT GACTCATGCA chr1:151137999-151138079 17 1.31e-05 CTCGCTACAT TGACCTCT GACCTTTGAA chr3:48481511-48481591 29 1.31e-05 GCCACTCAGT TGACCTCT GACCTGTTAG chr6:163991725-163991805 30 1.31e-05 TATGACCTTC TGACCTCT GAACTCTTCA chr15:83781879-83781959 35 1.31e-05 CAGCATGCTT TGACCTCT GACCTCTGAC chr19:1068251-1068331 28 1.31e-05 CTCGGCCCTG TGACCTCT GGCCTTTGAC chr12:56596296-56596376 70 1.31e-05 tgtagtttgc tgacctct gAC chr19:38943103-38943183 14 1.31e-05 TCTAAACTCC TGACCTCT GTACACTTGA chr19:49099672-49099752 25 1.31e-05 CCCCCCACTG TGACCTCT GCCCCCGGCT chr11:126199011-12619909 43 1.31e-05 GCCTGACCTC TGACCTCT GGCCCATGAC chr7:128478251-128478331 53 1.31e-05 AGCTAACCTT TGACCTCT GACCCCTAGG chr17:47999719-47999799 31 1.31e-05 CCCTGCTCCC TGAcctct gccctctacc chr11:1229414-1229494 14 1.31e-05 CTGACCACCG TGACCTCT GAATGGGGTC chr5:131516832-131516912 30 1.31e-05 TCTCACCACC TGACCTCT AGGAACACGC chr3:125153722-125153802 43 1.31e-05 GTCTGACCCC TGACCTCT AACCCCTGAC chr1:26516017-26516097 13 1.31e-05 TCCGACCTCC TGACCTCT GACCCTGGCC chr19:50919361-50919441 35 1.31e-05 CTTAGCCCCA TGACCTCT GACCTCCTGA chr19:51294403-51294483 62 1.31e-05 CTTGCCCTCT TGACCTCT AACCTTTAAC chr1:27675482-27675562 34 1.31e-05 ATATGACCTT TGACCTCT TCCTCACCAG chr22:37260198-37260278 26 1.31e-05 TCCACCCAGC TGACCTCT GAACCTTGCC chr19:45317014-45317094 43 1.31e-05 AGCCCCATCC TGACCTCT GACCTCCGAC chr19:49713409-49713489 38 1.31e-05 AAGTGACCTT TGACCTCT GGCCTTTGCA chr3:37285163-37285243 44 2.29e-05 AGTTCTTCCG TGACCTTT AACCCCTAAC chrX:7895721-7895801 2 2.29e-05 C TGACCTTT AATAATCCTC chr11:62284357-62284437 28 2.29e-05 CACCTCATAA TGACCTTT GCTCTTTGAC chr19:42937873-42937953 51 2.29e-05 GCTGAATTAC TGACCTTT GCACTCACAT chr1:155151494-155151574 26 2.29e-05 CTGGCCCTTC TGACCTTT TGTCCTTGTG chr2:27603295-27603375 40 2.29e-05 CCCTGACCCC TGACCTTT GACCCCCTCG chr17:37769323-37769403 41 2.29e-05 AAAGGTGGCG TGACCTTT GCTCCCGTAA chr2:71615445-71615525 44 2.29e-05 tttgatcatc tgaccttt gatcatccga chr19:46914851-46914931 14 4.04e-05 CTGTAACCTC TGACCCCT GGTCAGCTGG chr22:51143702-51143782 31 4.04e-05 CTGAGGCCTT TGACCCCT GACCCCTGAC chr22:16883797-16883877 24 4.04e-05 cccctgaccc tgacccct aacccctgac chr17:80489022-80489102 41 4.04e-05 TTGTAGCCTT TGACCCCT GGGTGACCTC chr8:144816249-144816329 9 4.04e-05 TCCCAGCC TGACCCCT GACCCTCGCC chr16:4608212-4608292 44 4.04e-05 CTTTGACTGC TGACCCCT GCTAACCCCG chr1:143274056-143274136 9 4.04e-05 cctgaccc tgacccct gaccctgatc chr3:45506093-45506173 35 6.29e-05 CTCTGCCCTC TGACCTCA AGAAAGCACC chr19:50909844-50909924 22 6.29e-05 CCCCCACGTC TGACCTCA CTCTTTGACC chr19:51041196-51041276 51 6.29e-05 ATGTCCCAGT TGACCTCA AGAGAGGTCA chr17:38083139-38083219 60 6.29e-05 CCACAGCTGA TAACCTCT CAACTTTGGC chr5:148745147-148745227 68 6.29e-05 TTATGAACTA TGACCTCA GGCAG chr1:147323444-147323524 20 6.29e-05 tttagctctc taacctct gaactctgca chr11:64027128-64027208 49 6.29e-05 CCCTGACCTG TAACCTCT CTATGTCATC chr16:2239664-2239744 28 1.03e-04 CGCTAGGAGC TGACTTCT GACACCAAGC chr19:44405944-44406024 59 1.03e-04 CCTAGCGCGG TGACTTCT GGGAAATGTA chr8:28747338-28747418 24 1.03e-04 GCATCACCTT TGCCCTCT GACCTAGGAG chr4:123844199-123844279 11 1.03e-04 GGACCCTCGC TGACTTCT GCCCCGGAAG chr8:21897270-21897350 24 1.03e-04 GGGTGCCCTT TGCCCTCT GCCCTTTGCC chr14:24912085-24912165 15 1.03e-04 ATCCTGTGCG TGACCCTT CTCGGCGACC chr16:2586542-2586622 32 1.03e-04 TTTCTTCTTG TGACCCTT GACCCTTGGC chr16:69795-69875 63 1.03e-04 accctgaccc tgaccctt gaccctgacc chr20:42087857-42087937 32 1.03e-04 CCTTGCCCTA TGACCCTT TGGCTGACCT chr1:4236036-4236116 4 1.03e-04 GTG TGCCCTCT GACCTCCGAC chr1:18458702-18458782 34 1.13e-04 ctatgaccta tgacctat gacctatgac chr15:65140680-65140760 41 1.13e-04 ATCCCTTGTG TGACCTAT GAACCTGTGA chr20:43859404-43859484 73 1.31e-04 GAGGCACCTC TGACCTCC chr19:59069496-59069576 3 1.31e-04 CT TGACCTCC GACCCCCCCC chr19:6313533-6313613 42 1.78e-04 agaatgtaaa tgacatct actacttcca chr22:36822423-36822503 42 1.92e-04 GTTTCCCCTT TGACCTGT CAGCTGGCCA chr15:85114261-85114341 25 2.34e-04 ccctcacccc tcacctct caccccCGCG chr19:17420638-17420718 37 2.34e-04 CTCCGACCCC TGACCCCA TCCAGGATAC chr2:132570336-132570416 29 2.34e-04 ccctgaaccc taacccct gaccctaacc chr15:60878100-60878180 1 2.84e-04 . TGACCTTC CCACTAGCCT chr2:100794761-100794841 72 2.84e-04 cggaagttac tgccccct c chr22:35887534-35887614 5 2.84e-04 AGCG TGCCCCCT GCCCCAGATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACCTCT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr20:62668029-62668109 1.3e-05 24_[+1]_48 chr12:95467296-95467376 1.3e-05 41_[+1]_31 chr1:228558156-228558236 1.3e-05 48_[+1]_24 chr17:37385600-37385680 1.3e-05 51_[+1]_21 chr10:72475741-72475821 1.3e-05 38_[+1]_34 chr1:151137999-151138079 1.3e-05 16_[+1]_56 chr3:48481511-48481591 1.3e-05 28_[+1]_44 chr6:163991725-163991805 1.3e-05 29_[+1]_43 chr15:83781879-83781959 1.3e-05 34_[+1]_38 chr19:1068251-1068331 1.3e-05 27_[+1]_45 chr12:56596296-56596376 1.3e-05 69_[+1]_3 chr19:38943103-38943183 1.3e-05 13_[+1]_59 chr19:49099672-49099752 1.3e-05 24_[+1]_48 chr11:126199011-12619909 1.3e-05 42_[+1]_30 chr7:128478251-128478331 1.3e-05 52_[+1]_20 chr17:47999719-47999799 1.3e-05 30_[+1]_42 chr11:1229414-1229494 1.3e-05 13_[+1]_59 chr5:131516832-131516912 1.3e-05 29_[+1]_43 chr3:125153722-125153802 1.3e-05 42_[+1]_30 chr1:26516017-26516097 1.3e-05 12_[+1]_60 chr19:50919361-50919441 1.3e-05 34_[+1]_38 chr19:51294403-51294483 1.3e-05 61_[+1]_11 chr1:27675482-27675562 1.3e-05 33_[+1]_39 chr22:37260198-37260278 1.3e-05 25_[+1]_47 chr19:45317014-45317094 1.3e-05 42_[+1]_30 chr19:49713409-49713489 1.3e-05 37_[+1]_35 chr3:37285163-37285243 2.3e-05 43_[+1]_29 chrX:7895721-7895801 2.3e-05 1_[+1]_71 chr11:62284357-62284437 2.3e-05 27_[+1]_45 chr19:42937873-42937953 2.3e-05 50_[+1]_22 chr1:155151494-155151574 2.3e-05 25_[+1]_47 chr2:27603295-27603375 2.3e-05 39_[+1]_33 chr17:37769323-37769403 2.3e-05 40_[+1]_32 chr2:71615445-71615525 2.3e-05 43_[+1]_29 chr19:46914851-46914931 4e-05 13_[+1]_59 chr22:51143702-51143782 4e-05 30_[+1]_42 chr22:16883797-16883877 4e-05 23_[+1]_49 chr17:80489022-80489102 4e-05 40_[+1]_32 chr8:144816249-144816329 4e-05 8_[+1]_64 chr16:4608212-4608292 4e-05 43_[+1]_29 chr1:143274056-143274136 4e-05 8_[+1]_64 chr3:45506093-45506173 6.3e-05 34_[+1]_38 chr19:50909844-50909924 6.3e-05 21_[+1]_51 chr19:51041196-51041276 6.3e-05 50_[+1]_22 chr17:38083139-38083219 6.3e-05 59_[+1]_13 chr5:148745147-148745227 6.3e-05 67_[+1]_5 chr1:147323444-147323524 6.3e-05 19_[+1]_53 chr11:64027128-64027208 6.3e-05 48_[+1]_24 chr16:2239664-2239744 0.0001 27_[+1]_45 chr19:44405944-44406024 0.0001 58_[+1]_14 chr8:28747338-28747418 0.0001 23_[+1]_49 chr4:123844199-123844279 0.0001 10_[+1]_62 chr8:21897270-21897350 0.0001 23_[+1]_49 chr14:24912085-24912165 0.0001 14_[+1]_58 chr16:2586542-2586622 0.0001 31_[+1]_41 chr16:69795-69875 0.0001 62_[+1]_10 chr20:42087857-42087937 0.0001 31_[+1]_41 chr1:4236036-4236116 0.0001 3_[+1]_69 chr1:18458702-18458782 0.00011 33_[+1]_39 chr15:65140680-65140760 0.00011 40_[+1]_32 chr20:43859404-43859484 0.00013 72_[+1] chr19:59069496-59069576 0.00013 2_[+1]_70 chr19:6313533-6313613 0.00018 41_[+1]_31 chr22:36822423-36822503 0.00019 41_[+1]_31 chr15:85114261-85114341 0.00023 24_[+1]_48 chr19:17420638-17420718 0.00023 36_[+1]_36 chr2:132570336-132570416 0.00023 28_[+1]_44 chr15:60878100-60878180 0.00028 [+1]_72 chr2:100794761-100794841 0.00028 71_[+1]_1 chr22:35887534-35887614 0.00028 4_[+1]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACCTCT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGACCTCT width=8 seqs=70 chr20:62668029-62668109 ( 25) TGACCTCT 1 chr12:95467296-95467376 ( 42) TGACCTCT 1 chr1:228558156-228558236 ( 49) TGACCTCT 1 chr17:37385600-37385680 ( 52) TGACCTCT 1 chr10:72475741-72475821 ( 39) TGACCTCT 1 chr1:151137999-151138079 ( 17) TGACCTCT 1 chr3:48481511-48481591 ( 29) TGACCTCT 1 chr6:163991725-163991805 ( 30) TGACCTCT 1 chr15:83781879-83781959 ( 35) TGACCTCT 1 chr19:1068251-1068331 ( 28) TGACCTCT 1 chr12:56596296-56596376 ( 70) TGACCTCT 1 chr19:38943103-38943183 ( 14) TGACCTCT 1 chr19:49099672-49099752 ( 25) TGACCTCT 1 chr11:126199011-12619909 ( 43) TGACCTCT 1 chr7:128478251-128478331 ( 53) TGACCTCT 1 chr17:47999719-47999799 ( 31) TGACCTCT 1 chr11:1229414-1229494 ( 14) TGACCTCT 1 chr5:131516832-131516912 ( 30) TGACCTCT 1 chr3:125153722-125153802 ( 43) TGACCTCT 1 chr1:26516017-26516097 ( 13) TGACCTCT 1 chr19:50919361-50919441 ( 35) TGACCTCT 1 chr19:51294403-51294483 ( 62) TGACCTCT 1 chr1:27675482-27675562 ( 34) TGACCTCT 1 chr22:37260198-37260278 ( 26) TGACCTCT 1 chr19:45317014-45317094 ( 43) TGACCTCT 1 chr19:49713409-49713489 ( 38) TGACCTCT 1 chr3:37285163-37285243 ( 44) TGACCTTT 1 chrX:7895721-7895801 ( 2) TGACCTTT 1 chr11:62284357-62284437 ( 28) TGACCTTT 1 chr19:42937873-42937953 ( 51) TGACCTTT 1 chr1:155151494-155151574 ( 26) TGACCTTT 1 chr2:27603295-27603375 ( 40) TGACCTTT 1 chr17:37769323-37769403 ( 41) TGACCTTT 1 chr2:71615445-71615525 ( 44) TGACCTTT 1 chr19:46914851-46914931 ( 14) TGACCCCT 1 