******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/NFE2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr5:176855152-176855232 1.0000 80 chr3:36885323-36885403 1.0000 80 chr4:52762127-52762207 1.0000 80 chr11:124044858-12404493 1.0000 80 chr12:123460583-12346066 1.0000 80 chr2:122385235-122385315 1.0000 80 chr4:39027541-39027621 1.0000 80 chr6:157638825-157638905 1.0000 80 chr3:57777168-57777248 1.0000 80 chr3:177391320-177391400 1.0000 80 chr5:5558356-5558436 1.0000 80 chr6:160931397-160931477 1.0000 80 chr2:69062023-69062103 1.0000 80 chr10:22331641-22331721 1.0000 80 chr6:52590773-52590853 1.0000 80 chr4:100644821-100644901 1.0000 80 chr1:39424795-39424875 1.0000 80 chr4:129491697-129491777 1.0000 80 chr11:60666948-60667028 1.0000 80 chr4:48901297-48901377 1.0000 80 chr5:56108095-56108175 1.0000 80 chr16:20314505-20314585 1.0000 80 chr7:108129652-108129732 1.0000 80 chr2:214116437-214116517 1.0000 80 chr9:131930479-131930559 1.0000 80 chr2:16817829-16817909 1.0000 80 chr3:40408450-40408530 1.0000 80 chr10:75692234-75692314 1.0000 80 chr1:165806129-165806209 1.0000 80 chr7:65746949-65747029 1.0000 80 chr1:28798135-28798215 1.0000 80 chrX:153713024-153713104 1.0000 80 chr4:123333879-123333959 1.0000 80 chr19:41030342-41030422 1.0000 80 chr16:75023053-75023133 1.0000 80 chr1:175124145-175124225 1.0000 80 chr2:86444494-86444574 1.0000 80 chr11:74517429-74517509 1.0000 80 chr7:51030750-51030830 1.0000 80 chrX:154975585-154975665 1.0000 80 chr12:114050033-11405011 1.0000 80 chr4:145934166-145934246 1.0000 80 chr15:63712807-63712887 1.0000 80 chr1:212948113-212948193 1.0000 80 chr20:40272361-40272441 1.0000 80 chr7:140059372-140059452 1.0000 80 chr16:53259024-53259104 1.0000 80 chr11:6749649-6749729 1.0000 80 chr7:4672789-4672869 1.0000 80 chr8:100694863-100694943 1.0000 80 chr10:7998621-7998701 1.0000 80 chr10:94404400-94404480 1.0000 80 chr16:67275249-67275329 1.0000 80 chr20:30148052-30148132 1.0000 80 chr7:23102244-23102324 1.0000 80 chr2:26685514-26685594 1.0000 80 chr1:92056891-92056971 1.0000 80 chr6:31526954-31527034 1.0000 80 chr15:50528177-50528257 1.0000 80 chr7:39504743-39504823 1.0000 80 chr11:28365021-28365101 1.0000 80 chr15:91229482-91229562 1.0000 80 chr7:112063098-112063178 1.0000 80 chr1:91748406-91748486 1.0000 80 chr3:169647988-169648068 1.0000 80 chr5:67700981-67701061 1.0000 80 chr7:158411095-158411175 1.0000 80 chr1:222414023-222414103 1.0000 80 chr7:115872072-115872152 1.0000 80 chr8:61186921-61187001 1.0000 80 chr1:90406839-90406919 1.0000 80 chr8:102388426-102388506 1.0000 80 chr8:102150703-102150783 1.0000 80 chr16:89086839-89086919 1.0000 80 chr12:92472119-92472199 1.0000 80 chr17:44026518-44026598 1.0000 80 chr4:25921461-25921541 1.0000 80 chr15:74935261-74935341 1.0000 80 chr6:16342696-16342776 1.0000 80 chr7:4778508-4778588 1.0000 80 chr12:108876801-10887688 1.0000 80 chr19:10923890-10923970 1.0000 80 chr17:27990304-27990384 1.0000 80 chr21:43377696-43377776 1.0000 80 chr16:3747068-3747148 1.0000 80 chr1:24247248-24247328 1.0000 80 chr4:99715874-99715954 1.0000 80 chr21:36834158-36834238 1.0000 80 chr9:130844608-130844688 1.0000 80 chr7:73189438-73189518 1.0000 80 chr16:81175138-81175218 1.0000 80 chr7:5795419-5795499 1.0000 80 chr12:51009974-51010054 