******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/NFRKB.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr7:106209010-106209090 1.0000 80 chr4:85220055-85220135 1.0000 80 chr1:110438953-110439033 1.0000 80 chr1:10033-10113 1.0000 80 chr3:50126332-50126412 1.0000 80 chr14:102177762-10217784 1.0000 80 chr22:41487804-41487884 1.0000 80 chr16:27210115-27210195 1.0000 80 chr19:2059211-2059291 1.0000 80 chr12:125348765-12534884 1.0000 80 chr4:56708152-56708232 1.0000 80 chr9:108545222-108545302 1.0000 80 chr2:156087846-156087926 1.0000 80 chr19:52050670-52050750 1.0000 80 chr15:95398697-95398777 1.0000 80 chr14:102180239-10218031 1.0000 80 chr6:30684679-30684759 1.0000 80 chr16:87812127-87812207 1.0000 80 chr16:15671031-15671111 1.0000 80 chr2:68906814-68906894 1.0000 80 chr2:108363566-108363646 1.0000 80 chr2:160471500-160471580 1.0000 80 chr4:129438738-129438818 1.0000 80 chr14:35856210-35856290 1.0000 80 chr1:27114141-27114221 1.0000 80 chr19:3608156-3608236 1.0000 80 chr6:147198106-147198186 1.0000 80 chr9:103289683-103289763 1.0000 80 chr3:60263214-60263294 1.0000 80 chr2:85765652-85765732 1.0000 80 chr11:122933417-12293349 1.0000 80 chr2:206950917-206950997 1.0000 80 chr6:32938176-32938256 1.0000 80 chr5:103415732-103415812 1.0000 80 chr20:22392968-22393048 1.0000 80 chr19:50877758-50877838 1.0000 80 chr4:10183403-10183483 1.0000 80 chr7:30155361-30155441 1.0000 80 chr6:43894972-43895052 1.0000 80 chr6:89130698-89130778 1.0000 80 chr5:180473040-180473120 1.0000 80 chr1:185862139-185862219 1.0000 80 chr6:12011155-12011235 1.0000 80 chr17:27279040-27279120 1.0000 80 chr3:15228267-15228347 1.0000 80 chr18:3447837-3447917 1.0000 80 chr14:76724285-76724365 1.0000 80 chr10:32635696-32635776 1.0000 80 chr20:45985429-45985509 1.0000 80 chr6:37150825-37150905 1.0000 80 chr11:77762067-77762147 1.0000 80 chr12:53773169-53773249 1.0000 80 chr9:11064956-11065036 1.0000 80 chr3:178577821-178577901 1.0000 80 chr6:26033879-26033959 1.0000 80 chr15:51329771-51329851 1.0000 80 chr3:6549498-6549578 1.0000 80 chr12:6722490-6722570 1.0000 80 chr13:53226548-53226628 1.0000 80 chr3:195870883-195870963 1.0000 80 chr21:40824153-40824233 1.0000 80 chr16:8159709-8159789 1.0000 80 chr2:152561233-152561313 1.0000 80 chr6:30582893-30582973 1.0000 80 chr12:57848562-57848642 1.0000 80 chr13:50018038-50018118 1.0000 80 chr10:74033164-74033244 1.0000 80 chr18:976960-977040 1.0000 80 chr22:38902800-38902880 1.0000 80 chr11:118661262-11866134 1.0000 80 chr16:15671234-15671314 1.0000 80 chr9:73035575-73035655 1.0000 80 chr22:35795870-35795950 1.0000 80 chr3:176915943-176916023 1.0000 80 chr10:97889705-97889785 1.0000 80 chr9:139042634-139042714 1.0000 80 chr14:21777154-21777234 1.0000 80 chr11:61601862-61601942 1.0000 80 chr17:77801100-77801180 1.0000 80 chr6:37391859-37391939 1.0000 80 chr19:55919894-55919974 1.0000 80 chr14:23476699-23476779 1.0000 80 chr21:23582243-23582323 1.0000 80 chr6:7150972-7151052 1.0000 80 chr12:14538128-14538208 1.0000 80 chr2:48373074-48373154 1.0000 80 chr16:84570879-84570959 1.0000 80 chr3:9439982-9440062 1.0000 80 chr10:74032963-74033043 1.0000 80 chr4:10175558-10175638 1.0000 80 chr3:45175773-45175853 1.0000 80 chr9:135865687-135865767 1.0000 80 chr1:70017600-70017680 1.0000 80 chr18:9870318-9870398 1.0000 80 chr18:10578339-10578419 1.0000 80 chr21:15955717-15955797 1.0000 80 chrX:47004570-47004650 1.0000 80 chr7:26457857-26457937 1.0000 80 chr1:26452548-26452628 1.0000 80 chr7:644529-644609 1.0000 80 chr12:57848761-57848841 1.0000 80 chr1:61105947-61106027 1.0000 80 chr12:54412117-54412197 1.0000 80 chr3:50639069-50639149 1.0000 80 chr5:168006991-168007071 1.0000 80 chr2:26635050-26635130 1.0000 80 chr12:122240755-12224083 1.0000 80 chr6:43894009-43894089 1.0000 80 chr19:46242956-46243036 1.0000 80 chr16:48644245-48644325 1.0000 80 chr16:70462724-70462804 1.0000 80 chr10:30841234-30841314 1.0000 80 chr22:38199010-38199090 1.0000 80 chr6:28722453-28722533 1.0000 80 chr6:43878913-43878993 1.0000 80 chr12:56211512-56211592 1.0000 80 chr3:196359053-196359133 1.0000 80 chr9:132250360-132250440 1.0000 80 