chr22:51143702-51143782 ( 31) TGACCCCT 1 chr22:16883797-16883877 ( 24) TGACCCCT 1 chr17:80489022-80489102 ( 41) TGACCCCT 1 chr8:144816249-144816329 ( 9) TGACCCCT 1 chr16:4608212-4608292 ( 44) TGACCCCT 1 chr1:143274056-143274136 ( 9) TGACCCCT 1 chr3:45506093-45506173 ( 35) TGACCTCA 1 chr19:50909844-50909924 ( 22) TGACCTCA 1 chr19:51041196-51041276 ( 51) TGACCTCA 1 chr17:38083139-38083219 ( 60) TAACCTCT 1 chr5:148745147-148745227 ( 68) TGACCTCA 1 chr1:147323444-147323524 ( 20) TAACCTCT 1 chr11:64027128-64027208 ( 49) TAACCTCT 1 chr16:2239664-2239744 ( 28) TGACTTCT 1 chr19:44405944-44406024 ( 59) TGACTTCT 1 chr8:28747338-28747418 ( 24) TGCCCTCT 1 chr4:123844199-123844279 ( 11) TGACTTCT 1 chr8:21897270-21897350 ( 24) TGCCCTCT 1 chr14:24912085-24912165 ( 15) TGACCCTT 1 chr16:2586542-2586622 ( 32) TGACCCTT 1 chr16:69795-69875 ( 63) TGACCCTT 1 chr20:42087857-42087937 ( 32) TGACCCTT 1 chr1:4236036-4236116 ( 4) TGCCCTCT 1 chr1:18458702-18458782 ( 34) TGACCTAT 1 chr15:65140680-65140760 ( 41) TGACCTAT 1 chr20:43859404-43859484 ( 73) TGACCTCC 1 chr19:59069496-59069576 ( 3) TGACCTCC 1 chr19:6313533-6313613 ( 42) TGACATCT 1 chr22:36822423-36822503 ( 42) TGACCTGT 1 chr15:85114261-85114341 ( 25) TCACCTCT 1 chr19:17420638-17420718 ( 37) TGACCCCA 1 chr2:132570336-132570416 ( 29) TAACCCCT 1 chr15:60878100-60878180 ( 1) TGACCTTC 1 chr2:100794761-100794841 ( 72) TGCCCCCT 1 chr22:35887534-35887614 ( 5) TGCCCCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACCTCT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0499 E= 1.1e-055 -1277 -1277 -1277 225 -189 -430 165 -1277 213 -198 -1277 -1277 -1277 182 -1277 -1277 -388 174 -1277 -230 -1277 -40 -1277 190 -289 145 -437 -18 -157 -272 -1277 207 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACCTCT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 70 E= 1.1e-055 0.000000 0.000000 0.000000 1.000000 0.057143 0.014286 0.928571 0.000000 0.928571 0.071429 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.014286 0.942857 0.000000 0.042857 0.000000 0.214286 0.000000 0.785714 0.028571 0.771429 0.014286 0.185714 0.071429 0.042857 0.000000 0.885714 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACCTCT MEME-1 regular expression -------------------------------------------------------------------------------- TGACC[TC]CT -------------------------------------------------------------------------------- Time 5.09 secs. ******************************************************************************** ******************************************************************************** MOTIF ARRGGTCA MEME-2 width = 8 sites = 95 llr = 742 E-value = 9.1e-054 ******************************************************************************** -------------------------------------------------------------------------------- Motif ARRGGTCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 656::::a pos.-specific C 31::::9: probability G 144aa1:: matrix T 1::::91: bits 2.2 * 2.0 * * 1.8 * * * 1.6 ***** Relative 1.3 ***** Entropy 1.1 ****** (11.3 bits) 0.9 ****** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAGGTCA consensus CGG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARRGGTCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:238969349-238969429 36 1.03e-05 CGCAGACAGC AAAGGTCA CGGGGCTCCC chr20:35513905-35513985 36 1.03e-05 ccttcaggtc aaaggtca tgtccttcga chr3:49195700-49195780 51 1.03e-05 GACAAAGGGC AAAGGTCA GGGTCATGAA chr9:38195850-38195930 57 1.03e-05 gtcagaggtc aaaggtca gacagcccac chr11:47490307-47490387 10 1.03e-05 ATCAGCATC AAAGGTCA ACACAAGGTC chr5:67721029-67721109 29 1.03e-05 aagggctatg aaaggtca agggtgaaag chr1:910309-910389 1 1.03e-05 . AAAGGTCA GCAGGGTCAG chr1:183905299-183905379 56 1.03e-05 GTCAAATGTC AAAGGTCA AATGTCTTGG chr7:72321485-72321565 73 1.03e-05 cctccgggtt aaaggtca chr11:64073581-64073661 47 1.03e-05 TCTCTGGGTC AAAGGTCA TCGCACCGGC chr11:72490890-72490970 54 1.03e-05 GTCAGAGGGG AAAGGTCA GACATCTCAG chr8:28102229-28102309 46 1.03e-05 GTCAGGGGTC AAAGGTCA CTAGGCAACT chr19:49136792-49136872 56 1.03e-05 GGTCGGGTTC AAAGGTCA TCAACACCTC chr10:103815480-10381556 42 1.03e-05 TGGCGGGGTC AAAGGTCA GCACCTCGGA chr11:76316945-76317025 51 1.03e-05 gtcaaaggtc aaaggtca agccaggcac chr19:19745174-19745254 44 1.03e-05 AACACAGGTC AAAGGTCA GAGGTCAGTG chr19:10197296-10197376 48 1.03e-05 CTGCAGGGTC AAAGGTCA GAGGCCAGAG chr1:27933996-27934076 29 1.03e-05 GCCAGAGGGC AAAGGTCA GCTTTGTTCC chr3:52485708-52485788 68 2.46e-05 AACATGCGGA AGAGGTCA GACAG chr17:6374166-6374246 71 2.46e-05 GTCCAGGGTC AGAGGTCA AG chr11:3188173-3188253 32 2.46e-05 TGCTGAGGGC AGAGGTCA AAAGTCAAAG chr4:8703459-8703539 50 2.46e-05 GTCGGAGGTC AGAGGTCA CTGCAGTGGA chr16:30640150-30640230 63 2.46e-05 ttcagaggga agaggtca ggccttggaa chr19:51041196-51041276 61 2.46e-05 TGACCTCAAG AGAGGTCA GCTCCTAGAT chr22:47158720-47158800 65 2.46e-05 GTCAGGGGTC AGAGGTCA GGTGGCCG chr8:145011956-145012036 31 2.46e-05 GGTAAAGGGC AGAGGTCA AGGTTCAGAG chr19:10102615-10102695 38 2.46e-05 CAGAAGGGTC AGAGGTCA AAGGGCACAG chr16:70669386-70669466 48 2.46e-05 GTTGGAGGTC AGAGGTCA GAGGTCGGAA chr19:10416121-10416201 49 2.46e-05 CTGAAGGGTC AGAGGTCA AAGGGCAGGG chr2:3704365-3704445 53 2.46e-05 TGTGGAGGGC AGAGGTCA GGGTGTGGAG chr8:101738761-101738841 45 3.90e-05 TCATAAGGTC AAGGGTCA TAAACACAGA chrX:155249505-155249585 46 3.90e-05 ggtcagggtc aagggtca gggtcagggg chr9:141127437-141127517 33 3.90e-05 ggttagggtt aagggtca gggtcagggg chr12:56282520-56282600 29 3.90e-05 tgctgagttg aagggtca aagatcagag chr1:1175296-1175376 43 3.90e-05 GCATGGGGTC AAGGGTCA GGGGTCAGGG chr16:90188403-90188483 36 3.90e-05 ggttagggtt aagggtca gggtcagggg chr3:197901024-197901104 32 3.90e-05 gttaagggtt aagggtca gggtcagggg chr21:46738916-46738996 18 5.27e-05 AGAGCCAGGC CAAGGTCA AAGGGCACCG chr1:18458702-18458782 70 5.27e-05 TGACCTATGA CAAGGTCA TAT chr11:71170958-71171038 60 7.27e-05 tcaaggggtc aggggtca gcagcaagcc chr11:118868824-11886890 11 7.27e-05 CCCCACCCCG AGGGGTCA GGGTCAGAGG chr18:54318804-54318884 70 7.27e-05 CGTGGAGGTC AGGGGTCA GGG chr15:48623593-48623673 24 9.19e-05 CGACTGCTTC CGAGGTCA TGTTCCCAGG chr10:102747266-10274734 39 9.19e-05 GTTTTGCTTC CGAGGTCA AGGCGAGTAG chr20:61669293-61669373 45 9.19e-05 ACGGGGCTTC CGAGGTCA CTCAGCATAG chr11:65319166-65319246 69 1.06e-04 GCCTTGGGTT ACAGGTCA GGCT chr5:131516832-131516912 50 1.06e-04 GAACACGCCC ACAGGTCA AAGGCCTTTC chr2:58274346-58274426 57 1.35e-04 TTACCTTCCG CAGGGTCA GGGGCCGCGG chr5:176981607-176981687 61 1.35e-04 CCATTTTGAA TAAGGTCA CCACCCGGAG chr5:49723-49803 71 1.35e-04 gggttagggt cagggtca gg chr17:61920532-61920612 32 1.35e-04 GTCAGAGGTC TAAGGTCA CTTAGGGGCT chr15:102520971-10252105 36 1.35e-04 gggtcggggt cagggtca cggttagggg chr9:37568675-37568755 44 1.35e-04 TCATGTGGTC TAAGGTCA GAGTTCATGT chr2:230786945-230787025 37 1.76e-04 ATCCCTCCGC CGGGGTCA CCCCCTCCCC chr16:67700650-67700730 22 1.76e-04 CTTCCGTCCC CGGGGTCA GGGCCCACTG chr12:56223392-56223472 33 1.76e-04 CTTCCACTTC CGGGGTCA CCAGGGAAGA chr17:1227643-1227723 28 1.76e-04 GCCCTGCTTC CGGGGTCA TCGCCTCCTC chr16:30392775-30392855 40 1.76e-04 GGAGAGGATG TGAGGTCA GAGATCAAAG chr8:29154036-29154116 16 1.76e-04 gtttcccttc cggggtca gaaccgcctg chr20:62331303-62331383 41 1.76e-04 TTcggggtca cggggtca cggggtcacA chr19:1173714-1173794 25 1.76e-04 AAAGCGGGTG CGGGGTCA CCAAGGGGCT chr6:33263565-33263645 11 1.76e-04 CATAGTCAAG TGAGGTCA GCCTTCCAAT chr8:28747338-28747418 4 2.03e-04 CCA AAAGGTTA TAGCATCACC chr8:13082071-13082151 29 2.03e-04 AGGGGTGGTC AAAGGTTA AAGGTGAAAG chr2:132560972-132561052 62 2.17e-04 ggttaggggt tagggtca ggggttaggg chr2:3381137-3381217 30 2.36e-04 gtgataaCTT CCAGGTCA GAAGTCATGT chr19:51403009-51403089 24 2.36e-04 gcagtaactt ccaggtca ttggcatgga chr19:6313533-6313613 57 2.36e-04 tctactactt ccaggtca gtcctttcaa chr9:116036893-116036973 17 2.61e-04 tgctggctgt agaggtta aagggcacag chr19:42937873-42937953 8 2.81e-04 AGAGAGC TGGGGTCA TGGTGATGCC chr19:1068251-1068331 51 2.81e-04 TTGACCCCTG TGGGGTCA GGGTGATGGT chr6:169852562-169852642 73 2.81e-04 GAGCCGTGCG TGGGGTCA chr2:240206802-240206882 28 2.88e-04 ggccaggttc aaagttca aagttcaaag chr19:51963859-51963939 42 2.88e-04 cttcctggac aaagttca ccacaaggga chrX:43138660-43138740 47 3.19e-04 CCATGGAGGA GGAGGTCA GCGGAGTCTT chr19:19477708-19477788 6 3.19e-04 CCCTA AAGGGTTA AGCACAAACT chr5:148745147-148745227 53 3.19e-04 TGGGTGAAGA AAGGGTTA TGAACTATGA chr3:52479325-52479405 70 3.19e-04 AGCCTGGAAG GGAGGTCA GGG chr19:3339043-3339123 48 3.33e-04 GTCAGAGGGC AAAGGGCA AAGGCCAAGG chr22:44351210-44351290 27 3.73e-04 GTGTGAACAT CCGGGTCA CAGGCGCATA chr9:74526516-74526596 32 3.73e-04 TTTGTTTCTT CCGGGTCA TTGACAGAAG chr2:187867870-187867950 64 3.73e-04 GCGTGATCTT CCGGGTCA GGGCTGAGG chr4:144106077-144106157 3 3.73e-04 AT CCGGGTCA AAGGGTGTCG chr3:14316087-14316167 47 3.73e-04 gtgataactt ccgggtca tcgggttgtt chr19:1874639-1874719 59 3.73e-04 AGAAACACTT CCGGGTCA GCCGAGAAAT chr20:43858260-43858340 70 3.73e-04 GCTGGTGCTT CCGGGTCA AGT chr14:21458055-21458135 59 4.13e-04 CGTTGGGACT GAGGGTCA CAGGCACCTG chr17:1371229-1371309 