******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/NONO.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr8:33371953-33372033 1.0000 80 chr21:46494565-46494645 1.0000 80 chr16:87902971-87903051 1.0000 80 chr13:42614419-42614499 1.0000 80 chrX:153686752-153686832 1.0000 80 chr14:35024138-35024218 1.0000 80 chr11:62608079-62608159 1.0000 80 chr14:35017154-35017234 1.0000 80 chr7:1498944-1499024 1.0000 80 chr16:88851488-88851568 1.0000 80 chr15:89456482-89456562 1.0000 80 chr17:45928375-45928455 1.0000 80 chr5:139726069-139726149 1.0000 80 chr22:22874486-22874566 1.0000 80 chr16:4421863-4421943 1.0000 80 chr9:38069027-38069107 1.0000 80 chr20:57464275-57464355 1.0000 80 chr1:45196109-45196189 1.0000 80 chr16:89989768-89989848 1.0000 80 chr15:30114483-30114563 1.0000 80 chr3:118959605-118959685 1.0000 80 chr8:74206871-74206951 1.0000 80 chr2:239148485-239148565 1.0000 80 chr20:60641460-60641540 1.0000 80 chr17:56160885-56160965 1.0000 80 chr11:130184432-13018451 1.0000 80 chr10:126107204-12610728 1.0000 80 chr1:17223274-17223354 1.0000 80 chr8:145047575-145047655 1.0000 80 chr16:1383721-1383801 1.0000 80 chr2:111878526-111878606 1.0000 80 chr1:28975826-28975906 1.0000 80 chr20:43976946-43977026 1.0000 80 chr14:35873826-35873906 1.0000 80 chr9:20684273-20684353 1.0000 80 chr16:81348821-81348901 1.0000 80 chr5:127419504-127419584 1.0000 80 chr11:62608305-62608385 1.0000 80 chr20:60641257-60641337 1.0000 80 chr3:101568406-101568486 1.0000 80 chr1:86046481-86046561 1.0000 80 chr6:26054304-26054384 1.0000 80 chr5:131826328-131826408 1.0000 80 chr1:180124072-180124152 1.0000 80 chr17:41444974-41445054 1.0000 80 chr1:231557908-231557988 1.0000 80 chr7:73038717-73038797 1.0000 80 chr9:86536365-86536445 1.0000 80 chrX:153718821-153718901 1.0000 80 chr18:19284629-19284709 1.0000 80 chr4:113066691-113066771 1.0000 80 chr19:4969112-4969192 1.0000 80 chr22:38598157-38598237 1.0000 80 chr17:80416705-80416785 1.0000 80 chr9:35814892-35814972 1.0000 80 chr1:45285122-45285202 1.0000 80 chr4:77870975-77871055 1.0000 80 chr8:11725471-11725551 1.0000 80 chr18:61034632-61034712 1.0000 80 chr5:73981104-73981184 1.0000 80 chr16:11349785-11349865 1.0000 80 chr19:16738940-16739020 1.0000 80 chr9:131314974-131315054 1.0000 80 chr18:33767518-33767598 1.0000 80 chr14:24563601-24563681 1.0000 80 chr2:113403794-113403874 1.0000 80 chr17:43226324-43226404 1.0000 80 chr10:3214851-3214931 1.0000 80 chr12:113659330-11365941 1.0000 80 chr17:76356027-76356107 1.0000 80 chr6:144329285-144329365 1.0000 80 chr1:9294936-9295016 1.0000 80 chr19:33793314-33793394 1.0000 80 chr20:5986835-5986915 1.0000 80 chr8:125827539-125827619 1.0000 80 chr1:201951925-201952005 1.0000 80 chr9:77643072-77643152 1.0000 80 chr3:101568605-101568685 1.0000 80 chr12:6976952-6977032 1.0000 80 chr17:79008966-79009046 1.0000 80 chr14:103589865-10358994 1.0000 80 chr3:141205950-141206030 1.0000 80 chr12:7054102-7054182 1.0000 80 chr9:86536566-86536646 1.0000 80 chr1:17223035-17223115 1.0000 80 chr17:77071043-77071123 1.0000 80 chr1:144535173-144535253 1.0000 80 chr14:35017360-35017440 1.0000 80 chr7:156685729-156685809 1.0000 80 chr19:13953454-13953534 1.0000 80 chr16:11836463-11836543 1.0000 80 chr1:32966135-32966215 1.0000 80 chr11:68452043-68452123 1.0000 80 chr12:6716426-6716506 1.0000 80 chr5:137806346-137806426 1.0000 80 chr1:206680949-206681029 1.0000 80 chr12:104850797-10485087 1.0000 80 chr9:74980007-74980087 1.0000 80 chr14:103989087-10398916 1.0000 80 chr17:11924259-11924339 1.0000 80 chr1:6453337-6453417 1.0000 80 chr17:79519265-79519345 1.0000 80 chr1:207779619-207779699 1.0000 80 chr15:60690064-60690144 1.0000 80 chr3:141595544-141595624 1.0000 80 chr20:56884861-56884941 1.0000 80 chr17:39834511-39834591 1.0000 80 chr10:30723142-30723222 1.0000 80 chr12:39836797-39836877 1.0000 80 chr17:16118687-16118767 1.0000 80 chr10:88855174-88855254 1.0000 80 chr17:16118888-16118968 1.0000 80 chr11:819631-819711 1.0000 80 chr8:145150074-145150154 1.0000 80 chr3:25824820-25824900 1.0000 80 chr12:107349737-10734981 1.0000 80 