******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/NFXL1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3:195440573-195440653 1.0000 80 chr9:136355980-136356060 1.0000 80 chr8:144097161-144097241 1.0000 80 chr19:50996037-50996117 1.0000 80 chr9:137099732-137099812 1.0000 80 chr9:141093956-141094036 1.0000 80 chr4:6662205-6662285 1.0000 80 chr16:29606356-29606436 1.0000 80 chr7:506326-506406 1.0000 80 chr3:195439946-195440026 1.0000 80 chr19:35643514-35643594 1.0000 80 chrX:133930539-133930619 1.0000 80 chr22:29516265-29516345 1.0000 80 chr19:19350620-19350700 1.0000 80 chr19:8650887-8650967 1.0000 80 chr22:39417775-39417855 1.0000 80 chr7:5322212-5322292 1.0000 80 chr15:35311782-35311862 1.0000 80 chr7:44346776-44346856 1.0000 80 chr1:228094349-228094429 1.0000 80 chr17:39795949-39796029 1.0000 80 chr3:195887355-195887435 1.0000 80 chr8:144871417-144871497 1.0000 80 chr10:133183839-13318391 1.0000 80 chr9:140427550-140427630 1.0000 80 chr16:49384496-49384576 1.0000 80 chr7:454509-454589 1.0000 80 chr12:131531463-13153154 1.0000 80 chr19:1282064-1282144 1.0000 80 chr16:5472863-5472943 1.0000 80 chr22:39473608-39473688 1.0000 80 chr9:131001775-131001855 1.0000 80 chr5:945078-945158 1.0000 80 chr9:140428837-140428917 1.0000 80 chrX:47240440-47240520 1.0000 80 chr12:122241806-12224188 1.0000 80 chr2:121272788-121272868 1.0000 80 chr2:239886858-239886938 1.0000 80 chr9:96058080-96058160 1.0000 80 chr22:42680081-42680161 1.0000 80 chr7:75619610-75619690 1.0000 80 chr3:197866540-197866620 1.0000 80 chr3:195440159-195440239 1.0000 80 chr17:74664255-74664335 1.0000 80 chr17:75318913-75318993 1.0000 80 chr11:114122437-11412251 1.0000 80 chr9:96058956-96059036 1.0000 80 chr1:5807731-5807811 1.0000 80 chr19:45222233-45222313 1.0000 80 chr17:16359495-16359575 1.0000 80 chr8:143274232-143274312 1.0000 80 chr5:1471736-1471816 1.0000 80 chr20:62151273-62151353 1.0000 80 chr14:94454636-94454716 1.0000 80 chr8:41721990-41722070 1.0000 80 chr9:124991304-124991384 1.0000 80 chr9:140398006-140398086 1.0000 80 chr7:311969-312049 1.0000 80 chr17:64972545-64972625 1.0000 80 chr17:6463968-6464048 1.0000 80 chr11:93126080-93126160 1.0000 80 chr19:13319051-13319131 1.0000 80 chr1:230530542-230530622 1.0000 80 chr7:139998171-139998251 1.0000 80 chr16:87734203-87734283 1.0000 80 chr3:195441260-195441340 1.0000 80 chr10:133579222-13357930 1.0000 80 chr5:139056172-139056252 1.0000 80 chr20:3765785-3765865 1.0000 80 chr9:116449524-116449604 1.0000 80 chrX:2289661-2289741 1.0000 80 chr19:3647004-3647084 1.0000 80 chr20:55285838-55285918 1.0000 80 chr12:49930461-49930541 1.0000 80 chr16:1426252-1426332 1.0000 80 chr12:133164504-13316458 1.0000 80 chr17:3438686-3438766 1.0000 80 chr6:157034842-157034922 1.0000 80 chr5:944646-944726 1.0000 80 chr11:3252795-3252875 1.0000 80 chr11:111783949-11178402 1.0000 80 chr12:108735839-10873591 1.0000 80 chr17:3583334-3583414 1.0000 80 chr7:38398757-38398837 1.0000 80 chr19:39014114-39014194 1.0000 80 chr3:13873784-13873864 1.0000 80 chr8:50064147-50064227 1.0000 80 chr19:17890371-17890451 1.0000 80 chr16:11609550-11609630 1.0000 80 chr17:80268212-80268292 1.0000 80 chr13:32835874-32835954 1.0000 80 chr16:72632776-72632856 1.0000 80 chr19:51315056-51315136 1.0000 80 chr19:52197234-52197314 1.0000 80 chr10:126068980-12606906 1.0000 80 chr6:21965519-21965599 1.0000 80 chr19:6832529-6832609 1.0000 80 chr17:45889673-45889753 1.0000 80 chr3:197252705-197252785 1.0000 80 chr12:654804-654884 1.0000 80 chr14:75721713-75721793 1.0000 80 chr1:801892-801972 1.0000 80 chr1:87381221-87381301 1.0000 80 chr3:193534734-193534814 1.0000 80 chr9:132164299-132164379 1.0000 80 chr19:46916040-46916120 1.0000 80 chr1:802352-802432 1.0000 80 chr5:176523863-176523943 1.0000 80 chr20:60933619-60933699 1.0000 80 chr6:34430385-34430465 1.0000 80 chr21:44830191-44830271 1.0000 80 chr17:79008034-79008114 1.0000 80 chr20:60970889-60970969 1.0000 80 chr1:156639764-156639844 1.0000 80 chr4:40267256-40267336 1.0000 80 chr19:517932-518012 1.0000 80 chr2:171685241-171685321 1.0000 80 chr19:1282767-1282847 1.0000 80 chr11:1947965-1948045 1.0000 80 chr7:38393927-38394007 1.0000 80 chr7:98029764-98029844 1.0000 80 chr1:2367584-2367664 1.0000 80 chr1:29214966-29215046 1.0000 80 chr7:158178796-158178876 1.0000 80 chr12:48297873-48297953 1.0000 80 chr7:485927-486007 1.0000 80 chr16:88525890-88525970 1.0000 80 chr7:157232038-157232118 1.0000 80 chr2:106412262-106412342 1.0000 80 chr7:75698657-75698737 1.0000 80 chr22:45088215-45088295 1.0000 80 chr22:39437214-39437294 1.0000 80 chr2:122368055-122368135 1.0000 80 chr2:172431036-172431116 1.0000 80 chr19:4319208-4319288 1.0000 80 chr9:135450511-135450591 1.0000 80 chr2:238810844-238810924 1.0000 80 chr19:8279763-8279843 1.0000 80 chr19:19644322-19644402 1.0000 80 chr7:101044874-101044954 1.0000 80 chr19:48494736-48494816 1.0000 80 chr19:3697179-3697259 1.0000 80 chr8:144302574-144302654 1.0000 80 chr18:10756008-10756088 1.0000 80 chr1:236917083-236917163 1.0000 80 chr19:52232751-52232831 1.0000 80 chr19:55656693-55656773 1.0000 80 chr15:52411423-52411503 1.0000 80 chr6:75886012-75886092 1.0000 80 chr13:42534745-42534825 1.0000 80 chr22:46421225-46421305 1.0000 80 chr19:1394455-1394535 1.0000 80 chr12:131530518-13153059 1.0000 80 chr12:131917115-13191719 1.0000 80 chr1:197737318-197737398 1.0000 80 chr6:16263228-16263308 1.0000 80 chr11:742738-742818 1.0000 80 chr1:11473865-11473945 1.0000 80 chr19:4786502-4786582 1.0000 80 chr6:168634720-168634800 1.0000 80 chr6:170530528-170530608 1.0000 80 chr19:8018082-8018162 1.0000 80 chr19:48216933-48217013 1.0000 80 chr1:156882805-156882885 1.0000 80 chr18:77492139-77492219 1.0000 80 chr2:11470759-11470839 1.0000 80 chr22:19722482-19722562 1.0000 80 chr7:38389528-38389608 1.0000 80 chr12:132645906-13264598 1.0000 80 chr16:85346315-85346395 1.0000 80 chr6:166303545-166303625 1.0000 80 chr6:32156639-32156719 1.0000 80 chr15:91190262-91190342 1.0000 80 chr7:76049450-76049530 1.0000 80 chr19:3908568-3908648 1.0000 80 chr2:242424814-242424894 1.0000 80 chr19:49697242-49697322 1.0000 80 chr7:5494932-5495012 1.0000 80 chr3:42700739-42700819 1.0000 80 chr7:128808938-128809018 1.0000 80 chr20:36568281-36568361 1.0000 80 chr2:242144700-242144780 1.0000 80 chr7:127866419-127866499 1.0000 80 chr1:26201675-26201755 1.0000 80 chr11:1894826-1894906 1.0000 80 chr12:108991850-10899193 1.0000 80 chr16:57702967-57703047 1.0000 80 chr19:36048952-36049032 1.0000 80 chr7:132246654-132246734 1.0000 80 chr4:185395188-185395268 1.0000 80 chr9:137873755-137873835 1.0000 80 chr17:44967467-44967547 1.0000 80 chr17:79703058-79703138 1.0000 80 chr8:144021218-144021298 1.0000 80 chr19:18848517-18848597 1.0000 80 chr1:228105865-228105945 1.0000 80 chr1:117338235-117338315 1.0000 80 chr17:6366191-6366271 1.0000 80 chr12:133416085-13341616 1.0000 80 chr18:3452670-3452750 1.0000 80 chr19:44284447-44284527 1.0000 80 chr17:80185463-80185543 1.0000 80 chr6:27835524-27835604 1.0000 80 chr2:70129410-70129490 1.0000 80 chr19:741391-741471 1.0000 80 chr8:21040739-21040819 1.0000 80 chr19:1745802-1745882 1.0000 80 chr8:41665453-41665533 1.0000 80 chr7:157568920-157569000 1.0000 80 chr1:228032757-228032837 1.0000 80 chr12:131574126-13157420 1.0000 80 chr19:51315255-51315335 1.0000 80 chr5:149918778-149918858 1.0000 80 chr6:16761633-16761713 1.0000 80 chr16:89060004-89060084 1.0000 80 chr17:62733056-62733136 1.0000 80 chr7:2952598-2952678 1.0000 80 chr19:1165048-1165128 1.0000 80 chr17:79775488-79775568 1.0000 80 chr19:1746373-1746453 1.0000 80 chr19:47162504-47162584 1.0000 80 chr1:26207101-26207181 1.0000 80 chr6:159876967-159877047 1.0000 80 chr8:143342586-143342666 1.0000 80 chr19:900900-900980 1.0000 80 chr7:44961249-44961329 1.0000 80 chr6:11919257-11919337 1.0000 80 chr17:39098892-39098972 1.0000 80 chr16:85750024-85750104 1.0000 80 chr9:134391272-134391352 1.0000 80 chr2:171684783-171684863 1.0000 80 chr6:44106790-44106870 1.0000 80 chr9:116327642-116327722 1.0000 80 chr20:61997499-61997579 1.0000 80 chr10:121302193-12130227 1.0000 80 chr5:172698465-172698545 1.0000 80 chr11:267168-267248 1.0000 80 chr7:155138975-155139055 1.0000 80 chr12:111695503-11169558 1.0000 80 chr6:10415308-10415388 1.0000 80 chr22:36970047-36970127 1.0000 80 chr17:46116865-46116945 1.0000 80 chr14:73166594-73166674 1.0000 80 chr1:43871681-43871761 1.0000 80 chr6:168849114-168849194 1.0000 80 chrX:48325943-48326023 1.0000 80 chr6:168635758-168635838 1.0000 80 chr11:65781287-65781367 1.0000 80 chr19:14346477-14346557 1.0000 80 chr19:49136351-49136431 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_NFXL1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/NFXL1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.2 C 0.303 G 0.3 T 0.197 Background letter frequencies (from file dataset with add-one prior applied): A 0.2 C 0.303 G 0.3 T 0.197 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TCCTCCYT MEME-1 width = 8 sites = 121 llr = 1074 E-value = 1.4e-145 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCCTCCYT MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::::1 pos.-specific C :8a:aa63 probability G :2:::::: matrix T a::a::46 bits 2.3 * * 2.1 * * 1.9 * * 1.6 * **** Relative 1.4 * **** Entropy 1.2 ****** (12.8 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCCTCCCT consensus TC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCTCCYT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:157568920-157569000 62 1.27e-05 ctcctccctg tcctcctt ctccctctcc chr8:21040739-21040819 39 1.27e-05 tccttcctcc tcctcctt ctctccctct chr2:70129410-70129490 16 1.27e-05 tcctccttcc tcctcctt cttcctcctc chr7:132246654-132246734 11 1.27e-05 cttctccttc tcctcctt atcctcctcc chr12:108991850-10899193 47 1.27e-05 ctcccgtccc tcctcctt cctccctccc chr1:26201675-26201755 66 1.27e-05 TCCAGCGAGC TCCTCCTT CCTGCGC chr2:242424814-242424894 14 1.27e-05 ctccctggga tcctcctt tcctaggatc chr19:3908568-3908648 31 1.27e-05 ctcctcttcc tcctcctt cccctcctcc chr7:76049450-76049530 51 1.27e-05 ctcctccacc tcctccTT Cttcttcata chr1:197737318-197737398 37 1.27e-05 ctgctcctcc tcctcctt ctcttcctcc chr19:48494736-48494816 46 1.27e-05 tttcctcccc tcctcctt ttcttctttc chr19:19644322-19644402 64 1.27e-05 ctgttctcct tcctcctT CCCACTTAC chr16:88525890-88525970 65 1.27e-05 ctccccttcc tcctcctt ctcttcat chr17:79008034-79008114 12 1.27e-05 CCTCTCCAGA TCCTCCTT CCCAGGGCCC chr19:46916040-46916120 44 1.27e-05 cgtggagtcc tcctcctt gcggaacacc chr6:21965519-21965599 36 1.27e-05 cttcttcccc tcctcctt cttcccctcc chr3:13873784-13873864 54 1.27e-05 ctcctactct tcctcctt ctgctcctca chr17:3438686-3438766 61 1.27e-05 ctcacttcct tcctcctt ccctctttct chr12:49930461-49930541 69 1.27e-05 cctttctcct tcctcctt tctc chr20:55285838-55285918 35 1.27e-05 cccctttccc tcctcctt cccctcttcc chr10:133579222-13357930 51 1.27e-05 ctcctcctgc tcctcctt ctgctcctcc chr17:6463968-6464048 35 1.27e-05 cctctcatta tcctcctt ctcattctct chr9:124991304-124991384 5 1.27e-05 tccc tcctcctt gtcctcctcc chr8:41721990-41722070 35 1.27e-05 CATCCCTGGC TCCTCCTT GCACATGAGA chr2:239886858-239886938 60 1.27e-05 ccttcctctt tcctcctt cctcctccct chr3:195887355-195887435 54 1.27e-05 CCGGAGTGAG TCCTCCTT CTAGATGGAA chr1:228094349-228094429 61 1.27e-05 ccactctcct tcctcctt tcctgttcct chr19:19350620-19350700 53 1.27e-05 actcctcccc tcctcctt ccattcatct chr19:14346477-14346557 52 3.22e-05 cgctcctctg tcctccct gctcctctgt chr12:111695503-11169558 54 3.22e-05 cttctcctct tcctccct ctttctcccc chr6:44106790-44106870 47 3.22e-05 tctcttgcct tcctccct cctcagatat chr2:171684783-171684863 67 3.22e-05 gctgtcatct tcctccct ctgctg chr16:89060004-89060084 59 3.22e-05 ctctcctccc tcctccct ccctcttccc chr1:228032757-228032837 48 3.22e-05 TGGTCAGGAC TCCTCCCT ATGTGTGGTG chr19:44284447-44284527 62 3.22e-05 ccccaacctc tcctccct cagatccagg chr19:18848517-18848597 55 3.22e-05 ctcctcctcc tcctccct tttcctcctc chr4:185395188-185395268 58 3.22e-05 ctcctcctcc tcctccct ctctacctcc chr6:166303545-166303625 65 3.22e-05 tctccctcac tcctccct catcctGT chr12:132645906-13264598 66 3.22e-05 cctcacctcc tcctccct cacctcc chr1:11473865-11473945 64 3.22e-05 ccctctttcc tcctccct cctccctct chr12:131530518-13153059 61 3.22e-05 CTGGTCAGTG TCCTCCCT GGTCAGCACT chr19:1394455-1394535 58 3.22e-05 GGGACCGTGC TCCTCCCT CCCTCCCTGC chr1:236917083-236917163 6 3.22e-05 Actcc tcctccct atcctccctc chr2:106412262-106412342 14 3.22e-05 GACCTCTCCC TCCTCCCT AACTTCCTTC chr1:2367584-2367664 57 3.22e-05 ctctgtttcc tcctccct ccttccttcc chr7:38393927-38394007 45 3.22e-05 TCCCAAGCCT TCCTCCCT CCCAGAAGGA chr11:1947965-1948045 38 3.22e-05 CTCTCTTGCT TCCTCCCT CTTGCCCACC chr2:171685241-171685321 51 3.22e-05 gtcctcaccc tcctccct ctgctgtcct chr21:44830191-44830271 48 3.22e-05 ccctcctctc tcctccct ccctcctctt chr6:34430385-34430465 66 3.22e-05 GAAGGCAGAG TCCTCCCT GTGCCCT chr17:45889673-45889753 59 3.22e-05 CTTGATGTCC TCCTCCCT CTAAGCTGGC chr11:111783949-11178402 15 3.22e-05 ctcctcctcc tcctccCT TACCTTTCCG chr16:1426252-1426332 51 3.22e-05 CCACTCTCCC TCCTCCCT CCAGGGCTGG chr3:195441260-195441340 5 3.22e-05 AGTC TCCTCCCT GACTGGTCCT chr1:230530542-230530622 23 3.22e-05 ctcctcacgc tcctccct atccccgagc chr11:93126080-93126160 8 3.22e-05 ctccttc tcctccct cctcttcctc chr17:64972545-64972625 69 3.22e-05 atcctctcca tcctccct cttt chr9:96058956-96059036 35 