chr6:138276672-138276752 1.0000 80 chr1:18929117-18929197 1.0000 80 chr3:170602189-170602269 1.0000 80 chr6:32939181-32939261 1.0000 80 chr1:117230782-117230862 1.0000 80 chr1:213218953-213219033 1.0000 80 chr19:50269392-50269472 1.0000 80 chr22:40573936-40574016 1.0000 80 chr20:44601288-44601368 1.0000 80 chr2:185069147-185069227 1.0000 80 chr15:43802736-43802816 1.0000 80 chr2:224588976-224589056 1.0000 80 chr17:25672729-25672809 1.0000 80 chr5:127088647-127088727 1.0000 80 chr6:2990253-2990333 1.0000 80 chr3:128134588-128134668 1.0000 80 chr1:113161720-113161800 1.0000 80 chr7:112903624-112903704 1.0000 80 chr16:4294430-4294510 1.0000 80 chr16:8159908-8159988 1.0000 80 chr7:39053069-39053149 1.0000 80 chr6:33386441-33386521 1.0000 80 chr6:42713779-42713859 1.0000 80 chr3:196064375-196064455 1.0000 80 chr4:142253965-142254045 1.0000 80 chr3:185655265-185655345 1.0000 80 chr17:41277909-41277989 1.0000 80 chr8:130594104-130594184 1.0000 80 chr10:32635899-32635979 1.0000 80 chr14:102149887-10214996 1.0000 80 chr2:70351678-70351758 1.0000 80 chr17:62501815-62501895 1.0000 80 chr19:40939654-40939734 1.0000 80 chr11:118662047-11866212 1.0000 80 chr16:15685331-15685411 1.0000 80 chr16:27210314-27210394 1.0000 80 chr12:53834829-53834909 1.0000 80 chr14:21737551-21737631 1.0000 80 chr7:129844738-129844818 1.0000 80 chr17:25431957-25432037 1.0000 80 chr5:137911897-137911977 1.0000 80 chr5:43067025-43067105 1.0000 80 chr14:90849586-90849666 1.0000 80 chrX:102941567-102941647 1.0000 80 chr20:4055532-4055612 1.0000 80 chr12:123011248-12301132 1.0000 80 chr11:9336683-9336763 1.0000 80 chr6:168257754-168257834 1.0000 80 chr19:52693365-52693445 1.0000 80 chr19:54641385-54641465 1.0000 80 chr15:82162864-82162944 1.0000 80 chr1:67896038-67896118 1.0000 80 chr19:841489-841569 1.0000 80 chr16:29284925-29285005 1.0000 80 chr19:4815335-4815415 1.0000 80 chr11:34938254-34938334 1.0000 80 chr12:92073294-92073374 1.0000 80 chr16:29634176-29634256 1.0000 80 chr2:76099447-76099527 1.0000 80 chr5:180611636-180611716 1.0000 80 chr2:68907014-68907094 1.0000 80 chr12:53400427-53400507 1.0000 80 chr7:128706611-128706691 1.0000 80 chr12:122102040-12210212 1.0000 80 chr1:179851514-179851594 1.0000 80 chr9:86595384-86595464 1.0000 80 chr12:131727565-13172764 1.0000 80 chr8:129356148-129356228 1.0000 80 chr18:9008727-9008807 1.0000 80 chr7:26239915-26239995 1.0000 80 chr17:30677148-30677228 1.0000 80 chr6:11932085-11932165 1.0000 80 chr7:106808170-106808250 1.0000 80 chr3:150320891-150320971 1.0000 80 chr15:79165579-79165659 1.0000 80 chr1:67896241-67896321 1.0000 80 chr19:45874239-45874319 1.0000 80 chr16:75682594-75682674 1.0000 80 chr1:145455860-145455940 1.0000 80 chr1:161195924-161196004 1.0000 80 chr9:124133183-124133263 1.0000 80 chr15:93443695-93443775 1.0000 80 chr7:153111140-153111220 1.0000 80 chr1:182268879-182268959 1.0000 80 chr2:242254893-242254973 1.0000 80 chr1:204476721-204476801 1.0000 80 chr11:59312622-59312702 1.0000 80 chr1:244530527-244530607 1.0000 80 chr1:178994759-178994839 1.0000 80 chr4:40211912-40211992 1.0000 80 chr12:110841680-11084176 1.0000 80 chr20:43540059-43540139 1.0000 80 chr9:101836368-101836448 1.0000 80 chr3:138595131-138595211 1.0000 80 chr17:77805308-77805388 1.0000 80 chr5:11540-11620 1.0000 80 chr6:26199603-26199683 1.0000 80 chr3:128135379-128135459 1.0000 80 chr22:29664339-29664419 1.0000 80 chr20:52240250-52240330 1.0000 80 chr9:33511010-33511090 1.0000 80 chr12:122239069-12223914 1.0000 80 chr13:37574830-37574910 1.0000 80 chr9:124132983-124133063 1.0000 80 chr1:28562404-28562484 1.0000 80 chr14:58764700-58764780 1.0000 80 chr14:23235692-23235772 1.0000 80 chr12:108955028-10895510 1.0000 80 chr3:177057154-177057234 1.0000 80 chr12:64798537-64798617 1.0000 80 chr1:100828737-100828817 1.0000 80 chr8:67579854-67579934 1.0000 80 chr1:31241524-31241604 1.0000 80 chr11:10879322-10879402 1.0000 80 chr6:42751372-42751452 1.0000 80 chr20:45989168-45989248 1.0000 80 chr1:45478133-45478213 1.0000 80 chr20:353177-353257 1.0000 80 chr7:102678520-102678600 1.0000 80 chr16:85589599-85589679 1.0000 80 chr16:89045126-89045206 1.0000 80 chr11:65189368-65189448 1.0000 80 chr1:173239025-173239105 1.0000 80 chr6:135819545-135819625 1.0000 80 chr4:15090967-15091047 1.0000 80 chr6:30583092-30583172 1.0000 80 chr18:63925312-63925392 1.0000 80 chr7:65958388-65958468 1.0000 80 chr2:26981280-26981360 1.0000 80 chr8:30602245-30602325 1.0000 80 chr6:13815653-13815733 1.0000 80 chr12:54719011-54719091 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_NFRKB/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/NFRKB.