5 4.13e-04 GGTC GAGGGTCA GAGCAGGGCC chr11:1229414-1229494 46 4.13e-04 GTCAGAGTTC AGAGTTCA CTCACCACTG chr20:62918398-62918478 49 4.28e-04 gttaggggtt aggggtta gggttagggt chr2:70528454-70528534 28 4.48e-04 AAATTCCACC AGAGGGCA GCCGACCCAC chr13:50018450-50018530 52 4.48e-04 CTTCCCGGCC AGAGGGCA CCTGCGCTCG chr12:498785-498865 21 4.48e-04 GTAATGCCCC AGAGGGCA GAGGTTGTGC chr12:95467296-95467376 27 5.01e-04 GGTATTTCTG GGGGGTCA GAGTTCGTGA chr2:219433430-219433510 22 5.31e-04 CCTAAATCTT AAGGGGCA AAGGACATAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARRGGTCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:238969349-238969429 1e-05 35_[+2]_37 chr20:35513905-35513985 1e-05 35_[+2]_37 chr3:49195700-49195780 1e-05 50_[+2]_22 chr9:38195850-38195930 1e-05 56_[+2]_16 chr11:47490307-47490387 1e-05 9_[+2]_63 chr5:67721029-67721109 1e-05 28_[+2]_44 chr1:910309-910389 1e-05 [+2]_72 chr1:183905299-183905379 1e-05 55_[+2]_17 chr7:72321485-72321565 1e-05 72_[+2] chr11:64073581-64073661 1e-05 46_[+2]_26 chr11:72490890-72490970 1e-05 53_[+2]_19 chr8:28102229-28102309 1e-05 45_[+2]_27 chr19:49136792-49136872 1e-05 55_[+2]_17 chr10:103815480-10381556 1e-05 41_[+2]_31 chr11:76316945-76317025 1e-05 50_[+2]_22 chr19:19745174-19745254 1e-05 43_[+2]_29 chr19:10197296-10197376 1e-05 47_[+2]_25 chr1:27933996-27934076 1e-05 28_[+2]_44 chr3:52485708-52485788 2.5e-05 67_[+2]_5 chr17:6374166-6374246 2.5e-05 70_[+2]_2 chr11:3188173-3188253 2.5e-05 31_[+2]_41 chr4:8703459-8703539 2.5e-05 49_[+2]_23 chr16:30640150-30640230 2.5e-05 62_[+2]_10 chr19:51041196-51041276 2.5e-05 60_[+2]_12 chr22:47158720-47158800 2.5e-05 64_[+2]_8 chr8:145011956-145012036 2.5e-05 30_[+2]_42 chr19:10102615-10102695 2.5e-05 37_[+2]_35 chr16:70669386-70669466 2.5e-05 47_[+2]_25 chr19:10416121-10416201 2.5e-05 48_[+2]_24 chr2:3704365-3704445 2.5e-05 52_[+2]_20 chr8:101738761-101738841 3.9e-05 44_[+2]_28 chrX:155249505-155249585 3.9e-05 45_[+2]_27 chr9:141127437-141127517 3.9e-05 32_[+2]_40 chr12:56282520-56282600 3.9e-05 28_[+2]_44 chr1:1175296-1175376 3.9e-05 42_[+2]_30 chr16:90188403-90188483 3.9e-05 35_[+2]_37 chr3:197901024-197901104 3.9e-05 31_[+2]_41 chr21:46738916-46738996 5.3e-05 17_[+2]_55 chr1:18458702-18458782 5.3e-05 69_[+2]_3 chr11:71170958-71171038 7.3e-05 59_[+2]_13 chr11:118868824-11886890 7.3e-05 10_[+2]_62 chr18:54318804-54318884 7.3e-05 69_[+2]_3 chr15:48623593-48623673 9.2e-05 23_[+2]_49 chr10:102747266-10274734 9.2e-05 38_[+2]_34 chr20:61669293-61669373 9.2e-05 44_[+2]_28 chr11:65319166-65319246 0.00011 68_[+2]_4 chr5:131516832-131516912 0.00011 49_[+2]_23 chr2:58274346-58274426 0.00014 56_[+2]_16 chr5:176981607-176981687 0.00014 60_[+2]_12 chr5:49723-49803 0.00014 70_[+2]_2 chr17:61920532-61920612 0.00014 31_[+2]_41 chr15:102520971-10252105 0.00014 35_[+2]_37 chr9:37568675-37568755 0.00014 43_[+2]_29 chr2:230786945-230787025 0.00018 36_[+2]_36 chr16:67700650-67700730 0.00018 21_[+2]_51 chr12:56223392-56223472 0.00018 32_[+2]_40 chr17:1227643-1227723 0.00018 27_[+2]_45 chr16:30392775-30392855 0.00018 39_[+2]_33 chr8:29154036-29154116 0.00018 15_[+2]_57 chr20:62331303-62331383 0.00018 40_[+2]_32 chr19:1173714-1173794 0.00018 24_[+2]_48 chr6:33263565-33263645 0.00018 10_[+2]_62 chr8:28747338-28747418 0.0002 3_[+2]_69 chr8:13082071-13082151 0.0002 28_[+2]_44 chr2:132560972-132561052 0.00022 61_[+2]_11 chr2:3381137-3381217 0.00024 29_[+2]_43 chr19:51403009-51403089 0.00024 23_[+2]_49 chr19:6313533-6313613 0.00024 56_[+2]_16 chr9:116036893-116036973 0.00026 16_[+2]_56 chr19:42937873-42937953 0.00028 7_[+2]_65 chr19:1068251-1068331 0.00028 50_[+2]_22 chr6:169852562-169852642 0.00028 72_[+2] chr2:240206802-240206882 0.00029 27_[+2]_45 chr19:51963859-51963939 0.00029 41_[+2]_31 chrX:43138660-43138740 0.00032 46_[+2]_26 chr19:19477708-19477788 0.00032 5_[+2]_67 chr5:148745147-148745227 0.00032 52_[+2]_20 chr3:52479325-52479405 0.00032 69_[+2]_3 chr19:3339043-3339123 0.00033 47_[+2]_25 chr22:44351210-44351290 0.00037 26_[+2]_46 chr9:74526516-74526596 0.00037 31_[+2]_41 chr2:187867870-187867950 0.00037 63_[+2]_9 chr4:144106077-144106157 0.00037 2_[+2]_70 chr3:14316087-14316167 0.00037 46_[+2]_26 chr19:1874639-1874719 0.00037 58_[+2]_14 chr20:43858260-43858340 0.00037 69_[+2]_3 chr14:21458055-21458135 0.00041 58_[+2]_14 chr17:1371229-1371309 0.00041 4_[+2]_68 chr11:1229414-1229494 0.00041 45_[+2]_27 chr20:62918398-62918478 0.00043 48_[+2]_24 chr2:70528454-70528534 0.00045 27_[+2]_45 chr13:50018450-50018530 0.00045 51_[+2]_21 chr12:498785-498865 0.00045 20_[+2]_52 chr12:95467296-95467376 0.0005 26_[+2]_46 chr2:219433430-219433510 0.00053 21_[+2]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARRGGTCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ARRGGTCA width=8 seqs=95 chr2:238969349-238969429 ( 36) AAAGGTCA 1 chr20:35513905-35513985 ( 36) AAAGGTCA 1 chr3:49195700-49195780 ( 51) AAAGGTCA 1 chr9:38195850-38195930 ( 57) AAAGGTCA 1 chr11:47490307-47490387 ( 10) AAAGGTCA 1 chr5:67721029-67721109 ( 29) AAAGGTCA 1 chr1:910309-910389 ( 1) AAAGGTCA 1 chr1:183905299-183905379 ( 56) AAAGGTCA 1 chr7:72321485-72321565 ( 73) AAAGGTCA 1 chr11:64073581-64073661 ( 47) AAAGGTCA 1 chr11:72490890-72490970 ( 54) AAAGGTCA 1 chr8:28102229-28102309 ( 46) AAAGGTCA 1 chr19:49136792-49136872 ( 56) AAAGGTCA 1 chr10:103815480-10381556 ( 42) AAAGGTCA 1 chr11:76316945-76317025 ( 51) AAAGGTCA 1 chr19:19745174-19745254 ( 44) AAAGGTCA 1 chr19:10197296-10197376 ( 48) AAAGGTCA 1 chr1:27933996-27934076 ( 29) AAAGGTCA 1 chr3:52485708-52485788 ( 68) AGAGGTCA 1 chr17:6374166-6374246 ( 71) AGAGGTCA 1 chr11:3188173-3188253 ( 32) AGAGGTCA 1 chr4:8703459-8703539 ( 50) AGAGGTCA 1 chr16:30640150-30640230 ( 63) AGAGGTCA 1 chr19:51041196-51041276 ( 61) AGAGGTCA 1 chr22:47158720-47158800 ( 65) AGAGGTCA 1 chr8:145011956-145012036 ( 31) AGAGGTCA 1 chr19:10102615-10102695 ( 38) AGAGGTCA 1 chr16:70669386-70669466 ( 48) AGAGGTCA 1 chr19:10416121-10416201 ( 49) AGAGGTCA 1 chr2:3704365-3704445 ( 53) AGAGGTCA 1 chr8:101738761-101738841 ( 45) AAGGGTCA 1 chrX:155249505-155249585 ( 46) AAGGGTCA 1 chr9:141127437-141127517 ( 33) AAGGGTCA 1 chr12:56282520-56282600 ( 29) AAGGGTCA 1 chr1:1175296-1175376 ( 43) AAGGGTCA 1 chr16:90188403-90188483 ( 36) AAGGGTCA 1 chr3:197901024-197901104 ( 32) AAGGGTCA 1 chr21:46738916-46738996 ( 18) CAAGGTCA 1 chr1:18458702-18458782 ( 70) CAAGGTCA 1 chr11:71170958-71171038 ( 60) AGGGGTCA 1 chr11:118868824-11886890 ( 11) AGGGGTCA 1 chr18:54318804-54318884 ( 70) AGGGGTCA 1 chr15:48623593-48623673 ( 24) CGAGGTCA 1 chr10:102747266-10274734 ( 39) CGAGGTCA 1 chr20:61669293-61669373 ( 45) CGAGGTCA 1 chr11:65319166-65319246 ( 69) ACAGGTCA 1 chr5:131516832-131516912 ( 50) ACAGGTCA 1 chr2:58274346-58274426 ( 57) CAGGGTCA 1 chr5:176981607-176981687 ( 61) TAAGGTCA 1 chr5:49723-49803 ( 71) CAGGGTCA 1 chr17:61920532-61920612 ( 32) TAAGGTCA 1 chr15:102520971-10252105 ( 36) CAGGGTCA 1 chr9:37568675-37568755 ( 44) TAAGGTCA 1 chr2:230786945-230787025 ( 37) CGGGGTCA 1 chr16:67700650-67700730 ( 22) CGGGGTCA 1 chr12:56223392-56223472 ( 33) CGGGGTCA 1 chr17:1227643-1227723 ( 28) CGGGGTCA 1 chr16:30392775-30392855 ( 40) TGAGGTCA 1 chr8:29154036-29154116 ( 16) CGGGGTCA 1 chr20:62331303-62331383 ( 41) CGGGGTCA 1 chr19:1173714-1173794 ( 25) CGGGGTCA 1 chr6:33263565-33263645 ( 11) TGAGGTCA 1 chr8:28747338-28747418 ( 4) AAAGGTTA 1 chr8:13082071-13082151 ( 29) AAAGGTTA 1 chr2:132560972-132561052 ( 62) TAGGGTCA 1 chr2:3381137-3381217 ( 30) CCAGGTCA 1 chr19:51403009-51403089 ( 24) CCAGGTCA 1 chr19:6313533-6313613 ( 57) CCAGGTCA 1 chr9:116036893-116036973 ( 17) AGAGGTTA 1 chr19:42937873-42937953 ( 8) TGGGGTCA 1 chr19:1068251-1068331 ( 51) TGGGGTCA 1 chr6:169852562-169852642 ( 73) TGGGGTCA 1 chr2:240206802-240206882 ( 28) AAAGTTCA 1 chr19:51963859-51963939 ( 42) AAAGTTCA 1 chrX:43138660-43138740 ( 47) GGAGGTCA 1 chr19:19477708-19477788 ( 6) AAGGGTTA 1 chr5:148745147-148745227 ( 53) AAGGGTTA 1 chr3:52479325-52479405 ( 70) GGAGGTCA 1 chr19:3339043-3339123 ( 48) AAAGGGCA 1 chr22:44351210-44351290 ( 27) CCGGGTCA 1 chr9:74526516-74526596 ( 32) CCGGGTCA 1 chr2:187867870-187867950 ( 64) CCGGGTCA 1 chr4:144106077-144106157 ( 3) CCGGGTCA 1 chr3:14316087-14316167 ( 47) CCGGGTCA 1 chr19:1874639-1874719 ( 59) CCGGGTCA 1 chr20:43858260-43858340 ( 70) CCGGGTCA 1 chr14:21458055-21458135 ( 59) GAGGGTCA 1 chr17:1371229-1371309 ( 5) GAGGGTCA 1 chr11:1229414-1229494 ( 46) AGAGTTCA 1 chr20:62918398-62918478 ( 49) AGGGGTTA 1 chr2:70528454-70528534 ( 28) AGAGGGCA 1 chr13:50018450-50018530 ( 52) AGAGGGCA 1 chr12:498785-498865 ( 21) AGAGGGCA 1 chr12:95467296-95467376 ( 27) GGGGGTCA 1 chr2:219433430-219433510 ( 22) AAGGGGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARRGGTCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.16214 E= 9.1e-054 148 -10 -249 -115 113 -116 48 -1321 150 -1321 44 -1321 -1321 -1321 176 -1321 -1321 -1321 171 -274 -1321 -1321 -249 217 -1321 173 -1321 -174 224 -1321 -1321 -1321 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARRGGTCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 95 E= 9.1e-054 0.589474 0.263158 0.052632 0.094737 0.463158 0.126316 0.410526 0.000000 0.600000 0.000000 0.400000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.968421 0.031579 0.000000 0.000000 0.052632 0.947368 0.000000 0.936842 0.000000 0.063158 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARRGGTCA MEME-2 regular expression -------------------------------------------------------------------------------- [AC][AG][AG]GGTCA -------------------------------------------------------------------------------- Time 8.83 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCGGAAG MEME-3 width = 8 sites = 69 llr = 578 E-value = 4.5e-041 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCGGAAG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 213::aa2 pos.