3.22e-05 cccctcacct tcctccct ctctatcctc chr17:74664255-74664335 20 3.22e-05 cagctctccc tcctccct gcgctgagtc chr3:195440159-195440239 32 3.22e-05 ctcccctaac tcctccct gacccgtcct chr2:121272788-121272868 40 3.22e-05 tgactctccc tcctccct gactctccct chr12:131531463-13153154 34 3.22e-05 CTGGTCAGTG TCCTCCCT GGTCAATGCT chr16:49384496-49384576 22 3.22e-05 aTGCTCTCCC TCCTCCCT CTCATTCCTT chr3:195439946-195440026 40 3.22e-05 cagccctaac tcctccct gaccagtcct chr7:506326-506406 41 3.22e-05 tccttcactc tcctccct caccctcatc chr9:137099732-137099812 73 3.22e-05 tccccactGG TCCTCCCT chr3:195440573-195440653 1 3.22e-05 . tcctccct gaccagtcct chr17:39098892-39098972 39 5.17e-05 ctcttcttct tcctcctc ctcccccctc chr18:3452670-3452750 19 5.17e-05 TCCTCCGCCG TCCTCCTC TAAAACTACC chr1:228105865-228105945 54 5.17e-05 cccagggccc tcctcctc ccgagggccc chr17:44967467-44967547 27 5.17e-05 TCATCCCTCC TCCTCCTC GCTCCTCTTC chr20:36568281-36568361 7 5.17e-05 CTGCCC TCCTCCTC TCTGAGAGAG chr19:49697242-49697322 26 5.17e-05 tttctcttcc tcctcctc ATCCTCCTCC chr15:91190262-91190342 45 5.17e-05 tcctccacaa tcctcctc ttattccaca chr22:45088215-45088295 19 5.17e-05 tcctgggggc tcctcctc ccagggctcc chr20:60933619-60933699 58 5.17e-05 CTCCGGCAGG TCCTCCTC CTGCGGTGCT chr5:176523863-176523943 29 5.17e-05 ctcctcctct tcctcctc ctcctcttcc chr19:6832529-6832609 4 5.17e-05 ctt tcctcctc ctccccttcc chr19:39014114-39014194 40 5.17e-05 cccatctccc tcctcctc tccatctccc chrX:2289661-2289741 52 5.17e-05 ccatagtccc tcctcctc ccattatcac chr20:3765785-3765865 48 5.17e-05 cccttcctcc tcctcctc ctccccttcc chr9:96058080-96058160 43 5.17e-05 caactcactt tcctcctc tctccatcct chr7:454509-454589 29 5.17e-05 ctccccttcc tcctcctc cccctactcc chr15:35311782-35311862 25 5.17e-05 ctcctcctgc tcctcctc ctcctcctcc chr19:900900-900980 18 8.18e-05 CCGCTCCTGC TCCTCCCC GGAGCGGTTC chr19:1746373-1746453 71 8.18e-05 catcaagttt tcctcccc ag chr17:79775488-79775568 57 8.18e-05 CAGCCCCGGG TCCTCCCC TGCCTGCTCT chr1:802352-802432 39 8.18e-05 TCTCACGTGG TCCTCCCC CTGCACTCAC chr1:801892-801972 58 8.18e-05 CCTCACATGG TCCTCCCC CTGCACTCAC chr10:126068980-12606906 18 8.18e-05 TCCTCCATGc tcctcccc tgactcctca chr7:139998171-139998251 58 8.18e-05 cccctggtgc tcctcccc tggtactcct chr9:140428837-140428917 71 8.18e-05 ACTCCCAGAC TCCTCCCC AA chr9:140427550-140427630 25 8.18e-05 ACCCCTAGAC TCCTCCCC AACAGTGTCC chr12:131574126-13157420 57 9.43e-05 GGCCAGTGAG TGCTCCTT GCCTGGAAGG chr5:945078-945158 22 9.43e-05 GTGCTTCCAG TGCTCCTT ATATTCTCCA chr20:61997499-61997579 24 1.14e-04 cctctcctag tgctccct gccctctcct chr22:46421225-46421305 53 1.14e-04 ctccctgtag tgctccct ctccctGCAG chr22:39437214-39437294 61 1.14e-04 CCTGGGAGGG TGCTCCCT CTGTGTTCTT chr3:197252705-197252785 33 1.14e-04 CAGGTCTCCG TGCTCCCT CTGCAGGTCT chr9:131001775-131001855 48 1.14e-04 AAAAAGTGAG TGCTCCCT GGGCAGAGAA chr22:39473608-39473688 63 1.14e-04 CCTGGGAGGG TGCTCCCT CTGTGTGCTT chr22:39417775-39417855 51 1.14e-04 CCTGAGAGGG TGCTCCCT CTGTGTGCTT chr19:8018082-8018162 68 1.27e-04 GCCATTCCAT tcctccta cctct chr19:49136351-49136431 5 1.46e-04 gcag tcctccca cctcagcctc chr7:127866419-127866499 34 1.46e-04 cccatctcca tcctccca tccatccacc chr22:19722482-19722562 11 1.46e-04 CCTCCCTGAA TCCTCCCA GAGCCCTCCC chr19:48216933-48217013 41 1.46e-04 ctcttcccac tcctccca ctcttcctcc chr7:158178796-158178876 20 1.46e-04 CCAGAGTCCC TCCTCCCA TGCCCCAAGT chr7:38398757-38398837 10 1.46e-04 CCCAAGCCT TCCTCCCA GAAGGGGTGG chr8:144021218-144021298 9 1.66e-04 GACCAGCG TGCTCCTC CACCCACCTG chr9:132164299-132164379 70 1.66e-04 CCTGCAGCcc tgctcctc aac chr17:79703058-79703138 45 1.95e-04 CTCCTGCGGG TGCTCCCC AAATCATCTA chr11:742738-742818 53 1.95e-04 GTGGAGGGGC TGCTCCCC TTTGTATGGT chr8:50064147-50064227 7 1.95e-04 CTGtgg tgctcccc tggtgctcct chr5:944646-944726 62 1.95e-04 TTGTTCCCCA TGCTCCCC ATACTCGTCA chr19:8650887-8650967 30 1.95e-04 TGCACTAATC TGCTCCCC ACCCCCCTGG chr11:65781287-65781367 40 2.28e-04 GTCTGTGCTG TGCTCCCA CTCAGCCCCA chr2:242144700-242144780 42 2.28e-04 TGGATAGGAG TGCTCCCA GGCTGACAGG chr18:77492139-77492219 24 2.28e-04 ACATCAGGAG TGCTCCCA AAATCACCAG chr9:135450511-135450591 35 2.28e-04 GTCCTCCGGG TGCTCCCA GCCCAGGCCG chr17:3583334-3583414 38 2.41e-04 CCACCTGGCT TCCTCCAT CCTACGTCCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCTCCYT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:157568920-157569000 1.3e-05 61_[+1]_11 chr8:21040739-21040819 1.3e-05 38_[+1]_34 chr2:70129410-70129490 1.3e-05 15_[+1]_57 chr7:132246654-132246734 1.3e-05 10_[+1]_62 chr12:108991850-10899193 1.3e-05 46_[+1]_26 chr1:26201675-26201755 1.3e-05 65_[+1]_7 chr2:242424814-242424894 1.3e-05 13_[+1]_59 chr19:3908568-3908648 1.3e-05 30_[+1]_42 chr7:76049450-76049530 1.3e-05 50_[+1]_22 chr1:197737318-197737398 1.3e-05 36_[+1]_36 chr19:48494736-48494816 1.3e-05 45_[+1]_27 chr19:19644322-19644402 1.3e-05 63_[+1]_9 chr16:88525890-88525970 1.3e-05 64_[+1]_8 chr17:79008034-79008114 1.3e-05 11_[+1]_61 chr19:46916040-46916120 1.3e-05 43_[+1]_29 chr6:21965519-21965599 1.3e-05 35_[+1]_37 chr3:13873784-13873864 1.3e-05 53_[+1]_19 chr17:3438686-3438766 1.3e-05 60_[+1]_12 chr12:49930461-49930541 1.3e-05 68_[+1]_4 chr20:55285838-55285918 1.3e-05 34_[+1]_38 chr10:133579222-13357930 1.3e-05 50_[+1]_22 chr17:6463968-6464048 1.3e-05 34_[+1]_38 chr9:124991304-124991384 1.3e-05 4_[+1]_68 chr8:41721990-41722070 1.3e-05 34_[+1]_38 chr2:239886858-239886938 1.3e-05 59_[+1]_13 chr3:195887355-195887435 1.3e-05 53_[+1]_19 chr1:228094349-228094429 1.3e-05 60_[+1]_12 chr19:19350620-19350700 1.3e-05 52_[+1]_20 chr19:14346477-14346557 3.2e-05 51_[+1]_21 chr12:111695503-11169558 3.2e-05 53_[+1]_19 chr6:44106790-44106870 3.2e-05 46_[+1]_26 chr2:171684783-171684863 3.2e-05 66_[+1]_6 chr16:89060004-89060084 3.2e-05 58_[+1]_14 chr1:228032757-228032837 3.2e-05 47_[+1]_25 chr19:44284447-44284527 3.2e-05 61_[+1]_11 chr19:18848517-18848597 3.2e-05 54_[+1]_18 chr4:185395188-185395268 3.2e-05 57_[+1]_15 chr6:166303545-166303625 3.2e-05 64_[+1]_8 chr12:132645906-13264598 3.2e-05 65_[+1]_7 chr1:11473865-11473945 3.2e-05 63_[+1]_9 chr12:131530518-13153059 3.2e-05 60_[+1]_12 chr19:1394455-1394535 3.2e-05 57_[+1]_15 chr1:236917083-236917163 3.2e-05 5_[+1]_67 chr2:106412262-106412342 3.2e-05 13_[+1]_59 chr1:2367584-2367664 3.2e-05 56_[+1]_16 chr7:38393927-38394007 3.2e-05 44_[+1]_28 chr11:1947965-1948045 3.2e-05 37_[+1]_35 chr2:171685241-171685321 3.2e-05 50_[+1]_22 chr21:44830191-44830271 3.2e-05 47_[+1]_25 chr6:34430385-34430465 3.2e-05 65_[+1]_7 chr17:45889673-45889753 3.2e-05 58_[+1]_14 chr11:111783949-11178402 3.2e-05 14_[+1]_58 chr16:1426252-1426332 3.2e-05 50_[+1]_22 chr3:195441260-195441340 3.2e-05 4_[+1]_68 chr1:230530542-230530622 3.2e-05 22_[+1]_50 chr11:93126080-93126160 3.2e-05 7_[+1]_65 chr17:64972545-64972625 3.2e-05 68_[+1]_4 chr9:96058956-96059036 3.2e-05 34_[+1]_38 chr17:74664255-74664335 3.2e-05 19_[+1]_53 chr3:195440159-195440239 3.2e-05 31_[+1]_41 chr2:121272788-121272868 3.2e-05 39_[+1]_33 chr12:131531463-13153154 3.2e-05 33_[+1]_39 chr16:49384496-49384576 3.2e-05 21_[+1]_51 chr3:195439946-195440026 3.2e-05 39_[+1]_33 chr7:506326-506406 3.2e-05 40_[+1]_32 chr9:137099732-137099812 3.2e-05 72_[+1] chr3:195440573-195440653 3.2e-05 [+1]_72 chr17:39098892-39098972 5.2e-05 38_[+1]_34 chr18:3452670-3452750 5.2e-05 18_[+1]_54 chr1:228105865-228105945 5.2e-05 53_[+1]_19 chr17:44967467-44967547 5.2e-05 26_[+1]_46 chr20:36568281-36568361 5.2e-05 6_[+1]_66 chr19:49697242-49697322 5.2e-05 25_[+1]_47 chr15:91190262-91190342 5.2e-05 44_[+1]_28 chr22:45088215-45088295 5.2e-05 18_[+1]_54 chr20:60933619-60933699 5.2e-05 57_[+1]_15 chr5:176523863-176523943 5.2e-05 28_[+1]_44 chr19:6832529-6832609 5.2e-05 3_[+1]_69 chr19:39014114-39014194 5.2e-05 39_[+1]_33 chrX:2289661-2289741 5.2e-05 51_[+1]_21 chr20:3765785-3765865 5.2e-05 47_[+1]_25 chr9:96058080-96058160 5.2e-05 42_[+1]_30 chr7:454509-454589 5.2e-05 28_[+1]_44 chr15:35311782-35311862 5.2e-05 24_[+1]_48 chr19:900900-900980 8.2e-05 17_[+1]_55 chr19:1746373-1746453 8.2e-05 70_[+1]_2 chr17:79775488-79775568 8.2e-05 56_[+1]_16 chr1:802352-802432 8.2e-05 38_[+1]_34 chr1:801892-801972 8.2e-05 57_[+1]_15 chr10:126068980-12606906 8.2e-05 17_[+1]_55 chr7:139998171-139998251 8.2e-05 57_[+1]_15 chr9:140428837-140428917 8.2e-05 70_[+1]_2 chr9:140427550-140427630 8.2e-05 24_[+1]_48 chr12:131574126-13157420 9.4e-05 56_[+1]_16 chr5:945078-945158 9.4e-05 21_[+1]_51 chr20:61997499-61997579 0.00011 23_[+1]_49 chr22:46421225-46421305 0.00011 52_[+1]_20 chr22:39437214-39437294 0.00011 60_[+1]_12 chr3:197252705-197252785 0.00011 32_[+1]_40 chr9:131001775-131001855 0.00011 47_[+1]_25 chr22:39473608-39473688 0.00011 62_[+1]_10 chr22:39417775-39417855 0.00011 50_[+1]_22 chr19:8018082-8018162 0.00013 67_[+1]_5 chr19:49136351-49136431 0.00015 4_[+1]_68 chr7:127866419-127866499 0.00015 33_[+1]_39 chr22:19722482-19722562 0.00015 10_[+1]_62 chr19:48216933-48217013 0.00015 40_[+1]_32 chr7:158178796-158178876 0.00015 19_[+1]_53 chr7:38398757-38398837 0.00015 9_[+1]_63 chr8:144021218-144021298 0.00017 8_[+1]_64 chr9:132164299-132164379 0.00017 69_[+1]_3 chr17:79703058-79703138 0.0002 44_[+1]_28 chr11:742738-742818 0.0002 52_[+1]_20 chr8:50064147-50064227 0.0002 6_[+1]_66 chr5:944646-944726 0.0002 61_[+1]_11 chr19:8650887-8650967 0.0002 29_[+1]_43 chr11:65781287-65781367 0.00023 39_[+1]_33 chr2:242144700-242144780 0.00023 41_[+1]_31 chr18:77492139-77492219 0.00023 23_[+1]_49 chr9:135450511-135450591 0.00023 34_[+1]_38 chr17:3583334-3583414 0.00024 37_[+1]_35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCTCCYT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCCTCCYT width=8 seqs=121 chr7:157568920-157569000 ( 62) TCCTCCTT 1 chr8:21040739-21040819 ( 39) TCCTCCTT 1 chr2:70129410-70129490 ( 16) TCCTCCTT 1 chr7:132246654-132246734 ( 11) TCCTCCTT 1 chr12:108991850-10899193 ( 47) TCCTCCTT 1 chr1:26201675-26201755 ( 66) TCCTCCTT 1 chr2:242424814-242424894 ( 14) TCCTCCTT 1 chr19:3908568-3908648 ( 31) TCCTCCTT 1 chr7:76049450-76049530 ( 51) TCCTCCTT 1 chr1:197737318-197737398 ( 37) TCCTCCTT 1 chr19:48494736-48494816 ( 46) TCCTCCTT 1 chr19:19644322-19644402 ( 64) TCCTCCTT 1 chr16:88525890-88525970 ( 65) TCCTCCTT 1 chr17:79008034-79008114 ( 12) TCCTCCTT 1 chr19:46916040-46916120 ( 44) TCCTCCTT 1 chr6:21965519-21965599 ( 36) TCCTCCTT 1 chr3:13873784-13873864 ( 54) TCCTCCTT 1 chr17:3438686-3438766 ( 61) TCCTCCTT 1 chr12:49930461-49930541 ( 69) TCCTCCTT 1 chr20:55285838-55285918 ( 35) TCCTCCTT 1 chr10:133579222-13357930 ( 51) TCCTCCTT 1 chr17:6463968-6464048 ( 35) TCCTCCTT 1 chr9:124991304-124991384 ( 5) TCCTCCTT 1 chr8:41721990-41722070 ( 35) TCCTCCTT 1 chr2:239886858-239886938 ( 60) TCCTCCTT 1 chr3:195887355-195887435 ( 54) TCCTCCTT 1 chr1:228094349-228094429 ( 61) TCCTCCTT 1 chr19:19350620-19350700 ( 53) TCCTCCTT 1 chr19:14346477-14346557 ( 52) TCCTCCCT 1 chr12:111695503-11169558 ( 54) TCCTCCCT 1 chr6:44106790-44106870 ( 47) TCCTCCCT 1 chr2:171684783-171684863 ( 67) TCCTCCCT 1 chr16:89060004-89060084 ( 59) TCCTCCCT 1 chr1:228032757-228032837 ( 48) TCCTCCCT 1 chr19:44284447-44284527 ( 62) TCCTCCCT 1 chr19:18848517-18848597 ( 55) TCCTCCCT 1 chr4:185395188-185395268 ( 58) TCCTCCCT 1 chr6:166303545-166303625 ( 65) TCCTCCCT 1 chr12:132645906-13264598 ( 66) TCCTCCCT 1 chr1:11473865-11473945 ( 64) TCCTCCCT 1 chr12:131530518-13153059 ( 61) TCCTCCCT 1 chr19:1394455-1394535 ( 58) TCCTCCCT 1 chr1:236917083-236917163 ( 6) TCCTCCCT 1 chr2:106412262-106412342 ( 14) TCCTCCCT 1 chr1:2367584-2367664 ( 57) TCCTCCCT 1 chr7:38393927-38394007 ( 45) TCCTCCCT 1 chr11:1947965-1948045 ( 38) TCCTCCCT 1 chr2:171685241-171685321 ( 51) TCCTCCCT 1 chr21:44830191-44830271 ( 48) TCCTCCCT 1 chr6:34430385-34430465 ( 66) TCCTCCCT 1 chr17:45889673-45889753 ( 59) TCCTCCCT 1 chr11:111783949-11178402 ( 15) TCCTCCCT 1 chr16:1426252-1426332 ( 51) TCCTCCCT 1 chr3:195441260-195441340 ( 5) TCCTCCCT 1 chr1:230530542-230530622 ( 23) TCCTCCCT 1 chr11:93126080-93126160 ( 8) TCCTCCCT 1 chr17:64972545-64972625 ( 69) TCCTCCCT 1 chr9:96058956-96059036 ( 35) TCCTCCCT 1 chr17:74664255-74664335 ( 20) TCCTCCCT 1 chr3:195440159-195440239 ( 32) TCCTCCCT 1 chr2:121272788-121272868 ( 40) TCCTCCCT 1 chr12:131531463-13153154 ( 34) TCCTCCCT 1 chr16:49384496-49384576 ( 22) TCCTCCCT 1 chr3:195439946-195440026 ( 40) TCCTCCCT 1 chr7:506326-506406 ( 41) TCCTCCCT 1 chr9:137099732-137099812 ( 73) TCCTCCCT 1 chr3:195440573-195440653 ( 1) TCCTCCCT 1 chr17:39098892-39098972 ( 39) TCCTCCTC 1 chr18:3452670-3452750 ( 19) TCCTCCTC 1 chr1:228105865-228105945 ( 54) TCCTCCTC 1 chr17:44967467-44967547 ( 27) TCCTCCTC 1 chr20:36568281-36568361 ( 7) TCCTCCTC 1 chr19:49697242-49697322 ( 26) TCCTCCTC 1 chr15:91190262-91190342 ( 45) TCCTCCTC 1 chr22:45088215-45088295 ( 19) TCCTCCTC 1 chr20:60933619-60933699 ( 58) TCCTCCTC 1 chr5:176523863-176523943 ( 29) TCCTCCTC 1 chr19:6832529-6832609 ( 4) TCCTCCTC 1 chr19:39014114-39014194 ( 40) TCCTCCTC 1 chrX:2289661-2289741 ( 52) TCCTCCTC 1 chr20:3765785-3765865 ( 48) TCCTCCTC 1 chr9:96058080-96058160 ( 43) TCCTCCTC 1 chr7:454509-454589 ( 29) TCCTCCTC 1 chr15:35311782-35311862 ( 25) TCCTCCTC 1 chr19:900900-900980 ( 18) TCCTCCCC 1 chr19:1746373-1746453 ( 71) TCCTCCCC 1 chr17:79775488-79775568 ( 57) TCCTCCCC 1 chr1:802352-802432 ( 39) TCCTCCCC 1 chr1:801892-801972 ( 58) TCCTCCCC 1 chr10:126068980-12606906 ( 18) TCCTCCCC 1 