chr9:140500220-140500300 1.0000 80 chr4:56502349-56502429 1.0000 80 chr12:76953321-76953401 1.0000 80 chr11:2906885-2906965 1.0000 80 chr2:30454431-30454511 1.0000 80 chr8:145515337-145515417 1.0000 80 chr7:25019663-25019743 1.0000 80 chr14:90422370-90422450 1.0000 80 chr3:128206711-128206791 1.0000 80 chr17:1552708-1552788 1.0000 80 chr14:81687160-81687240 1.0000 80 chr4:1713888-1713968 1.0000 80 chr21:43430754-43430834 1.0000 80 chr12:102224496-10222457 1.0000 80 chr20:31350262-31350342 1.0000 80 chr14:34420156-34420236 1.0000 80 chr11:120107725-12010780 1.0000 80 chr1:45266165-45266245 1.0000 80 chr1:24104982-24105062 1.0000 80 chr1:156084579-156084659 1.0000 80 chr4:187644816-187644896 1.0000 80 chr19:30206243-30206323 1.0000 80 chr21:36260933-36261013 1.0000 80 chr2:131113714-131113794 1.0000 80 chr22:43011835-43011915 1.0000 80 chr1:236445072-236445152 1.0000 80 chr7:155089676-155089756 1.0000 80 chr2:63277515-63277595 1.0000 80 chr3:137893534-137893614 1.0000 80 chr8:21966780-21966860 1.0000 80 chrX:24043245-24043325 1.0000 80 chr15:74726093-74726173 1.0000 80 chr12:121163652-12116373 1.0000 80 chr13:115080095-11508017 1.0000 80 chr6:109415865-109415945 1.0000 80 chr11:64645968-64646048 1.0000 80 chr15:43426199-43426279 1.0000 80 chr6:149887607-149887687 1.0000 80 chr10:126107410-12610749 1.0000 80 chr8:63951282-63951362 1.0000 80 chr22:32340645-32340725 1.0000 80 chr2:173940996-173941076 1.0000 80 chr10:60094847-60094927 1.0000 80 chr10:49514822-49514902 1.0000 80 chr2:24346386-24346466 1.0000 80 chr11:19734145-19734225 1.0000 80 chr17:78120763-78120843 1.0000 80 chr9:139581660-139581740 1.0000 80 chr20:61273796-61273876 1.0000 80 chr20:8000178-8000258 1.0000 80 chr17:62207359-62207439 1.0000 80 chr6:90062456-90062536 1.0000 80 chr9:139557714-139557794 1.0000 80 chr20:57582115-57582195 1.0000 80 chr18:44497347-44497427 1.0000 80 chr15:102264495-10226457 1.0000 80 chr9:130590691-130590771 1.0000 80 chr9:5629194-5629274 1.0000 80 chr13:100259000-10025908 1.0000 80 chr22:29876244-29876324 1.0000 80 chr6:160148670-160148750 1.0000 80 chr1:33430319-33430399 1.0000 80 chr1:32801578-32801658 1.0000 80 chr11:65624849-65624929 1.0000 80 chr2:38977632-38977712 1.0000 80 chr17:39942794-39942874 1.0000 80 chr2:74374904-74374984 1.0000 80 chr15:68570516-68570596 1.0000 80 chr10:97803374-97803454 1.0000 80 chr6:76311732-76311812 1.0000 80 chr5:176924458-176924538 1.0000 80 chr16:47177638-47177718 1.0000 80 chr2:3523175-3523255 1.0000 80 chr7:95064226-95064306 1.0000 80 chr15:41221565-41221645 1.0000 80 chr1:244615022-244615102 1.0000 80 chr3:195163605-195163685 1.0000 80 chr20:45317863-45317943 1.0000 80 chr9:19230601-19230681 1.0000 80 chr20:23618415-23618495 1.0000 80 chr21:40177937-40178017 1.0000 80 chr12:110437370-11043745 1.0000 80 chr17:79818289-79818369 1.0000 80 chr1:156391398-156391478 1.0000 80 chr1:37940197-37940277 1.0000 80 chr17:73401578-73401658 1.0000 80 chr14:102430997-10243107 1.0000 80 chr20:49348144-49348224 1.0000 80 chr17:80055981-80056061 1.0000 80 chr18:2655769-2655849 1.0000 80 chr4:2757864-2757944 1.0000 80 chr1:207779819-207779899 1.0000 80 chr9:130565273-130565353 1.0000 80 chr20:49348346-49348426 1.0000 80 chr12:44229906-44229986 1.0000 80 chr2:85132870-85132950 1.0000 80 chr14:31343752-31343832 1.0000 80 chrX:153191632-153191712 1.0000 80 chr1:32801778-32801858 1.0000 80 chr2:223725788-223725868 1.0000 80 chr1:146555867-146555947 1.0000 80 chr9:94124055-94124135 1.0000 80 chr1:244816665-244816745 1.0000 80 chr8:48173590-48173670 1.0000 80 chr13:111367638-11136771 1.0000 80 chr6:149887856-149887936 1.0000 80 chr16:29624839-29624919 1.0000 80 chr21:30671461-30671541 1.0000 80 chr19:14247252-14247332 1.0000 80 chr6:151187118-151187198 1.0000 80 chr8:42249483-42249563 1.0000 80 chr1:6662716-6662796 1.0000 80 chr9:4741078-4741158 1.0000 80 chr6:160941454-160941534 1.0000 80 chr2:173940671-173940751 1.0000 80 chr2:30884493-30884573 1.0000 80 chr5:71403341-71403421 1.0000 80 chr20:62151804-62151884 1.0000 80 chr18:3012946-3013026 1.0000 80 chr19:59055808-59055888 1.0000 80 chr9:102581990-102582070 1.0000 80 chr11:110300961-11030104 1.0000 80 chr21:36261133-36261213 1.0000 80 chr7:140624413-140624493 1.0000 80 chrX:153599530-153599610 1.0000 80 chr3:57678642-57678722 1.0000 80 chr10:74451988-74452068 1.0000 80 chr6:3064204-3064284 1.0000 80 chr21:46494960-46495040 1.0000 80 chr3:122513987-122514067 1.0000 80 chr16:1429455-1429535 1.0000 80 chr12:6643789-6643869 1.0000 80 chr1:169075550-169075630 1.0000 80 chr12:39836998-39837078 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_NONO/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/NONO.