-specific C 797::::: probability G 1::aa::8 matrix T ::1::::: bits 2.2 ** 2.0 ** 1.8 **** 1.6 **** Relative 1.3 * **** Entropy 1.1 * ***** (12.1 bits) 0.9 * ***** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCCGGAAG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGGAAG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr22:38349644-38349724 20 2.56e-05 TGTCCTGCCT CCCGGAAG TGATTTCCTC chr10:27443296-27443376 25 2.56e-05 GACAATCCGC CCCGGAAG GCGAGGCGCT chr2:238969349-238969429 53 2.56e-05 ACGGGGCTCC CCCGGAAG TGAAAGTGCG chrX:7895721-7895801 31 2.56e-05 TTTTCTGTGC CCCGGAAG TGCCTTACCC chr22:39898308-39898388 41 2.56e-05 AAGGTCGTGT CCCGGAAG TGAAGGGGCC chr7:39663141-39663221 16 2.56e-05 TCCCCAGCGC CCCGGAAG TGATCTGTGG chr16:14013997-14014077 11 2.56e-05 TCGGCTGCGA CCCGGAAG AGCTTCCATG chr20:39542021-39542101 17 2.56e-05 CTAGGAGTGA CCCGGAAG TCCATGCCAC chr2:100794761-100794841 60 2.56e-05 atggcaacaa cccggaag ttactgcccc chr14:35761567-35761647 18 2.56e-05 CGGCTGGTAC CCCGGAAG CAGTCGCTGC chr14:75469604-75469684 17 2.56e-05 CCTCGCCCGC CCCGGAAG TGCAAACTGT chr4:123844199-123844279 21 2.56e-05 TGACTTCTGC CCCGGAAG TTTTTCTCTC chr12:69864126-69864206 26 2.56e-05 CCCCCGCTCC CCCGGAAG TGCTTTTCCA chr19:6393192-6393272 24 2.56e-05 GGCCGCCTAA CCCGGAAG CGAAACCCTC chr2:152144854-152144934 10 2.56e-05 aaatgtgac cccggaag aactttcaga chr9:14993247-14993327 28 2.56e-05 GGCTTTTGAA CCCGGAAG CAGTTGGCTG chr2:232826377-232826457 35 2.56e-05 GCGCCCGTGA CCCGGAAG AGCATTCTCC chr1:78245275-78245355 43 2.56e-05 CACTCCTGAC CCCGGAAG GACTCCGCCT chr19:52956759-52956839 60 2.56e-05 TTCCTGAAGA CCCGGAAG CCGATCGCGT chr8:21867731-21867811 17 2.56e-05 GCGCTGCAGC CCCGGAAG TAATTTCGCG chr11:59382697-59382777 64 2.56e-05 GCGACAGCGC CCCGGAAG CAGTTACCT chr4:187762364-187762444 33 2.56e-05 AATTCTTCAC CCCGGAAG TGAATGCTTG chr14:93460595-93460675 28 2.56e-05 TAAAACCTCA CCCGGAAG CAGATCCACT chr12:48551223-48551303 67 2.56e-05 CAAGGCGTGA CCCGGAAG CAGAAG chr4:1044894-1044974 15 2.56e-05 CCACTGTTGA CCCGGAAG TGTTTTGCCT chrX:54208902-54208982 36 2.56e-05 CTCACCTTGA CCCGGAAG CGGATGAGTG chr8:144816249-144816329 26 2.56e-05 TGACCCTCGC CCCGGAAG TCGGGGTGAC chr7:140469796-140469876 37 4.48e-05 CAGAAATGAC CCAGGAAG Caattcctct chr9:38195850-38195930 19 4.48e-05 gatgcaaccg ccaggaag catgacaacg chr19:39536879-39536959 48 4.48e-05 cccttttcta ccaggaag ttatctccca chr20:43767647-43767727 45 4.48e-05 CCTTTCACCT CCAGGAAG AGATAACGTG chr19:45811711-45811791 54 4.48e-05 TTCACCCACA CCAGGAAG CTCTTGTTGT chr17:37844260-37844340 72 6.40e-05 TTCCGGAGTA ACCGGAAG T chr1:7887443-7887523 30 6.40e-05 CCGGAACTGC ACCGGAAG GCCTGCATGG chrX:153775788-153775868 44 6.40e-05 CAGCTATGAC ACCGGAAG CCGGAAGCGT chr19:19477708-19477788 44 6.40e-05 CCTGTCGTGA ACCGGAAG TGTATCTCCC chr3:119395972-119396052 16 6.40e-05 gggcagaggC ACCGGAAG GCACAGGCCG chr16:30392775-30392855 8 6.40e-05 TTTCACC ACCGGAAG CCAGCTGGGT chr20:42087857-42087937 51 6.40e-05 GGCTGACCTT ACCGGAAG CCATGACGAC chr5:93954302-93954382 16 8.23e-05 CTGACAACCA CCCGGAAA TGGTACTATC chrX:53024683-53024763 41 8.23e-05 CACTCCGCGC CCCGGAAA AGCTTAGTCG chr14:75593742-75593822 26 8.23e-05 TGCCCCCCGA CCCGGAAA CAGTTCTCTG chr14:24912085-24912165 31 8.23e-05 TTCTCGGCGA CCCGGAAA AACTTGTAAA chr7:6865934-6866014 11 8.23e-05 TCGCCGCAGG CCCGGAAA AAGAATCCGC chr1:101360723-101360803 44 1.16e-04 CCGGGGATGA CCTGGAAG CGAAAGAGAC chr21:46738916-46738996 65 1.16e-04 GCAGAGGGAG ACAGGAAG GGACACCC chr9:125675575-125675655 20 1.16e-04 ATGGACTTAG CCTGGAAG AAAACACATC chr2:102798602-102798682 11 1.16e-04 GAACCTTTGA CCTGGAAG TGATCCCAAG chr3:121468760-121468840 69 1.16e-04 CTGGGGAGGG ACAGGAAG TGTC chr2:240206802-240206882 11 1.16e-04 ttcatggcaa cctggaag gccaggttca chr20:43858260-43858340 40 1.16e-04 GTGGTTGCTT CCTGGAAG TGAAAGAAAA chr19:10416121-10416201 16 1.16e-04 TCTGGGTCCG ACAGGAAG CACAGCGCCG chr3:52479325-52479405 62 1.16e-04 GGGGAGAGAG CCTGGAAG GGAGGTCAGG chr7:5938242-5938322 11 1.30e-04 ACAAACTCGG CCAGGAAA CAGCCACCCG chr19:44405944-44406024 18 1.70e-04 CAGCTCGGAC ACCGGAAA AAGATCTAGA chr8:88886283-88886363 3 1.89e-04 GG CACGGAAG AACTTCCCGC chr4:185334871-185334951 72 2.24e-04 ACCCTCCGAA GCAGGAAG T chr22:36822423-36822503 20 2.24e-04 TGGAGGCCCA GCAGGAAG TGCAGTTTCC chr17:72355019-72355099 39 2.24e-04 tttgggattt gcaggaag gctgattaaa chr8:28102229-28102309 8 2.24e-04 CGGCTGA GCAGGAAG AGGAGGAGGG chr8:21897270-21897350 72 2.24e-04 CTGTTTTTCA GCAGGAAG A chr1:27691013-27691093 7 2.48e-04 GAGGCA ACAGGAAA CAGAGGAATA chr16:30640150-30640230 25 2.48e-04 GCTATGAGGC ACAGGAAA TGGAATAGGT chr1:155178998-155179078 11 2.62e-04 CAGAAGCACA CAAGGAAG TGTTTCCGGG chr5:67721029-67721109 49 2.62e-04 ggtgaaagtt caaggaag gaagttcagg chr19:37178342-37178422 67 2.96e-04 GTAGTCCAAG GCCGGAAA CGCCCG chr1:3663914-3663994 29 3.15e-04 ACAACCCGGA TCCGGAAG CGCGGGGTCG chr1:226496212-226496292 24 3.49e-04 AACCCTCTGA CACGGAAA CACTTCCAGG chr10:103815480-10381556 54 3.68e-04 AGGTCAGCAC CTCGGAAG CCAGAAGGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGGAAG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:38349644-38349724 2.6e-05 19_[+3]_53 chr10:27443296-27443376 2.6e-05 24_[+3]_48 chr2:238969349-238969429 2.6e-05 52_[+3]_20 chrX:7895721-7895801 2.6e-05 30_[+3]_42 chr22:39898308-39898388 2.6e-05 40_[+3]_32 chr7:39663141-39663221 2.6e-05 15_[+3]_57 chr16:14013997-14014077 2.6e-05 10_[+3]_62 chr20:39542021-39542101 2.6e-05 16_[+3]_56 chr2:100794761-100794841 2.6e-05 59_[+3]_13 chr14:35761567-35761647 2.6e-05 17_[+3]_55 chr14:75469604-75469684 2.6e-05 16_[+3]_56 chr4:123844199-123844279 2.6e-05 20_[+3]_52 chr12:69864126-69864206 2.6e-05 25_[+3]_47 chr19:6393192-6393272 2.6e-05 23_[+3]_49 chr2:152144854-152144934 2.6e-05 9_[+3]_63 chr9:14993247-14993327 2.6e-05 27_[+3]_45 chr2:232826377-232826457 2.6e-05 34_[+3]_38 chr1:78245275-78245355 2.6e-05 42_[+3]_30 chr19:52956759-52956839 2.6e-05 59_[+3]_13 chr8:21867731-21867811 2.6e-05 16_[+3]_56 chr11:59382697-59382777 2.6e-05 63_[+3]_9 chr4:187762364-187762444 2.6e-05 32_[+3]_40 chr14:93460595-93460675 2.6e-05 27_[+3]_45 chr12:48551223-48551303 2.6e-05 66_[+3]_6 chr4:1044894-1044974 2.6e-05 14_[+3]_58 chrX:54208902-54208982 2.6e-05 35_[+3]_37 chr8:144816249-144816329 2.6e-05 25_[+3]_47 chr7:140469796-140469876 4.5e-05 36_[+3]_36 chr9:38195850-38195930 4.5e-05 18_[+3]_54 chr19:39536879-39536959 4.5e-05 47_[+3]_25 chr20:43767647-43767727 4.5e-05 44_[+3]_28 chr19:45811711-45811791 4.5e-05 53_[+3]_19 chr17:37844260-37844340 6.4e-05 71_[+3]_1 chr1:7887443-7887523 6.4e-05 29_[+3]_43 chrX:153775788-153775868 6.4e-05 43_[+3]_29 chr19:19477708-19477788 6.4e-05 43_[+3]_29 chr3:119395972-119396052 6.4e-05 15_[+3]_57 chr16:30392775-30392855 6.4e-05 7_[+3]_65 chr20:42087857-42087937 6.4e-05 50_[+3]_22 chr5:93954302-93954382 8.2e-05 15_[+3]_57 chrX:53024683-53024763 8.2e-05 40_[+3]_32 chr14:75593742-75593822 8.2e-05 25_[+3]_47 chr14:24912085-24912165 8.2e-05 30_[+3]_42 chr7:6865934-6866014 8.2e-05 10_[+3]_62 chr1:101360723-101360803 0.00012 43_[+3]_29 chr21:46738916-46738996 0.00012 64_[+3]_8 chr9:125675575-125675655 0.00012 19_[+3]_53 chr2:102798602-102798682 0.00012 10_[+3]_62 chr3:121468760-121468840 0.00012 68_[+3]_4 chr2:240206802-240206882 0.00012 10_[+3]_62 chr20:43858260-43858340 0.00012 39_[+3]_33 chr19:10416121-10416201 0.00012 15_[+3]_57 chr3:52479325-52479405 0.00012 61_[+3]_11 chr7:5938242-5938322 0.00013 10_[+3]_62 chr19:44405944-44406024 0.00017 17_[+3]_55 chr8:88886283-88886363 0.00019 2_[+3]_70 chr4:185334871-185334951 0.00022 71_[+3]_1 chr22:36822423-36822503 0.00022 19_[+3]_53 chr17:72355019-72355099 0.00022 38_[+3]_34 chr8:28102229-28102309 0.00022 7_[+3]_65 chr8:21897270-21897350 0.00022 71_[+3]_1 chr1:27691013-27691093 0.00025 6_[+3]_66 chr16:30640150-30640230 0.00025 24_[+3]_48 chr1:155178998-155179078 0.00026 10_[+3]_62 chr5:67721029-67721109 0.00026 48_[+3]_24 chr19:37178342-37178422 0.0003 66_[+3]_6 chr1:3663914-3663994 0.00031 28_[+3]_44 chr1:226496212-226496292 0.00035 23_[+3]_49 chr10:103815480-10381556 0.00037 53_[+3]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGGAAG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCGGAAG width=8 seqs=69 