chr7:139998171-139998251 ( 58) TCCTCCCC 1 chr9:140428837-140428917 ( 71) TCCTCCCC 1 chr9:140427550-140427630 ( 25) TCCTCCCC 1 chr12:131574126-13157420 ( 57) TGCTCCTT 1 chr5:945078-945158 ( 22) TGCTCCTT 1 chr20:61997499-61997579 ( 24) TGCTCCCT 1 chr22:46421225-46421305 ( 53) TGCTCCCT 1 chr22:39437214-39437294 ( 61) TGCTCCCT 1 chr3:197252705-197252785 ( 33) TGCTCCCT 1 chr9:131001775-131001855 ( 48) TGCTCCCT 1 chr22:39473608-39473688 ( 63) TGCTCCCT 1 chr22:39417775-39417855 ( 51) TGCTCCCT 1 chr19:8018082-8018162 ( 68) TCCTCCTA 1 chr19:49136351-49136431 ( 5) TCCTCCCA 1 chr7:127866419-127866499 ( 34) TCCTCCCA 1 chr22:19722482-19722562 ( 11) TCCTCCCA 1 chr19:48216933-48217013 ( 41) TCCTCCCA 1 chr7:158178796-158178876 ( 20) TCCTCCCA 1 chr7:38398757-38398837 ( 10) TCCTCCCA 1 chr8:144021218-144021298 ( 9) TGCTCCTC 1 chr9:132164299-132164379 ( 70) TGCTCCTC 1 chr17:79703058-79703138 ( 45) TGCTCCCC 1 chr11:742738-742818 ( 53) TGCTCCCC 1 chr8:50064147-50064227 ( 7) TGCTCCCC 1 chr5:944646-944726 ( 62) TGCTCCCC 1 chr19:8650887-8650967 ( 30) TGCTCCCC 1 chr11:65781287-65781367 ( 40) TGCTCCCA 1 chr2:242144700-242144780 ( 42) TGCTCCCA 1 chr18:77492139-77492219 ( 24) TGCTCCCA 1 chr9:135450511-135450591 ( 35) TGCTCCCA 1 chr17:3583334-3583414 ( 38) TCCTCCAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCTCCYT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.37734 E= 1.4e-145 -1356 -1356 -1356 234 -1356 146 -86 -1356 -1356 172 -1356 -1356 -1356 -1356 -1356 234 -1356 172 -1356 -1356 -1356 172 -1356 -1356 -459 93 -1356 107 -114 -15 -1356 169 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCTCCYT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 121 E= 1.4e-145 0.000000 0.000000 0.000000 1.000000 0.000000 0.834711 0.165289 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.008264 0.578512 0.000000 0.413223 0.090909 0.272727 0.000000 0.636364 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCTCCYT MEME-1 regular expression -------------------------------------------------------------------------------- TCCTCC[CT][TC] -------------------------------------------------------------------------------- Time 4.96 secs. ******************************************************************************** ******************************************************************************** MOTIF GGAGGAGG MEME-2 width = 8 sites = 102 llr = 976 E-value = 1.2e-141 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGAGGAGG MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::a::a:: pos.-specific C :::::::1 probability G aa:aa:a9 matrix T :::::::: bits 2.3 * * 2.1 * * 1.9 * * 1.6 *** ** Relative 1.4 ******* Entropy 1.2 ******** (13.8 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGAGGAGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGAGG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:168635758-168635838 26 2.92e-05 GATAACCAGG GGAGGAGG AGCACGGTGT chrX:48325943-48326023 68 2.92e-05 ACAGCAGGGA GGAGGAGG AGTGG chr6:168849114-168849194 18 2.92e-05 atgaggatgg ggaggagg acggagatgg chr14:73166594-73166674 53 2.92e-05 GCCAGCTGTG GGAGGAGG AAAGAGGGAG chr17:46116865-46116945 18 2.92e-05 aggaagagga ggaggagg gggaggaggg chr6:10415308-10415388 16 2.92e-05 GAGCGCagga ggaggagg aggagggaga chr10:121302193-12130227 32 2.92e-05 gcgaggagga ggaggagg gcgaggagga chr9:116327642-116327722 21 2.92e-05 GAAAGGCGCT ggaggagg aggaagagga chr16:85750024-85750104 53 2.92e-05 ggagaggaag ggaggagg agagagggga chr8:143342586-143342666 27 2.92e-05 aaggagagag ggaggagg gaaggaagga chr19:47162504-47162584 52 2.92e-05 gggctgaggg ggaggagg ggacagaggg chr19:1746373-1746453 16 2.92e-05 ggaggatgga ggaggagg gggaggacga chr7:2952598-2952678 11 2.92e-05 ctatccaggg ggaggagg ggtgatgggg chr8:41665453-41665533 12 2.92e-05 gaggggaaga ggaggagg ggaagaggag chr19:1745802-1745882 14 2.92e-05 Cgaggggagg ggaggagg gggaaggaga chr9:137873755-137873835 16 2.92e-05 GGTTACACAG GGAGGAGG GACGGCAAGA chr11:1894826-1894906 47 2.92e-05 aagaatggaa ggaggagg gaggagggag chr7:128808938-128809018 32 2.92e-05 AGGGGGATGG GGAGGAGG GACATGAGCA chr3:42700739-42700819 11 2.92e-05 gtggacggga ggaggagg aggaggaaga chr6:32156639-32156719 12 2.92e-05 GAACAAGGAG GGAGGAGG GTCAGTCTGC chr16:85346315-85346395 20 2.92e-05 aaggaggaga ggaggagg cggacgagga chr1:156882805-156882885 65 2.92e-05 TGAGGAGTGG GGAGGAGG GAGGAAGG chr6:168634720-168634800 18 2.92e-05 GATAACTAGG GGAGGAGG AGCACGGTGT chr19:4786502-4786582 4 2.92e-05 gag ggaggagg ttggagggag chr6:16263228-16263308 57 2.92e-05 agcagcctgg ggaggagg ggagaggtca chr12:131917115-13191719 21 2.92e-05 aaggggggga ggaggagg aagagaggag chr6:75886012-75886092 26 2.92e-05 tgatgcagtg ggaggagg gagagtgatg chr15:52411423-52411503 71 2.92e-05 tgggagggag ggaggagg tg chr19:55656693-55656773 26 2.92e-05 aagaggaagt ggaggagg aggagggagg chr19:52232751-52232831 38 2.92e-05 aggaaggaga ggaggagg gagggaaaga chr18:10756008-10756088 4 2.92e-05 tga ggaggagg gatggggata chr8:144302574-144302654 35 2.92e-05 GAGGAGCAGG GGAGGAGG CGGCTGGAGA chr19:3697179-3697259 24 2.92e-05 tgagccggat ggaggagg actaagctgg chr7:101044874-101044954 30 2.92e-05 aagaggaaaa ggaggagg cagaagaggg chr19:8279763-8279843 17 2.92e-05 AGGGCAGTGG ggaggagg tgggagggga chr2:172431036-172431116 69 2.92e-05 caggggttgg ggaggagg gaga chr2:122368055-122368135 15 2.92e-05 aagaggagct ggaggagg aagaggaact chr7:75698657-75698737 67 2.92e-05 AAGATCTCTA GGAGGAGG GAAAAG chr7:485927-486007 30 2.92e-05 gaagaaggag ggaggagg gagtggggag chr12:48297873-48297953 21 2.92e-05 aagaggagga ggaggagg aggaggagaa chr1:29214966-29215046 19 2.92e-05 TGCATGTTGG GGAGGAGG GTGGAGATAG chr7:98029764-98029844 16 2.92e-05 gaggggcagg ggaggagg gagagtgaac chr19:517932-518012 14 2.92e-05 ATCCAGGTTG GGAGGAGG CCCAGGCTGG chr4:40267256-40267336 54 2.92e-05 gaagggagag ggaggagg gagaTGGCAG chr14:75721713-75721793 47 2.92e-05 CAGGCATTGG GGAGGAGG GAGAAGAGGA chr13:32835874-32835954 34 2.92e-05 AATCATCCGA GGAGGAGG ACCTCACAGC chr17:80268212-80268292 61 2.92e-05 GATGAGGAGG GGAGGAGG ACCTTGCGGA chr16:11609550-11609630 14 2.92e-05 AGCTgaggag ggaggagg aaggaggagg chr19:17890371-17890451 33 2.92e-05 gtcaagggaa ggaggagg atggggaagg chr12:108735839-10873591 22 2.92e-05 ggagtaagga ggaggagg gaaagggagg chr11:3252795-3252875 40 2.92e-05 agaacaggag ggaggagg aggaggggga chr6:157034842-157034922 22 2.92e-05 ATTCTgaaga ggaggagg aggaggcaga chr19:3647004-3647084 15 2.92e-05 gctcacagag ggaggagg gatgggagga chr9:116449524-116449604 4 2.92e-05 gag ggaggagg gaagcagaga chr16:87734203-87734283 28 2.92e-05 cagggtggag ggaggagg gagaacgctg chr19:13319051-13319131 22 2.92e-05 aggagggagg ggaggagg gggagtgaga chr7:311969-312049 29 2.92e-05 CTGATGATGT GGAGGAGG GACAGCATCT chr9:140398006-140398086 7 2.92e-05 ggagaa ggaggagg aaggagaagg chr14:94454636-94454716 5 2.92e-05 gatg ggaggagg aaatgggagg chr20:62151273-62151353 51 2.92e-05 TGCGCTGGGG GGAGGAGG AGAGGGAGGA chr5:1471736-1471816 49 2.92e-05 TCAGAGAGCA GGAGGAGG TTCCAGGAAG chr8:143274232-143274312 39 2.92e-05 ggaggagcag ggaggagg gaggagcaga chr17:16359495-16359575 13 2.92e-05 agaggaggaa ggaggagg aagaggagga chr19:45222233-45222313 42 2.92e-05 agaaggaggt ggaggagg tggaggagga chr1:5807731-5807811 57 2.92e-05 agaaggagat ggaggagg gagaaaggaa chr11:114122437-11412251 31 2.92e-05 ACAGTGGAga ggaggagg aggaggagca chr3:197866540-197866620 9 2.92e-05 gaggtgaa ggaggagg agtcggggag chr22:42680081-42680161 39 2.92e-05 GGAGCAGCGG GGAGGAGG GATGGATGGA chr12:122241806-12224188 41 2.92e-05 gaaggagagg ggaggagg aagaggagga chrX:47240440-47240520 40 2.92e-05 aggagcagga ggaggagg agaaagagaa chr16:5472863-5472943 25 2.92e-05 gtagggagtg ggaggagg aaggagggga chr19:1282064-1282144 11 2.92e-05 GAGAGAGGAa ggaggagg aaggggagga chr8:144871417-144871497 28 2.92e-05 agccaggaaa ggaggagg gagagccggg chr7:44346776-44346856 33 2.92e-05 ggtgtgaaca ggaggagg gtatgagcaa chr7:5322212-5322292 42 2.92e-05 ggaggaatgg ggaggagg gagagaggag chr22:29516265-29516345 3 2.92e-05 at ggaggagg gagaggtgat chrX:133930539-133930619 11 2.92e-05 aaggatggag ggaGGAGG GAAGAGGGAG chr16:29606356-29606436 45 2.92e-05 aggaagccga ggaggagg aagagaagga chr4:6662205-6662285 10 2.92e-05 ggaggagaa ggaggagg cagaggaggt chr9:141093956-141094036 12 2.92e-05 tcggggagaa ggaggagg agtcggggag chr19:50996037-50996117 16 2.92e-05 ggaggaaaga ggaggagg aaagaggaag chr8:144097161-144097241 24 2.92e-05 CATGTGAGGA GGAGGAGG GAGTCCTGTG chr9:136355980-136356060 15 2.92e-05 aggaggagtt ggaggagg atggaaagga chr11:65781287-65781367 58 5.86e-05 CTCAGCCCCA GGAGGAGC TCATGGGTGG chr22:36970047-36970127 21 5.86e-05 agcactgaag ggaggagc cagtggagga chr7:38389528-38389608 12 5.86e-05 GAAGACAGTA GGAGGAGC TGGTCTTCCT chr12:654804-654884 40 5.86e-05 cgaggtgtgg ggaggagc gaggtgtggg chr17:75318913-75318993 35 5.86e-05 TCTGGCCTGA GGAGGAGC CATGGGGAGG chr10:133183839-13318391 33 5.86e-05 aggagtagag ggaggagc agagggatga chr19:35643514-35643594 60 5.86e-05 aatgtgggaa ggaggagc ccaggaagga chr2:238810844-238810924 64 9.72e-05 AGGGCGAGGT GGAAGAGG GAGGGGTAA chr19:52197234-52197314 3 9.72e-05 gg ggaggatg gagactcaga chr17:39795949-39796029 3 9.72e-05 ga ggaagagg ggacggagga chr2:11470759-11470839 68 1.36e-04 aggagaaggg ggaggaag gagga chr16:72632776-72632856 20 1.36e-04 acactgagtg ggaggaag gagagggaca chr12:133164504-13316458 56 1.36e-04 GAGCACTCTG TGAGGAGG GGCACCTTCC chr6:11919257-11919337 41 1.55e-04 CTGGAAGCTG GGATGAGG GAGGGGTAAA chr18:3452670-3452750 39 1.99e-04 AAACTACCTG GGAGGGGG GAGCCTTCCC chr17:6366191-6366271 56 2.38e-04 GAAGGCAGTG GGAGGATC ATGGACCCCC chr20:36568281-36568361 24 2.38e-04 CTCTGAGAGA GGAAGAGC TCGTGTTCCT chr19:51315056-51315136 70 2.38e-04 TCTCAGGCAG GGAGGATC ATC chr11:267168-267248 64 2.77e-04 catggagGGG Tgaggagc aaggaggag -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGAGG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:168635758-168635838 2.9e-05 25_[+2]_47 chrX:48325943-48326023 2.9e-05 67_[+2]_5 chr6:168849114-168849194 2.9e-05 17_[+2]_55 chr14:73166594-73166674 2.9e-05 52_[+2]_20 chr17:46116865-46116945 2.9e-05 17_[+2]_55 chr6:10415308-10415388 2.9e-05 15_[+2]_57 chr10:121302193-12130227 2.9e-05 31_[+2]_41 chr9:116327642-116327722 2.9e-05 20_[+2]_52 chr16:85750024-85750104 2.9e-05 52_[+2]_20 chr8:143342586-143342666 2.9e-05 26_[+2]_46 chr19:47162504-47162584 2.9e-05 51_[+2]_21 chr19:1746373-1746453 2.9e-05 15_[+2]_57 chr7:2952598-2952678 2.9e-05 10_[+2]_62 chr8:41665453-41665533 2.9e-05 11_[+2]_61 chr19:1745802-1745882 2.9e-05 13_[+2]_59 chr9:137873755-137873835 2.9e-05 15_[+2]_57 chr11:1894826-1894906 2.9e-05 46_[+2]_26 chr7:128808938-128809018 2.9e-05 31_[+2]_41 chr3:42700739-42700819 2.9e-05 10_[+2]_62 chr6:32156639-32156719 2.9e-05 11_[+2]_61 chr16:85346315-85346395 2.9e-05 19_[+2]_53 chr1:156882805-156882885 2.9e-05 64_[+2]_8 chr6:168634720-168634800 2.9e-05 17_[+2]_55 chr19:4786502-4786582 2.9e-05 3_[+2]_69 chr6:16263228-16263308 2.9e-05 56_[+2]_16 chr12:131917115-13191719 2.9e-05 20_[+2]_52 chr6:75886012-75886092 2.9e-05 25_[+2]_47 chr15:52411423-52411503 2.9e-05 70_[+2]_2 chr19:55656693-55656773 2.9e-05 25_[+2]_47 chr19:52232751-52232831 2.9e-05 37_[+2]_35 chr18:10756008-10756088 2.9e-05 3_[+2]_69 chr8:144302574-144302654 2.9e-05 34_[+2]_38 chr19:3697179-3697259 2.9e-05 23_[+2]_49 chr7:101044874-101044954 2.9e-05 29_[+2]_43 chr19:8279763-8279843 2.9e-05 16_[+2]_56 chr2:172431036-172431116 2.9e-05 68_[+2]_4 chr2:122368055-122368135 2.9e-05 14_[+2]_58 chr7:75698657-75698737 2.9e-05 66_[+2]_6 chr7:485927-486007 2.9e-05 29_[+2]_43 chr12:48297873-48297953 2.9e-05 20_[+2]_52 chr1:29214966-29215046 2.9e-05 18_[+2]_54 chr7:98029764-98029844 2.9e-05 15_[+2]_57 chr19:517932-518012 2.9e-05 13_[+2]_59 chr4:40267256-40267336 2.9e-05 53_[+2]_19 chr14:75721713-75721793 2.9e-05 46_[+2]_26 chr13:32835874-32835954 2.9e-05 33_[+2]_39 chr17:80268212-80268292 2.9e-05 60_[+2]_12 chr16:11609550-11609630 2.9e-05 13_[+2]_59 chr19:17890371-17890451 2.9e-05 32_[+2]_40 chr12:108735839-10873591 2.9e-05 21_[+2]_51 chr11:3252795-3252875 2.9e-05 39_[+2]_33 chr6:157034842-157034922 2.9e-05 21_[+2]_51 chr19:3647004-3647084 2.9e-05 14_[+2]_58 chr9:116449524-116449604 2.9e-05 3_[+2]_69 chr16:87734203-87734283 2.9e-05 27_[+2]_45 chr19:13319051-13319131 2.9e-05 21_[+2]_51 chr7:311969-312049 2.9e-05 28_[+2]_44 chr9:140398006-140398086 2.9e-05 6_[+2]_66 chr14:94454636-94454716 2.9e-05 4_[+2]_68 chr20:62151273-62151353 2.9e-05 50_[+2]_22 chr5:1471736-1471816 2.9e-05 48_[+2]_24 chr8:143274232-143274312 2.9e-05 38_[+2]_34 chr17:16359495-16359575 2.9e-05 12_[+2]_60 chr19:45222233-45222313 2.9e-05 41_[+2]_31 chr1:5807731-5807811 2.9e-05 56_[+2]_16 chr11:114122437-11412251 2.9e-05 30_[+2]_42 chr3:197866540-197866620 2.9e-05 8_[+2]_64 chr22:42680081-42680161 2.9e-05 38_[+2]_34 chr12:122241806-12224188 2.9e-05 40_[+2]_32 chrX:47240440-47240520 2.9e-05 39_[+2]_33 chr16:5472863-5472943 2.9e-05 24_[+2]_48 chr19:1282064-1282144 2.9e-05 10_[+2]_62 chr8:144871417-144871497 2.9e-05 27_[+2]_45 chr7:44346776-44346856 2.9e-05 32_[+2]_40 chr7:5322212-5322292 2.9e-05 41_[+2]_31 chr22:29516265-29516345 2.9e-05 2_[+2]_70 chrX:133930539-133930619 2.9e-05 10_[+2]_62 chr16:29606356-29606436 2.9e-05 44_[+2]_28 chr4:6662205-6662285 2.9e-05 9_[+2]_63 chr9:141093956-141094036 2.9e-05 11_[+2]_61 chr19:50996037-50996117 2.9e-05 15_[+2]_57 chr8:144097161-144097241 2.9e-05 23_[+2]_49 chr9:136355980-136356060 2.9e-05 14_[+2]_58 chr11:65781287-65781367 5.9e-05 57_[+2]_15 