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.134 C 0.368 G 0.368 T 0.13 Background letter frequencies (from file dataset with add-one prior applied): A 0.134 C 0.368 G 0.368 T 0.13 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF WRAAAWWA MEME-1 width = 8 sites = 21 llr = 209 E-value = 1.1e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif WRAAAWWA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 6389933a pos.-specific C ::2::1:: probability G :6::1::: matrix T 4::1:66: bits 2.9 2.6 * 2.4 * * 2.1 * ** * Relative 1.8 * *** * Entropy 1.5 * ****** (14.4 bits) 1.2 * ****** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel AGAAATTA consensus TAC AA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRAAAWWA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:41444974-41445054 53 4.61e-07 TCTGGAGTCC AGAAATTA GCAATGCACC chr1:28975826-28975906 3 9.24e-07 AT TGAAATTA CCTTCACCAG chr14:35017360-35017440 71 1.12e-06 ctgtctctac taaaaata ca chr1:144535173-144535253 27 1.67e-06 TCCAGATTTA AGAAAATA TCTATCAAAA chr1:45285122-45285202 12 1.67e-06 CAAAAACGCA AGAAATAA ACAATAGAAG chr1:45196109-45196189 55 1.78e-06 ataatttaaa aaaaaaaa aaaCCCTTTA chr6:109415865-109415945 38 3.07e-06 CGGGCGGCGG TGAAAAAA AGCGTCCCCC chr8:125827539-125827619 56 4.40e-06 TGATGTTCTT TACAATTA CTGTTTGGTT chr14:35024138-35024218 58 6.97e-06 AGattaatcc aacaaata tattgaaagc chr22:43011835-43011915 14 8.67e-06 GCTTTTGCAT TGATATAA CCCCAGCCTC chr11:62608079-62608159 25 8.67e-06 CAGAAAAGCA ACAAATTA CCAGTTTACA chr1:207779619-207779699 7 1.29e-05 ctggcc agaagtta gtaacatggc chr1:17223035-17223115 24 1.29e-05 AGAGCCAGGT AGAAACTA CGCAGATGGG chr2:30884493-30884573 53 1.49e-05 CTCTTGGCCC AAAAGTAA GAGATCTCCA chr17:39834511-39834591 2 1.49e-05 a aacaaaaa gaaagcaacc chr22:22874486-22874566 55 1.49e-05 CACCTCCGGG AGAAATTT GTCCAGAGAC chr5:137806346-137806426 47 2.51e-05 TTCTGACCCC TAAAATCA GAGGAACAAT chr9:86536566-86536646 53 3.42e-05 TACGGGTTCG TGAAATGA GTGAGAACGA chr6:26054304-26054384 7 4.71e-05 tTGATA AGATACTA CAGATTTAGG chr1:207779819-207779899 22 7.75e-05 TCTTAACTGT TGCAGTTA CTGCCTCATC chr1:146555867-146555947 54 8.60e-05 GGCCAATCTC TGCTAAAA GCAGCCCCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRAAAWWA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:41444974-41445054 4.6e-07 52_[+1]_20 chr1:28975826-28975906 9.2e-07 2_[+1]_70 chr14:35017360-35017440 1.1e-06 70_[+1]_2 chr1:144535173-144535253 1.7e-06 26_[+1]_46 chr1:45285122-45285202 1.7e-06 11_[+1]_61 chr1:45196109-45196189 1.8e-06 54_[+1]_18 chr6:109415865-109415945 3.1e-06 37_[+1]_35 chr8:125827539-125827619 4.4e-06 55_[+1]_17 chr14:35024138-35024218 7e-06 57_[+1]_15 chr22:43011835-43011915 8.7e-06 13_[+1]_59 chr11:62608079-62608159 8.7e-06 24_[+1]_48 chr1:207779619-207779699 1.3e-05 6_[+1]_66 chr1:17223035-17223115 1.3e-05 23_[+1]_49 chr2:30884493-30884573 1.5e-05 52_[+1]_20 chr17:39834511-39834591 1.5e-05 1_[+1]_71 chr22:22874486-22874566 1.5e-05 54_[+1]_18 chr5:137806346-137806426 2.5e-05 46_[+1]_26 chr9:86536566-86536646 3.4e-05 52_[+1]_20 chr6:26054304-26054384 4.7e-05 6_[+1]_66 chr1:207779819-207779899 7.7e-05 21_[+1]_51 chr1:146555867-146555947 8.6e-05 53_[+1]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRAAAWWA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WRAAAWWA width=8 seqs=21 chr17:41444974-41445054 ( 53) AGAAATTA 1 chr1:28975826-28975906 ( 3) TGAAATTA 1 chr14:35017360-35017440 ( 71) TAAAAATA 1 chr1:144535173-144535253 ( 27) AGAAAATA 