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.242 C 0.263 G 0.267 T 0.227 Background letter frequencies (from file dataset with add-one prior applied): A 0.242 C 0.263 G 0.267 T 0.227 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CCATYTTG MEME-1 width = 8 sites = 33 llr = 310 E-value = 1.3e-016 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCATYTTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::a:1::1 pos.-specific C aa::5::2 probability G :::::::7 matrix T :::a4aa1 bits 2.1 ** ** 1.9 **** ** 1.7 **** ** 1.5 **** ** Relative 1.3 **** ** Entropy 1.1 **** ** (13.6 bits) 0.9 **** ** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCATCTTG consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCATYTTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr4:15090967-15091047 33 2.56e-05 tgcagtggcg ccatcttg gctcactgca chr1:100828737-100828817 20 2.56e-05 gatggagctg ccattttg aacatgccta chr20:52240250-52240330 51 2.56e-05 AGAGCAGTAG CCATTTTG GGGAGGGGGA chr4:40211912-40211992 69 2.56e-05 AGACTGCCTG CCATTTTG TTGT chr7:153111140-153111220 68 2.56e-05 gtggcaatca ccatcttg gagtc chr17:30677148-30677228 33 2.56e-05 AGGCCGTCGG CCATTTTG TGTCTGCTTC chr2:76099447-76099527 58 2.56e-05 aggcttgcca ccatcttg gaagcggccc chr16:29634176-29634256 73 2.56e-05 CTAGGAGCTT CCATCTTG chr12:123011248-12301132 38 2.56e-05 GGCCGCGGCG CCATTTTG TCTACACACA chr2:70351678-70351758 41 2.56e-05 CTACTAGATG CCATCTTG GAAAACAAAA chr7:39053069-39053149 67 2.56e-05 tcctatgcgg ccatcttg gctcct chr1:113161720-113161800 12 2.56e-05 CCACGGTCCG CCATCTTG CCGCTATCGC chr2:224588976-224589056 40 2.56e-05 gatgaagctg ccattttg aacatgccta chr1:70017600-70017680 2 2.56e-05 g ccattttg atcatgccta chr6:30582893-30582973 25 2.56e-05 CGGAGGGACG CCATTTTG TAATGGAGAA chr16:8159709-8159789 22 2.56e-05 gatggtgcca ccatcttg aacatgtcta chr15:51329771-51329851 60 2.56e-05 tcctattcgg ccatcttg gctcctcctg chr14:35856210-35856290 18 2.56e-05 gatggagccg ccatcttg aacatgattg chr3:50126332-50126412 53 2.56e-05 GGCGGAGGCG CCATTTTG TGTAGCCGCC chr15:82162864-82162944 13 5.08e-05 TAAGTCCTGC CCATTTTC CTTCAGGAAC chr3:185655265-185655345 72 5.08e-05 GACGCAGCGG CCATTTTC A chr16:4294430-4294510 55 5.08e-05 aatggcggct ccatcttc ccttctctgc chr10:30841234-30841314 10 5.08e-05 atggcggct ccatcttc ccttcttttg chr9:11064956-11065036 44 5.08e-05 catggaggct ccatcttc ccttttcttc chr14:76724285-76724365 66 5.08e-05 tccctcagcc ccattttc ttcaatg chr9:108545222-108545302 67 5.08e-05 cagaaatcac ccatcttc tgtgta chr6:42713779-42713859 29 6.35e-05 CTGACGGACT CCATATTG GCTTCAAGCT chr17:25672729-25672809 49 6.35e-05 gatggagcct ccatattg aacatgacat chr17:27279040-27279120 41 6.35e-05 GACCAGGCCA CCATATTG GTAAAGAGAA chr2:48373074-48373154 27 8.53e-05 tggcagcgtt ccattttt ggcagcctta chr22:35795870-35795950 12 8.53e-05 CGCCCCTCCG CCATCTTT GCGTCCGCCC chr11:10879322-10879402 13 1.08e-04 CCCGCGACCG CCATCTTA GGCAGTTCCA chr6:32938176-32938256 12 1.08e-04 AGATTGGCGG CCATTTTA GACGCAGTAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCATYTTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:15090967-15091047 2.6e-05 32_[+1]_40 chr1:100828737-100828817 2.6e-05 19_[+1]_53 chr20:52240250-52240330 2.6e-05 50_[+1]_22 chr4:40211912-40211992 2.6e-05 68_[+1]_4 chr7:153111140-153111220 2.6e-05 67_[+1]_5 chr17:30677148-30677228 2.6e-05 32_[+1]_40 chr2:76099447-76099527 2.6e-05 57_[+1]_15 chr16:29634176-29634256 2.6e-05 72_[+1] chr12:123011248-12301132 2.6e-05 37_[+1]_35 chr2:70351678-70351758 2.6e-05 40_[+1]_32 chr7:39053069-39053149 2.6e-05 66_[+1]_6 chr1:113161720-113161800 2.6e-05 11_[+1]_61 chr2:224588976-224589056 2.6e-05 