chr22:36970047-36970127 5.9e-05 20_[+2]_52 chr7:38389528-38389608 5.9e-05 11_[+2]_61 chr12:654804-654884 5.9e-05 39_[+2]_33 chr17:75318913-75318993 5.9e-05 34_[+2]_38 chr10:133183839-13318391 5.9e-05 32_[+2]_40 chr19:35643514-35643594 5.9e-05 59_[+2]_13 chr2:238810844-238810924 9.7e-05 63_[+2]_9 chr19:52197234-52197314 9.7e-05 2_[+2]_70 chr17:39795949-39796029 9.7e-05 2_[+2]_70 chr2:11470759-11470839 0.00014 67_[+2]_5 chr16:72632776-72632856 0.00014 19_[+2]_53 chr12:133164504-13316458 0.00014 55_[+2]_17 chr6:11919257-11919337 0.00015 40_[+2]_32 chr18:3452670-3452750 0.0002 38_[+2]_34 chr17:6366191-6366271 0.00024 55_[+2]_17 chr20:36568281-36568361 0.00024 23_[+2]_49 chr19:51315056-51315136 0.00024 69_[+2]_3 chr11:267168-267248 0.00028 63_[+2]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGAGG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGAGGAGG width=8 seqs=102 chr6:168635758-168635838 ( 26) GGAGGAGG 1 chrX:48325943-48326023 ( 68) GGAGGAGG 1 chr6:168849114-168849194 ( 18) GGAGGAGG 1 chr14:73166594-73166674 ( 53) GGAGGAGG 1 chr17:46116865-46116945 ( 18) GGAGGAGG 1 chr6:10415308-10415388 ( 16) GGAGGAGG 1 chr10:121302193-12130227 ( 32) GGAGGAGG 1 chr9:116327642-116327722 ( 21) GGAGGAGG 1 chr16:85750024-85750104 ( 53) GGAGGAGG 1 chr8:143342586-143342666 ( 27) GGAGGAGG 1 chr19:47162504-47162584 ( 52) GGAGGAGG 1 chr19:1746373-1746453 ( 16) GGAGGAGG 1 chr7:2952598-2952678 ( 11) GGAGGAGG 1 chr8:41665453-41665533 ( 12) GGAGGAGG 1 chr19:1745802-1745882 ( 14) GGAGGAGG 1 chr9:137873755-137873835 ( 16) GGAGGAGG 1 chr11:1894826-1894906 ( 47) GGAGGAGG 1 chr7:128808938-128809018 ( 32) GGAGGAGG 1 chr3:42700739-42700819 ( 11) GGAGGAGG 1 chr6:32156639-32156719 ( 12) GGAGGAGG 1 chr16:85346315-85346395 ( 20) GGAGGAGG 1 chr1:156882805-156882885 ( 65) GGAGGAGG 1 chr6:168634720-168634800 ( 18) GGAGGAGG 1 chr19:4786502-4786582 ( 4) GGAGGAGG 1 chr6:16263228-16263308 ( 57) GGAGGAGG 1 chr12:131917115-13191719 ( 21) GGAGGAGG 1 chr6:75886012-75886092 ( 26) GGAGGAGG 1 chr15:52411423-52411503 ( 71) GGAGGAGG 1 chr19:55656693-55656773 ( 26) GGAGGAGG 1 chr19:52232751-52232831 ( 38) GGAGGAGG 1 chr18:10756008-10756088 ( 4) GGAGGAGG 1 chr8:144302574-144302654 ( 35) GGAGGAGG 1 chr19:3697179-3697259 ( 24) GGAGGAGG 1 chr7:101044874-101044954 ( 30) GGAGGAGG 1 chr19:8279763-8279843 ( 17) GGAGGAGG 1 chr2:172431036-172431116 ( 69) GGAGGAGG 1 chr2:122368055-122368135 ( 15) GGAGGAGG 1 chr7:75698657-75698737 ( 67) GGAGGAGG 1 chr7:485927-486007 ( 30) GGAGGAGG 1 chr12:48297873-48297953 ( 21) GGAGGAGG 1 chr1:29214966-29215046 ( 19) GGAGGAGG 1 chr7:98029764-98029844 ( 16) GGAGGAGG 1 chr19:517932-518012 ( 14) GGAGGAGG 1 chr4:40267256-40267336 ( 54) GGAGGAGG 1 chr14:75721713-75721793 ( 47) GGAGGAGG 1 chr13:32835874-32835954 ( 34) GGAGGAGG 1 chr17:80268212-80268292 ( 61) GGAGGAGG 1 chr16:11609550-11609630 ( 14) GGAGGAGG 1 chr19:17890371-17890451 ( 33) GGAGGAGG 1 chr12:108735839-10873591 ( 22) GGAGGAGG 1 chr11:3252795-3252875 ( 40) GGAGGAGG 1 chr6:157034842-157034922 ( 22) GGAGGAGG 1 chr19:3647004-3647084 ( 15) GGAGGAGG 1 chr9:116449524-116449604 ( 4) GGAGGAGG 1 chr16:87734203-87734283 ( 28) GGAGGAGG 1 chr19:13319051-13319131 ( 22) GGAGGAGG 1 chr7:311969-312049 ( 29) GGAGGAGG 1 chr9:140398006-140398086 ( 7) GGAGGAGG 1 chr14:94454636-94454716 ( 5) GGAGGAGG 1 chr20:62151273-62151353 ( 51) GGAGGAGG 1 chr5:1471736-1471816 ( 49) GGAGGAGG 1 chr8:143274232-143274312 ( 39) GGAGGAGG 1 chr17:16359495-16359575 ( 13) GGAGGAGG 1 chr19:45222233-45222313 ( 42) GGAGGAGG 1 chr1:5807731-5807811 ( 57) GGAGGAGG 1 chr11:114122437-11412251 ( 31) GGAGGAGG 1 chr3:197866540-197866620 ( 9) GGAGGAGG 1 chr22:42680081-42680161 ( 39) GGAGGAGG 1 chr12:122241806-12224188 ( 41) GGAGGAGG 1 chrX:47240440-47240520 ( 40) GGAGGAGG 1 chr16:5472863-5472943 ( 25) GGAGGAGG 1 chr19:1282064-1282144 ( 11) GGAGGAGG 1 chr8:144871417-144871497 ( 28) GGAGGAGG 1 chr7:44346776-44346856 ( 33) GGAGGAGG 1 chr7:5322212-5322292 ( 42) GGAGGAGG 1 chr22:29516265-29516345 ( 3) GGAGGAGG 1 chrX:133930539-133930619 ( 11) GGAGGAGG 1 chr16:29606356-29606436 ( 45) GGAGGAGG 1 chr4:6662205-6662285 ( 10) GGAGGAGG 1 chr9:141093956-141094036 ( 12) GGAGGAGG 1 chr19:50996037-50996117 ( 16) GGAGGAGG 1 chr8:144097161-144097241 ( 24) GGAGGAGG 1 chr9:136355980-136356060 ( 15) GGAGGAGG 1 chr11:65781287-65781367 ( 58) GGAGGAGC 1 chr22:36970047-36970127 ( 21) GGAGGAGC 1 chr7:38389528-38389608 ( 12) GGAGGAGC 1 chr12:654804-654884 ( 40) GGAGGAGC 1 chr17:75318913-75318993 ( 35) GGAGGAGC 1 chr10:133183839-13318391 ( 33) GGAGGAGC 1 chr19:35643514-35643594 ( 60) GGAGGAGC 1 chr2:238810844-238810924 ( 64) GGAAGAGG 1 chr19:52197234-52197314 ( 3) GGAGGATG 1 chr17:39795949-39796029 ( 3) GGAAGAGG 1 chr2:11470759-11470839 ( 68) GGAGGAAG 1 chr16:72632776-72632856 ( 20) GGAGGAAG 1 chr12:133164504-13316458 ( 56) TGAGGAGG 1 chr6:11919257-11919337 ( 41) GGATGAGG 1 chr18:3452670-3452750 ( 39) GGAGGGGG 1 chr17:6366191-6366271 ( 56) GGAGGATC 1 chr20:36568281-36568361 ( 24) GGAAGAGC 1 chr19:51315056-51315136 ( 70) GGAGGATC 1 chr11:267168-267248 ( 64) TGAGGAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGAGG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.98805 E= 1.2e-141 -1332 -1332 171 -333 -1332 -1332 174 -1332 232 -1332 -1332 -1332 -276 -1332 168 -433 -1332 -1332 174 -1332 231 -1332 -493 -1332 -335 -1332 166 -274 -1332 -149 157 -1332 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGAGG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 102 E= 1.2e-141 0.000000 0.000000 0.980392 0.019608 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.029412 0.000000 0.960784 0.009804 0.000000 0.000000 1.000000 0.000000 0.990196 0.000000 0.009804 0.000000 0.019608 0.000000 0.950980 0.029412 0.000000 0.107843 0.892157 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGAGG MEME-2 regular expression -------------------------------------------------------------------------------- GGAGGAGG -------------------------------------------------------------------------------- Time 8.60 secs. ******************************************************************************** ******************************************************************************** MOTIF RRGGAGGA MEME-3 width = 8 sites = 117 llr = 974 E-value = 2.2e-109 ******************************************************************************** -------------------------------------------------------------------------------- Motif RRGGAGGA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 651:a::a pos.-specific C ::::::2: probability G 359a:a8: matrix T 1::::::: bits 2.3 * * 2.1 * * 1.9 * * 1.6 *** * Relative 1.4 *** * Entropy 1.2 **** * (12.0 bits) 0.9 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AGGGAGGA consensus GA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRGGAGGA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:10415308-10415388 50 1.30e-05 ggaggaggag aaggagga gggagaggag chr11:267168-267248 72 1.30e-05 GGTgaggagc aaggagga g chr10:121302193-12130227 63 1.30e-05 ggaggagggc aaggagga ggagCGGGCT chr6:27835524-27835604 26 1.30e-05 TGAAGCTCCA AAGGAGGA AAACAGCCTC chr16:85346315-85346395 10 1.30e-05 gagaaagag aaggagga gaggaggagg chr19:52232751-52232831 24 1.30e-05 ATAAGGGAag aaggagga aggagaggag chr18:10756008-10756088 21 1.30e-05 ggatggggat aaggagga gggatgcagg chr7:75698657-75698737 38 1.30e-05 GCAGAGCATC AAGGAGGA CTTCCCCTAT chr12:48297873-48297953 37 1.30e-05 ggaggaggag aaggagga ggaACTGTGA chr14:75721713-75721793 64 1.30e-05 GGAGAAGAGG AAGGAGGA GCTGGTTGT chr16:11609550-11609630 22 1.30e-05 agggaggagg aaggagga ggaaaaggga chr12:108735839-10873591 63 1.30e-05 gaggaggagg aaggagga agagaggagg chr6:157034842-157034922 50 1.30e-05 ggaggaggca aaggagga gggaggagga chr9:140398006-140398086 27 1.30e-05 ggagaaggag aaggagga gggagaagga chr17:16359495-16359575 54 1.30e-05 gaagaggaga aaggagga gaagaaggaa chr3:197866540-197866620 27 1.30e-05 agtcggggag aaggagga ggagttgggg chrX:47240440-47240520 8 1.30e-05 gaaagag aaggagga agagcaggag chr16:5472863-5472943 61 1.30e-05 gaggagggag aaggagga tgagggagag chr17:39795949-39796029 42 1.30e-05 agaccagcgg aaggagga ccaggggaag chr16:29606356-29606436 58 1.30e-05 ggaggaagag aaggagga ggaggaggag chr4:6662205-6662285 60 1.30e-05 gaaagaggag aaggagga ggagaaggag chr9:141093956-141094036 30 1.30e-05 agtcggggag aaggagga ggaatcgggg chr19:50996037-50996117 31 1.30e-05 aggaaagagg aaggagga ggagggagga chr9:136355980-136356060 28 1.30e-05 ggaggatgga aaggagga gagggaggag chr8:143342586-143342666 63 3.24e-05 ggatagaggg agggagga gggaaggaga chr7:2952598-2952678 48 3.24e-05 agggaagaag agggagga gggaggggag chr19:51315255-51315335 2 3.24e-05 C AGGGAGGA CCATCTCAGG chr9:137873755-137873835 52 3.24e-05 ATGGTTACAC AGGGAGGA GGGATGGTTA chr11:1894826-1894906 5 3.24e-05 gaga agggagga agggaaggag chr6:32156639-32156719 32 3.24e-05 CAGTCTGCGG AGGGAGGA AGCGGATTGG chr19:4786502-4786582 34 3.24e-05 aggaggttgg agggagga ggttggaggg chr19:55656693-55656773 37 3.24e-05 gaggaggagg agggagga ggagggagag chr19:8279763-8279843 72 3.24e-05 gggggaggag agggagga g chr7:485927-486007 3 3.24e-05 ag agggagga gaaggaaagg chr4:40267256-40267336 29 3.24e-05 tgagggagag agggagga gcagagggaa chr19:51315056-51315136 11 3.24e-05 CATCTCAGGC AGGGAGGA CCATCCCAGG chr19:17890371-17890451 65 3.24e-05 gagtcaaggg agggagga ggatgggg chr19:3647004-3647084 52 3.24e-05 gtgctcacag agggagga gggatgggag chr9:116449524-116449604 53 3.24e-05 aggagggaag agggagga ggaaggaaga chr16:87734203-87734283 8 3.24e-05 gaggtgg agggagga aacagggtgg chr19:13319051-13319131 8 3.24e-05 CAGCCAC AGggagga gggaggggag chr7:311969-312049 58 3.24e-05 AGGCCCCTGC AGGGAGGA GCGGGGAGGG chr14:94454636-94454716 41 3.24e-05 aaggagggga agggagga gcagatggga chr20:62151273-62151353 61 3.24e-05 GGAGGAGGAG AGGGAGGA CGCCTTTCTG chr5:1471736-1471816 23 3.24e-05 CCAGGAGTGG AGGGAGGA CTCCCTGGTC chr8:143274232-143274312 61 3.24e-05 agcagaaagg agggagga gCATAGAACA chr1:5807731-5807811 5 3.24e-05 ggag agggagga aggagaggga chr10:133183839-13318391 19 3.24e-05 agagggatag agggagga gtagagggag chr8:144871417-144871497 11 3.24e-05 GTGTGACCTC Agggagga gccaggaaag chr7:5322212-5322292 70 3.24e-05 gtagaagggg agggagga gga chr22:29516265-29516345 30 3.24e-05 tgatggaaac agggagga gggagaggtg chr11:65781287-65781367 22 5.18e-05 GGAGCACTCT GAGGAGGA GTCTGTGCTG chr6:168635758-168635838 55 5.18e-05 ATAACTAGGG GAGGAGGA GCACATGTGA chr6:168849114-168849194 55 5.18e-05 tggggatgag gaggagga cggggatggt chr9:116327642-116327722 37 5.18e-05 ggaggaagag gaggagga caagtaggag chr16:85750024-85750104 17 5.18e-05 agaggaggaa gaggagga agggaaggaa chr19:1746373-1746453 4 5.18e-05 gag gaggagga tggaggagga chr8:41665453-41665533 38 5.18e-05 aggaggggag gaggagga ggaagaagag chr3:42700739-42700819 60 5.18e-05 ggaagaagag gaggagga cgggcacagt chr6:168634720-168634800 47 5.18e-05 ATAACTAGGG GAGGAGGA GCACATGTGA chr12:131917115-13191719 33 5.18e-05 aggaggaaga gaggagga gaaggaactg chr8:144302574-144302654 22 5.18e-05 CGTCTGCGCA GAGGAGGA GCAGGGGAGG chr7:101044874-101044954 70 5.18e-05 ggaggaggaa gaggagga aga chr2:122368055-122368135 34 5.18e-05 agaggaacta gaggagga ggaggagtta chr17:80268212-80268292 12 5.18e-05 GATTAAGGAA GAGGAGGA CCTCGGGGAG chr19:45222233-45222313 55 5.18e-05 ggaggtggag gaggagga gggatgggga chr11:114122437-11412251 71 5.18e-05 ggagctgcag gaggagga gg chr12:122241806-12224188 51 5.18e-05 ggaggaggaa gaggagga ggaggaggaa chr8:144097161-144097241 43 5.18e-05 AGTCCTGTGT GAGGAGGA GGGAGTGCCG chr5:172698465-172698545 48 8.10e-05 GAGCACCAGT GGGGAGGA CTAACGAAAT chr19:3697179-3697259 5 8.10e-05 gact ggggagga ctgagccgga chr12:654804-654884 21 8.10e-05 agtgaggagt ggggagga gcgaggtgtg chr11:3252795-3252875 13 8.10e-05 ggaggaggcg ggggagga cgatggaaga chr17:75318913-75318993 46 8.10e-05 GAGGAGCCAT GGGGAGGA CGCTGTGCCT chr19:1282064-1282144 21 8.10e-05 ggaggaggaa ggggagga gggaggggac chr7:44346776-44346856 51 8.10e-05 gtatgagcaa ggggagga gggtgtgagc chr7:5494932-5495012 22 9.41e-05 TAGCACTCTC AAGGAGCA CTCAGGGCAC chr1:29214966-29215046 57 9.41e-05 CCGCAAGTCT AAGGAGCA CCTACTGGGA chr3:195887355-195887435 25 9.41e-05 GCACCTCCCT AAGGAGCA CTCCCTCTTT chr1:43871681-43871761 20 1.14e-04 gagcaccaag agggagca cccaaccaag chr7:155138975-155139055 72 1.14e-04 CCCCACACAG AGGGAGCA C chr9:134391272-134391352 44 1.14e-04 ACTTCCTCAC AGGGAGCA CTTCCTCACA chr7:157232038-157232118 13 1.14e-04 catcacctcc agggagca cctccacacc chr12:133164504-13316458 29 1.14e-04 GCACTCTGTG AGGGAGCA CCCTCCTGGG chr6:75886012-75886092 47 1.46e-04 agtgatgcag tgggagga gggagaggga chr7:38393927-38394007 71 1.46e-04 GATTGGTGCC TGGGAGGA CC chr19:517932-518012 40 1.46e-04 GGGTAGAGGC TGGGAGGA GGGAGATCCA chr16:72632776-72632856 47 1.46e-04 agacactgag tgggagga aggagaggga chr7:38398757-38398837 32 1.46e-04 GGGTGGTGCC TGGGAGGA CCTGCAGAGG chr6:16263228-16263308 43 1.65e-04 tcggcctggc gaggagca gcctggggag chr22:42680081-42680161 27 1.65e-04 GGTGGAGATG GAGGAGCA GCGGGGAGGA chr15:52411423-52411503 30 1.74e-04 agagaagagg aaagagga gataggaagg chr22:36970047-36970127 43 2.03e-04 ggaggagtgt ggggagca cctaaggaga chr19:1745802-1745882 52 2.03e-04 gcagaggaga ggggagca gggagaagga chr17:6366191-6366271 24 2.03e-04 ggagcaccat ggggagca ccCTGGAGCC chr1:117338235-117338315 32 2.03e-04 GCACTTCTCA GGGGAGCA CTCCTCAGCG chr6:170530528-170530608 41 2.03e-04 TCCGGAAGGC GGGGAGCA CTGAAGACTC chr7:75619610-75619690 11 2.03e-04 CCTGCTCTAT GGGGAGCA CTATGCCAGG