chr22:38349644-38349724 ( 20) CCCGGAAG 1 chr10:27443296-27443376 ( 25) CCCGGAAG 1 chr2:238969349-238969429 ( 53) CCCGGAAG 1 chrX:7895721-7895801 ( 31) CCCGGAAG 1 chr22:39898308-39898388 ( 41) CCCGGAAG 1 chr7:39663141-39663221 ( 16) CCCGGAAG 1 chr16:14013997-14014077 ( 11) CCCGGAAG 1 chr20:39542021-39542101 ( 17) CCCGGAAG 1 chr2:100794761-100794841 ( 60) CCCGGAAG 1 chr14:35761567-35761647 ( 18) CCCGGAAG 1 chr14:75469604-75469684 ( 17) CCCGGAAG 1 chr4:123844199-123844279 ( 21) CCCGGAAG 1 chr12:69864126-69864206 ( 26) CCCGGAAG 1 chr19:6393192-6393272 ( 24) CCCGGAAG 1 chr2:152144854-152144934 ( 10) CCCGGAAG 1 chr9:14993247-14993327 ( 28) CCCGGAAG 1 chr2:232826377-232826457 ( 35) CCCGGAAG 1 chr1:78245275-78245355 ( 43) CCCGGAAG 1 chr19:52956759-52956839 ( 60) CCCGGAAG 1 chr8:21867731-21867811 ( 17) CCCGGAAG 1 chr11:59382697-59382777 ( 64) CCCGGAAG 1 chr4:187762364-187762444 ( 33) CCCGGAAG 1 chr14:93460595-93460675 ( 28) CCCGGAAG 1 chr12:48551223-48551303 ( 67) CCCGGAAG 1 chr4:1044894-1044974 ( 15) CCCGGAAG 1 chrX:54208902-54208982 ( 36) CCCGGAAG 1 chr8:144816249-144816329 ( 26) CCCGGAAG 1 chr7:140469796-140469876 ( 37) CCAGGAAG 1 chr9:38195850-38195930 ( 19) CCAGGAAG 1 chr19:39536879-39536959 ( 48) CCAGGAAG 1 chr20:43767647-43767727 ( 45) CCAGGAAG 1 chr19:45811711-45811791 ( 54) CCAGGAAG 1 chr17:37844260-37844340 ( 72) ACCGGAAG 1 chr1:7887443-7887523 ( 30) ACCGGAAG 1 chrX:153775788-153775868 ( 44) ACCGGAAG 1 chr19:19477708-19477788 ( 44) ACCGGAAG 1 chr3:119395972-119396052 ( 16) ACCGGAAG 1 chr16:30392775-30392855 ( 8) ACCGGAAG 1 chr20:42087857-42087937 ( 51) ACCGGAAG 1 chr5:93954302-93954382 ( 16) CCCGGAAA 1 chrX:53024683-53024763 ( 41) CCCGGAAA 1 chr14:75593742-75593822 ( 26) CCCGGAAA 1 chr14:24912085-24912165 ( 31) CCCGGAAA 1 chr7:6865934-6866014 ( 11) CCCGGAAA 1 chr1:101360723-101360803 ( 44) CCTGGAAG 1 chr21:46738916-46738996 ( 65) ACAGGAAG 1 chr9:125675575-125675655 ( 20) CCTGGAAG 1 chr2:102798602-102798682 ( 11) CCTGGAAG 1 chr3:121468760-121468840 ( 69) ACAGGAAG 1 chr2:240206802-240206882 ( 11) CCTGGAAG 1 chr20:43858260-43858340 ( 40) CCTGGAAG 1 chr19:10416121-10416201 ( 16) ACAGGAAG 1 chr3:52479325-52479405 ( 62) CCTGGAAG 1 chr7:5938242-5938322 ( 11) CCAGGAAA 1 chr19:44405944-44406024 ( 18) ACCGGAAA 1 chr8:88886283-88886363 ( 3) CACGGAAG 1 chr4:185334871-185334951 ( 72) GCAGGAAG 1 chr22:36822423-36822503 ( 20) GCAGGAAG 1 chr17:72355019-72355099 ( 39) GCAGGAAG 1 chr8:28102229-28102309 ( 8) GCAGGAAG 1 chr8:21897270-21897350 ( 72) GCAGGAAG 1 chr1:27691013-27691093 ( 7) ACAGGAAA 1 chr16:30640150-30640230 ( 25) ACAGGAAA 1 chr1:155178998-155179078 ( 11) CAAGGAAG 1 chr5:67721029-67721109 ( 49) CAAGGAAG 1 chr19:37178342-37178422 ( 67) GCCGGAAA 1 chr1:3663914-3663994 ( 29) TCCGGAAG 1 chr1:226496212-226496292 ( 24) CACGGAAA 1 chr10:103815480-10381556 ( 54) CTCGGAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGGAAG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.85237 E= 4.5e-041 -17 133 -176 -386 -187 172 -1275 -386 30 121 -1275 -128 -1275 -1275 176 -1275 -1275 -1275 176 -1275 224 -1275 -1275 -1275 224 -1275 -1275 -1275 -41 -1275 151 -1275 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGGAAG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 69 E= 4.5e-041 0.188406 0.710145 0.086957 0.014493 0.057971 0.927536 0.000000 0.014493 0.260870 0.652174 0.000000 0.086957 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.159420 0.000000 0.840580 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGGAAG MEME-3 regular expression -------------------------------------------------------------------------------- CC[CA]GGAAG -------------------------------------------------------------------------------- Time 12.40 secs. ******************************************************************************** ******************************************************************************** MOTIF CTTCCGGG MEME-4 width = 8 sites = 43 llr = 374 E-value = 6.0e-017 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTTCCGGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::1 pos.-specific C 9::aa::: probability G :::::7a8 matrix T 1aa::3:1 bits 2.2 ** 2.0 ** 1.8 **** 1.6 **** * Relative 1.3 **** * Entropy 1.1 ***** * (12.5 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTTCCGGG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTCCGGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr5:93954302-93954382 35 2.56e-05 GGTACTATCG CTTCCGGG GCTGCCTAGC chr10:27443296-27443376 55 2.56e-05 CTCAACAGTA CTTCCGGG GCAAGTGAGC chr17:1227643-1227723 53 2.56e-05 CTCCGCCCTG CTTCCGGG GTCATCTGCC chr20:43859404-43859484 48 2.56e-05 ACAGATGGTG CTTCCGGG TTAAGCGGAG chr10:22994062-22994142 65 2.56e-05 ggcagtaaca cttccggg tcgagtgt chr2:102798602-102798682 45 2.56e-05 TTGGCTTCTG CTTCCGGG TCTGGGAAGG chr14:35761567-35761647 38 2.56e-05 GTCGCTGCAA CTTCCGGG AGGTGCTTGT chr3:100120007-100120087 24 2.56e-05 GCGGAAATCA CTTCCGGG TTAAGGGAAA chr2:39103036-39103116 72 2.56e-05 CGCGTATTCG CTTCCGGG T chr3:178865834-178865914 67 2.56e-05 TGCGCATCTG CTTCCGGG GGATTG chr5:143550173-143550253 46 2.56e-05 CAAAGAACGG CTTCCGGG GCACGCCCGC chr19:51403009-51403089 54 2.56e-05 ggagcagtaa cttccggg tcactgccat chr18:61157727-61157807 70 2.56e-05 GAGGGATACA CTTCCGGG GCA chr13:41837662-41837742 71 2.56e-05 TGGTTCACTT CTTCCGGG TT chr5:49723-49803 11 2.56e-05 gggtacagca cttccggg ttagggtcag chrX:70208422-70208502 39 2.56e-05 agggtggtaa cttccggg ttgttgccat chrX:2547782-2547862 63 4.40e-05 AATTGTAGCA CTTCCTGG TTCATACGGA chr17:37385600-37385680 67 4.40e-05 TCTCGATGTC CTTCCTGG CCTGCA chrX:2549623-2549703 6 4.40e-05 TAGCA CTTCCTGG TTCATAGGGA chrX:2550344-2550424 18 4.40e-05 AATTGTAGCA CTTCCTGG TTCATAGGGA chr15:83781879-83781959 73 4.40e-05 ATGCTAGCTC CTTCCTGG chrX:2549044-2549124 17 4.40e-05 CATTGCCACA CTTCCTGG TTCATCCAGA chrX:2549331-2549411 41 4.40e-05 AATAGTAGCA CTTCCTGG TTCATAGGGA chr17:80489022-80489102 21 4.40e-05 ACATTGTACA CTTCCTGG GGTTGTAGCC chr19:51963859-51963939 32 4.40e-05 tccctgtttg cttcctgg acaaagttca chr17:37844260-37844340 61 6.23e-05 GAAGCTTCCA CTTCCGGA GTAACCGGAA chr17:7218703-7218783 22 6.23e-05 CGGCCGAGTC CTTCCGGA GTCACGGCGG chrX:153775788-153775868 21 6.23e-05 TGTGTTTTTA CTTCCGGA TCCCACAGCT chr2:219433430-219433510 4 8.06e-05 GTC CTTCCGGT CCTAAATCTT chr11:134632369-13463244 12 8.06e-05 CCCGGTTTTC CTTCCGGT GCTGAGGATG chr12:498785-498865 38 8.06e-05 AGAGGTTGTG CTTCCGGT GAGGAGGGTC chr1:155178998-155179078 21 9.98e-05 CAAGGAAGTG TTTCCGGG ACAGAGGGTG chr6:109767370-109767450 71 9.98e-05 GGAGGCTCCA TTTCCGGG TC chr7:5938242-5938322 65 9.98e-05 GCGGATTCTT TTTCCGGG CCTGCGGC chr19:59069496-59069576 66 1.13e-04 CGCATTACCC CTTCCTGA CTCCCAC chr1:226496212-226496292 34 1.44e-04 CACGGAAACA CTTCCAGG GGTGGACACA chr10:50543569-50543649 27 1.44e-04 CTCTTGACTA CTTCCTGT GGGTCCTGAC chr11:62495846-62495926 68 1.44e-04 CTCCCTTCTA CTTCCAGG TCGGG chr17:72355019-72355099 65 1.96e-04 aatgcaactg attccggg ttaacagg chr10:103347951-10334803 66 1.96e-04 GCCAGAATAG CTTCCGAG TCAGCCG chr20:61669293-61669373 65 1.96e-04 CAGCATAGTG CTTCCGAG Gtcgctca chr9:74526516-74526596 55 2.22e-04 AGAAGCGTCA ATTCCTGG GAGTAGTTCG chr22:43485445-43485525 46 2.36e-04 GCTGCGACTA TTTCCGGA GTCAGACTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTCCGGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:93954302-93954382 2.6e-05 34_[+4]_38 chr10:27443296-27443376 2.6e-05 54_[+4]_18 chr17:1227643-1227723 2.6e-05 52_[+4]_20 chr20:43859404-43859484 2.6e-05 47_[+4]_25 chr10:22994062-22994142 2.6e-05 64_[+4]_8 chr2:102798602-102798682 2.6e-05 44_[+4]_28 chr14:35761567-35761647 2.6e-05 37_[+4]_35 chr3:100120007-100120087 2.6e-05 23_[+4]_49 chr2:39103036-39103116 2.6e-05 71_[+4]_1 chr3:178865834-178865914 2.6e-05 66_[+4]_6 chr5:143550173-143550253 2.6e-05 45_[+4]_27 chr19:51403009-51403089 2.6e-05 53_[+4]_19 chr18:61157727-61157807 2.6e-05 69_[+4]_3 chr13:41837662-41837742 2.6e-05 70_[+4]_2 chr5:49723-49803 2.6e-05 10_[+4]_62 chrX:70208422-70208502 2.6e-05 38_[+4]_34 chrX:2547782-2547862 4.4e-05 62_[+4]_10 chr17:37385600-37385680 4.4e-05 66_[+4]_6 chrX:2549623-2549703 4.4e-05 5_[+4]_67 chrX:2550344-2550424 4.4e-05 17_[+4]_55 chr15:83781879-83781959 4.4e-05 72_[+4] chrX:2549044-2549124 4.4e-05 16_[+4]_56 chrX:2549331-2549411 4.4e-05 40_[+4]_32 chr17:80489022-80489102 4.4e-05 20_[+4]_52 chr19:51963859-51963939 4.4e-05 31_[+4]_41 chr17:37844260-37844340 6.2e-05 60_[+4]_12 chr17:7218703-7218783 6.2e-05 21_[+4]_51 chrX:153775788-153775868 6.2e-05 20_[+4]_52 chr2:219433430-219433510 8.1e-05 3_[+4]_69 chr11:134632369-13463244 8.1e-05 11_[+4]_61 chr12:498785-498865 8.1e-05 37_[+4]_35 chr1:155178998-155179078 0.0001 20_[+4]_52 chr6:109767370-109767450 0.0001 70_[+4]_2 chr7:5938242-5938322 0.0001 64_[+4]_8 chr19:59069496-59069576 0.00011 65_[+4]_7 chr1:226496212-226496292 0.00014 33_[+4]_39 chr10:50543569-50543649 0.00014 26_[+4]_46 chr11:62495846-62495926 0.00014 67_[+4]_5 chr17:72355019-72355099 0.0002 64_[+4]_8 chr10:103347951-10334803 