39_[+1]_33 chr1:70017600-70017680 2.6e-05 1_[+1]_71 chr6:30582893-30582973 2.6e-05 24_[+1]_48 chr16:8159709-8159789 2.6e-05 21_[+1]_51 chr15:51329771-51329851 2.6e-05 59_[+1]_13 chr14:35856210-35856290 2.6e-05 17_[+1]_55 chr3:50126332-50126412 2.6e-05 52_[+1]_20 chr15:82162864-82162944 5.1e-05 12_[+1]_60 chr3:185655265-185655345 5.1e-05 71_[+1]_1 chr16:4294430-4294510 5.1e-05 54_[+1]_18 chr10:30841234-30841314 5.1e-05 9_[+1]_63 chr9:11064956-11065036 5.1e-05 43_[+1]_29 chr14:76724285-76724365 5.1e-05 65_[+1]_7 chr9:108545222-108545302 5.1e-05 66_[+1]_6 chr6:42713779-42713859 6.3e-05 28_[+1]_44 chr17:25672729-25672809 6.3e-05 48_[+1]_24 chr17:27279040-27279120 6.3e-05 40_[+1]_32 chr2:48373074-48373154 8.5e-05 26_[+1]_46 chr22:35795870-35795950 8.5e-05 11_[+1]_61 chr11:10879322-10879402 0.00011 12_[+1]_60 chr6:32938176-32938256 0.00011 11_[+1]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCATYTTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCATYTTG width=8 seqs=33 chr4:15090967-15091047 ( 33) CCATCTTG 1 chr1:100828737-100828817 ( 20) CCATTTTG 1 chr20:52240250-52240330 ( 51) CCATTTTG 1 chr4:40211912-40211992 ( 69) CCATTTTG 1 chr7:153111140-153111220 ( 68) CCATCTTG 1 chr17:30677148-30677228 ( 33) CCATTTTG 1 chr2:76099447-76099527 ( 58) CCATCTTG 1 chr16:29634176-29634256 ( 73) CCATCTTG 1 chr12:123011248-12301132 ( 38) CCATTTTG 1 chr2:70351678-70351758 ( 41) CCATCTTG 1 chr7:39053069-39053149 ( 67) CCATCTTG 1 chr1:113161720-113161800 ( 12) CCATCTTG 1 chr2:224588976-224589056 ( 40) CCATTTTG 1 chr1:70017600-70017680 ( 2) CCATTTTG 1 chr6:30582893-30582973 ( 25) CCATTTTG 1 chr16:8159709-8159789 ( 22) CCATCTTG 1 chr15:51329771-51329851 ( 60) CCATCTTG 1 chr14:35856210-35856290 ( 18) CCATCTTG 1 chr3:50126332-50126412 ( 53) CCATTTTG 1 chr15:82162864-82162944 ( 13) CCATTTTC 1 chr3:185655265-185655345 ( 72) CCATTTTC 1 chr16:4294430-4294510 ( 55) CCATCTTC 1 chr10:30841234-30841314 ( 10) CCATCTTC 1 chr9:11064956-11065036 ( 44) CCATCTTC 1 chr14:76724285-76724365 ( 66) CCATTTTC 1 chr9:108545222-108545302 ( 67) CCATCTTC 1 chr6:42713779-42713859 ( 29) CCATATTG 1 chr17:25672729-25672809 ( 49) CCATATTG 1 chr17:27279040-27279120 ( 41) CCATATTG 1 chr2:48373074-48373154 ( 27) CCATTTTT 1 chr22:35795870-35795950 ( 12) CCATCTTT 1 chr11:10879322-10879402 ( 13) CCATCTTA 1 chr6:32938176-32938256 ( 12) CCATTTTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCATYTTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.87609 E= 1.3e-016 -1169 192 -1169 -1169 -1169 192 -1169 -1169 205 -1169 -1169 -1169 -1169 -1169 -1169 214 -141 88 -1169 90 -1169 -1169 -1169 214 -1169 -1169 -1169 214 -200 -31 132 -191 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCATYTTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 1.3e-016 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.090909 0.484848 0.000000 0.424242 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.060606 0.212121 0.666667 0.060606 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCATYTTG MEME-1 regular expression -------------------------------------------------------------------------------- CCAT[CT]TT[GC] -------------------------------------------------------------------------------- Time 5.05 secs. ******************************************************************************** ******************************************************************************** MOTIF SAARATGG MEME-2 width = 8 sites = 26 llr = 240 E-value = 1.6e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif SAARATGG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :a84a::: pos.