chr19:52197234-52197314 22 2.16e-04 agactcagag agagagga agatggagac chrX:133930539-133930619 59 2.16e-04 GCAGGAGGAC AGAGAGGA TAAGAGGAGG chr14:73166594-73166674 23 2.25e-04 TGCTCCAAGA AATGAGGA AGTGCTGATG chr7:128808938-128809018 72 2.25e-04 CGGGACGGGG AATGAGGA G chr2:238810844-238810924 26 2.38e-04 GCAAGGCTGG AGTGAGGA TGAGGTGGGG chr17:46116865-46116945 10 2.92e-04 aaaagaaag gaagagga ggaggagggg chr6:159876967-159877047 40 3.24e-04 caccaccacc tgggagca ctaccaccac chr1:26207101-26207181 34 3.24e-04 CACAGGGCAA TGGGAGCA CAATGCAGCA chr19:4319208-4319288 45 3.24e-04 GCTGGGATTT AGGGAGTA GCTGGGATTT chr17:74664255-74664335 73 3.24e-04 ggtcttgacc tgggagca chr9:140428837-140428917 32 3.24e-04 CCACTCCAGA TGGGAGCA CTCCCAGACT chr19:8650887-8650967 67 3.24e-04 TCTTGACTCC AGGGAGTA CTCTCC chr19:47162504-47162584 30 3.73e-04 CAGCTCGTGC Cgggagga cagagggctg chr9:140427550-140427630 51 3.73e-04 CCACTCCAGG CGGGAGGA CTCCCAGAAT chr19:35643514-35643594 26 3.73e-04 gggagagagt ggagagga cggaggtgtt chr1:156882805-156882885 53 3.94e-04 CCAAAGGGAA GATGAGGA GTGGGGAGGA chr2:11470759-11470839 57 4.03e-04 gtctcaaaaa aaggagaa gggggaggaa chr20:60933619-60933699 1 4.35e-04 . AGAGAGCA GGCAGTCCTG chr17:80185463-80185543 26 6.39e-04 CTGCCCTGGG CGGGAGCA CCACCTGCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRGGAGGA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:10415308-10415388 1.3e-05 49_[+3]_23 chr11:267168-267248 1.3e-05 71_[+3]_1 chr10:121302193-12130227 1.3e-05 62_[+3]_10 chr6:27835524-27835604 1.3e-05 25_[+3]_47 chr16:85346315-85346395 1.3e-05 9_[+3]_63 chr19:52232751-52232831 1.3e-05 23_[+3]_49 chr18:10756008-10756088 1.3e-05 20_[+3]_52 chr7:75698657-75698737 1.3e-05 37_[+3]_35 chr12:48297873-48297953 1.3e-05 36_[+3]_36 chr14:75721713-75721793 1.3e-05 63_[+3]_9 chr16:11609550-11609630 1.3e-05 21_[+3]_51 chr12:108735839-10873591 1.3e-05 62_[+3]_10 chr6:157034842-157034922 1.3e-05 49_[+3]_23 chr9:140398006-140398086 1.3e-05 26_[+3]_46 chr17:16359495-16359575 1.3e-05 53_[+3]_19 chr3:197866540-197866620 1.3e-05 26_[+3]_46 chrX:47240440-47240520 1.3e-05 7_[+3]_65 chr16:5472863-5472943 1.3e-05 60_[+3]_12 chr17:39795949-39796029 1.3e-05 41_[+3]_31 chr16:29606356-29606436 1.3e-05 57_[+3]_15 chr4:6662205-6662285 1.3e-05 59_[+3]_13 chr9:141093956-141094036 1.3e-05 29_[+3]_43 chr19:50996037-50996117 1.3e-05 30_[+3]_42 chr9:136355980-136356060 1.3e-05 27_[+3]_45 chr8:143342586-143342666 3.2e-05 62_[+3]_10 chr7:2952598-2952678 3.2e-05 47_[+3]_25 chr19:51315255-51315335 3.2e-05 1_[+3]_71 chr9:137873755-137873835 3.2e-05 51_[+3]_21 chr11:1894826-1894906 3.2e-05 4_[+3]_68 chr6:32156639-32156719 3.2e-05 31_[+3]_41 chr19:4786502-4786582 3.2e-05 33_[+3]_39 chr19:55656693-55656773 3.2e-05 36_[+3]_36 chr19:8279763-8279843 3.2e-05 71_[+3]_1 chr7:485927-486007 3.2e-05 2_[+3]_70 chr4:40267256-40267336 3.2e-05 28_[+3]_44 chr19:51315056-51315136 3.2e-05 10_[+3]_62 chr19:17890371-17890451 3.2e-05 64_[+3]_8 chr19:3647004-3647084 3.2e-05 51_[+3]_21 chr9:116449524-116449604 3.2e-05 52_[+3]_20 chr16:87734203-87734283 3.2e-05 7_[+3]_65 chr19:13319051-13319131 3.2e-05 7_[+3]_65 chr7:311969-312049 3.2e-05 57_[+3]_15 chr14:94454636-94454716 3.2e-05 40_[+3]_32 chr20:62151273-62151353 3.2e-05 60_[+3]_12 chr5:1471736-1471816 3.2e-05 22_[+3]_50 chr8:143274232-143274312 3.2e-05 60_[+3]_12 chr1:5807731-5807811 3.2e-05 4_[+3]_68 chr10:133183839-13318391 3.2e-05 18_[+3]_54 chr8:144871417-144871497 3.2e-05 10_[+3]_62 chr7:5322212-5322292 3.2e-05 69_[+3]_3 chr22:29516265-29516345 3.2e-05 29_[+3]_43 chr11:65781287-65781367 5.2e-05 21_[+3]_51 chr6:168635758-168635838 5.2e-05 54_[+3]_18 chr6:168849114-168849194 5.2e-05 54_[+3]_18 chr9:116327642-116327722 5.2e-05 36_[+3]_36 chr16:85750024-85750104 5.2e-05 16_[+3]_56 chr19:1746373-1746453 5.2e-05 3_[+3]_69 chr8:41665453-41665533 5.2e-05 37_[+3]_35 chr3:42700739-42700819 5.2e-05 59_[+3]_13 chr6:168634720-168634800 5.2e-05 46_[+3]_26 chr12:131917115-13191719 5.2e-05 32_[+3]_40 chr8:144302574-144302654 5.2e-05 21_[+3]_51 chr7:101044874-101044954 5.2e-05 69_[+3]_3 chr2:122368055-122368135 5.2e-05 33_[+3]_39 chr17:80268212-80268292 5.2e-05 11_[+3]_61 chr19:45222233-45222313 5.2e-05 54_[+3]_18 chr11:114122437-11412251 5.2e-05 70_[+3]_2 chr12:122241806-12224188 5.2e-05 50_[+3]_22 chr8:144097161-144097241 5.2e-05 42_[+3]_30 chr5:172698465-172698545 8.1e-05 47_[+3]_25 chr19:3697179-3697259 8.1e-05 4_[+3]_68 chr12:654804-654884 8.1e-05 20_[+3]_52 chr11:3252795-3252875 8.1e-05 12_[+3]_60 chr17:75318913-75318993 8.1e-05 45_[+3]_27 chr19:1282064-1282144 8.1e-05 20_[+3]_52 chr7:44346776-44346856 8.1e-05 50_[+3]_22 chr7:5494932-5495012 9.4e-05 21_[+3]_51 chr1:29214966-29215046 9.4e-05 56_[+3]_16 chr3:195887355-195887435 9.4e-05 24_[+3]_48 chr1:43871681-43871761 0.00011 19_[+3]_53 chr7:155138975-155139055 0.00011 71_[+3]_1 chr9:134391272-134391352 0.00011 43_[+3]_29 chr7:157232038-157232118 0.00011 12_[+3]_60 chr12:133164504-13316458 0.00011 28_[+3]_44 chr6:75886012-75886092 0.00015 46_[+3]_26 chr7:38393927-38394007 0.00015 70_[+3]_2 chr19:517932-518012 0.00015 39_[+3]_33 chr16:72632776-72632856 0.00015 46_[+3]_26 chr7:38398757-38398837 0.00015 31_[+3]_41 chr6:16263228-16263308 0.00017 42_[+3]_30 chr22:42680081-42680161 0.00017 26_[+3]_46 chr15:52411423-52411503 0.00017 29_[+3]_43 chr22:36970047-36970127 0.0002 42_[+3]_30 chr19:1745802-1745882 0.0002 51_[+3]_21 chr17:6366191-6366271 0.0002 23_[+3]_49 chr1:117338235-117338315 0.0002 31_[+3]_41 chr6:170530528-170530608 0.0002 40_[+3]_32 chr7:75619610-75619690 0.0002 10_[+3]_62 chr19:52197234-52197314 0.00022 21_[+3]_51 chrX:133930539-133930619 0.00022 58_[+3]_14 chr14:73166594-73166674 0.00022 22_[+3]_50 chr7:128808938-128809018 0.00022 71_[+3]_1 chr2:238810844-238810924 0.00024 25_[+3]_47 chr17:46116865-46116945 0.00029 9_[+3]_63 chr6:159876967-159877047 0.00032 39_[+3]_33 chr1:26207101-26207181 0.00032 33_[+3]_39 chr19:4319208-4319288 0.00032 44_[+3]_28 chr17:74664255-74664335 0.00032 72_[+3] chr9:140428837-140428917 0.00032 31_[+3]_41 chr19:8650887-8650967 0.00032 66_[+3]_6 chr19:47162504-47162584 0.00037 29_[+3]_43 chr9:140427550-140427630 0.00037 50_[+3]_22 chr19:35643514-35643594 0.00037 25_[+3]_47 chr1:156882805-156882885 0.00039 52_[+3]_20 chr2:11470759-11470839 0.0004 56_[+3]_16 chr20:60933619-60933699 0.00043 [+3]_72 chr17:80185463-80185543 0.00064 25_[+3]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRGGAGGA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RRGGAGGA width=8 seqs=117 chr6:10415308-10415388 ( 50) AAGGAGGA 1 chr11:267168-267248 ( 72) AAGGAGGA 1 chr10:121302193-12130227 ( 63) AAGGAGGA 1 chr6:27835524-27835604 ( 26) AAGGAGGA 1 chr16:85346315-85346395 ( 10) AAGGAGGA 1 chr19:52232751-52232831 ( 24) AAGGAGGA 1 chr18:10756008-10756088 ( 21) AAGGAGGA 1 chr7:75698657-75698737 ( 38) AAGGAGGA 1 chr12:48297873-48297953 ( 37) AAGGAGGA 1 chr14:75721713-75721793 ( 64) AAGGAGGA 1 chr16:11609550-11609630 ( 22) AAGGAGGA 1 chr12:108735839-10873591 ( 63) AAGGAGGA 1 chr6:157034842-157034922 ( 50) AAGGAGGA 1 chr9:140398006-140398086 ( 27) AAGGAGGA 1 chr17:16359495-16359575 ( 54) AAGGAGGA 1 chr3:197866540-197866620 ( 27) AAGGAGGA 1 chrX:47240440-47240520 ( 8) AAGGAGGA 1 chr16:5472863-5472943 ( 61) AAGGAGGA 1 chr17:39795949-39796029 ( 42) AAGGAGGA 1 chr16:29606356-29606436 ( 58) AAGGAGGA 1 chr4:6662205-6662285 ( 60) AAGGAGGA 1 chr9:141093956-141094036 ( 30) AAGGAGGA 1 chr19:50996037-50996117 ( 31) AAGGAGGA 1 chr9:136355980-136356060 ( 28) AAGGAGGA 1 chr8:143342586-143342666 ( 63) AGGGAGGA 1 chr7:2952598-2952678 ( 48) AGGGAGGA 1 chr19:51315255-51315335 ( 2) AGGGAGGA 1 chr9:137873755-137873835 ( 52) AGGGAGGA 1 chr11:1894826-1894906 ( 5) AGGGAGGA 1 chr6:32156639-32156719 ( 32) AGGGAGGA 1 chr19:4786502-4786582 ( 34) AGGGAGGA 1 chr19:55656693-55656773 ( 37) AGGGAGGA 1 chr19:8279763-8279843 ( 72) AGGGAGGA 1 chr7:485927-486007 ( 3) AGGGAGGA 1 chr4:40267256-40267336 ( 29) AGGGAGGA 1 chr19:51315056-51315136 ( 11) AGGGAGGA 1 chr19:17890371-17890451 ( 65) AGGGAGGA 1 chr19:3647004-3647084 ( 52) AGGGAGGA 1 chr9:116449524-116449604 ( 53) AGGGAGGA 1 chr16:87734203-87734283 ( 8) AGGGAGGA 1 chr19:13319051-13319131 ( 8) AGGGAGGA 1 chr7:311969-312049 ( 58) AGGGAGGA 1 chr14:94454636-94454716 ( 41) AGGGAGGA 1 chr20:62151273-62151353 ( 61) AGGGAGGA 1 chr5:1471736-1471816 ( 23) AGGGAGGA 1 chr8:143274232-143274312 ( 61) AGGGAGGA 1 chr1:5807731-5807811 ( 5) AGGGAGGA 1 chr10:133183839-13318391 ( 19) AGGGAGGA 1 chr8:144871417-144871497 ( 11) AGGGAGGA 1 chr7:5322212-5322292 ( 70) AGGGAGGA 1 chr22:29516265-29516345 ( 30) AGGGAGGA 1 chr11:65781287-65781367 ( 22) GAGGAGGA 1 chr6:168635758-168635838 ( 55) GAGGAGGA 1 chr6:168849114-168849194 ( 55) GAGGAGGA 1 chr9:116327642-116327722 ( 37) GAGGAGGA 1 chr16:85750024-85750104 ( 17) GAGGAGGA 1 chr19:1746373-1746453 ( 4) GAGGAGGA 1 chr8:41665453-41665533 ( 38) GAGGAGGA 1 chr3:42700739-42700819 ( 60) GAGGAGGA 1 chr6:168634720-168634800 ( 47) GAGGAGGA 1 chr12:131917115-13191719 ( 33) GAGGAGGA 1 chr8:144302574-144302654 ( 22) GAGGAGGA 1 chr7:101044874-101044954 ( 70) GAGGAGGA 1 chr2:122368055-122368135 ( 34) GAGGAGGA 1 chr17:80268212-80268292 ( 12) GAGGAGGA 1 chr19:45222233-45222313 ( 55) GAGGAGGA 1 chr11:114122437-11412251 ( 71) GAGGAGGA 1 chr12:122241806-12224188 ( 51) GAGGAGGA 1 chr8:144097161-144097241 ( 43) GAGGAGGA 1 chr5:172698465-172698545 ( 48) GGGGAGGA 1 chr19:3697179-3697259 ( 5) GGGGAGGA 1 chr12:654804-654884 ( 21) GGGGAGGA 1 chr11:3252795-3252875 ( 13) GGGGAGGA 1 chr17:75318913-75318993 ( 46) GGGGAGGA 1 chr19:1282064-1282144 ( 21) GGGGAGGA 1 chr7:44346776-44346856 ( 51) GGGGAGGA 1 chr7:5494932-5495012 ( 22) AAGGAGCA 1 chr1:29214966-29215046 ( 57) AAGGAGCA 1 chr3:195887355-195887435 ( 25) AAGGAGCA 1 chr1:43871681-43871761 ( 20) AGGGAGCA 1 chr7:155138975-155139055 ( 72) AGGGAGCA 1 chr9:134391272-134391352 ( 44) AGGGAGCA 1 chr7:157232038-157232118 ( 13) AGGGAGCA 1 chr12:133164504-13316458 ( 29) AGGGAGCA 1 chr6:75886012-75886092 ( 47) TGGGAGGA 1 chr7:38393927-38394007 ( 71) TGGGAGGA 1 chr19:517932-518012 ( 40) TGGGAGGA 1 chr16:72632776-72632856 ( 47) TGGGAGGA 1 chr7:38398757-38398837 ( 32) TGGGAGGA 1 chr6:16263228-16263308 ( 43) GAGGAGCA 1 chr22:42680081-42680161 ( 27) GAGGAGCA 1 chr15:52411423-52411503 ( 30) AAAGAGGA 1 chr22:36970047-36970127 ( 43) GGGGAGCA 1 chr19:1745802-1745882 ( 52) GGGGAGCA 1 chr17:6366191-6366271 ( 24) GGGGAGCA 1 chr1:117338235-117338315 ( 32) GGGGAGCA 1 chr6:170530528-170530608 ( 41) GGGGAGCA 1 chr7:75619610-75619690 ( 11) GGGGAGCA 1 chr19:52197234-52197314 ( 22) AGAGAGGA 1 chrX:133930539-133930619 ( 59) AGAGAGGA 1 chr14:73166594-73166674 ( 23) AATGAGGA 1 chr7:128808938-128809018 ( 72) AATGAGGA 1 chr2:238810844-238810924 ( 26) AGTGAGGA 1 chr17:46116865-46116945 ( 10) GAAGAGGA 1 chr6:159876967-159877047 ( 40) TGGGAGCA 1 chr1:26207101-26207181 ( 34) TGGGAGCA 1 chr19:4319208-4319288 ( 45) AGGGAGTA 1 chr17:74664255-74664335 ( 73) TGGGAGCA 1 chr9:140428837-140428917 ( 32) TGGGAGCA 1 chr19:8650887-8650967 ( 67) AGGGAGTA 1 chr19:47162504-47162584 ( 30) CGGGAGGA 1 chr9:140427550-140427630 ( 51) CGGGAGGA 1 chr19:35643514-35643594 ( 26) GGAGAGGA 1 chr1:156882805-156882885 ( 53) GATGAGGA 1 chr2:11470759-11470839 ( 57) AAGGAGAA 1 chr20:60933619-60933699 ( 1) AGAGAGCA 1 chr17:80185463-80185543 ( 26) CGGGAGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRGGAGGA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.53702 E= 2.2e-109 156 -356 4 -136 118 -1351 87 -1351 -196 -1351 161 -253 -1351 -1351 174 -1351 232 -1351 -1351 -1351 -1351 -1351 174 -1351 -454 -69 139 -353 232 -1351 -1351 -1351 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRGGAGGA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 117 E= 2.2e-109 0.589744 0.025641 0.307692 0.076923 0.452991 0.000000 0.547009 0.000000 0.051282 0.000000 0.914530 0.034188 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.008547 0.188034 0.786325 0.017094 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRGGAGGA MEME-3 regular expression -------------------------------------------------------------------------------- [AG][GA]GGAGGA -------------------------------------------------------------------------------- Time 12.10 secs. ******************************************************************************** ******************************************************************************** MOTIF CTCCTCCY MEME-4 width = 8 sites = 106 llr = 890 E-value = 1.1e-094 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTCCTCCY MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 7:8a:a95 probability G 3:2::::: matrix T 1a::a:15 bits 2.3 * * 2.1 * * 1.9 * * 1.6 * *** Relative 1.4 * **** Entropy 1.2 * **** (12.1 bits) 0.9 ******* 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTCCTCCC consensus G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCTCCY MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:44106790-44106870 30 1.95e-05 cctgctggtc ctcctcct ctcttgcctt chr7:157568920-157569000 25 1.95e-05 tcctctccct ctcctcct ccctcctctt chr8:21040739-21040819 20 1.95e-05 tccccttttc ctcctcct ctccttcctc chr2:70129410-70129490 31 1.95e-05 cttcttcctc ctcctcct ccttcctcTA chr1:228105865-228105945 17 1.95e-05 tcccagggcc ctcctcct ctccagggcc chr19:18848517-18848597 39 1.95e-05 gctgctcctc ctcctcct cctcctcctc chr4:185395188-185395268 48 