1 chr1:45285122-45285202 ( 12) AGAAATAA 1 chr1:45196109-45196189 ( 55) AAAAAAAA 1 chr6:109415865-109415945 ( 38) TGAAAAAA 1 chr8:125827539-125827619 ( 56) TACAATTA 1 chr14:35024138-35024218 ( 58) AACAAATA 1 chr22:43011835-43011915 ( 14) TGATATAA 1 chr11:62608079-62608159 ( 25) ACAAATTA 1 chr1:207779619-207779699 ( 7) AGAAGTTA 1 chr1:17223035-17223115 ( 24) AGAAACTA 1 chr2:30884493-30884573 ( 53) AAAAGTAA 1 chr17:39834511-39834591 ( 2) AACAAAAA 1 chr22:22874486-22874566 ( 55) AGAAATTT 1 chr5:137806346-137806426 ( 47) TAAAATCA 1 chr9:86536566-86536646 ( 53) TGAAATGA 1 chr6:26054304-26054384 ( 7) AGATACTA 1 chr1:207779819-207779899 ( 22) TGCAGTTA 1 chr1:146555867-146555947 ( 54) TGCTAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRAAAWWA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.7488 E= 1.1e-007 209 -1104 -1104 172 132 -294 75 -1104 251 -63 -1104 -1104 268 -1104 -1104 14 268 -1104 -137 -1104 132 -195 -1104 214 132 -294 -295 214 283 -1104 -1104 -145 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRAAAWWA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 1.1e-007 0.571429 0.000000 0.000000 0.428571 0.333333 0.047619 0.619048 0.000000 0.761905 0.238095 0.000000 0.000000 0.857143 0.000000 0.000000 0.142857 0.857143 0.000000 0.142857 0.000000 0.333333 0.095238 0.000000 0.571429 0.333333 0.047619 0.047619 0.571429 0.952381 0.000000 0.000000 0.047619 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRAAAWWA MEME-1 regular expression -------------------------------------------------------------------------------- [AT][GA][AC]AA[TA][TA]A -------------------------------------------------------------------------------- Time 5.01 secs. ******************************************************************************** ******************************************************************************** MOTIF ARWTTWAW MEME-2 width = 8 sites = 13 llr = 142 E-value = 9.2e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif ARWTTWAW MEME-2 Description -------------------------------------------------------------------------------- Simplified A 94412495 pos.-specific C 1::::::: probability G :61::::1 matrix T ::598614 bits 2.9 2.6 * * 2.4 * ** * 2.1 * **** Relative 1.8 * **** Entropy 1.5 * ****** (15.8 bits) 1.2 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel AGTTTTAA consensus AA A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARWTTWAW MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr8:125827539-125827619 27 6.24e-07 ATCAATGACC AATTTAAA TGCCAGGTCT chr1:45196109-45196189 47 6.24e-07 AAGTGATCat aatttaaa aaaaaaaaaa chr1:17223274-17223354 12 1.41e-06 gaaggcggga agttttat gaggagccag chr11:62608079-62608159 66 2.02e-06 TCTAACGCGA AGAtttat ttatttt chr17:39834511-39834591 54 2.64e-06 attatatgct aattataa tgtatcagcc chr1:28975826-28975906 61 2.90e-06 catacacaaa agattaat tcaaggccgg chr14:35024138-35024218 48 2.90e-06 TGATGTCAAT AGattaat ccaacaaata chr14:35017154-35017234 60 3.45e-06 CCTTTCCTCC AGTTATAA TGTTGCCATT chr1:207779819-207779899 67 3.63e-06 TTTACCCTTT AATTTTTA CTTGGT chr11:62608305-62608385 43 1.20e-05 agcgcgaccT AGGTTTAA CACATCAAAC chr1:144535173-144535253 41 1.30e-05 AATATCTATC AAAATAAT GACAACATTG chr6:26054304-26054384 16 1.59e-05 AAGATACTAC AGATTTAG GTATTAGTTG chr17:41444974-41445054 32 1.89e-05 GCTTTCTTCA CGTTTTAA CTGTCTGGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARWTTWAW MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:125827539-125827619 6.2e-07 26_[+2]_46 chr1:45196109-45196189 6.2e-07 46_[+2]_26 chr1:17223274-17223354 1.4e-06 11_[+2]_61 chr11:62608079-62608159 2e-06 65_[+2]_7 chr17:39834511-39834591 2.6e-06 53_[+2]_19 chr1:28975826-28975906 2.9e-06 60_[+2]_12 chr14:35024138-35024218 2.9e-06 47_[+2]_25 chr14:35017154-35017234 3.4e-06 59_[+2]_13 chr1:207779819-207779899 3.6e-06 66_[+2]_6 chr11:62608305-62608385 1.2e-05 42_[+2]_30 chr1:144535173-144535253 1.3e-05 40_[+2]_32 chr6:26054304-26054384 1.6e-05 15_[+2]_57 chr17:41444974-41445054 1.9e-05 31_[+2]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARWTTWAW MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ARWTTWAW width=8 seqs=13 chr8:125827539-125827619 ( 27) AATTTAAA 1 chr1:45196109-45196189 ( 47) AATTTAAA 1 chr1:17223274-17223354 ( 12) AGTTTTAT 1 chr11:62608079-62608159 ( 66) AGATTTAT 1 chr17:39834511-39834591 ( 54) AATTATAA 1 chr1:28975826-28975906 ( 61) AGATTAAT 1 chr14:35024138-35024218 ( 48) AGATTAAT 1 chr14:35017154-35017234 ( 60) AGTTATAA 1 chr1:207779819-207779899 ( 67) AATTTTTA 1 chr11:62608305-62608385 ( 43) AGGTTTAA 1 chr1:144535173-144535253 ( 41) AAAATAAT 1 chr6:26054304-26054384 ( 16) AGATTTAG 1 chr17:41444974-41445054 ( 32) CGTTTTAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARWTTWAW MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.6191 E= 9.2e-005 278 -225 -1035 -1035 152 -1035 74 -1035 152 -1035 -226 205 -80 -1035 -1035 283 20 -1035 -1035 270 152 -1035 -1035 224 278 -1035 -1035 -76 201 -1035 -226 156 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARWTTWAW MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 9.2e-005 0.923077 0.076923 0.000000 0.000000 0.384615 0.000000 0.615385 0.000000 0.384615 0.000000 0.076923 0.538462 0.076923 0.000000 0.000000 0.923077 0.153846 0.000000 0.000000 0.846154 0.384615 0.000000 0.000000 0.615385 0.923077 0.000000 0.000000 0.076923 0.538462 0.000000 0.076923 0.384615 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARWTTWAW MEME-2 regular expression -------------------------------------------------------------------------------- A[GA][TA]TT[TA]A[AT] -------------------------------------------------------------------------------- Time 8.72 secs. ******************************************************************************** ******************************************************************************** MOTIF TYYWTMTA MEME-3 width = 8 sites = 11 llr = 119 E-value = 4.4e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TYYWTMTA MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::26153a pos.-specific C :53::3:: probability G :::::2:: matrix T a5549:7: bits 2.9 * * 2.6 * * 2.4 * * * 2.1 * ** ** Relative 1.8 * ** ** Entropy 1.5 * ** ** (15.6 bits) 1.2 ***** ** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel TTTATATA consensus CCT CA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYYWTMTA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:39834511-39834591 42 7.92e-07 tccttactgc ttattata tgctaattat chr12:7054102-7054182 43 1.54e-06 attgttttgt ttcatata cacgcacctt chr1:17223274-17223354 57 1.54e-06 tctccGGCAG TTCATATA TCTAGTGTTT chr11:62608079-62608159 52 1.54e-06 AAGTAAACCC TTTATCTA ACGCGAAGAt chr1:28975826-28975906 33 2.88e-06 CTTAGCAAAC TTTTTCTA taccttatac chr1:207779819-207779899 38 4.57e-06 TACTGCCTCA TCATTATA TGGCATTCCA chr2:3523175-3523255 61 6.07e-06 CGGGGCGTCG TCCATATA CCAGGCCTGC chr1:45196109-45196189 69 8.38e-06 aaaaaaaCCC TTTAAAAA CTAA chr9:86536566-86536646 37 1.05e-05 AGCGCAAGCA TCTTTCTA CGGGTTCGTG chr10:126107410-12610749 68 1.80e-05 ACACGCGGCG TCTATGAA GCGCA chr21:36260933-36261013 49 1.80e-05 gcccgcTGGC TCTATGAA TGAGAGTGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYYWTMTA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:39834511-39834591 7.9e-07 41_[+3]_31 chr12:7054102-7054182 1.5e-06 42_[+3]_30 chr1:17223274-17223354 1.5e-06 56_[+3]_16 chr11:62608079-62608159 1.5e-06 51_[+3]_21 chr1:28975826-28975906 2.9e-06 32_[+3]_40 chr1:207779819-207779899 4.6e-06 37_[+3]_35 chr2:3523175-3523255 6.1e-06 60_[+3]_12 chr1:45196109-45196189 8.4e-06 68_[+3]_4 chr9:86536566-86536646 1.1e-05 36_[+3]_36 chr10:126107410-12610749 1.8e-05 67_[+3]_5 chr21:36260933-36261013 1.8e-05 48_[+3]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYYWTMTA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TYYWTMTA width=8 seqs=11 chr17:39834511-39834591 ( 42) TTATTATA 1 chr12:7054102-7054182 ( 43) TTCATATA 1 chr1:17223274-17223354 ( 57) TTCATATA 1 chr11:62608079-62608159 ( 52) TTTATCTA 1 chr1:28975826-28975906 ( 33) TTTTTCTA 1 chr1:207779819-207779899 ( 38) TCATTATA 1 chr2:3523175-3523255 ( 61) TCCATATA 1 chr1:45196109-45196189 ( 69) TTTAAAAA 1 