-specific C 7::::::: probability G 3:26::aa matrix T :::::a:: bits 2.1 * ** 1.9 * **** 1.7 * **** 1.5 * **** Relative 1.3 ** **** Entropy 1.1 ******** (13.3 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAAGATGG consensus G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAARATGG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:150320891-150320971 55 1.61e-05 TGCACACTAC CAAGATGG TGGTGAGTCA chr1:67896038-67896118 26 1.61e-05 GCTCTTCCCA CAAGATGG CCGGGCCGAG chr15:43802736-43802816 61 1.61e-05 CAGAGAGGGA CAAGATGG CTCCCCTCAG chr7:26457857-26457937 25 1.61e-05 AGTGAGAAGG CAAGATGG CGGCAGACCC chr13:50018038-50018118 61 1.61e-05 CAGCCACACA CAAGATGG CAGCCTCACA chr2:160471500-160471580 5 1.61e-05 TGCC CAAGATGG CGAAACGCTT chr15:95398697-95398777 2 1.61e-05 A CAAGATGG CGGCAGGAGG chr11:59312622-59312702 68 3.07e-05 aactaagtag caaaatgg aggag chr12:122102040-12210212 22 3.07e-05 cagaggaaag caaaatgg agacatggag chr14:21737551-21737631 27 3.07e-05 CGTCTCTTCA CAAAATGG CCCCCGAGTC chr3:196064375-196064455 36 3.07e-05 cactaagaag caaaatgg tggagtttag chr16:4294430-4294510 42 3.07e-05 caatcatgtt caaaatgg cggctccatc chr22:40573936-40574016 54 3.07e-05 TAGTTCAAGC CAAAATGG CCGACAGAGT chr10:30841234-30841314 55 3.07e-05 aagaagcaga caaaatgg cactgatcaa chr1:100828737-100828817 7 4.71e-05 aaaaga gaagatgg agctgccatt chr17:25672729-25672809 36 4.71e-05 aaagaaaagg gaagatgg agcctccata chr16:8159709-8159789 9 4.71e-05 agagaagg gaagatgg tgccaccatc chr14:35856210-35856290 5 4.71e-05 aaaa gaagatgg agccgccatc chr11:118662047-11866212 23 6.19e-05 TTCCTGAGGA GAAAATGG AGGGCCCTTC chr19:40939654-40939734 71 6.19e-05 gctggggcca gaaaatgg ag chr13:53226548-53226628 56 6.19e-05 AAAAACTAGG GAAAATGG GAGCTCGAAG chr2:185069147-185069227 62 7.96e-05 ccgtgttagc caggatgg tctcgatctc chr3:45175773-45175853 53 7.96e-05 ccgtgttagc caggatgg tctcgatctc chr3:6549498-6549578 44 7.96e-05 ccgtgttagc caggatgg tctcaatctc chr6:43894972-43895052 56 1.14e-04 GATGCTGTTT GAGGATGG TCCACGTGAG chr22:38902800-38902880 45 1.30e-04 TGGGCCCGCT GAGAATGG CGGCGGGCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAARATGG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:150320891-150320971 1.6e-05 54_[+2]_18 chr1:67896038-67896118 1.6e-05 25_[+2]_47 chr15:43802736-43802816 1.6e-05 60_[+2]_12 chr7:26457857-26457937 1.6e-05 24_[+2]_48 chr13:50018038-50018118 1.6e-05 60_[+2]_12 chr2:160471500-160471580 1.6e-05 4_[+2]_68 chr15:95398697-95398777 1.6e-05 1_[+2]_71 chr11:59312622-59312702 3.1e-05 67_[+2]_5 chr12:122102040-12210212 3.1e-05 21_[+2]_51 chr14:21737551-21737631 3.1e-05 26_[+2]_46 chr3:196064375-196064455 3.1e-05 35_[+2]_37 chr16:4294430-4294510 3.1e-05 41_[+2]_31 chr22:40573936-40574016 3.1e-05 53_[+2]_19 chr10:30841234-30841314 3.1e-05 54_[+2]_18 chr1:100828737-100828817 4.7e-05 6_[+2]_66 chr17:25672729-25672809 4.7e-05 35_[+2]_37 chr16:8159709-8159789 4.7e-05 8_[+2]_64 chr14:35856210-35856290 4.7e-05 4_[+2]_68 chr11:118662047-11866212 6.2e-05 22_[+2]_50 chr19:40939654-40939734 6.2e-05 70_[+2]_2 chr13:53226548-53226628 6.2e-05 55_[+2]_17 chr2:185069147-185069227 8e-05 61_[+2]_11 chr3:45175773-45175853 8e-05 52_[+2]_20 chr3:6549498-6549578 8e-05 43_[+2]_29 chr6:43894972-43895052 0.00011 55_[+2]_17 chr22:38902800-38902880 0.00013 44_[+2]_28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAARATGG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SAARATGG width=8 seqs=26 chr3:150320891-150320971 ( 55) CAAGATGG 1 chr1:67896038-67896118 ( 26) CAAGATGG 1 chr15:43802736-43802816 ( 61) CAAGATGG 1 chr7:26457857-26457937 ( 25) CAAGATGG 1 chr13:50018038-50018118 ( 61) CAAGATGG 1 chr2:160471500-160471580 ( 5) CAAGATGG 1 chr15:95398697-95398777 ( 2) CAAGATGG 1 chr11:59312622-59312702 ( 68) CAAAATGG 1 chr12:122102040-12210212 ( 22) CAAAATGG 1 chr14:21737551-21737631 ( 27) CAAAATGG 1 chr3:196064375-196064455 ( 36) CAAAATGG 1 chr16:4294430-4294510 ( 42) CAAAATGG 1 chr22:40573936-40574016 ( 54) CAAAATGG 1 chr10:30841234-30841314 ( 55) CAAAATGG 1 chr1:100828737-100828817 ( 7) GAAGATGG 1 chr17:25672729-25672809 ( 36) GAAGATGG 1 chr16:8159709-8159789 ( 9) GAAGATGG 1 chr14:35856210-35856290 ( 5) GAAGATGG 1 chr11:118662047-11866212 ( 23) GAAAATGG 1 chr19:40939654-40939734 ( 71) GAAAATGG 1 chr13:53226548-53226628 ( 56) GAAAATGG 1 chr2:185069147-185069227 ( 62) CAGGATGG 1 chr3:45175773-45175853 ( 53) CAGGATGG 1 chr3:6549498-6549578 ( 44) CAGGATGG 1 chr6:43894972-43895052 ( 56) GAGGATGG 1 chr22:38902800-38902880 ( 45) GAGAATGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAARATGG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.20831 E= 1.6e-005 -1134 131 37 -1134 205 -1134 -1134 -1134 174 -1134 -47 -1134 