0.0002 65_[+4]_7 chr20:61669293-61669373 0.0002 64_[+4]_8 chr9:74526516-74526596 0.00022 54_[+4]_18 chr22:43485445-43485525 0.00024 45_[+4]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTCCGGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTTCCGGG width=8 seqs=43 chr5:93954302-93954382 ( 35) CTTCCGGG 1 chr10:27443296-27443376 ( 55) CTTCCGGG 1 chr17:1227643-1227723 ( 53) CTTCCGGG 1 chr20:43859404-43859484 ( 48) CTTCCGGG 1 chr10:22994062-22994142 ( 65) CTTCCGGG 1 chr2:102798602-102798682 ( 45) CTTCCGGG 1 chr14:35761567-35761647 ( 38) CTTCCGGG 1 chr3:100120007-100120087 ( 24) CTTCCGGG 1 chr2:39103036-39103116 ( 72) CTTCCGGG 1 chr3:178865834-178865914 ( 67) CTTCCGGG 1 chr5:143550173-143550253 ( 46) CTTCCGGG 1 chr19:51403009-51403089 ( 54) CTTCCGGG 1 chr18:61157727-61157807 ( 70) CTTCCGGG 1 chr13:41837662-41837742 ( 71) CTTCCGGG 1 chr5:49723-49803 ( 11) CTTCCGGG 1 chrX:70208422-70208502 ( 39) CTTCCGGG 1 chrX:2547782-2547862 ( 63) CTTCCTGG 1 chr17:37385600-37385680 ( 67) CTTCCTGG 1 chrX:2549623-2549703 ( 6) CTTCCTGG 1 chrX:2550344-2550424 ( 18) CTTCCTGG 1 chr15:83781879-83781959 ( 73) CTTCCTGG 1 chrX:2549044-2549124 ( 17) CTTCCTGG 1 chrX:2549331-2549411 ( 41) CTTCCTGG 1 chr17:80489022-80489102 ( 21) CTTCCTGG 1 chr19:51963859-51963939 ( 32) CTTCCTGG 1 chr17:37844260-37844340 ( 61) CTTCCGGA 1 chr17:7218703-7218783 ( 22) CTTCCGGA 1 chrX:153775788-153775868 ( 21) CTTCCGGA 1 chr2:219433430-219433510 ( 4) CTTCCGGT 1 chr11:134632369-13463244 ( 12) CTTCCGGT 1 chr12:498785-498865 ( 38) CTTCCGGT 1 chr1:155178998-155179078 ( 21) TTTCCGGG 1 chr6:109767370-109767450 ( 71) TTTCCGGG 1 chr7:5938242-5938322 ( 65) TTTCCGGG 1 chr19:59069496-59069576 ( 66) CTTCCTGA 1 chr1:226496212-226496292 ( 34) CTTCCAGG 1 chr10:50543569-50543649 ( 27) CTTCCTGT 1 chr11:62495846-62495926 ( 68) CTTCCAGG 1 chr17:72355019-72355099 ( 65) ATTCCGGG 1 chr10:103347951-10334803 ( 66) CTTCCGAG 1 chr20:61669293-61669373 ( 65) CTTCCGAG 1 chr9:74526516-74526596 ( 55) ATTCCTGG 1 chr22:43485445-43485525 ( 46) TTTCCGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTCCGGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.73438 E= 6.0e-017 -218 161 -1207 -118 -1207 -1207 -1207 225 -1207 -1207 -1207 225 -1207 182 -1207 -1207 -1207 182 -1207 -1207 -218 -1207 119 40 -218 -1207 169 -1207 -86 -1207 142 -118 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTCCGGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 43 E= 6.0e-017 0.046512 0.860465 0.000000 0.093023 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.046512 0.000000 0.674419 0.279070 0.046512 0.000000 0.953488 0.000000 0.116279 0.000000 0.790698 0.093023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTCCGGG MEME-4 regular expression -------------------------------------------------------------------------------- CTTCC[GT]GG -------------------------------------------------------------------------------- Time 15.81 secs. ******************************************************************************** ******************************************************************************** MOTIF GGTCAGRG MEME-5 width = 8 sites = 54 llr = 432 E-value = 3.5e-013 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTCAGRG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::a36: pos.-specific C ::19:::: probability G a9:1:74a matrix T :191:::: bits 2.2 2.0 * 1.8 * * * 1.6 * * * * Relative 1.3 * * * * Entropy 1.1 ******** (11.5 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGTCAGAG consensus AG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCAGRG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:70637112-70637192 63 2.01e-05 TCACGGCGGC GGTCAGAG GGTAAAGGTC chr3:52485708-52485788 24 2.01e-05 TGTGGGTCAG GGTCAGAG GTCAAGGGTC chr9:38195850-38195930 46 2.01e-05 gtgtaaacaa ggtcagag gtcaaaggtc chr17:6374166-6374246 42 2.01e-05 TTTGAGGCAG GGTCAGAG TTCAGGGCTC chr4:8703459-8703539 32 2.01e-05 CAGGGTTGGA GGTCAGAG GTCGGAGGTC chr1:910309-910389 28 2.01e-05 GAGTATGTGA GGTCAGAG GGCATGAGGG chr6:169852562-169852642 53 2.01e-05 CCGTGCGTGG GGTCAGAG AGGAGCCGTG chr11:72490890-72490970 43 2.01e-05 AAGGGCTCAG GGTCAGAG GGGAAAGGTC chr19:3339043-3339123 37 2.01e-05 TGAGGCTGGA GGTCAGAG GGCAAAGGGC chr11:118868824-11886890 20 2.01e-05 GAGGGGTCAG GGTCAGAG GCCGCCGGAT chr11:1229414-1229494 35 2.01e-05 TGGGGTCGTA GGTCAGAG TTCAGAGTTC chr17:61920532-61920612 21 2.01e-05 TGAGGCGCGG GGTCAGAG GTCTAAGGTC chr19:10102615-10102695 17 2.01e-05 GGACAATCGG GGTCAGAG TGTCAGAAGG chr16:70669386-70669466 30 2.01e-05 GCTAGTCACA GGTCAGAG GTTGGAGGTC chr19:10416121-10416201 66 2.01e-05 AAAGGGCAGG GGTCAGAG GCCAAGC chr1:155178998-155179078 73 6.25e-05 CTGTTCTGCT GGTCAGGG chr11:47490307-47490387 24 6.25e-05 GTCAACACAA GGTCAAAG GTGAGAGTTC chrX:155249505-155249585 36 6.25e-05 tcagggtcag ggtcaggg tcaagggtca chr9:141127437-141127517 42 6.25e-05 taagggtcag ggtcaggg gttagggtca chr8:28102229-28102309 35 6.25e-05 GGAGGGGAAA GGTCAGGG GTCAAAGGTC chr22:47158720-47158800 54 6.25e-05 GCCAGGTCGG GGTCAGGG GTCAGAGGTC chr5:49723-49803 35 6.25e-05 tcagggttag ggtcaggg tcagggtaca chr11:76316945-76317025 40 6.25e-05 aaaacctcgg ggtcaaag gtcaaaggtc chr1:1175296-1175376 53 6.25e-05 AAGGGTCAGG GGTCAGGG GTCGGGTTGA chr15:102520971-10252105 9 6.25e-05 agggttag ggtcaggg tcggggtcgg chr16:90188403-90188483 45 6.25e-05 taagggtcag ggtcaggg gttagggtca chr2:3704365-3704445 35 6.25e-05 GGAGGGCAGG GGTCAGGG TGTGGAGGGC chr3:197901024-197901104 41 6.25e-05 taagggtcag ggtcaggg gtttgggtca chr11:71170958-71171038 48 8.25e-05 gaaggtcgga ggtcaagg ggtcaggggt chr19:1173714-1173794 64 8.25e-05 ATGAGTGCGG GGTCAAGG GTTACCAGA chr16:30640150-30640230 52 9.69e-05 TTCATTcgta gttcagag ggaagaggtc chr19:19745174-19745254 19 9.69e-05 ATGGATTAAG GTTCAGAG TTCAGAAAAC chr8:145011956-145012036 41 9.69e-05 AGAGGTCAAG GTTCAGAG TCCAAGCAGC chr16:30392775-30392855 57 1.24e-04 AGAGATCAAA GGCCAGAG GGCAGGGGGC chr19:10197296-10197376 58 1.24e-04 AAAGGTCAGA GGCCAGAG ATAACCTGGC chr1:27933996-27934076 18 1.24e-04 AGAGGCCAGA GGCCAGAG GGCAAAGGTC chr5:67721029-67721109 60 1.75e-04 aaggaaggaa gttcaggg aaagccacaa chr2:240206802-240206882 38 1.75e-04 aaagttcaaa gttcaaag actGCAGATG chr1:27691013-27691093 60 2.61e-04 TGACTGAGGA GGCCAGGG GGATTAGTGG chr19:1020633-1020713 53 2.61e-04 TCCCCAGCGG GGCCAGGG GTCGCGGTCG chr5:143550173-143550253 33 2.61e-04 CGTGTCACAG GGCCAAAG AACGGCTTCC chr12:56282520-56282600 39 2.61e-04 aagggtcaaa gatcagag ttcggggaga chr17:7218703-7218783 54 3.20e-04 CGACCTCACA GGTGAAAG AAGGCGGAAG chr20:43859404-43859484 27 3.20e-04 TCTTCCTGGA GGTGAAAG GAAACAGATG chr8:23248432-23248512 26 3.20e-04 gaaggtgaaa ggtgaaag gtgaaaggtg chr8:13082071-13082151 39 3.20e-04 AAAGGTTAAA GGTGAAAG GTGAATTCTA chr11:65319166-65319246 15 3.51e-04 TAGATTCTGG GGTTAGGG TGTGTTTGCA chr2:132560972-132561052 72 3.51e-04 tagggtcagg ggttaggg g chr6:109767370-109767450 27 4.09e-04 GGGCGTGGCG GGCCAAGG CGGAGCAGCT chr19:37178342-37178422 18 4.09e-04 GGGAACCAGA GATCAAAG TTCGAAAACC chr6:33263565-33263645 53 4.09e-04 GATCTCAGGT GGCCAAGG AACCAGAGGG chr14:75469604-75469684 61 4.49e-04 GGATTCCGCC GGTGAAGG CTGAAGGCAG chr8:101738761-101738841 1 4.90e-04 . GTTTAGAG CTAACATGCT chr9:37568675-37568755 69 5.32e-04 TGTGGTCTAA ggtcggag ttca -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCAGRG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:70637112-70637192 2e-05 62_[+5]_10 chr3:52485708-52485788 2e-05 23_[+5]_49 chr9:38195850-38195930 2e-05 45_[+5]_27 chr17:6374166-6374246 2e-05 41_[+5]_31 chr4:8703459-8703539 2e-05 31_[+5]_41 chr1:910309-910389 2e-05 27_[+5]_45 chr6:169852562-169852642 2e-05 52_[+5]_20 chr11:72490890-72490970 2e-05 42_[+5]_30 chr19:3339043-3339123 2e-05 36_[+5]_36 chr11:118868824-11886890 2e-05 19_[+5]_53 chr11:1229414-1229494 2e-05 34_[+5]_38 chr17:61920532-61920612 2e-05 20_[+5]_52 chr19:10102615-10102695 2e-05 16_[+5]_56 chr16:70669386-70669466 2e-05 29_[+5]_43 chr19:10416121-10416201 2e-05 65_[+5]_7 chr1:155178998-155179078 6.2e-05 72_[+5] chr11:47490307-47490387 6.2e-05 23_[+5]_49 chrX:155249505-155249585 6.2e-05 35_[+5]_37 chr9:141127437-141127517 6.2e-05 41_[+5]_31 chr8:28102229-28102309 6.2e-05 34_[+5]_38 chr22:47158720-47158800 6.2e-05 53_[+5]_19 chr5:49723-49803 6.2e-05 34_[+5]_38 chr11:76316945-76317025 6.2e-05 39_[+5]_33 chr1:1175296-1175376 6.2e-05 52_[+5]_20 chr15:102520971-10252105 6.2e-05 8_[+5]_64 chr16:90188403-90188483 6.2e-05 44_[+5]_28 chr2:3704365-3704445 6.2e-05 34_[+5]_38 chr3:197901024-197901104 6.2e-05 40_[+5]_32 chr11:71170958-71171038 8.3e-05 47_[+5]_25 chr19:1173714-1173794 8.3e-05 63_[+5]_9 chr16:30640150-30640230 9.7e-05 51_[+5]_21 chr19:19745174-19745254 9.7e-05 18_[+5]_54 chr8:145011956-145012036 9.7e-05 40_[+5]_32 chr16:30392775-30392855 0.00012 56_[+5]_16 chr19:10197296-10197376 0.00012 57_[+5]_15 chr1:27933996-27934076 0.00012 17_[+5]_55 chr5:67721029-67721109 0.00018 59_[+5]_13 chr2:240206802-240206882 0.00018 37_[+5]_35 chr1:27691013-27691093 0.00026 59_[+5]_13 chr19:1020633-1020713 0.00026 52_[+5]_20 