chr9:86536566-86536646 ( 37) TCTTTCTA 1 chr10:126107410-12610749 ( 68) TCTATGAA 1 chr21:36260933-36261013 ( 49) TCTATGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYYWTMTA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.0506 E= 4.4e-001 -1010 -1010 -1010 294 -1010 31 -1010 207 44 -43 -1010 207 225 -1010 -1010 148 -56 -1010 -1010 280 203 -43 -102 -1010 103 -1010 -1010 248 290 -1010 -1010 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYYWTMTA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 4.4e-001 0.000000 0.000000 0.000000 1.000000 0.000000 0.454545 0.000000 0.545455 0.181818 0.272727 0.000000 0.545455 0.636364 0.000000 0.000000 0.363636 0.090909 0.000000 0.000000 0.909091 0.545455 0.272727 0.181818 0.000000 0.272727 0.000000 0.000000 0.727273 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYYWTMTA MEME-3 regular expression -------------------------------------------------------------------------------- T[TC][TC][AT]T[AC][TA]A -------------------------------------------------------------------------------- Time 12.34 secs. ******************************************************************************** ******************************************************************************** MOTIF KTTCWTMA MEME-4 width = 8 sites = 6 llr = 72 E-value = 1.6e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif KTTCWTMA MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::325a pos.-specific C :::a::5: probability G 3::::::: matrix T 7aa:78:: bits 2.9 ** * 2.6 ** * 2.4 ** * * 2.1 ** ** * Relative 1.8 ** ** * Entropy 1.5 ****** * (17.2 bits) 1.2 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel TTTCTTAA consensus G A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTCWTMA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:41444974-41445054 24 1.17e-06 ACCACCCTGC TTTCTTCA CGTTTTAACT chr1:17223274-17223354 72 1.17e-06 ATATCTAGTG TTTCTTCA G chr2:30884493-30884573 71 2.81e-06 GAGATCTCCA TTTCATCA GT chr1:207779819-207779899 10 2.81e-06 AGAGGAAAA GTTCTTAA CTGTTGCAGT chr5:131826328-131826408 27 2.81e-06 AGGTTGCCGG GTTCTTAA GGCCGCCGGG chr8:63951282-63951362 69 3.79e-06 TCCCGCCGCC TTTCAAAA GCTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTCWTMA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:41444974-41445054 1.2e-06 23_[+4]_49 chr1:17223274-17223354 1.2e-06 71_[+4]_1 chr2:30884493-30884573 2.8e-06 70_[+4]_2 chr1:207779819-207779899 2.8e-06 9_[+4]_63 chr5:131826328-131826408 2.8e-06 26_[+4]_46 chr8:63951282-63951362 3.8e-06 68_[+4]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTCWTMA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KTTCWTMA width=8 seqs=6 chr17:41444974-41445054 ( 24) TTTCTTCA 1 chr1:17223274-17223354 ( 72) TTTCTTCA 1 chr2:30884493-30884573 ( 71) TTTCATCA 1 chr1:207779819-207779899 ( 10) GTTCTTAA 1 chr5:131826328-131826408 ( 27) GTTCTTAA 1 chr8:63951282-63951362 ( 69) TTTCAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTCWTMA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.67 E= 1.6e+002 -923 -923 -14 236 -923 -923 -923 294 -923 -923 -923 294 -923 144 -923 -923 131 -923 -923 236 32 -923 -923 268 190 44 -923 -923 290 -923 -923 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTCWTMA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 1.6e+002 0.000000 0.000000 0.333333 0.666667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.000000 0.000000 0.666667 0.166667 0.000000 0.000000 0.833333 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTCWTMA MEME-4 regular expression -------------------------------------------------------------------------------- [TG]TTC[TA]T[AC]A -------------------------------------------------------------------------------- Time 16.02 secs. ******************************************************************************** ******************************************************************************** MOTIF TVTTTTGT MEME-5 width = 8 sites = 3 llr = 40 E-value = 6.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TVTTTTGT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :3:::::: pos.