1.0000 80 chr1:27472585-27472665 1.0000 80 chr8:10676542-10676622 1.0000 80 chr4:38468136-38468216 1.0000 80 chr12:98793466-98793546 1.0000 80 chr1:194627394-194627474 1.0000 80 chr4:74465141-74465221 1.0000 80 chr3:170224475-170224555 1.0000 80 chr11:74811454-74811534 1.0000 80 chr6:41934891-41934971 1.0000 80 chr10:61473371-61473451 1.0000 80 chr7:92676076-92676156 1.0000 80 chr6:43278540-43278620 1.0000 80 chr2:167249673-167249753 1.0000 80 chr10:5121157-5121237 1.0000 80 chr3:120361484-120361564 1.0000 80 chr12:125399826-12539990 1.0000 80 chr20:345696-345776 1.0000 80 chr3:121293467-121293547 1.0000 80 chr4:89099577-89099657 1.0000 80 chr1:67657533-67657613 1.0000 80 chr15:98619815-98619895 1.0000 80 chr7:87000137-87000217 1.0000 80 chr2:183924425-183924505 1.0000 80 chr3:23982327-23982407 1.0000 80 chr10:81077553-81077633 1.0000 80 chr10:76868968-76869048 1.0000 80 chr7:129483968-129484048 1.0000 80 chr1:51953472-51953552 1.0000 80 chr8:101894367-101894447 1.0000 80 chr7:106007684-106007764 1.0000 80 chr2:169346683-169346763 1.0000 80 chr7:158301143-158301223 1.0000 80 chr12:1609498-1609578 1.0000 80 chr5:141768384-141768464 1.0000 80 chr15:49150745-49150825 1.0000 80 chr5:68342340-68342420 1.0000 80 chr9:130698108-130698188 1.0000 80 chr8:129077941-129078021 1.0000 80 chr11:66603350-66603430 1.0000 80 chr8:141353601-141353681 1.0000 80 chr22:37055918-37055998 1.0000 80 chr16:89392580-89392660 1.0000 80 chr3:151555033-151555113 1.0000 80 chr12:122331124-12233120 1.0000 80 chr1:46813875-46813955 1.0000 80 chr3:14320303-14320383 1.0000 80 chr5:149045883-149045963 1.0000 80 chr7:139945667-139945747 1.0000 80 chr3:45224930-45225010 1.0000 80 chr2:64871600-64871680 1.0000 80 chrX:15511387-15511467 1.0000 80 chr15:68174862-68174942 1.0000 80 chr2:8369862-8369942 1.0000 80 chr7:107744568-107744648 1.0000 80 chr2:29353306-29353386 1.0000 80 chr5:158521987-158522067 1.0000 80 chr22:30195316-30195396 1.0000 80 chr22:21961966-21962046 1.0000 80 chr15:51169309-51169389 1.0000 80 chr12:127568056-12756813 1.0000 80 chr6:24755650-24755730 1.0000 80 chr8:54680924-54681004 1.0000 80 chr4:129392888-129392968 1.0000 80 chr15:43703194-43703274 1.0000 80 chr6:146070885-146070965 1.0000 80 chr4:1678514-1678594 1.0000 80 chr2:243040804-243040884 1.0000 80 chr15:44192275-44192355 1.0000 80 chr11:59524501-59524581 1.0000 80 chr21:38336855-38336935 1.0000 80 chr3:41137355-41137435 1.0000 80 chr16:66009152-66009232 1.0000 80 chr19:30179335-30179415 1.0000 80 chr22:41908941-41909021 1.0000 80 chr21:40691969-40692049 1.0000 80 chrX:51230673-51230753 1.0000 80 chr4:7033825-7033905 1.0000 80 chr6:160410336-160410416 1.0000 80 chr6:125524731-125524811 1.0000 80 chr9:116217698-116217778 1.0000 80 chr1:90372332-90372412 1.0000 80 chr6:91212679-91212759 1.0000 80 chr2:69817596-69817676 1.0000 80 chr3:185960407-185960487 1.0000 80 chr12:48169413-48169493 1.0000 80 chr21:35134159-35134239 1.0000 80 chr3:25634162-25634242 1.0000 80 chr2:101130211-101130291 1.0000 80 chr11:47082524-47082604 1.0000 80 chr6:17703720-17703800 1.0000 80 chr5:95109619-95109699 1.0000 80 chr6:7255361-7255441 1.0000 80 chr11:95658338-95658418 1.0000 80 chr9:128008816-128008896 1.0000 80 chr3:196066788-196066868 1.0000 80 