80 -1134 111 -1134 205 -1134 -1134 -1134 -1134 -1134 -1134 214 -1134 -1134 190 -1134 -1134 -1134 190 -1134 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAARATGG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 1.6e-005 0.000000 0.653846 0.346154 0.000000 1.000000 0.000000 0.000000 0.000000 0.807692 0.000000 0.192308 0.000000 0.423077 0.000000 0.576923 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAARATGG MEME-2 regular expression -------------------------------------------------------------------------------- [CG]AA[GA]ATGG -------------------------------------------------------------------------------- Time 8.86 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTTTTTG MEME-3 width = 8 sites = 18 llr = 171 E-value = 5.0e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTTTTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1::1:1:: pos.-specific C ::21:::1 probability G :::1:::9 matrix T 9a87a9a: bits 2.1 * * * 1.9 * *** 1.7 ** *** 1.5 *** **** Relative 1.3 *** **** Entropy 1.1 *** **** (13.7 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTTTTTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:204476721-204476801 21 8.29e-06 ttgtttttgt tttttttg agacggagcc chr15:93443695-93443775 24 8.29e-06 GATTCGAACC TTTTTTTG GGAGAAAAGC chr16:75682594-75682674 41 8.29e-06 ATTAttgttc tttttttg cgatgggtct chr12:92073294-92073374 23 8.29e-06 tttgtttttg tttttttg agatggagtc chr2:185069147-185069227 19 8.29e-06 cccggctaat tttttttg tatttttagt chr21:23582243-23582323 62 8.29e-06 gcccagctca tttttttg tatttttagt chr3:6549498-6549578 4 8.29e-06 tgc tttttttg ttttagtaga chr10:30841234-30841314 20 1.79e-05 ccatcttccc ttcttttg tcagccacgt chr18:976960-977040 7 1.79e-05 tttctg ttcttttg cctttgctga chr19:2059211-2059291 53 2.67e-05 TTATTCACTG TTTATTTG CCATTCAAAG chr17:25431957-25432037 3 3.63e-05 cc tttctttg actcggaaag chr3:60263214-60263294 9 3.63e-05 tcttccct tttctttg ccagccacat chr1:145455860-145455940 1 4.52e-05 . ATTTTTTG TAAATAAGGA chr3:45175773-45175853 10 4.52e-05 acccagcta attttttg tatttttagt chr12:14538128-14538208 20 5.49e-05 TGGGAGGGGC TTTGTTTG TTACATAGCT chr1:213218953-213219033 10 7.20e-05 tgtcccata tttttatg gccagttcat chr3:9439982-9440062 56 7.20e-05 ACAGGCATAC TTTTTTTC TCTCCCCGAT chr6:138276672-138276752 11 8.22e-05 tctaatggcc ttcatttg catatcaaag -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:204476721-204476801 8.3e-06 20_[+3]_52 chr15:93443695-93443775 8.3e-06 23_[+3]_49 chr16:75682594-75682674 8.3e-06 40_[+3]_32 chr12:92073294-92073374 8.3e-06 22_[+3]_50 chr2:185069147-185069227 8.3e-06 18_[+3]_54 chr21:23582243-23582323 8.3e-06 61_[+3]_11 chr3:6549498-6549578 8.3e-06 3_[+3]_69 chr10:30841234-30841314 1.8e-05 19_[+3]_53 chr18:976960-977040 1.8e-05 6_[+3]_66 chr19:2059211-2059291 2.7e-05 52_[+3]_20 chr17:25431957-25432037 3.6e-05 2_[+3]_70 chr3:60263214-60263294 3.6e-05 8_[+3]_64 chr1:145455860-145455940 4.5e-05 [+3]_72 chr3:45175773-45175853 4.5e-05 9_[+3]_63 chr12:14538128-14538208 5.5e-05 19_[+3]_53 chr1:213218953-213219033 7.2e-05 9_[+3]_63 chr3:9439982-9440062 7.2e-05 55_[+3]_17 chr6:138276672-138276752 8.2e-05 10_[+3]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTTTTG width=8 seqs=18 chr1:204476721-204476801 ( 21) TTTTTTTG 1 chr15:93443695-93443775 ( 24) TTTTTTTG 1 chr16:75682594-75682674 ( 41) TTTTTTTG 1 chr12:92073294-92073374 ( 23) TTTTTTTG 1 chr2:185069147-185069227 ( 19) TTTTTTTG 1 chr21:23582243-23582323 ( 62) TTTTTTTG 1 chr3:6549498-6549578 ( 4) TTTTTTTG 1 chr10:30841234-30841314 ( 20) TTCTTTTG 1 chr18:976960-977040 ( 7) TTCTTTTG 1 chr19:2059211-2059291 ( 53) TTTATTTG 1 chr17:25431957-25432037 ( 3) TTTCTTTG 1 chr3:60263214-60263294 ( 9) TTTCTTTG 1 chr1:145455860-145455940 ( 1) ATTTTTTG 1 chr3:45175773-45175853 ( 10) ATTTTTTG 1 chr12:14538128-14538208 ( 20) TTTGTTTG 1 chr1:213218953-213219033 ( 10) TTTTTATG 1 chr3:9439982-9440062 ( 56) TTTTTTTC 1 chr6:138276672-138276752 ( 11) TTCATTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8329 E= 5.0e-001 -112 -1081 -1081 197 -1081 -1081 -1081 214 -1081 -66 -1081 187 -112 -124 -226 167 -1081 -1081 -1081 214 -212 -1081 -1081 