1.95e-05 CTCCACCAAc ctcctcct cctcctccct chr7:132246654-132246734 22 1.95e-05 cctccttatc ctcctcct catcctcctc chr19:49697242-49697322 37 1.95e-05 cctcctcATC CTCCTCCT GCTCCTGCTC chr19:3908568-3908648 57 1.95e-05 cctcactgtc ctcctcct cctccccttc chr7:76049450-76049530 38 1.95e-05 ctcttcttcc ctcctcct ccacctcctc chr15:91190262-91190342 66 1.95e-05 ttccacaccc ctcctcct ccaaccc chr12:132645906-13264598 17 1.95e-05 cctccctcag ctcctcct ccctcagctc chr1:197737318-197737398 69 1.95e-05 cctccctttc ctcctcct cctc chr19:48494736-48494816 19 1.95e-05 cttccttctc ctcctcct ccccctcctt chr19:19644322-19644402 36 1.95e-05 cttcctctcc ctcctcct ccccctcctc chr22:45088215-45088295 33 1.95e-05 cctcccaggg ctcctcct cccggggctc chr7:158178796-158178876 61 1.95e-05 CCCTGAGTCC CTCCTCCT GTGCCCCAAG chr5:176523863-176523943 58 1.95e-05 cctcctcttc ctcctcct cctcttcctc chr19:6832529-6832609 33 1.95e-05 cttcttcttc ctcctcct ctccttcctc chr6:21965519-21965599 65 1.95e-05 ccttcttccc ctcctcct tcttcccc chr3:13873784-13873864 8 1.95e-05 caggctc ctcctcct ctacaggctt chr19:39014114-39014194 6 1.95e-05 ccttc ctcctcct gtatcttctc chr11:111783949-11178402 61 1.95e-05 GAGCTGCCTT CTCCTCCT AGCTACAGTG chr16:1426252-1426332 33 1.95e-05 CTGGGGCACG CTCCTCCT CCACTCTCCC chr12:49930461-49930541 5 1.95e-05 cctc ctcctcct cctccacctc chr20:55285838-55285918 70 1.95e-05 cttcctctcc ctcctcct ctt chr20:3765785-3765865 65 1.95e-05 cctccccttc ctcctcct cttcctct chr10:133579222-13357930 62 1.95e-05 cctccttctg ctcctcct tctgctcctt chr11:93126080-93126160 57 1.95e-05 cctcctcttc ctcctcct ccgagccctc chr17:6463968-6464048 20 1.95e-05 cctcctcttc ctcctcct ctcattatcc chr9:96058956-96059036 67 1.95e-05 cactttcctc ctcctcct ccatcc chr17:74664255-74664335 49 1.95e-05 tctccctttc ctcctcct cctgcaggtc chr15:35311782-35311862 12 1.95e-05 cctcctcctg ctcctcct cctgctcctc chr19:19350620-19350700 73 1.95e-05 attcatcttt ctcctcct chr2:171684783-171684863 23 4.96e-05 tgtcctcacc ctcctccc tctgctgtcc chr16:89060004-89060084 51 4.96e-05 cccctcctct ctcctccc tcctccctcc chr1:228032757-228032837 69 4.96e-05 TGTGGTGGGG CTCCTCCC TATG chr19:44284447-44284527 24 4.96e-05 gccaaagccc ctcctccc tcagacccaa chr12:108991850-10899193 34 4.96e-05 cctcccgtcc ctcctccc gtccctcctc chr1:26201675-26201755 27 4.96e-05 GCTCCTTCTG CTCCTCCC ACCCTTCCCA chr6:166303545-166303625 31 4.96e-05 tcactcctca ctcctccc tcactcctca chr1:11473865-11473945 49 4.96e-05 tccctctttc ctcctccc tctttcctcc chr19:1394455-1394535 34 4.96e-05 GGGGACTGCG CTCCTCCC TCCTTGGGGA chr1:236917083-236917163 41 4.96e-05 cccctacacc ctcctccc ttcgtttctc chr1:2367584-2367664 14 4.96e-05 tccctgctcc ctcctccc ttcctccctg chr2:171685241-171685321 4 4.96e-05 acc ctcctccc tctgctgtcc chr21:44830191-44830271 8 4.96e-05 ctcctct ctcctccc tcctctctct chr17:45889673-45889753 4 4.96e-05 GCC CTCCTCCC TAGACACTGC chr10:126068980-12606906 47 4.96e-05 ctcctctgtg ctcctccc aactccccat chrX:2289661-2289741 30 4.96e-05 ATAGTCCACA ctcctccc cttaccatag chr3:195441260-195441340 33 4.96e-05 CCTGCCCTAA CTCCTCCC TGACTGGCCT chr7:139998171-139998251 71 4.96e-05 tcccctggta ctcctccc ct chr1:230530542-230530622 70 4.96e-05 tcctctcatg ctcctccc ccc chr17:64972545-64972625 18 4.96e-05 aacttccacc ctcctccc tccaacttcc chr9:124991304-124991384 16 4.96e-05 cctccttgtc ctcctccc cctccAGCTG chr3:195440159-195440239 60 4.96e-05 cctgccctaa ctcctccc tgacctgtcc chr2:239886858-239886938 41 4.96e-05 tccctcctgc ctcctccc tccttcctct chr2:121272788-121272868 22 4.96e-05 tccactctcc ctcctccc tgactctccc chr9:140428837-140428917 5 4.96e-05 CAGG CTCCTCCC CAACAGTGTC chr1:228094349-228094429 6 4.96e-05 tcctg ctcctccc tctcccttcc chr3:195439946-195440026 70 4.96e-05 tgccctaagt ctcctccc tga chr3:195440573-195440653 31 4.96e-05 tgccctaagt ctcctccc tgaccggtcc chr19:14346477-14346557 34 9.86e-05 Ttcctcctct gtcctccc cgctcctctg chr17:79775488-79775568 27 9.86e-05 TCAGCCCCGG GTCCTCCC CCTGCACTCA chr2:242424814-242424894 45 9.86e-05 ccttcctaga gtcctccc tccctccctg chr12:131530518-13153059 44 9.86e-05 CCTGGTGAGT GTCCTCCC TGGTCAGTGT chr11:1947965-1948045 13 9.86e-05 CAGAGTCTCC GTCCTCCC TTCTGTCCTC chr17:79008034-79008114 68 9.86e-05 CTCTCCCAGG GTCCTCCC CTCTC chr1:802352-802432 66 9.86e-05 CATCCCTGAC GTCCTCCC GTGCCCT chr19:46916040-46916120 7 9.86e-05 gtcgac gtcctccc cgatctgcag chr8:41721990-41722070 7 9.86e-05 TGCTGA GTCCTCCC CACTCTCCCT chr9:137099732-137099812 59 9.86e-05 ctccccacct gtcctccc cactGGTCCT chr17:79703058-79703138 32 1.18e-04 CCCGAGTCAG CTGCTCCT GCGGGTGCTC chr17:44967467-44967547 64 1.18e-04 CAGTCCCCCG CTGCTCCT GCAGTCTTG chr12:111695503-11169558 17 1.31e-04 attctccatc ttcctcct cttcctcttc chr7:454509-454589 58 1.31e-04 cttcctcctc ttcctcct ACCCCACTGT chr22:46421225-46421305 23 1.60e-04 ctgcgtgctc ctgctccc tgagtgcacc chr7:127866419-127866499 65 1.80e-04 ccattcattc ttcctccc atccatct chr19:48216933-48217013 52 1.80e-04 cctcccactc ttcctccc actcttcctc chr16:88525890-88525970 52 1.80e-04 acccttctcc ttcctccc cttcctcctc chr17:3438686-3438766 35 1.80e-04 tccccctccc ttcctccc tctccctcct chr9:96058080-96058160 70 1.80e-04 tcccctcacc ttcctccc ctc chr5:944646-944726 46 1.93e-04 GCTCCCCATA CTCCTCTT GTTCCCCATG chr5:139056172-139056252 2 1.93e-04 c ctcctctt CTCAGGCCTT chr12:131574126-13157420 4 2.31e-04 GTA GTGCTCCT GGCCAGTGAG chr18:3452670-3452750 5 2.31e-04 CCCC GTGCTCCT CCGCCGTCCT chr8:144021218-144021298 26 2.31e-04 CCACCCACCT GTGCTCCT CCACCCCACA chr20:60933619-60933699 71 2.31e-04 TCCTCCTGCG GTGCTCCT CC chr8:50064147-50064227 17 2.31e-04 tgctcccctg gtgctcct gtggtgctcc chr20:61997499-61997579 43 2.61e-04 ccctctcctg gtgctccc tgccctctcc chr2:242144700-242144780 69 2.61e-04 GTGGTCAGGA GTGCTCCC AGGC chr18:77492139-77492219 67 2.61e-04 GTCATCAGGA GTGCTCCC AAAATC chr22:39437214-39437294 40 2.61e-04 GGCAGGGCTG GTGCTCCC GGCCCTGGGA chr3:197252705-197252785 53 2.61e-04 GCAGGTCTGT GTGCTCCC TCTGCTGGTC chr5:945078-945158 57 2.61e-04 CATGCTCTTC GTGCTCCC CATGCTCTCT chr9:131001775-131001855 24 2.61e-04 TGCCAAGTGA GTGCTCCC CCAGGCAAAA chr22:39473608-39473688 42 2.61e-04 GGCTGGGGTG GTGCTCCC GGCCCTGGGA chr12:131531463-13153154 13 2.61e-04 TCCCTGGTGA GTGCTCCC TCCCTGGTCA chr22:39417775-39417855 30 2.61e-04 GGCCAGGCCG GTGCTCCC TGCCCTGAGA chr1:801892-801972 8 3.25e-04 TCACGTG GTCCTCTC TCTGCACTCG chr19:1282767-1282847 20 3.37e-04 GGCTGTGTGC CTGCTCTT TTCCACCACT chr17:39098892-39098972 26 3.45e-04 ctccttcttc ttcctctt cttcttcctc chr19:8018082-8018162 9 3.77e-04 GCTGCAAT TTCCTCTC CTTACCCATG chr2:106412262-106412342 41 3.77e-04 CCTTCGCCGC TTCCTCTC ATCTTCCACG chr11:742738-742818 31 4.09e-04 ATAGTGGGTA GTGCTCTC CTTTGTGGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCTCCY MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:44106790-44106870 2e-05 29_[+4]_43 chr7:157568920-157569000 2e-05 24_[+4]_48 chr8:21040739-21040819 2e-05 19_[+4]_53 chr2:70129410-70129490 2e-05 30_[+4]_42 chr1:228105865-228105945 2e-05 16_[+4]_56 chr19:18848517-18848597 2e-05 38_[+4]_34 chr4:185395188-185395268 2e-05 47_[+4]_25 chr7:132246654-132246734 2e-05 21_[+4]_51 chr19:49697242-49697322 2e-05 36_[+4]_36 chr19:3908568-3908648 2e-05 56_[+4]_16 chr7:76049450-76049530 2e-05 37_[+4]_35 chr15:91190262-91190342 2e-05 65_[+4]_7 chr12:132645906-13264598 2e-05 16_[+4]_56 chr1:197737318-197737398 2e-05 68_[+4]_4 chr19:48494736-48494816 2e-05 18_[+4]_54 chr19:19644322-19644402 2e-05 35_[+4]_37 chr22:45088215-45088295 2e-05 32_[+4]_40 chr7:158178796-158178876 2e-05 60_[+4]_12 chr5:176523863-176523943 2e-05 57_[+4]_15 chr19:6832529-6832609 2e-05 32_[+4]_40 chr6:21965519-21965599 2e-05 64_[+4]_8 chr3:13873784-13873864 2e-05 7_[+4]_65 chr19:39014114-39014194 2e-05 5_[+4]_67 chr11:111783949-11178402 2e-05 60_[+4]_12 chr16:1426252-1426332 2e-05 32_[+4]_40 chr12:49930461-49930541 2e-05 4_[+4]_68 chr20:55285838-55285918 2e-05 69_[+4]_3 chr20:3765785-3765865 2e-05 64_[+4]_8 chr10:133579222-13357930 2e-05 61_[+4]_11 chr11:93126080-93126160 2e-05 56_[+4]_16 chr17:6463968-6464048 2e-05 19_[+4]_53 chr9:96058956-96059036 2e-05 66_[+4]_6 chr17:74664255-74664335 2e-05 48_[+4]_24 chr15:35311782-35311862 2e-05 11_[+4]_61 chr19:19350620-19350700 2e-05 72_[+4] chr2:171684783-171684863 5e-05 22_[+4]_50 chr16:89060004-89060084 5e-05 50_[+4]_22 chr1:228032757-228032837 5e-05 68_[+4]_4 chr19:44284447-44284527 5e-05 23_[+4]_49 chr12:108991850-10899193 5e-05 33_[+4]_39 chr1:26201675-26201755 5e-05 26_[+4]_46 chr6:166303545-166303625 5e-05 30_[+4]_42 chr1:11473865-11473945 5e-05 48_[+4]_24 chr19:1394455-1394535 5e-05 33_[+4]_39 chr1:236917083-236917163 5e-05 40_[+4]_32 chr1:2367584-2367664 5e-05 13_[+4]_59 chr2:171685241-171685321 5e-05 3_[+4]_69 chr21:44830191-44830271 5e-05 7_[+4]_65 chr17:45889673-45889753 5e-05 3_[+4]_69 chr10:126068980-12606906 5e-05 46_[+4]_26 chrX:2289661-2289741 5e-05 29_[+4]_43 chr3:195441260-195441340 5e-05 32_[+4]_40 chr7:139998171-139998251 5e-05 70_[+4]_2 chr1:230530542-230530622 5e-05 69_[+4]_3 chr17:64972545-64972625 5e-05 17_[+4]_55 chr9:124991304-124991384 5e-05 15_[+4]_57 chr3:195440159-195440239 5e-05 59_[+4]_13 chr2:239886858-239886938 5e-05 40_[+4]_32 chr2:121272788-121272868 5e-05 21_[+4]_51 chr9:140428837-140428917 5e-05 4_[+4]_68 chr1:228094349-228094429 5e-05 5_[+4]_67 chr3:195439946-195440026 5e-05 69_[+4]_3 chr3:195440573-195440653 5e-05 30_[+4]_42 chr19:14346477-14346557 9.9e-05 33_[+4]_39 chr17:79775488-79775568 9.9e-05 26_[+4]_46 chr2:242424814-242424894 9.9e-05 44_[+4]_28 chr12:131530518-13153059 9.9e-05 43_[+4]_29 chr11:1947965-1948045 9.9e-05 12_[+4]_60 chr17:79008034-79008114 9.9e-05 67_[+4]_5 chr1:802352-802432 9.9e-05 65_[+4]_7 chr19:46916040-46916120 9.9e-05 6_[+4]_66 chr8:41721990-41722070 9.9e-05 6_[+4]_66 chr9:137099732-137099812 9.9e-05 58_[+4]_14 chr17:79703058-79703138 0.00012 31_[+4]_41 chr17:44967467-44967547 0.00012 63_[+4]_9 chr12:111695503-11169558 0.00013 16_[+4]_56 chr7:454509-454589 0.00013 57_[+4]_15 chr22:46421225-46421305 0.00016 22_[+4]_50 chr7:127866419-127866499 0.00018 64_[+4]_8 chr19:48216933-48217013 0.00018 51_[+4]_21 chr16:88525890-88525970 0.00018 51_[+4]_21 chr17:3438686-3438766 0.00018 34_[+4]_38 chr9:96058080-96058160 0.00018 69_[+4]_3 chr5:944646-944726 0.00019 45_[+4]_27 chr5:139056172-139056252 0.00019 1_[+4]_71 chr12:131574126-13157420 0.00023 3_[+4]_69 chr18:3452670-3452750 0.00023 4_[+4]_68 chr8:144021218-144021298 0.00023 25_[+4]_47 chr20:60933619-60933699 0.00023 70_[+4]_2 chr8:50064147-50064227 0.00023 16_[+4]_56 chr20:61997499-61997579 0.00026 42_[+4]_30 chr2:242144700-242144780 0.00026 68_[+4]_4 chr18:77492139-77492219 0.00026 66_[+4]_6 chr22:39437214-39437294 0.00026 39_[+4]_33 chr3:197252705-197252785 0.00026 52_[+4]_20 chr5:945078-945158 0.00026 56_[+4]_16 chr9:131001775-131001855 0.00026 23_[+4]_49 chr22:39473608-39473688 0.00026 41_[+4]_31 chr12:131531463-13153154 0.00026 12_[+4]_60 chr22:39417775-39417855 0.00026 29_[+4]_43 chr1:801892-801972 0.00032 7_[+4]_65 chr19:1282767-1282847 0.00034 19_[+4]_53 chr17:39098892-39098972 0.00035 25_[+4]_47 chr19:8018082-8018162 0.00038 8_[+4]_64 chr2:106412262-106412342 0.00038 40_[+4]_32 chr11:742738-742818 0.00041 30_[+4]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCTCCY MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTCCTCCY width=8 seqs=106 chr6:44106790-44106870 ( 30) CTCCTCCT 1 chr7:157568920-157569000 ( 25) CTCCTCCT 1 chr8:21040739-21040819 ( 20) CTCCTCCT 1 chr2:70129410-70129490 ( 31) CTCCTCCT 1 chr1:228105865-228105945 ( 17) CTCCTCCT 1 chr19:18848517-18848597 ( 39) CTCCTCCT 1 chr4:185395188-185395268 ( 48) CTCCTCCT 1 chr7:132246654-132246734 ( 22) CTCCTCCT 1 chr19:49697242-49697322 ( 37) CTCCTCCT 1 chr19:3908568-3908648 ( 57) CTCCTCCT 1 chr7:76049450-76049530 ( 38) CTCCTCCT 1 chr15:91190262-91190342 ( 66) CTCCTCCT 1 chr12:132645906-13264598 ( 17) CTCCTCCT 1 chr1:197737318-197737398 ( 69) CTCCTCCT 1 chr19:48494736-48494816 ( 19) CTCCTCCT 1 chr19:19644322-19644402 ( 36) CTCCTCCT 1 chr22:45088215-45088295 ( 33) CTCCTCCT 1 chr7:158178796-158178876 ( 61) CTCCTCCT 1 chr5:176523863-176523943 ( 58) CTCCTCCT 1 chr19:6832529-6832609 ( 33) CTCCTCCT 1 chr6:21965519-21965599 ( 65) CTCCTCCT 1 chr3:13873784-13873864 ( 8) CTCCTCCT 1 chr19:39014114-39014194 ( 6) CTCCTCCT 1 chr11:111783949-11178402 ( 61) CTCCTCCT 1 chr16:1426252-1426332 ( 33) CTCCTCCT 1 chr12:49930461-49930541 ( 5) CTCCTCCT 1 chr20:55285838-55285918 ( 70) CTCCTCCT 1 chr20:3765785-3765865 ( 65) CTCCTCCT 1 chr10:133579222-13357930 ( 62) CTCCTCCT 1 chr11:93126080-93126160 ( 57) CTCCTCCT 1 chr17:6463968-6464048 ( 20) CTCCTCCT 1 chr9:96058956-96059036 ( 67) CTCCTCCT 1 chr17:74664255-74664335 ( 49) CTCCTCCT 1 chr15:35311782-35311862 ( 12) CTCCTCCT 1 chr19:19350620-19350700 ( 73) CTCCTCCT 1 chr2:171684783-171684863 ( 23) CTCCTCCC 1 chr16:89060004-89060084 ( 51) CTCCTCCC 1 chr1:228032757-228032837 ( 69) CTCCTCCC 1 chr19:44284447-44284527 ( 24) CTCCTCCC 1 chr12:108991850-10899193 ( 34) CTCCTCCC 1 chr1:26201675-26201755 ( 27) CTCCTCCC 1 chr6:166303545-166303625 ( 31) CTCCTCCC 1 chr1:11473865-11473945 ( 49) CTCCTCCC 1 chr19:1394455-1394535 ( 34) CTCCTCCC 1 chr1:236917083-236917163 ( 41) CTCCTCCC 1 chr1:2367584-2367664 ( 14) CTCCTCCC 1 chr2:171685241-171685321 ( 4) CTCCTCCC 1 chr21:44830191-44830271 ( 8) CTCCTCCC 1 chr17:45889673-45889753 ( 4) CTCCTCCC 1 chr10:126068980-12606906 ( 47) CTCCTCCC 1 chrX:2289661-2289741 ( 30) CTCCTCCC 1 chr3:195441260-195441340 ( 33) CTCCTCCC 1 