chr7:27648831-27648911 1.0000 80 chr8:146000702-146000782 1.0000 80 chr10:3807419-3807499 1.0000 80 chr18:1050179-1050259 1.0000 80 chr9:38381100-38381180 1.0000 80 chr5:108527133-108527213 1.0000 80 chr8:80673290-80673370 1.0000 80 chr17:20088423-20088503 1.0000 80 chr15:58785330-58785410 1.0000 80 chr1:166644583-166644663 1.0000 80 chr10:93861185-93861265 1.0000 80 chr11:66935717-66935797 1.0000 80 chr2:19986329-19986409 1.0000 80 chr3:43814880-43814960 1.0000 80 chr6:56755530-56755610 1.0000 80 chr1:179187240-179187320 1.0000 80 chr9:131545897-131545977 1.0000 80 chr4:84469767-84469847 1.0000 80 chr2:106731877-106731957 1.0000 80 chr1:244505099-244505179 1.0000 80 chr7:22357413-22357493 1.0000 80 chr1:26564186-26564266 1.0000 80 chr3:39328875-39328955 1.0000 80 chr10:62423156-62423236 1.0000 80 chr8:97833179-97833259 1.0000 80 chr5:173205847-173205927 1.0000 80 chr7:134133566-134133646 1.0000 80 chr3:185141120-185141200 1.0000 80 chr4:15151592-15151672 1.0000 80 chr1:234569483-234569563 1.0000 80 chr1:29045550-29045630 1.0000 80 chr8:108508207-108508287 1.0000 80 chr7:76018454-76018534 1.0000 80 chr2:157287699-157287779 1.0000 80 chr19:30181987-30182067 1.0000 80 chr15:96935720-96935800 1.0000 80 chr7:43612250-43612330 1.0000 80 chr1:100515847-100515927 1.0000 80 chr1:243585210-243585290 1.0000 80 chr16:69760879-69760959 1.0000 80 chr1:167389906-167389986 1.0000 80 chr10:12264048-12264128 1.0000 80 chr1:93498710-93498790 1.0000 80 chr1:76138659-76138739 1.0000 80 chr6:43931155-43931235 1.0000 80 chr2:121621361-121621441 1.0000 80 chr14:77385282-77385362 1.0000 80 chr2:68598905-68598985 1.0000 80 chr16:22043175-22043255 1.0000 80 chr17:79881443-79881523 1.0000 80 chr1:182555666-182555746 1.0000 80 chr5:141977828-141977908 1.0000 80 chr5:77822961-77823041 1.0000 80 chr17:66756079-66756159 1.0000 80 chr12:23569190-23569270 1.0000 80 chr1:92021898-92021978 1.0000 80 chr17:53167740-53167820 1.0000 80 chr5:71800061-71800141 1.0000 80 chr3:34098490-34098570 1.0000 80 chr13:114988273-11498835 1.0000 80 chr1:93388045-93388125 1.0000 80 chr15:101677975-10167805 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_NFE2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/NFE2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.252 C 0.243 G 0.242 T 0.263 Background letter frequencies (from file dataset with add-one prior applied): A 0.252 C 0.243 G 0.242 T 0.263 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF MTGASTCA MEME-1 width = 8 sites = 224 llr = 1802 E-value = 7.5e-305 ******************************************************************************** -------------------------------------------------------------------------------- Motif MTGASTCA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 3::a:::a pos.