chr5:143550173-143550253 0.00026 32_[+5]_40 chr12:56282520-56282600 0.00026 38_[+5]_34 chr17:7218703-7218783 0.00032 53_[+5]_19 chr20:43859404-43859484 0.00032 26_[+5]_46 chr8:23248432-23248512 0.00032 25_[+5]_47 chr8:13082071-13082151 0.00032 38_[+5]_34 chr11:65319166-65319246 0.00035 14_[+5]_58 chr2:132560972-132561052 0.00035 71_[+5]_1 chr6:109767370-109767450 0.00041 26_[+5]_46 chr19:37178342-37178422 0.00041 17_[+5]_55 chr6:33263565-33263645 0.00041 52_[+5]_20 chr14:75469604-75469684 0.00045 60_[+5]_12 chr8:101738761-101738841 0.00049 [+5]_72 chr9:37568675-37568755 0.00053 68_[+5]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCAGRG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTCAGRG width=8 seqs=54 chr12:70637112-70637192 ( 63) GGTCAGAG 1 chr3:52485708-52485788 ( 24) GGTCAGAG 1 chr9:38195850-38195930 ( 46) GGTCAGAG 1 chr17:6374166-6374246 ( 42) GGTCAGAG 1 chr4:8703459-8703539 ( 32) GGTCAGAG 1 chr1:910309-910389 ( 28) GGTCAGAG 1 chr6:169852562-169852642 ( 53) GGTCAGAG 1 chr11:72490890-72490970 ( 43) GGTCAGAG 1 chr19:3339043-3339123 ( 37) GGTCAGAG 1 chr11:118868824-11886890 ( 20) GGTCAGAG 1 chr11:1229414-1229494 ( 35) GGTCAGAG 1 chr17:61920532-61920612 ( 21) GGTCAGAG 1 chr19:10102615-10102695 ( 17) GGTCAGAG 1 chr16:70669386-70669466 ( 30) GGTCAGAG 1 chr19:10416121-10416201 ( 66) GGTCAGAG 1 chr1:155178998-155179078 ( 73) GGTCAGGG 1 chr11:47490307-47490387 ( 24) GGTCAAAG 1 chrX:155249505-155249585 ( 36) GGTCAGGG 1 chr9:141127437-141127517 ( 42) GGTCAGGG 1 chr8:28102229-28102309 ( 35) GGTCAGGG 1 chr22:47158720-47158800 ( 54) GGTCAGGG 1 chr5:49723-49803 ( 35) GGTCAGGG 1 chr11:76316945-76317025 ( 40) GGTCAAAG 1 chr1:1175296-1175376 ( 53) GGTCAGGG 1 chr15:102520971-10252105 ( 9) GGTCAGGG 1 chr16:90188403-90188483 ( 45) GGTCAGGG 1 chr2:3704365-3704445 ( 35) GGTCAGGG 1 chr3:197901024-197901104 ( 41) GGTCAGGG 1 chr11:71170958-71171038 ( 48) GGTCAAGG 1 chr19:1173714-1173794 ( 64) GGTCAAGG 1 chr16:30640150-30640230 ( 52) GTTCAGAG 1 chr19:19745174-19745254 ( 19) GTTCAGAG 1 chr8:145011956-145012036 ( 41) GTTCAGAG 1 chr16:30392775-30392855 ( 57) GGCCAGAG 1 chr19:10197296-10197376 ( 58) GGCCAGAG 1 chr1:27933996-27934076 ( 18) GGCCAGAG 1 chr5:67721029-67721109 ( 60) GTTCAGGG 1 chr2:240206802-240206882 ( 38) GTTCAAAG 1 chr1:27691013-27691093 ( 60) GGCCAGGG 1 chr19:1020633-1020713 ( 53) GGCCAGGG 1 chr5:143550173-143550253 ( 33) GGCCAAAG 1 chr12:56282520-56282600 ( 39) GATCAGAG 1 chr17:7218703-7218783 ( 54) GGTGAAAG 1 chr20:43859404-43859484 ( 27) GGTGAAAG 1 chr8:23248432-23248512 ( 26) GGTGAAAG 1 chr8:13082071-13082151 ( 39) GGTGAAAG 1 chr11:65319166-65319246 ( 15) GGTTAGGG 1 chr2:132560972-132561052 ( 72) GGTTAGGG 1 chr6:109767370-109767450 ( 27) GGCCAAGG 1 chr19:37178342-37178422 ( 18) GATCAAAG 1 chr6:33263565-33263645 ( 53) GGCCAAGG 1 chr14:75469604-75469684 ( 61) GGTGAAGG 1 chr8:101738761-101738841 ( 1) GTTTAGAG 1 chr9:37568675-37568755 ( 69) GGTCGGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCAGRG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.59303 E= 3.5e-013 -1240 -1240 176 -1240 -251 -1240 153 -92 -1240 -93 -1240 201 -1240 159 -167 -192 221 -1240 -399 -1240 29 -1240 133 -1240 153 -1240 40 -1240 -1240 -1240 176 -1240 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCAGRG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 54 E= 3.5e-013 0.000000 0.000000 1.000000 0.000000 0.037037 0.000000 0.851852 0.111111 0.000000 0.148148 0.000000 0.851852 0.000000 0.851852 0.092593 0.055556 0.981481 0.000000 0.018519 0.000000 0.259259 0.000000 0.740741 0.000000 0.611111 0.000000 0.388889 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCAGRG MEME-5 regular expression -------------------------------------------------------------------------------- GGTCA[GA][AG]G -------------------------------------------------------------------------------- Time 19.19 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:4236036-4236116 4.16e-01 80 chr2:132570336-132570416 5.32e-01 80 chr3:197901024-197901104 1.27e-02 31_[+2(3.90e-05)]_1_[+5(6.25e-05)]_\ 5_[+5(8.25e-05)]_5_[+5(8.25e-05)]_6 chr2:3704365-3704445 9.12e-03 10_[+2(2.46e-05)]_16_[+5(6.25e-05)]_\ 10_[+2(2.46e-05)]_20 chr1:143274056-143274136 2.24e-01 8_[+1(4.04e-05)]_64 chr3:52479325-52479405 1.51e-03 72_[+5(6.25e-05)] chr19:11513019-11513099 1.32e-01 80 chr19:49713409-49713489 2.69e-02 20_[+1(6.29e-05)]_9_[+1(1.31e-05)]_\ 35 chr2:71615445-71615525 2.20e-01 28_[+1(2.29e-05)]_7_[+1(2.29e-05)]_\ 29 chr9:37568675-37568755 1.17e-02 46_[+5(2.01e-05)]_26 chr19:45317014-45317094 6.75e-02 5_[+1(1.31e-05)]_29_[+1(1.31e-05)]_\ 30 chr6:33263565-33263645 4.13e-03 80 chr19:10416121-10416201 7.25e-05 44_[+5(2.01e-05)]_13_[+5(2.01e-05)]_\ 7 chr11:64027128-64027208 3.01e-01 48_[+1(6.29e-05)]_24 chr16:70669386-70669466 1.22e-04 29_[+5(2.01e-05)]_6_[+5(2.01e-05)]_\ 29 chr17:37769323-37769403 6.07e-02 40_[+1(2.29e-05)]_32 chr18:54318804-54318884 5.61e-03 65_[+5(6.25e-05)]_7 chr22:37260198-37260278 1.16e-01 25_[+1(1.31e-05)]_13_[+1(1.31e-05)]_\ 26 chr16:90188403-90188483 1.27e-02 35_[+2(3.90e-05)]_1_[+5(6.25e-05)]_\ 5_[+5(8.25e-05)]_5_[+5(8.25e-05)]_2 chr1:27675482-27675562 5.99e-02 8_[+1(1.31e-05)]_17_[+1(1.31e-05)]_\ 21_[+1(1.31e-05)]_10 chr16:4608212-4608292 2.47e-01 43_[+1(4.04e-05)]_29 chr19:51294403-51294483 1.10e-01 61_[+1(1.31e-05)]_11 chr19:50919361-50919441 5.97e-02 34_[+1(1.31e-05)]_7_[+1(4.04e-05)]_\ 23 chr1:147323444-147323524 8.75e-02 19_[+1(6.29e-05)]_53 chr22:47331696-47331776 7.49e-01 80 chr20:42087857-42087937 8.54e-03 50_[+3(6.40e-05)]_22 chr5:148745147-148745227 1.75e-02 67_[+1(6.29e-05)]_5 chr15:102520971-10252105 2.84e-02 8_[+5(6.25e-05)]_16_[+5(6.25e-05)]_\ 40 chr1:27933996-27934076 3.70e-04 28_[+2(1.03e-05)]_44 chr19:10102615-10102695 1.18e-03 16_[+5(2.01e-05)]_9_[+5(2.01e-05)]_\ 39 chr1:1175296-1175376 2.92e-03 42_[+2(3.90e-05)]_2_[+5(6.25e-05)]_\ 20 chrX:70208422-70208502 5.57e-04 38_[+4(2.56e-05)]_34 chr1:26516017-26516097 2.79e-02 12_[+1(1.31e-05)]_24_[+1(2.29e-05)]_\ 28 chr8:145011956-145012036 4.28e-03 30_[+2(2.46e-05)]_2_[+5(9.69e-05)]_\ 32 chr16:69795-69875 4.56e-01 80 chr3:125153722-125153802 1.10e-01 42_[+1(1.31e-05)]_30 chr19:10197296-10197376 3.17e-04 47_[+2(1.03e-05)]_25 chr19:19745174-19745254 4.54e-04 18_[+5(9.69e-05)]_17_[+2(1.03e-05)]_\ 12_[+2(7.27e-05)]_9 chr1:110752516-110752596 1.14e-01 80 chr16:2586542-2586622 1.65e-01 80 chr5:131516832-131516912 5.02e-06 29_[+1(1.31e-05)]_15_[+5(6.25e-05)]_\ 20 chr13:113344069-11334414 2.56e-01 80 chr17:61920532-61920612 5.77e-03 20_[+5(2.01e-05)]_52 chr19:51963859-51963939 2.03e-03 31_[+4(4.40e-05)]_41 chr8:144816249-144816329 1.34e-03 8_[+1(4.04e-05)]_9_[+3(2.56e-05)]_\ 47 chrX:54208902-54208982 1.06e-01 35_[+3(2.56e-05)]_37 chr11:1229414-1229494 1.44e-04 13_[+1(1.31e-05)]_13_[+5(2.01e-05)]_\ 38 chr17:1371229-1371309 1.09e-02 7_[+5(2.01e-05)]_65 chr2:27603295-27603375 1.33e-01 39_[+1(2.29e-05)]_33 chr17:38083139-38083219 1.47e-01 59_[+1(6.29e-05)]_13 chr11:76316945-76317025 1.28e-04 43_[+2(1.03e-05)]_29 chr4:1044894-1044974 1.59e-01 14_[+3(2.56e-05)]_58 chr20:43858260-43858340 2.90e-04 36_[+4(4.40e-05)]_22_[+4(2.56e-05)]_\ 6 chr17:47999719-47999799 6.23e-02 30_[+1(1.31e-05)]_42 chr17:80489022-80489102 1.15e-03 20_[+4(4.40e-05)]_12_[+1(4.04e-05)]_\ 32 chr19:45811711-45811791 7.87e-02 53_[+3(4.48e-05)]_19 chr5:49723-49803 2.97e-04 10_[+4(2.56e-05)]_4_[+5(6.25e-05)]_\ 4_[+5(6.25e-05)]_13_[+4(2.56e-05)]_4_[+5(6.25e-05)]_5 chr7:6865934-6866014 2.84e-01 10_[+3(8.23e-05)]_62 chr12:48551223-48551303 1.04e-02 66_[+3(2.56e-05)]_6 chr14:24912085-24912165 1.47e-02 30_[+3(8.23e-05)]_42 chr22:47158720-47158800 1.58e-04 53_[+5(6.25e-05)]_3_[+2(2.46e-05)]_\ 8 chrX:2549331-2549411 5.69e-02 40_[+4(4.40e-05)]_20_[+4(4.40e-05)]_\ 4 chr19:1173714-1173794 7.80e-03 63_[+5(8.25e-05)]_9 chr7:128478251-128478331 5.44e-02 52_[+1(1.31e-05)]_20 chr22:35887534-35887614 2.05e-01 80 chr19:17420638-17420718 1.27e-01 80 chr15:65140680-65140760 1.50e-01 80 chr10:103815480-10381556 2.27e-04 41_[+2(1.03e-05)]_31 chr20:19997931-19998011 1.60e-01 80 chr8:21897270-21897350 2.14e-02 80 chr8:182396-182476 7.76e-02 80 chr19:17108090-17108170 4.53e-01 80 chr11:126199011-12619909 1.53e-01 35_[+1(1.31e-05)]_37 chr20:62331303-62331383 3.07e-02 80 chr19:6313533-6313613 1.12e-03 80 chr11:118868824-11886890 1.11e-03 19_[+5(2.01e-05)]_53 chr20:61669293-61669373 3.78e-02 44_[+2(9.19e-05)]_28 chr14:93460595-93460675 2.95e-02 27_[+3(2.56e-05)]_45 chr19:3339043-3339123 2.31e-03 36_[+5(2.01e-05)]_36 chr19:49099672-49099752 1.38e-01 5_[+1(1.31e-05)]_11_[+1(1.31e-05)]_\ 11_[+1(1.31e-05)]_11_[+1(1.31e-05)]_10 chr6:146285286-146285366 8.95e-01 80 chr19:38943103-38943183 1.85e-02 13_[+1(1.31e-05)]_7_[+1(4.04e-05)]_\ 44 chr13:41837662-41837742 1.97e-02 55_[+4(4.40e-05)]_7_[+4(2.56e-05)]_\ 2 chr1:155151494-155151574 9.04e-02 25_[+1(2.29e-05)]_47 chr18:61157727-61157807 7.81e-03 69_[+4(2.56e-05)]_3 chr19:49136792-49136872 1.39e-03 55_[+2(1.03e-05)]_17 chr11:62495846-62495926 