chr7:139998171-139998251 ( 71) CTCCTCCC 1 chr1:230530542-230530622 ( 70) CTCCTCCC 1 chr17:64972545-64972625 ( 18) CTCCTCCC 1 chr9:124991304-124991384 ( 16) CTCCTCCC 1 chr3:195440159-195440239 ( 60) CTCCTCCC 1 chr2:239886858-239886938 ( 41) CTCCTCCC 1 chr2:121272788-121272868 ( 22) CTCCTCCC 1 chr9:140428837-140428917 ( 5) CTCCTCCC 1 chr1:228094349-228094429 ( 6) CTCCTCCC 1 chr3:195439946-195440026 ( 70) CTCCTCCC 1 chr3:195440573-195440653 ( 31) CTCCTCCC 1 chr19:14346477-14346557 ( 34) GTCCTCCC 1 chr17:79775488-79775568 ( 27) GTCCTCCC 1 chr2:242424814-242424894 ( 45) GTCCTCCC 1 chr12:131530518-13153059 ( 44) GTCCTCCC 1 chr11:1947965-1948045 ( 13) GTCCTCCC 1 chr17:79008034-79008114 ( 68) GTCCTCCC 1 chr1:802352-802432 ( 66) GTCCTCCC 1 chr19:46916040-46916120 ( 7) GTCCTCCC 1 chr8:41721990-41722070 ( 7) GTCCTCCC 1 chr9:137099732-137099812 ( 59) GTCCTCCC 1 chr17:79703058-79703138 ( 32) CTGCTCCT 1 chr17:44967467-44967547 ( 64) CTGCTCCT 1 chr12:111695503-11169558 ( 17) TTCCTCCT 1 chr7:454509-454589 ( 58) TTCCTCCT 1 chr22:46421225-46421305 ( 23) CTGCTCCC 1 chr7:127866419-127866499 ( 65) TTCCTCCC 1 chr19:48216933-48217013 ( 52) TTCCTCCC 1 chr16:88525890-88525970 ( 52) TTCCTCCC 1 chr17:3438686-3438766 ( 35) TTCCTCCC 1 chr9:96058080-96058160 ( 70) TTCCTCCC 1 chr5:944646-944726 ( 46) CTCCTCTT 1 chr5:139056172-139056252 ( 2) CTCCTCTT 1 chr12:131574126-13157420 ( 4) GTGCTCCT 1 chr18:3452670-3452750 ( 5) GTGCTCCT 1 chr8:144021218-144021298 ( 26) GTGCTCCT 1 chr20:60933619-60933699 ( 71) GTGCTCCT 1 chr8:50064147-50064227 ( 17) GTGCTCCT 1 chr20:61997499-61997579 ( 43) GTGCTCCC 1 chr2:242144700-242144780 ( 69) GTGCTCCC 1 chr18:77492139-77492219 ( 67) GTGCTCCC 1 chr22:39437214-39437294 ( 40) GTGCTCCC 1 chr3:197252705-197252785 ( 53) GTGCTCCC 1 chr5:945078-945158 ( 57) GTGCTCCC 1 chr9:131001775-131001855 ( 24) GTGCTCCC 1 chr22:39473608-39473688 ( 42) GTGCTCCC 1 chr12:131531463-13153154 ( 13) GTGCTCCC 1 chr22:39417775-39417855 ( 30) GTGCTCCC 1 chr1:801892-801972 ( 8) GTCCTCTC 1 chr19:1282767-1282847 ( 20) CTGCTCTT 1 chr17:39098892-39098972 ( 26) TTCCTCTT 1 chr19:8018082-8018162 ( 9) TTCCTCTC 1 chr2:106412262-106412342 ( 41) TTCCTCTC 1 chr11:742738-742818 ( 31) GTGCTCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCTCCY MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.36683 E= 1.1e-094 -1337 110 -24 -106 -1337 -1337 -1337 234 -1337 142 -67 -1337 -1337 172 -1337 -1337 -1337 -1337 -1337 234 -1337 172 -1337 -1337 -1337 161 -1337 -139 -1337 85 -1337 120 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCTCCY MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 106 E= 1.1e-094 0.000000 0.650943 0.254717 0.094340 0.000000 0.000000 0.000000 1.000000 0.000000 0.811321 0.188679 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.924528 0.000000 0.075472 0.000000 0.547170 0.000000 0.452830 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCTCCY MEME-4 regular expression -------------------------------------------------------------------------------- [CG]TCCTCC[CT] -------------------------------------------------------------------------------- Time 15.40 secs. ******************************************************************************** ******************************************************************************** MOTIF RGGAGGAG MEME-5 width = 8 sites = 72 llr = 629 E-value = 4.2e-056 ******************************************************************************** -------------------------------------------------------------------------------- Motif RGGAGGAG MEME-5 Description -------------------------------------------------------------------------------- Simplified A 712a2:a: pos.-specific C :::::::: probability G 398:8a:9 matrix T :::::::1 bits 2.3 * * 2.1 * * 1.9 * * 1.6 * ** Relative 1.4 * *** Entropy 1.2 ******** (12.6 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AGGAGGAG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGAGGAG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:168635758-168635838 1 1.94e-05 . AGGAGGAG CACATATGAT chr6:10415308-10415388 42 1.94e-05 gaggaggtgg aggaggag aaggaggagg chr10:121302193-12130227 46 1.94e-05 gagggcgagg aggaggag gaggagggca chr9:116327642-116327722 65 1.94e-05 gaggaggaag aggaggag gGACGGGT chr7:2952598-2952678 29 1.94e-05 ggtgatgggg aggaggag gagggaagaa chr8:41665453-41665533 25 1.94e-05 ggaggggaag aggaggag gggaggagga chr16:85346315-85346395 34 1.94e-05 gaggcggacg aggaggag aaggaggggg chr12:131917115-13191719 70 1.94e-05 gaggaagagg aggaggag gga chr7:101044874-101044954 50 1.94e-05 gaagagggag aggaggag gtggaggagg chr12:48297873-48297953 29 1.94e-05 gaggaggagg aggaggag aaggaggagg chr16:11609550-11609630 39 1.94e-05 aggaaaaggg aggaggag gaggaaaagg chr12:108735839-10873591 4 1.94e-05 acg aggaggag ggagtaagga chr6:157034842-157034922 39 1.94e-05 gaggaggcag aggaggag gcaaaggagg chr9:140398006-140398086 70 1.94e-05 aggagggaga aggaggag gga chr17:16359495-16359575 24 1.94e-05 gaggaggaag aggaggag gaagaggagg chr11:114122437-11412251 39 1.94e-05 gaggaggagg aggaggag cagaaggagg chr3:197866540-197866620 68 1.94e-05 atcggggaga aggaggag aataa chr12:122241806-12224188 70 1.94e-05 gaggaggaag aggaggag gGT chrX:47240440-47240520 27 1.94e-05 gagcaggagg aggaggag caggaggagg chr16:5472863-5472943 49 1.94e-05 gggaggaaag aggaggag ggagaaggag chr16:29606356-29606436 71 1.94e-05 gaggaggagg aggaggag ga chr4:6662205-6662285 36 1.94e-05 gtggaggagg aggaggag aaagaagaaa chr9:141093956-141094036 51 1.94e-05 atcggggaga aggaggag aatgaggagg chr19:50996037-50996117 2 1.94e-05 g aggaggag gaaagaggag chr8:144097161-144097241 65 1.94e-05 GTGCCGTGTG AGGAGGAG GAGGGAGT chr9:136355980-136356060 5 1.94e-05 gaga aggaggag ttggaggagg chr17:46116865-46116945 26 4.86e-05 gaggaggagg gggaggag ggtgatcatg chr6:168634720-168634800 72 4.86e-05 TGATAACTAC GGGAGGAG G chr19:4786502-4786582 49 4.86e-05 ggaggttgga gggaggag gttggaggga chr19:55656693-55656773 57 4.86e-05 agggagagga gggaggag ggaaaggggg chr19:8279763-8279843 31 4.86e-05 gaggtgggag gggaggag gaagaggaaa chr19:517932-518012 62 4.86e-05 GATCCAGGTT GGGAGGAG GCCGAGGCTG chr12:654804-654884 5 4.86e-05 GATg gggaggag tgaggagtgg chr11:3252795-3252875 2 4.86e-05 g gggaggag gcgggggagg chr19:3647004-3647084 26 4.86e-05 gaggagggat gggaggag gggtgcaggt chr16:87734203-87734283 55 4.86e-05 ggagggcaga gggaggag ggcagagggc chr19:13319051-13319131 47 4.86e-05 agacagggag gggaggag TCGAAAACCA chr14:94454636-94454716 55 4.86e-05 aggagcagat gggaggag ggagaggagg chr8:143274232-143274312 12 4.86e-05 agcagggacg gggaggag cagggagggg chr10:133183839-13318391 56 4.86e-05 gatgagcgga gggaggag cagagagagg chr8:144871417-144871497 48 4.86e-05 gagccgggtg gggaggag ggggagccga chr22:29516265-29516345 60 4.86e-05 gatggaaaca gggaggag ggagaggtga chr16:85750024-85750104 30 7.45e-05 gaggaaggga aggaagag aggagggaga chr8:143342586-143342666 15 7.45e-05 gaagagggag agaaggag agagggagga chr19:1745802-1745882 73 7.45e-05 agaaggaaga aggaagag chr11:1894826-1894906 29 7.45e-05 ggagggaagg agaaggag aagaatggaa chr3:42700739-42700819 22 7.45e-05 gaggaggagg aggaagag ggtggcagtc chr19:52232751-52232831 57 7.45e-05 agggaaagag agaaggag ggggaggaag chr2:122368055-122368135 2 7.45e-05 a aggaagag gagctggagg chr7:485927-486007 22 7.45e-05 aaggaaagga agaaggag ggaggaggga chr9:116449524-116449604 64 7.45e-05 gggaggagga aggaagag agtagagag chr5:1471736-1471816 61 7.45e-05 AGGAGGTTCC AGGAAGAG AGCAGCAGGA chr19:45222233-45222313 32 7.45e-05 AAAAGggaga agaaggag gtggaggagg chr1:5807731-5807811 47 7.45e-05 gagaggagga agaaggag atggaggagg chr7:5322212-5322292 13 7.45e-05 tgggaggtgg aggaagag ggaggggaag chr19:1746373-1746453 37 1.39e-04 aggacgaggt aggaggaT CCTCACcctt chr15:52411423-52411503 42 1.39e-04 agaggagata ggaaggag agaggaggcg chr18:10756008-10756088 42 1.39e-04 atgcaggatg aagaggag ggatggggat chr19:17890371-17890451 11 1.39e-04 aggaggatgg ggaaggag cggagtcaag chr19:1282064-1282144 45 1.39e-04 ggacagagtg ggaaggag aaggatgtga chr7:44346776-44346856 72 1.39e-04 tgtgagcaga gggaagag g chrX:133930539-133930619 68 1.39e-04 CAGAGAGGAT AAGAGGAG GGCAG chr6:32156639-32156719 73 1.52e-04 TGGGGGTGGA ATGAGGAG chr17:80268212-80268292 52 1.52e-04 CATGGAGGAG ATGAGGAG GGGAGGAGGA chr17:39795949-39796029 63 1.52e-04 ggggaagggc atgaggag agggaggact chr22:36970047-36970127 57 1.99e-04 agcacctaag gagaggag gcaggcgggt chr20:62151273-62151353 31 1.99e-04 GGGAGGTGTG GGGAGGAT TCTGCGCTGG chr7:98029764-98029844 72 2.66e-04 cagcggggcg ggaaagag a chr7:38393927-38394007 56 2.66e-04 CCTCCCTCCC AGAAGGAT TGGTGCCTGG chr3:193534734-193534814 26 2.66e-04 CTCACTCTCC AGGAAGAT GGGAATAAAG chr22:42680081-42680161 57 2.85e-04 GATGGATGGA TGGAGGAG GGAGGGGAGC chr14:75721713-75721793 55 3.62e-04 GGGGAGGAGG GAGAAGAG GAAGGAGGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGAGGAG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:168635758-168635838 1.9e-05 [+5]_72 chr6:10415308-10415388 1.9e-05 41_[+5]_31 chr10:121302193-12130227 1.9e-05 45_[+5]_27 chr9:116327642-116327722 1.9e-05 64_[+5]_8 chr7:2952598-2952678 1.9e-05 28_[+5]_44 chr8:41665453-41665533 1.9e-05 24_[+5]_48 chr16:85346315-85346395 1.9e-05 33_[+5]_39 chr12:131917115-13191719 1.9e-05 69_[+5]_3 chr7:101044874-101044954 1.9e-05 49_[+5]_23 chr12:48297873-48297953 1.9e-05 28_[+5]_44 chr16:11609550-11609630 1.9e-05 38_[+5]_34 chr12:108735839-10873591 1.9e-05 3_[+5]_69 chr6:157034842-157034922 1.9e-05 38_[+5]_34 chr9:140398006-140398086 1.9e-05 69_[+5]_3 chr17:16359495-16359575 1.9e-05 23_[+5]_49 chr11:114122437-11412251 1.9e-05 38_[+5]_34 chr3:197866540-197866620 1.9e-05 67_[+5]_5 chr12:122241806-12224188 1.9e-05 69_[+5]_3 chrX:47240440-47240520 1.9e-05 26_[+5]_46 chr16:5472863-5472943 1.9e-05 48_[+5]_24 chr16:29606356-29606436 1.9e-05 70_[+5]_2 chr4:6662205-6662285 1.9e-05 35_[+5]_37 chr9:141093956-141094036 1.9e-05 50_[+5]_22 chr19:50996037-50996117 1.9e-05 1_[+5]_71 chr8:144097161-144097241 1.9e-05 64_[+5]_8 chr9:136355980-136356060 1.9e-05 4_[+5]_68 chr17:46116865-46116945 4.9e-05 25_[+5]_47 chr6:168634720-168634800 4.9e-05 71_[+5]_1 chr19:4786502-4786582 4.9e-05 48_[+5]_24 chr19:55656693-55656773 4.9e-05 56_[+5]_16 chr19:8279763-8279843 4.9e-05 30_[+5]_42 chr19:517932-518012 4.9e-05 61_[+5]_11 chr12:654804-654884 4.9e-05 4_[+5]_68 chr11:3252795-3252875 4.9e-05 1_[+5]_71 chr19:3647004-3647084 4.9e-05 25_[+5]_47 chr16:87734203-87734283 4.9e-05 54_[+5]_18 chr19:13319051-13319131 4.9e-05 46_[+5]_26 chr14:94454636-94454716 4.9e-05 54_[+5]_18 chr8:143274232-143274312 4.9e-05 11_[+5]_61 chr10:133183839-13318391 4.9e-05 55_[+5]_17 chr8:144871417-144871497 4.9e-05 47_[+5]_25 chr22:29516265-29516345 4.9e-05 59_[+5]_13 chr16:85750024-85750104 7.5e-05 29_[+5]_43 chr8:143342586-143342666 7.5e-05 14_[+5]_58 chr19:1745802-1745882 7.5e-05 72_[+5] chr11:1894826-1894906 7.5e-05 28_[+5]_44 chr3:42700739-42700819 7.5e-05 21_[+5]_51 chr19:52232751-52232831 7.5e-05 56_[+5]_16 chr2:122368055-122368135 7.5e-05 1_[+5]_71 chr7:485927-486007 7.5e-05 21_[+5]_51 chr9:116449524-116449604 7.5e-05 63_[+5]_9 chr5:1471736-1471816 7.5e-05 60_[+5]_12 chr19:45222233-45222313 7.5e-05 31_[+5]_41 chr1:5807731-5807811 7.5e-05 46_[+5]_26 chr7:5322212-5322292 7.5e-05 12_[+5]_60 chr19:1746373-1746453 0.00014 36_[+5]_36 chr15:52411423-52411503 0.00014 41_[+5]_31 chr18:10756008-10756088 0.00014 41_[+5]_31 chr19:17890371-17890451 0.00014 10_[+5]_62 chr19:1282064-1282144 0.00014 44_[+5]_28 chr7:44346776-44346856 0.00014 71_[+5]_1 chrX:133930539-133930619 0.00014 67_[+5]_5 chr6:32156639-32156719 0.00015 72_[+5] chr17:80268212-80268292 0.00015 51_[+5]_21 chr17:39795949-39796029 0.00015 62_[+5]_10 chr22:36970047-36970127 0.0002 56_[+5]_16 chr20:62151273-62151353 0.0002 30_[+5]_42 chr7:98029764-98029844 0.00027 71_[+5]_1 chr7:38393927-38394007 0.00027 55_[+5]_17 chr3:193534734-193534814 0.00027 25_[+5]_47 chr22:42680081-42680161 0.00028 56_[+5]_16 chr14:75721713-75721793 0.00036 54_[+5]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGAGGAG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RGGAGGAG width=8 seqs=72 chr6:168635758-168635838 ( 1) AGGAGGAG 1 chr6:10415308-10415388 ( 42) AGGAGGAG 1 chr10:121302193-12130227 ( 46) AGGAGGAG 1 chr9:116327642-116327722 ( 65) AGGAGGAG 1 chr7:2952598-2952678 ( 29) AGGAGGAG 1 chr8:41665453-41665533 ( 25) AGGAGGAG 1 chr16:85346315-85346395 ( 34) AGGAGGAG 1 chr12:131917115-13191719 ( 70) AGGAGGAG 1 chr7:101044874-101044954 ( 50) AGGAGGAG 1 chr12:48297873-48297953 ( 29) AGGAGGAG 1 chr16:11609550-11609630 ( 39) AGGAGGAG 1 chr12:108735839-10873591 ( 4) AGGAGGAG 1 chr6:157034842-157034922 ( 39) AGGAGGAG 1 chr9:140398006-140398086 ( 70) AGGAGGAG 1 chr17:16359495-16359575 ( 24) AGGAGGAG 1 chr11:114122437-11412251 ( 39) AGGAGGAG 1 chr3:197866540-197866620 ( 68) AGGAGGAG 1 chr12:122241806-12224188 ( 70) AGGAGGAG 1 chrX:47240440-47240520 ( 27) AGGAGGAG 1 chr16:5472863-5472943 ( 49) AGGAGGAG 1 chr16:29606356-29606436 ( 71) AGGAGGAG 1 chr4:6662205-6662285 ( 36) AGGAGGAG 1 chr9:141093956-141094036 ( 51) AGGAGGAG 1 chr19:50996037-50996117 ( 2) AGGAGGAG 1 chr8:144097161-144097241 ( 65) AGGAGGAG 1 chr9:136355980-136356060 ( 5) AGGAGGAG 1 chr17:46116865-46116945 ( 26) GGGAGGAG 1 chr6:168634720-168634800 ( 72) GGGAGGAG 1 chr19:4786502-4786582 ( 49) GGGAGGAG 1 chr19:55656693-55656773 ( 57) GGGAGGAG 1 chr19:8279763-8279843 ( 31) GGGAGGAG 1 chr19:517932-518012 ( 62) GGGAGGAG 1 