205 -1081 -1081 -1081 214 -1081 -224 182 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 5.0e-001 0.111111 0.000000 0.000000 0.888889 0.000000 0.000000 0.000000 1.000000 0.000000 0.166667 0.000000 0.833333 0.111111 0.111111 0.055556 0.722222 0.000000 0.000000 0.000000 1.000000 0.055556 0.000000 0.000000 0.944444 0.000000 0.000000 0.000000 1.000000 0.000000 0.055556 0.944444 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTG MEME-3 regular expression -------------------------------------------------------------------------------- TTTTTTTG -------------------------------------------------------------------------------- Time 12.64 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTCTTTT MEME-4 width = 8 sites = 2 llr = 23 E-value = 2.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTCTTTT MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::a:::: probability G :::::::: matrix T aaa:aaaa bits 2.1 *** **** 1.9 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (16.9 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTCTTTT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCTTTT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr15:93443695-93443775 55 8.17e-06 TTTTAGGAGC TTTCTTTT CGTGCCTTGT chr19:50877758-50877838 40 8.17e-06 CATAGTCCCA TTTCTTTT TTATAAAGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCTTTT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:93443695-93443775 8.2e-06 54_[+4]_18 chr19:50877758-50877838 8.2e-06 39_[+4]_33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCTTTT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTCTTTT width=8 seqs=2 chr15:93443695-93443775 ( 55) TTTCTTTT 1 chr19:50877758-50877838 ( 40) TTTCTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCTTTT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 2.4e+004 -765 -765 -765 213 -765 -765 -765 213 -765 -765 -765 213 -765 192 -765 -765 -765 -765 -765 213 -765 -765 -765 213 -765 -765 -765 213 -765 -765 -765 213 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCTTTT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.4e+004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCTTTT MEME-4 regular expression -------------------------------------------------------------------------------- TTTCTTTT -------------------------------------------------------------------------------- Time 16.39 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTGTTTT MEME-5 width = 8 sites = 7 llr = 74 E-value = 1.6e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTGTTTT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::::::: probability G :13a:::: matrix T a97:aaaa bits 2.1 * **** 1.9 * ***** 1.7 * ***** 1.5 ** ***** Relative 1.3 ******** Entropy 1.1 ******** (15.3 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTGTTTT consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGTTTT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:204476721-204476801 10 8.29e-06 ttttttgtt tttgtttt tgtttttttt chr12:92073294-92073374 13 8.29e-06 tttttgtttg tttgtttt tgtttttttg chr18:9870318-9870398 4 8.29e-06 TTA TTTGTTTT TATTTTCATC chr18:3447837-3447917 44 8.29e-06 TCCTGGAAAG TTTGTTTT CAAGCTATAA chr11:65189368-65189448 22 1.80e-05 GCACAATATC TTGGTTTT ACATTATTTT chr6:37391859-37391939 22 1.80e-05 agcttctagc ttggtttt ctatgtctgc chr20:44601288-44601368 30 2.78e-05 TTAGGTTTGA TGTGTTTT GTtgggaagg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGTTTT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:204476721-204476801 8.3e-06 9_[+5]_63 chr12:92073294-92073374 8.3e-06 12_[+5]_60 chr18:9870318-9870398 8.3e-06 3_[+5]_69 chr18:3447837-3447917 8.3e-06 43_[+5]_29 chr11:65189368-65189448 1.8e-05 21_[+5]_51 chr6:37391859-37391939 1.8e-05 21_[+5]_51 chr20:44601288-44601368 2.8e-05 29_[+5]_43 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGTTTT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTGTTTT width=8 seqs=7 chr1:204476721-204476801 ( 10) TTTGTTTT 1 chr12:92073294-92073374 ( 13) TTTGTTTT 1 chr18:9870318-9870398 ( 4) TTTGTTTT 1 chr18:3447837-3447917 ( 44) TTTGTTTT 1 chr11:65189368-65189448 ( 22) TTGGTTTT 