6.46e-02 80 chr4:187762364-187762444 8.52e-02 32_[+3(2.56e-05)]_40 chr19:1874639-1874719 5.29e-03 55_[+4(2.56e-05)]_17 chr8:29154036-29154116 1.79e-03 11_[+4(2.56e-05)]_61 chr16:30392775-30392855 2.12e-04 7_[+3(6.40e-05)]_27_[+5(2.01e-05)]_\ 30 chr8:28102229-28102309 1.83e-04 31_[+2(1.03e-05)]_6_[+2(1.03e-05)]_\ 27 chr8:13082071-13082151 2.66e-03 24_[+5(6.25e-05)]_48 chr19:53758038-53758118 5.28e-01 80 chrX:2549044-2549124 5.28e-02 16_[+4(4.40e-05)]_21_[+4(4.40e-05)]_\ 27 chr8:23248432-23248512 1.93e-01 80 chr19:51403009-51403089 4.55e-04 53_[+4(2.56e-05)]_19 chr11:72490890-72490970 7.86e-04 42_[+5(2.01e-05)]_3_[+2(1.03e-05)]_\ 19 chr11:64073581-64073661 6.59e-04 46_[+2(1.03e-05)]_26 chr10:101491802-10149188 1.30e-01 80 chr16:30392523-30392603 1.98e-01 80 chr11:59382697-59382777 2.89e-02 63_[+3(2.56e-05)]_9 chr12:56282520-56282600 5.40e-04 28_[+2(3.90e-05)]_44 chr9:141127437-141127517 1.05e-02 32_[+2(3.90e-05)]_1_[+5(6.25e-05)]_\ 5_[+5(8.25e-05)]_5_[+5(8.25e-05)]_5 chr8:21867731-21867811 1.46e-01 16_[+3(2.56e-05)]_56 chr11:86158092-86158172 2.29e-02 80 chr6:169852562-169852642 4.39e-03 29_[+5(2.01e-05)]_15_[+5(2.01e-05)]_\ 20 chr12:56596296-56596376 1.09e-02 69_[+1(1.31e-05)]_3 chr19:52956759-52956839 1.39e-02 9_[+3(2.56e-05)]_42_[+3(2.56e-05)]_\ 13 chr5:176981607-176981687 3.03e-01 80 chr7:72321485-72321565 5.33e-04 72_[+2(1.03e-05)] chr10:103347951-10334803 4.17e-02 80 chr12:498785-498865 6.61e-03 37_[+4(8.06e-05)]_35 chr19:51041196-51041276 3.63e-04 50_[+1(6.29e-05)]_2_[+2(2.46e-05)]_\ 12 chr2:240206802-240206882 2.80e-03 80 chr7:5938242-5938322 1.72e-02 64_[+4(9.98e-05)]_8 chr9:35834821-35834901 4.12e-01 80 chrX:155249505-155249585 1.16e-02 10_[+5(6.25e-05)]_2_[+2(3.90e-05)]_\ 1_[+5(6.25e-05)]_8_[+2(3.90e-05)]_1_[+5(6.25e-05)]_5_[+5(6.25e-05)]_5 chr19:37178342-37178422 3.72e-02 80 chr22:16883797-16883877 3.05e-01 3_[+1(4.04e-05)]_12_[+1(4.04e-05)]_\ 49 chr5:143550173-143550253 3.45e-03 45_[+4(2.56e-05)]_27 chr1:78245275-78245355 3.53e-02 42_[+3(2.56e-05)]_30 chr16:30710537-30710617 3.60e-01 80 chr1:18458702-18458782 1.48e-02 69_[+2(5.27e-05)]_3 chr2:232826377-232826457 1.31e-01 34_[+3(2.56e-05)]_38 chr19:1068251-1068331 1.86e-04 27_[+1(1.31e-05)]_6_[+1(4.04e-05)]_\ 4_[+5(6.25e-05)]_19 chr9:14993247-14993327 1.23e-01 27_[+3(2.56e-05)]_45 chr2:152144854-152144934 1.87e-02 9_[+3(2.56e-05)]_63 chr19:6393192-6393272 7.28e-02 23_[+3(2.56e-05)]_49 chr3:119395972-119396052 5.93e-02 15_[+3(6.40e-05)]_57 chr2:3381137-3381217 1.59e-03 80 chr20:43767647-43767727 3.09e-02 44_[+3(4.48e-05)]_28 chr15:83781879-83781959 1.94e-04 34_[+1(1.31e-05)]_30_[+4(4.40e-05)] chr3:178865834-178865914 5.36e-02 66_[+4(2.56e-05)]_6 chr1:183905299-183905379 1.89e-02 41_[+2(1.03e-05)]_6_[+2(1.03e-05)]_\ 17 chr3:14316087-14316167 6.43e-04 43_[+4(2.56e-05)]_29 chr9:116036893-116036973 7.71e-02 80 chrX:2550344-2550424 3.53e-03 17_[+4(4.40e-05)]_55 chr12:69864126-69864206 4.22e-03 25_[+3(2.56e-05)]_47 chr19:50909844-50909924 1.43e-01 21_[+1(6.29e-05)]_51 chr6:163991725-163991805 6.18e-02 29_[+1(1.31e-05)]_43 chr16:30640150-30640230 2.21e-04 51_[+5(9.69e-05)]_3_[+2(2.46e-05)]_\ 10 chr1:910309-910389 1.08e-03 [+2(1.03e-05)]_4_[+5(2.01e-05)]_7_\ [+5(2.01e-05)]_45 chr3:48481511-48481591 2.58e-02 28_[+1(1.31e-05)]_44 chr10:99185798-99185878 3.72e-01 80 chr4:123844199-123844279 7.12e-03 20_[+3(2.56e-05)]_52 chr8:28747338-28747418 1.28e-02 80 chr14:75469604-75469684 8.59e-03 16_[+3(2.56e-05)]_56 chr4:8703459-8703539 2.39e-03 31_[+5(2.01e-05)]_6_[+5(2.01e-05)]_\ 27 chr8:88886283-88886363 2.29e-01 80 chr14:75593742-75593822 2.25e-02 25_[+3(8.23e-05)]_47 chr3:45506093-45506173 3.34e-02 34_[+1(6.29e-05)]_38 chrX:2549623-2549703 1.34e-02 5_[+4(4.40e-05)]_67 chr22:51143702-51143782 1.01e-01 30_[+1(4.04e-05)]_6_[+1(6.29e-05)]_\ 28 chr17:72355019-72355099 3.36e-03 80 chr19:1020633-1020713 1.03e-01 80 chr10:50543569-50543649 1.19e-01 80 chr5:67721029-67721109 1.26e-04 28_[+2(1.03e-05)]_44 chr11:3188173-3188253 1.74e-02 31_[+2(2.46e-05)]_41 chr1:151137999-151138079 6.07e-02 16_[+1(1.31e-05)]_56 chr14:21458055-21458135 1.60e-01 80 chr2:39103036-39103116 1.44e-01 71_[+4(2.56e-05)]_1 chr19:42937873-42937953 3.07e-03 50_[+1(2.29e-05)]_22 chr1:3663914-3663994 2.16e-02 80 chr3:100120007-100120087 2.39e-04 23_[+4(2.56e-05)]_49 chr14:35761567-35761647 2.27e-03 17_[+3(2.56e-05)]_12_[+4(2.56e-05)]_\ 35 chr11:134632369-13463244 3.38e-01 11_[+4(8.06e-05)]_27_[+4(8.06e-05)]_\ 26 chr20:62918398-62918478 1.57e-01 80 chr4:144106077-144106157 8.13e-03 5_[+5(6.25e-05)]_67 chr11:62284357-62284437 7.85e-02 27_[+1(2.29e-05)]_45 chr2:100794761-100794841 2.62e-03 59_[+3(2.56e-05)]_13 chr3:121468760-121468840 2.14e-01 80 chr20:39542021-39542101 1.72e-03 16_[+3(2.56e-05)]_56 chr2:132560972-132561052 3.70e-02 64_[+5(6.25e-05)]_8 chr13:50018450-50018530 6.49e-03 80 chr8:101738761-101738841 3.26e-03 29_[+2(3.90e-05)]_7_[+2(3.90e-05)]_\ 28 chr16:14013997-14014077 8.18e-03 10_[+3(2.56e-05)]_62 chr22:43485445-43485525 1.23e-01 80 chr2:102798602-102798682 4.84e-04 44_[+4(2.56e-05)]_28 chr19:19477708-19477788 7.60e-03 43_[+3(6.40e-05)]_29 chr1:27691013-27691093 2.16e-02 80 chr19:44405944-44406024 3.05e-03 80 chr19:39536879-39536959 5.09e-02 47_[+3(4.48e-05)]_25 chr7:39663141-39663221 9.36e-02 15_[+3(2.56e-05)]_57 chr22:39898308-39898388 2.77e-02 40_[+3(2.56e-05)]_32 chr2:219433430-219433510 7.93e-03 3_[+4(8.06e-05)]_69 chr10:22994062-22994142 6.33e-04 64_[+4(2.56e-05)]_8 chr19:59069496-59069576 2.51e-02 80 chr20:48532162-48532242 4.14e-01 80 chr11:47490307-47490387 3.40e-03 9_[+2(1.03e-05)]_3_[+2(5.27e-05)]_\ 52 chr11:65319166-65319246 1.59e-02 80 chr2:58274346-58274426 1.73e-03 59_[+5(6.25e-05)]_13 chr17:61904516-61904596 8.81e-02 80 chr20:43859404-43859484 1.26e-05 17_[+4(4.40e-05)]_22_[+4(2.56e-05)]_\ 25 chr22:41215281-41215361 3.83e-01 80 chrX:53024683-53024763 2.27e-02 40_[+3(8.23e-05)]_32 chr1:762797-762877 3.67e-01 80 chr17:6374166-6374246 1.30e-03 17_[+5(2.01e-05)]_16_[+5(2.01e-05)]_\ 17_[+5(2.01e-05)]_6 chr10:102747266-10274734 9.47e-04 41_[+5(8.25e-05)]_31 chr22:36822423-36822503 4.94e-03 80 chr2:187867870-187867950 1.74e-04 60_[+4(2.56e-05)]_12 chr11:71170958-71171038 6.91e-03 55_[+5(6.25e-05)]_17 chrX:153775788-153775868 7.01e-03 20_[+4(6.23e-05)]_15_[+3(6.40e-05)]_\ 29 chrX:43138660-43138740 1.10e-01 80 chr17:1227643-1227723 2.67e-03 23_[+4(2.56e-05)]_21_[+4(2.56e-05)]_\ 20 chr2:70314440-70314520 2.59e-01 80 chr6:109767370-109767450 3.66e-02 70_[+4(9.98e-05)]_2 chr9:125675575-125675655 9.17e-02 80 chr16:2239664-2239744 4.06e-02 80 chr12:56223392-56223472 1.61e-03 28_[+4(2.56e-05)]_44 chr15:60878100-60878180 1.77e-01 80 chr21:46738916-46738996 3.15e-05 17_[+2(5.27e-05)]_55 chr19:46914851-46914931 9.23e-02 13_[+1(4.04e-05)]_59 chr9:74526516-74526596 7.77e-03 28_[+4(2.56e-05)]_44 chr1:155178998-155179078 8.27e-04 20_[+4(9.98e-05)]_44_[+5(6.25e-05)] chr2:70528454-70528534 1.65e-01 80 chr15:64648366-64648446 9.32e-01 80 chr16:67700650-67700730 2.54e-03 24_[+5(6.25e-05)]_48 chrX:7895721-7895801 8.56e-04 1_[+1(2.29e-05)]_21_[+3(2.56e-05)]_\ 25_[+3(2.56e-05)]_9 chr10:72475741-72475821 6.77e-03 38_[+1(1.31e-05)]_34 chr4:185334871-185334951 8.80e-02 80 chr22:44351210-44351290 8.18e-02 80 chr22:51020989-51021069 6.28e-01 80 chr9:38195850-38195930 2.39e-05 18_[+3(4.48e-05)]_19_[+5(2.01e-05)]_\ 3_[+2(1.03e-05)]_16 chr17:37385600-37385680 6.47e-04 51_[+1(1.31e-05)]_7_[+4(4.40e-05)]_\ 6 chr3:52485708-52485788 4.41e-04 17_[+5(6.25e-05)]_2_[+2(2.46e-05)]_\ 32_[+2(2.46e-05)]_5 chr3:37285163-37285243 4.87e-03 43_[+1(2.29e-05)]_29 chr7:76751680-76751760 9.41e-01 80 chr1:101360723-101360803 1.79e-01 80 chr3:49195700-49195780 4.65e-04 50_[+2(1.03e-05)]_22 chr15:85114261-85114341 2.30e-01 80 chr17:7218703-7218783 3.09e-03 21_[+4(6.23e-05)]_51 chr14:24701696-24701776 5.99e-01 80 chr1:226496212-226496292 5.77e-03 80 chr20:35513905-35513985 4.38e-04 35_[+2(1.03e-05)]_37 chr15:48623593-48623673 2.41e-03 23_[+2(9.19e-05)]_49 chr1:7887443-7887523 3.97e-02 29_[+3(6.40e-05)]_43 chr14:35452058-35452138 5.28e-01 80 chr2:238969349-238969429 5.86e-04 35_[+2(1.03e-05)]_9_[+3(2.56e-05)]_\ 20 chr10:27443296-27443376 2.46e-04 24_[+3(2.56e-05)]_22_[+4(2.56e-05)]_\ 18 chr12:70637112-70637192 8.78e-04 62_[+5(2.01e-05)]_10 chr7:140469796-140469876 7.18e-02 36_[+3(4.48e-05)]_36 chr1:228558156-228558236 1.26e-02 48_[+1(1.31e-05)]_24 chrX:2547782-2547862 3.93e-03 1_[+4(4.40e-05)]_20_[+4(9.98e-05)]_\ 25_[+4(4.40e-05)]_10 chr12:95467296-95467376 3.40e-05 29_[+5(2.01e-05)]_4_[+1(1.31e-05)]_\ 31 chr22:38349644-38349724 9.30e-03 19_[+3(2.56e-05)]_53 chr20:62668029-62668109 2.86e-02 24_[+1(1.31e-05)]_48 chr5:93954302-93954382 6.22e-03 15_[+3(8.23e-05)]_11_[+4(2.56e-05)]_\ 38 chr17:37844260-37844340 1.01e-02 60_[+4(6.23e-05)]_3_[+3(6.40e-05)]_\ 1 chr2:230786945-230787025 6.63e-02 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n07.farnam.hpc.yale.internal ********************************************************************************