chr12:654804-654884 ( 5) GGGAGGAG 1 chr11:3252795-3252875 ( 2) GGGAGGAG 1 chr19:3647004-3647084 ( 26) GGGAGGAG 1 chr16:87734203-87734283 ( 55) GGGAGGAG 1 chr19:13319051-13319131 ( 47) GGGAGGAG 1 chr14:94454636-94454716 ( 55) GGGAGGAG 1 chr8:143274232-143274312 ( 12) GGGAGGAG 1 chr10:133183839-13318391 ( 56) GGGAGGAG 1 chr8:144871417-144871497 ( 48) GGGAGGAG 1 chr22:29516265-29516345 ( 60) GGGAGGAG 1 chr16:85750024-85750104 ( 30) AGGAAGAG 1 chr8:143342586-143342666 ( 15) AGAAGGAG 1 chr19:1745802-1745882 ( 73) AGGAAGAG 1 chr11:1894826-1894906 ( 29) AGAAGGAG 1 chr3:42700739-42700819 ( 22) AGGAAGAG 1 chr19:52232751-52232831 ( 57) AGAAGGAG 1 chr2:122368055-122368135 ( 2) AGGAAGAG 1 chr7:485927-486007 ( 22) AGAAGGAG 1 chr9:116449524-116449604 ( 64) AGGAAGAG 1 chr5:1471736-1471816 ( 61) AGGAAGAG 1 chr19:45222233-45222313 ( 32) AGAAGGAG 1 chr1:5807731-5807811 ( 47) AGAAGGAG 1 chr7:5322212-5322292 ( 13) AGGAAGAG 1 chr19:1746373-1746453 ( 37) AGGAGGAT 1 chr15:52411423-52411503 ( 42) GGAAGGAG 1 chr18:10756008-10756088 ( 42) AAGAGGAG 1 chr19:17890371-17890451 ( 11) GGAAGGAG 1 chr19:1282064-1282144 ( 45) GGAAGGAG 1 chr7:44346776-44346856 ( 72) GGGAAGAG 1 chrX:133930539-133930619 ( 68) AAGAGGAG 1 chr6:32156639-32156719 ( 73) ATGAGGAG 1 chr17:80268212-80268292 ( 52) ATGAGGAG 1 chr17:39795949-39796029 ( 63) ATGAGGAG 1 chr22:36970047-36970127 ( 57) GAGAGGAG 1 chr20:62151273-62151353 ( 31) GGGAGGAT 1 chr7:98029764-98029844 ( 72) GGAAAGAG 1 chr7:38393927-38394007 ( 56) AGAAGGAT 1 chr3:193534734-193534814 ( 26) AGGAAGAT 1 chr22:42680081-42680161 ( 57) TGGAGGAG 1 chr14:75721713-75721793 ( 55) GAGAAGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGAGGAG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.77545 E= 4.2e-056 171 -1281 15 -383 -185 -1281 159 -224 -39 -1281 150 -1281 232 -1281 -1281 -1281 -39 -1281 150 -1281 -1281 -1281 174 -1281 232 -1281 -1281 -1281 -1281 -1281 165 -183 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGAGGAG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 72 E= 4.2e-056 0.652778 0.000000 0.333333 0.013889 0.055556 0.000000 0.902778 0.041667 0.152778 0.000000 0.847222 0.000000 1.000000 0.000000 0.000000 0.000000 0.152778 0.000000 0.847222 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.944444 0.055556 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGGAGGAG MEME-5 regular expression -------------------------------------------------------------------------------- [AG]GGAGGAG -------------------------------------------------------------------------------- Time 18.50 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:195440573-195440653 9.50e-03 [+1(3.22e-05)]_5_[+4(6.89e-05)]_10_\ [+1(3.22e-05)]_5_[+4(6.89e-05)]_8_[+1(3.22e-05)]_12 chr9:136355980-136356060 2.20e-05 3_[+3(1.30e-05)]_3_[+2(2.92e-05)]_5_\ [+3(1.30e-05)]_3_[+2(2.92e-05)]_7_[+2(2.92e-05)]_1_[+5(1.94e-05)]_10 chr8:144097161-144097241 5.97e-05 19_[+5(1.94e-05)]_16_[+5(1.94e-05)]_\ 13_[+5(1.94e-05)]_8 chr19:50996037-50996117 2.20e-05 1_[+5(1.94e-05)]_5_[+5(1.94e-05)]_8_\ [+3(1.30e-05)]_2_[+3(3.24e-05)]_18_[+5(1.94e-05)]_6 chr9:137099732-137099812 1.52e-02 4_[+1(3.22e-05)]_22_[+1(8.18e-05)]_\ 4_[+1(8.18e-05)]_5_[+1(8.18e-05)]_5_[+1(3.22e-05)] chr9:141093956-141094036 2.20e-05 9_[+3(1.30e-05)]_12_[+3(1.30e-05)]_\ 12_[+3(1.30e-05)]_4_[+3(5.18e-05)]_2_[+5(7.45e-05)]_1 chr4:6662205-6662285 2.20e-05 7_[+3(1.30e-05)]_14_[+5(1.94e-05)]_\ 22_[+3(1.30e-05)]_4_[+3(1.30e-05)]_1 chr16:29606356-29606436 1.13e-05 30_[+3(5.18e-05)]_5_[+5(1.94e-05)]_\ 6_[+3(1.30e-05)]_2_[+5(1.94e-05)]_5 chr7:506326-506406 9.51e-03 40_[+1(3.22e-05)]_32 chr3:195439946-195440026 9.50e-03 10_[+1(3.22e-05)]_21_[+1(3.22e-05)]_\ 5_[+4(6.89e-05)]_10_[+1(3.22e-05)]_2 chr19:35643514-35643594 3.86e-05 57_[+3(1.30e-05)]_15 chrX:133930539-133930619 9.52e-05 10_[+2(2.92e-05)]_62 chr22:29516265-29516345 9.52e-05 2_[+2(2.92e-05)]_21_[+2(2.92e-05)]_\ 21_[+2(2.92e-05)]_12 chr19:19350620-19350700 2.53e-03 [+4(4.96e-05)]_23_[+1(3.22e-05)]_4_\ [+4(4.96e-05)]_1_[+1(1.27e-05)]_12_[+4(1.95e-05)] chr19:8650887-8650967 4.00e-03 80 chr22:39417775-39417855 1.41e-02 80 chr7:5322212-5322292 9.52e-05 12_[+5(7.45e-05)]_9_[+3(5.18e-05)]_\ 4_[+2(2.92e-05)]_22_[+2(2.92e-05)]_1 chr15:35311782-35311862 1.80e-03 2_[+4(1.95e-05)]_1_[+4(1.95e-05)]_4_\ [+4(1.95e-05)]_1_[+4(1.95e-05)]_40 chr7:44346776-44346856 9.51e-05 31_[+5(1.94e-05)]_13_[+2(2.92e-05)]_\ 12_[+2(9.72e-05)] chr1:228094349-228094429 4.95e-03 6_[+1(3.22e-05)]_13_[+1(3.22e-05)]_\ 25_[+1(1.27e-05)]_12 chr17:39795949-39796029 1.67e-04 1_[+5(7.45e-05)]_32_[+3(1.30e-05)]_\ 21_[+3(3.24e-05)]_2 chr3:195887355-195887435 1.60e-05 24_[+3(9.41e-05)]_21_[+1(1.27e-05)]_\ 19 chr8:144871417-144871497 2.15e-05 10_[+3(3.24e-05)]_7_[+3(1.30e-05)]_\ 15_[+2(2.92e-05)]_24 chr10:133183839-13318391 1.65e-04 18_[+3(3.24e-05)]_4_[+3(3.24e-05)]_\ 16_[+3(3.24e-05)]_18 chr9:140427550-140427630 1.29e-04 23_[+4(4.96e-05)]_49 chr16:49384496-49384576 9.30e-03 21_[+1(3.22e-05)]_51 chr7:454509-454589 6.92e-03 27_[+4(1.95e-05)]_14_[+1(5.17e-05)]_\ 23 chr12:131531463-13153154 1.17e-02 33_[+1(3.22e-05)]_39 chr19:1282064-1282144 2.20e-05 8_[+3(1.30e-05)]_6_[+2(2.92e-05)]_\ 50 chr16:5472863-5472943 2.20e-05 24_[+2(2.92e-05)]_5_[+3(8.10e-05)]_\ 3_[+5(1.94e-05)]_4_[+3(1.30e-05)]_12 chr22:39473608-39473688 1.01e-03 80 chr9:131001775-131001855 1.22e-02 80 chr5:945078-945158 5.26e-02 21_[+1(9.43e-05)]_51 chr9:140428837-140428917 3.16e-04 4_[+4(4.96e-05)]_57_[+4(4.96e-05)]_\ 3 chrX:47240440-47240520 2.20e-05 7_[+3(1.30e-05)]_5_[+5(1.94e-05)]_7_\ [+5(1.94e-05)]_12_[+3(1.30e-05)]_5_[+5(7.45e-05)]_4 chr12:122241806-12224188 6.69e-05 40_[+2(2.92e-05)]_3_[+5(1.94e-05)]_\ 10_[+5(1.94e-05)]_3 chr2:121272788-121272868 9.51e-03 22_[+1(3.22e-05)]_9_[+1(3.22e-05)]_\ 9_[+1(3.22e-05)]_16 chr2:239886858-239886938 4.95e-03 13_[+1(3.22e-05)]_6_[+1(3.22e-05)]_\ 6_[+1(3.22e-05)]_10_[+1(1.27e-05)]_2_[+1(3.22e-05)]_3 chr9:96058080-96058160 2.51e-02 14_[+1(8.18e-05)]_20_[+1(5.17e-05)]_\ 6_[+1(8.18e-05)]_6_[+1(8.18e-05)]_2 chr22:42680081-42680161 1.74e-04 25_[+2(5.86e-05)]_5_[+2(2.92e-05)]_\ 11_[+2(2.92e-05)]_15 chr7:75619610-75619690 3.99e-03 80 chr3:197866540-197866620 2.20e-05 6_[+3(1.30e-05)]_12_[+3(1.30e-05)]_\ 12_[+3(1.30e-05)]_12_[+3(1.30e-05)]_6 chr3:195440159-195440239 9.50e-03 2_[+1(3.22e-05)]_8_[+4(4.96e-05)]_5_\ [+1(3.22e-05)]_5_[+4(6.89e-05)]_8_[+1(3.22e-05)]_12 chr17:74664255-74664335 2.93e-04 19_[+1(3.22e-05)]_21_[+4(1.95e-05)]_\ 24 chr17:75318913-75318993 8.30e-06 33_[+5(1.94e-05)]_4_[+3(8.10e-05)]_\ 27 chr11:114122437-11412251 5.57e-05 29_[+5(1.94e-05)]_1_[+5(1.94e-05)]_\ 1_[+5(7.45e-05)]_1_[+5(4.86e-05)]_4_[+5(1.94e-05)]_4 chr9:96058956-96059036 4.95e-03 5_[+4(4.96e-05)]_21_[+1(3.22e-05)]_\ 5_[+1(8.18e-05)]_8_[+4(1.95e-05)]_9 chr1:5807731-5807811 1.33e-04 4_[+3(3.24e-05)]_26_[+3(5.18e-05)]_\ [+5(7.45e-05)]_2_[+2(2.92e-05)]_16 chr19:45222233-45222313 6.69e-05 31_[+5(7.45e-05)]_2_[+2(2.92e-05)]_\ 3_[+5(1.94e-05)]_11_[+5(7.45e-05)]_1 chr17:16359495-16359575 2.20e-05 3_[+3(5.18e-05)]_[+5(1.94e-05)]_4_\ [+5(1.94e-05)]_3_[+3(5.18e-05)]_11_[+3(1.30e-05)]_5_[+5(7.45e-05)]_6 chr8:143274232-143274312 9.52e-05 11_[+5(4.86e-05)]_8_[+5(4.86e-05)]_\ 3_[+2(2.92e-05)]_14_[+3(3.24e-05)]_12 chr5:1471736-1471816 1.79e-05 22_[+3(3.24e-05)]_17_[+5(1.94e-05)]_\ 5_[+5(7.45e-05)]_12 chr20:62151273-62151353 3.68e-05 29_[+3(8.10e-05)]_15_[+5(1.94e-05)]_\ [+3(3.24e-05)]_12 chr14:94454636-94454716 9.52e-05 4_[+2(2.92e-05)]_28_[+3(3.24e-05)]_\ 7_[+2(2.92e-05)]_17 chr8:41721990-41722070 2.05e-03 7_[+1(8.18e-05)]_19_[+1(1.27e-05)]_\ 38 chr9:124991304-124991384 2.43e-04 4_[+1(1.27e-05)]_3_[+4(4.96e-05)]_\ 57 chr9:140398006-140398086 2.20e-05 4_[+3(1.30e-05)]_6_[+5(7.45e-05)]_\ [+3(1.30e-05)]_3_[+5(7.45e-05)]_[+3(1.30e-05)]_2_[+3(1.30e-05)]_5_\ [+3(1.30e-05)]_4 chr7:311969-312049 9.42e-05 28_[+2(2.92e-05)]_21_[+3(3.24e-05)]_\ 15 chr17:64972545-64972625 9.51e-03 18_[+1(3.22e-05)]_42_[+1(3.22e-05)]_\ 4 chr17:6463968-6464048 2.53e-03 [+1(8.18e-05)]_[+1(5.17e-05)]_3_\ [+4(1.95e-05)]_7_[+1(1.27e-05)]_15_[+4(1.95e-05)]_4_[+4(1.95e-05)]_3 chr11:93126080-93126160 4.95e-03 7_[+1(3.22e-05)]_5_[+1(5.17e-05)]_1_\ [+1(3.22e-05)]_7_[+4(1.95e-05)]_4_[+4(1.95e-05)]_7_[+4(1.95e-05)]_1 chr19:13319051-13319131 9.52e-05 9_[+2(2.92e-05)]_4_[+2(2.92e-05)]_\ 17_[+5(4.86e-05)]_26 chr1:230530542-230530622 9.51e-03 [+1(3.22e-05)]_14_[+1(3.22e-05)]_39_\ [+4(4.96e-05)]_3 chr7:139998171-139998251 1.74e-02 42_[+4(4.96e-05)]_6_[+4(4.96e-05)]_\ 6_[+4(4.96e-05)]_2 chr16:87734203-87734283 9.52e-05 7_[+3(3.24e-05)]_12_[+2(2.92e-05)]_\ 20_[+2(2.92e-05)]_17 chr3:195441260-195441340 3.21e-03 4_[+1(3.22e-05)]_5_[+4(6.89e-05)]_8_\ [+1(3.22e-05)]_39 chr10:133579222-13357930 2.53e-03 7_[+4(1.95e-05)]_7_[+4(1.95e-05)]_4_\ [+4(1.95e-05)]_8_[+1(1.27e-05)]_4_[+1(1.27e-05)]_1_[+1(9.43e-05)]_1 chr5:139056172-139056252 1.77e-01 80 chr20:3765785-3765865 6.92e-03 11_[+1(8.18e-05)]_22_[+1(5.17e-05)]_\ [+4(1.95e-05)]_7_[+4(1.95e-05)]_8 chr9:116449524-116449604 9.52e-05 3_[+2(2.92e-05)]_43_[+2(2.92e-05)]_\ 1_[+5(7.45e-05)]_9 chrX:2289661-2289741 6.91e-03 5_[+4(4.96e-05)]_16_[+4(4.96e-05)]_\ 13_[+4(1.95e-05)]_22 chr19:3647004-3647084 1.01e-05 14_[+2(2.92e-05)]_4_[+2(2.92e-05)]_\ 19_[+2(2.92e-05)]_4_[+2(2.92e-05)]_7 chr20:55285838-55285918 2.53e-03 15_[+4(1.95e-05)]_11_[+1(1.27e-05)]_\ 7_[+1(5.17e-05)]_12_[+4(1.95e-05)]_3 chr12:49930461-49930541 2.53e-03 1_[+4(1.95e-05)]_45_[+1(1.27e-05)]_\ 6_[+1(1.27e-05)]_4 chr16:1426252-1426332 3.12e-03 [+4(1.95e-05)]_24_[+4(1.95e-05)]_10_\ [+1(3.22e-05)]_22 chr12:133164504-13316458 7.93e-04 80 chr17:3438686-3438766 9.75e-03 35_[+1(3.22e-05)]_17_[+1(1.27e-05)]_\ 12 chr6:157034842-157034922 2.20e-05 20_[+5(1.94e-05)]_10_[+5(1.94e-05)]_\ 3_[+3(1.30e-05)]_[+5(4.86e-05)]_3_[+3(8.10e-05)]_4 chr5:944646-944726 7.31e-02 80 chr11:3252795-3252875 4.60e-05 2_[+2(2.92e-05)]_2_[+3(8.10e-05)]_\ 21_[+5(1.94e-05)]_4_[+5(4.86e-05)]_7_[+2(2.92e-05)]_4 chr11:111783949-11178402 4.95e-03 4_[+4(1.95e-05)]_2_[+1(3.22e-05)]_\ 38_[+4(1.95e-05)]_12 chr12:108735839-10873591 2.20e-05 3_[+5(1.94e-05)]_5_[+3(1.30e-05)]_8_\ 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chr19:1745802-1745882 1.95e-04 13_[+2(2.92e-05)]_51_[+5(7.45e-05)] chr8:41665453-41665533 6.69e-05 10_[+5(1.94e-05)]_6_[+5(1.94e-05)]_\ 3_[+5(1.94e-05)]_25_[+5(7.45e-05)]_4 chr7:157568920-157569000 2.53e-03 7_[+1(3.22e-05)]_9_[+4(1.95e-05)]_\ 20_[+1(3.22e-05)]_1_[+1(1.27e-05)]_11 chr1:228032757-228032837 2.41e-03 2_[+1(3.22e-05)]_37_[+1(3.22e-05)]_\ 14_[+1(3.22e-05)]_3 chr12:131574126-13157420 2.62e-03 56_[+1(9.43e-05)]_16 chr19:51315255-51315335 1.49e-02 1_[+3(3.24e-05)]_71 chr5:149918778-149918858 2.38e-01 80 chr6:16761633-16761713 7.22e-01 80 chr16:89060004-89060084 9.51e-03 11_[+1(3.22e-05)]_[+1(3.22e-05)]_7_\ [+1(8.18e-05)]_9_[+1(3.22e-05)]_21 chr17:62733056-62733136 6.41e-01 80 chr7:2952598-2952678 4.60e-05 10_[+2(2.92e-05)]_10_[+5(1.94e-05)]_\ 13_[+2(2.92e-05)]_2_[+3(8.10e-05)]_13 chr19:1165048-1165128 3.30e-01 80 chr17:79775488-79775568 2.81e-02 27_[+1(8.18e-05)]_21_[+1(8.18e-05)]_\ 16 chr19:1746373-1746453 2.54e-08 1_[+5(1.94e-05)]_5_[+5(1.94e-05)]_\ [+3(8.10e-05)]_40_[+1(8.18e-05)]_2 chr19:47162504-47162584 6.52e-05 51_[+2(2.92e-05)]_21 chr1:26207101-26207181 6.25e-02 80 chr6:159876967-159877047 1.41e-01 80 chr8:143342586-143342666 9.52e-05 3_[+2(9.72e-05)]_3_[+5(7.45e-05)]_4_\ [+2(2.92e-05)]_30_[+2(2.92e-05)]_8 chr19:900900-900980 6.62e-05 16_[+4(4.96e-05)]_56 chr7:44961249-44961329 2.48e-01 80 chr6:11919257-11919337 4.95e-03 80 chr17:39098892-39098972 6.92e-03 40_[+4(1.95e-05)]_32 chr16:85750024-85750104 4.60e-05 7_[+3(5.18e-05)]_1_[+3(5.18e-05)]_5_\ [+5(7.45e-05)]_17_[+5(1.94e-05)]_18 chr9:134391272-134391352 6.54e-02 80 chr2:171684783-171684863 9.51e-03 23_[+1(3.22e-05)]_35_[+1(3.22e-05)]_\ 6 chr6:44106790-44106870 4.88e-03 11_[+4(1.95e-05)]_10_[+4(1.95e-05)]_\ 9_[+1(3.22e-05)]_26 chr9:116327642-116327722 6.69e-05 22_[+5(1.94e-05)]_4_[+5(1.94e-05)]_\ 7_[+5(1.94e-05)]_7_[+5(1.94e-05)]_8 chr20:61997499-61997579 6.34e-02 80 chr10:121302193-12130227 2.20e-05 24_[+5(1.94e-05)]_10_[+5(1.94e-05)]_\ 1_[+5(1.94e-05)]_3_[+3(1.30e-05)]_10 chr5:172698465-172698545 1.55e-03 47_[+3(8.10e-05)]_25 chr11:267168-267248 6.89e-05 71_[+3(1.30e-05)]_1 chr7:155138975-155139055 8.72e-02 80 chr12:111695503-11169558 1.83e-02 17_[+1(5.17e-05)]_7_[+1(5.17e-05)]_\ 13_[+1(3.22e-05)]_19 chr6:10415308-10415388 2.20e-05 11_[+5(1.94e-05)]_1_[+5(1.94e-05)]_\ 13_[+5(1.94e-05)]_[+3(1.30e-05)]_5_[+5(1.94e-05)]_10 chr22:36970047-36970127 1.46e-04 18_[+3(3.24e-05)]_54 chr17:46116865-46116945 2.41e-05 13_[+5(1.94e-05)]_5_[+2(2.92e-05)]_\ 46 chr14:73166594-73166674 1.80e-06 52_[+2(2.92e-05)]_20 chr1:43871681-43871761 1.19e-01 80 chr6:168849114-168849194 6.69e-05 17_[+2(2.92e-05)]_27_[+5(1.94e-05)]_\ 20 chrX:48325943-48326023 4.60e-05 66_[+5(1.94e-05)]_6 chr6:168635758-168635838 6.66e-05 [+5(1.94e-05)]_19_[+5(1.94e-05)]_20_\ [+5(1.94e-05)]_17 chr11:65781287-65781367 1.51e-07 22_[+5(1.94e-05)]_26_[+5(1.94e-05)]_\ 16 chr19:14346477-14346557 1.52e-02 24_[+1(5.17e-05)]_2_[+1(8.18e-05)]_\ 9_[+1(3.22e-05)]_9_[+1(8.18e-05)]_4 chr19:49136351-49136431 3.36e-02 3_[+4(9.86e-05)]_69 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n05.farnam.hpc.yale.internal ********************************************************************************