1 chr6:37391859-37391939 ( 22) TTGGTTTT 1 chr20:44601288-44601368 ( 30) TGTGTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGTTTT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.5704 E= 1.6e+004 -945 -945 -945 214 -945 -945 -90 191 -945 -945 10 165 -945 -945 190 -945 -945 -945 -945 214 -945 -945 -945 214 -945 -945 -945 214 -945 -945 -945 214 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGTTTT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.6e+004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.142857 0.857143 0.000000 0.000000 0.285714 0.714286 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGTTTT MEME-5 regular expression -------------------------------------------------------------------------------- TT[TG]GTTTT -------------------------------------------------------------------------------- Time 20.13 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:106209010-106209090 2.46e-01 80 chr4:85220055-85220135 9.93e-01 80 chr1:110438953-110439033 6.86e-01 80 chr1:10033-10113 1.00e+00 80 chr3:50126332-50126412 9.94e-03 52_[+1(2.56e-05)]_20 chr14:102177762-10217784 7.54e-01 80 chr22:41487804-41487884 9.55e-01 80 chr16:27210115-27210195 2.43e-01 80 chr19:2059211-2059291 1.08e-03 52_[+3(2.67e-05)]_20 chr12:125348765-12534884 1.24e-02 80 chr4:56708152-56708232 4.69e-01 80 chr9:108545222-108545302 4.04e-02 66_[+1(5.08e-05)]_6 chr2:156087846-156087926 4.43e-01 80 chr19:52050670-52050750 8.50e-01 80 chr15:95398697-95398777 1.48e-02 1_[+2(1.61e-05)]_71 chr14:102180239-10218031 4.32e-02 80 chr6:30684679-30684759 3.41e-01 80 chr16:87812127-87812207 3.62e-01 80 chr16:15671031-15671111 9.41e-02 80 chr2:68906814-68906894 8.38e-01 80 chr2:108363566-108363646 5.04e-01 80 chr2:160471500-160471580 2.20e-02 4_[+2(1.61e-05)]_68 chr4:129438738-129438818 7.32e-02 80 chr14:35856210-35856290 4.76e-04 4_[+2(4.71e-05)]_5_[+1(2.56e-05)]_\ 55 chr1:27114141-27114221 9.99e-01 80 chr19:3608156-3608236 9.53e-01 80 chr6:147198106-147198186 7.96e-01 80 chr9:103289683-103289763 5.09e-01 80 chr3:60263214-60263294 3.08e-05 8_[+3(3.63e-05)]_64 chr2:85765652-85765732 7.73e-01 80 chr11:122933417-12293349 1.06e-01 80 chr2:206950917-206950997 9.91e-01 80 chr6:32938176-32938256 9.63e-02 80 chr5:103415732-103415812 2.79e-01 80 chr20:22392968-22393048 1.40e-01 80 chr19:50877758-50877838 2.77e-05 39_[+4(8.17e-06)]_33 chr4:10183403-10183483 5.22e-01 80 chr7:30155361-30155441 1.00e+00 80 chr6:43894972-43895052 2.12e-01 80 chr6:89130698-89130778 1.34e-01 27_[+2(1.61e-05)]_14_[+2(3.07e-05)]_\ 14_[+2(1.61e-05)]_1 chr5:180473040-180473120 8.78e-01 80 chr1:185862139-185862219 1.51e-01 80 chr6:12011155-12011235 7.93e-02 80 chr17:27279040-27279120 8.75e-03 40_[+1(6.35e-05)]_32 chr3:15228267-15228347 6.88e-01 80 chr18:3447837-3447917 2.47e-04 43_[+5(8.29e-06)]_29 chr14:76724285-76724365 1.81e-02 65_[+1(5.08e-05)]_7 chr10:32635696-32635776 4.76e-01 80 chr20:45985429-45985509 6.70e-01 80 chr6:37150825-37150905 7.21e-02 80 chr11:77762067-77762147 7.59e-01 80 chr12:53773169-53773249 3.73e-01 80 chr9:11064956-11065036 9.49e-04 43_[+1(5.08e-05)]_29 chr3:178577821-178577901 5.01e-01 80 chr6:26033879-26033959 9.56e-01 80 chr15:51329771-51329851 1.50e-02 59_[+1(2.56e-05)]_13 chr3:6549498-6549578 5.94e-08 3_[+3(8.29e-06)]_32_[+2(7.96e-05)]_\ 29 chr12:6722490-6722570 7.90e-01 80 chr13:53226548-53226628 2.84e-01 55_[+2(6.19e-05)]_17 chr3:195870883-195870963 9.95e-01 80 chr21:40824153-40824233 3.32e-02 80 chr16:8159709-8159789 4.41e-03 8_[+2(4.71e-05)]_5_[+1(2.56e-05)]_\ 51 chr2:152561233-152561313 9.30e-01 80 chr6:30582893-30582973 2.06e-02 24_[+1(2.56e-05)]_48 chr12:57848562-57848642 2.90e-01 80 chr13:50018038-50018118 4.11e-04 20_[+5(9.89e-05)]_32_[+2(1.61e-05)]_\ 12 chr10:74033164-74033244 9.99e-01 80 chr18:976960-977040 3.35e-04 6_[+3(1.79e-05)]_66 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because requested number of motifs (5) found. ******************************************************************************** CPU: c22n09.farnam.hpc.yale.internal ********************************************************************************