-specific C :3:::::: probability G :3::::a: matrix T a:aaaa:a bits 2.9 * **** * 2.6 * **** * 2.4 * **** * 2.1 * **** * Relative 1.8 * **** * Entropy 1.5 * ****** (19.4 bits) 1.2 * ****** 0.9 * ****** 0.6 * ****** 0.3 ******** 0.0 -------- Multilevel TATTTTGT consensus C sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TVTTTTGT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr22:43011835-43011915 68 2.38e-07 GTTCGGCACA TATTTTGT CCAAT chr12:7054102-7054182 35 1.55e-06 aacacgaaat tgttttgt ttcatataca chr9:86536365-86536445 4 1.55e-06 GCG TCTTTTGT TGTCGCGAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TVTTTTGT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:43011835-43011915 2.4e-07 67_[+5]_5 chr12:7054102-7054182 1.5e-06 34_[+5]_38 chr9:86536365-86536445 1.5e-06 3_[+5]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TVTTTTGT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TVTTTTGT width=8 seqs=3 chr22:43011835-43011915 ( 68) TATTTTGT 1 chr12:7054102-7054182 ( 35) TGTTTTGT 1 chr9:86536365-86536445 ( 4) TCTTTTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TVTTTTGT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.0179 E= 6.5e+002 -823 -823 -823 294 131 -14 -14 -823 -823 -823 -823 294 -823 -823 -823 294 -823 -823 -823 294 -823 -823 -823 294 -823 -823 144 -823 -823 -823 -823 294 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TVTTTTGT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 6.5e+002 0.000000 0.000000 0.000000 1.000000 0.333333 0.333333 0.333333 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TVTTTTGT MEME-5 regular expression -------------------------------------------------------------------------------- T[ACG]TTTTGT -------------------------------------------------------------------------------- Time 19.59 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:33371953-33372033 3.29e-01 80 chr21:46494565-46494645 7.69e-01 80 chr16:87902971-87903051 9.50e-01 80 chr13:42614419-42614499 6.18e-01 80 chrX:153686752-153686832 9.34e-01 80 chr14:35024138-35024218 5.16e-08 47_[+2(2.90e-06)]_5_[+2(3.63e-06)]_\ 12 chr11:62608079-62608159 1.36e-10 24_[+1(8.67e-06)]_19_[+3(1.54e-06)]_\ 6_[+2(2.02e-06)]_7 chr14:35017154-35017234 4.88e-06 59_[+2(3.45e-06)]_13 chr7:1498944-1499024 9.99e-01 80 chr16:88851488-88851568 4.96e-01 80 chr15:89456482-89456562 1.00e+00 80 chr17:45928375-45928455 1.00e+00 80 chr5:139726069-139726149 6.51e-03 17_[+5(6.65e-05)]_55 chr22:22874486-22874566 8.77e-06 54_[+1(1.49e-05)]_18 chr16:4421863-4421943 2.22e-01 80 chr9:38069027-38069107 2.91e-01 80 chr20:57464275-57464355 9.63e-01 80 chr1:45196109-45196189 1.38e-10 9_[+3(5.57e-05)]_29_[+2(6.24e-07)]_\ [+2(3.02e-05)]_9_[+1(6.97e-06)]_1 chr16:89989768-89989848 7.92e-01 80 chr15:30114483-30114563 8.31e-01 80 chr3:118959605-118959685 7.63e-01 80 chr8:74206871-74206951 1.00e+00 80 chr2:239148485-239148565 9.72e-01 80 chr20:60641460-60641540 1.00e+00 80 chr17:56160885-56160965 9.83e-01 80 chr11:130184432-13018451 9.38e-01 80 chr10:126107204-12610728 3.90e-01 80 chr1:17223274-17223354 4.09e-11 11_[+2(1.41e-06)]_37_[+3(1.54e-06)]_\ 7_[+4(1.17e-06)]_1 chr8:145047575-145047655 5.43e-01 80 chr16:1383721-1383801 8.73e-01 80 chr2:111878526-111878606 9.99e-01 80 chr1:28975826-28975906 6.46e-11 2_[+1(9.24e-07)]_22_[+3(2.88e-06)]_\ 20_[+2(2.90e-06)]_12 chr20:43976946-43977026 5.42e-01 80 chr14:35873826-35873906 9.70e-01 80 chr9:20684273-20684353 8.45e-01 80 chr16:81348821-81348901 9.36e-02 80 chr5:127419504-127419584 7.79e-01 80 chr11:62608305-62608385 8.47e-04 42_[+2(1.20e-05)]_30 chr20:60641257-60641337 1.11e-02 80 chr3:101568406-101568486 6.01e-01 80 chr1:86046481-86046561 9.72e-01 80 chr6:26054304-26054384 1.43e-06 6_[+1(4.71e-05)]_1_[+2(1.59e-05)]_\ 57 chr5:131826328-131826408 1.17e-03 26_[+4(2.81e-06)]_46 chr1:180124072-180124152 9.65e-01 80 chr17:41444974-41445054 2.19e-10 23_[+4(1.17e-06)]_[+2(1.89e-05)]_13_\ [+1(4.61e-07)]_20 chr1:231557908-231557988 1.00e+00 80 chr7:73038717-73038797 4.62e-01 80 chr9:86536365-86536445 1.60e-03 3_[+5(1.55e-06)]_69 chrX:153718821-153718901 1.00e+00 80 chr18:19284629-19284709 1.00e+00 80 chr4:113066691-113066771 8.89e-01 80 chr19:4969112-4969192 9.92e-01 80 chr22:38598157-38598237 9.82e-01 80 chr17:80416705-80416785 6.09e-01 80 chr9:35814892-35814972 8.85e-01 80 chr1:45285122-45285202 5.87e-06 11_[+1(1.67e-06)]_61 chr4:77870975-77871055 9.26e-01 80 chr8:11725471-11725551 9.61e-01 80 chr18:61034632-61034712 9.66e-01 80 chr5:73981104-73981184 5.84e-01 80 chr16:11349785-11349865 4.14e-01 80 chr19:16738940-16739020 7.09e-01 80 chr9:131314974-131315054 1.00e+00 80 chr18:33767518-33767598 9.95e-01 80 chr14:24563601-24563681 4.69e-01 80 chr2:113403794-113403874 1.18e-01 80 chr17:43226324-43226404 2.23e-02 80 chr10:3214851-3214931 1.00e+00 80 chr12:113659330-11365941 8.33e-02 80 chr17:76356027-76356107 1.00e+00 80 chr6:144329285-144329365 5.79e-01 80 chr1:9294936-9295016 9.81e-01 80 chr19:33793314-33793394 3.52e-01 80 chr20:5986835-5986915 9.88e-01 80 chr8:125827539-125827619 1.41e-10 26_[+2(6.24e-07)]_21_[+1(4.40e-06)]_\ 1_[+5(6.65e-05)]_8 chr1:201951925-201952005 9.97e-01 80 chr9:77643072-77643152 1.00e+00 80 chr3:101568605-101568685 8.81e-01 80 chr12:6976952-6977032 9.96e-01 80 chr17:79008966-79009046 3.35e-01 80 chr14:103589865-10358994 7.36e-01 80 chr3:141205950-141206030 3.74e-01 80 chr12:7054102-7054182 3.78e-09 34_[+5(1.55e-06)]_[+3(1.54e-06)]_30 chr9:86536566-86536646 1.21e-05 36_[+3(1.05e-05)]_8_[+1(3.42e-05)]_\ 20 chr1:17223035-17223115 1.34e-04 23_[+1(1.29e-05)]_49 chr17:77071043-77071123 9.99e-01 80 chr1:144535173-144535253 9.10e-10 19_[+2(1.41e-06)]_13_[+2(1.30e-05)]_\ 32 chr14:35017360-35017440 1.77e-05 70_[+1(1.12e-06)]_2 chr7:156685729-156685809 1.00e+00 80 chr19:13953454-13953534 3.74e-01 80 chr16:11836463-11836543 9.76e-01 80 chr1:32966135-32966215 7.98e-01 80 chr11:68452043-68452123 9.35e-01 80 chr12:6716426-6716506 2.11e-01 80 chr5:137806346-137806426 6.05e-03 46_[+1(2.51e-05)]_4_[+1(8.60e-05)]_\ 14 chr1:206680949-206681029 1.95e-02 80 chr12:104850797-10485087 9.96e-01 80 chr9:74980007-74980087 7.86e-01 80 chr14:103989087-10398916 1.00e+00 80 chr17:11924259-11924339 3.89e-01 80 chr1:6453337-6453417 9.52e-01 80 chr17:79519265-79519345 9.49e-01 80 chr1:207779619-207779699 4.34e-05 6_[+1(1.29e-05)]_66 chr15:60690064-60690144 6.63e-01 80 chr3:141595544-141595624 9.95e-01 80 chr20:56884861-56884941 1.00e+00 80 chr17:39834511-39834591 6.03e-10 1_[+1(1.49e-05)]_32_[+3(7.92e-07)]_\ 4_[+2(2.64e-06)]_19 chr10:30723142-30723222 6.14e-01 80 chr12:39836797-39836877 1.00e+00 80 chr17:16118687-16118767 9.57e-01 80 chr10:88855174-88855254 9.55e-01 80 chr17:16118888-16118968 8.06e-01 80 chr11:819631-819711 8.98e-01 80 chr8:145150074-145150154 6.24e-01 80 chr3:25824820-25824900 9.59e-01 80 chr12:107349737-10734981 9.56e-01 80 chr9:140500220-140500300 9.99e-01 80 chr4:56502349-56502429 6.77e-01 80 chr12:76953321-76953401 9.18e-01 80 chr11:2906885-2906965 7.81e-01 80 chr2:30454431-30454511 9.46e-01 80 chr8:145515337-145515417 9.16e-01 80 chr7:25019663-25019743 6.05e-01 80 chr14:90422370-90422450 9.98e-01 80 chr3:128206711-128206791 6.28e-01 80 chr17:1552708-1552788 8.28e-01 80 chr14:81687160-81687240 9.26e-01 80 chr4:1713888-1713968 1.00e+00 80 chr21:43430754-43430834 7.75e-01 80 chr12:102224496-10222457 9.83e-01 80 chr20:31350262-31350342 1.00e+00 80 chr14:34420156-34420236 9.19e-01 80 chr11:120107725-12010780 2.90e-03 80 chr1:45266165-45266245 9.34e-01 80 chr1:24104982-24105062 9.62e-01 80 chr1:156084579-156084659 9.48e-02 80 chr4:187644816-187644896 8.78e-01 80 chr19:30206243-30206323 1.00e+00 80 chr21:36260933-36261013 1.49e-02 48_[+3(1.80e-05)]_24 chr2:131113714-131113794 9.51e-01 80 chr22:43011835-43011915 1.54e-09 13_[+1(8.67e-06)]_46_[+5(2.38e-07)]_\ 5 chr1:236445072-236445152 8.76e-01 80 chr7:155089676-155089756 6.87e-01 80 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chr1:169075550-169075630 5.19e-01 80 chr12:39836998-39837078 4.33e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n09.farnam.hpc.yale.internal ********************************************************************************