-specific C 5:::5:a: probability G 2:a:4::: matrix T :a::1a:: bits 2.0 1.8 ** * 1.6 *** *** 1.4 *** *** Relative 1.2 *** *** Entropy 1.0 *** *** (11.6 bits) 0.8 *** *** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTGACTCA consensus A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTGASTCA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:23569190-23569270 44 1.53e-05 TGGAGGAATG CTGACTCA CTGCAAGCAT chr17:79881443-79881523 49 1.53e-05 GCGAGTCACG CTGACTCA GCACATTGCC chr2:68598905-68598985 53 1.53e-05 catcaaattg ctgactca tagagctcct chr1:167389906-167389986 39 1.53e-05 AGTAGTATTG CTGACTCA CTGTATCACT chr7:43612250-43612330 37 1.53e-05 ATCCTGAATC CTGACTCA TGGCTCATGA chr6:56755530-56755610 42 1.53e-05 GTCACGCTTT CTGACTCA TCTCCTTTGC chr8:146000702-146000782 34 1.53e-05 tatgaaaatg ctgactca gtgactctgc chr11:95658338-95658418 34 1.53e-05 TTCCAAAATG CTGACTCA CTGTCAGCTA chr21:35134159-35134239 29 1.53e-05 TGAGTATTTG CTGACTCA TCTGTATGTC chr12:48169413-48169493 16 1.53e-05 CACCCTACTT CTGACTCA GCGTTTTATA chr4:7033825-7033905 21 1.53e-05 CCTTTAAATG CTGACTCA CCTCCTCTCG chr3:45224930-45225010 45 1.53e-05 AATGAATGTG CTGACTCA TGCACTTCTC chr3:14320303-14320383 41 1.53e-05 ctcagaaatg ctgactca ttaggtctgg chr22:37055918-37055998 38 1.53e-05 CTAGAAGAGC CTGACTCA TTCGCCTTGG chr3:121293467-121293547 39 1.53e-05 taaagcttcg ctgactca ttcgctgctc chr7:73189438-73189518 23 1.53e-05 gattacattg ctgactca tgttaccata chr7:115872072-115872152 41 1.53e-05 GTAAAAACTG CTGACTCA TGGAGGTTCT chr3:169647988-169648068 22 1.53e-05 ccaaactctg ctgactca ttatctctca chr1:92056891-92056971 34 1.53e-05 GAAGAAACTG CTGACTCA TGCAAAAGTC chr2:26685514-26685594 51 1.53e-05 CCTGGAACAG CTGACTCA TGGCCTCAGG chr10:94404400-94404480 29 1.53e-05 AACATCTTTG CTGACTCA CTTGGTTTAC chr15:63712807-63712887 52 1.53e-05 ccattttccg ctgactca tgctgtgctc chr16:20314505-20314585 25 1.53e-05 aTTTGAAGTG CTGACTCA TCTGTAGGCA chr6:52590773-52590853 42 1.53e-05 TAAATTTGTG CTGACTCA CAGCTGCCTC chr3:34098490-34098570 20 3.04e-05 agtgaaattg ctgagtca cttagtaagt chr5:71800061-71800141 28 3.04e-05 TCCTCTTTAG CTGAGTCA TGGTACAACC chr17:53167740-53167820 45 3.04e-05 ACTCAGACTG CTGAGTCA TCCTTAAACT chr17:66756079-66756159 19 3.04e-05 TTTCCCATTG CTGAGTCA CTGGGCTGTC chr5:141977828-141977908 44 3.04e-05 GAGTCACAGG CTGAGTCA GCAGGCCAGA chr16:22043175-22043255 31 3.04e-05 aatgaaattg ctgagtca tacagtcatt chr2:121621361-121621441 25 3.04e-05 CACAGATAAG CTGAGTCA CAGGAGGGCG chr6:43931155-43931235 54 3.04e-05 gtcaagactg ctgagtca tgatcatgac chr16:69760879-69760959 32 3.04e-05 TCAGATTCTG CTGAGTCA CTGTGACTGC chr19:30181987-30182067 21 3.04e-05 caccttcttg ctgagtca tcacatggag chr2:157287699-157287779 32 3.04e-05 ATTCCAAATG CTGAGTCA TTCTTATGGG chr1:29045550-29045630 23 3.04e-05 CTGGAGAACG CTGAGTCA TGCATGGGCT chr3:185141120-185141200 27 3.04e-05 GAAGTAACTG CTGAGTCA CTGGCTAGGT chr3:39328875-39328955 44 3.04e-05 GCAAGCAGTG CTGAGTCA TTTCACTCGG chr1:26564186-26564266 26 3.04e-05 tgtggaattg ctgagtca tagggtaact chr1:244505099-244505179 33 3.04e-05 CCTGCAAGTG CTGAGTCA CCCAGTCTGG chr9:131545897-131545977 33 3.04e-05 aatggaagtg ctgagtca tagggtaatt chr2:19986329-19986409 65 3.04e-05 CTCCCAAGGA CTGAGTCA TGTTCCTC chr8:80673290-80673370 38 3.04e-05 CTTCAGCGTG CTGAGTCA CAAGCGAGCT chr5:108527133-108527213 32 3.04e-05 CTGGTTAGTG CTGAGTCA TCGCAAGACT chr3:185960407-185960487 35 3.04e-05 CATGCACTCG CTGAGTCA TGCCAACCCT chr1:90372332-90372412 44 3.04e-05 CTCTAACCTG CTGAGTCA TCTCAGCTCA chr9:116217698-116217778 26 3.04e-05 TGCGAGGGTG CTGAGTCA TTCTAGCAGA chr6:160410336-160410416 39 3.04e-05 TGGTTTTGTG CTGAGTCA TTGCCTTGGT chr22:41908941-41909021 31 3.04e-05 TCAGGATGTG CTGAGTCA GGCTGTAATC chr19:30179335-30179415 26 3.04e-05 ggtggaattg ctgagtca tgcagtcact chr15:43703194-43703274 50 3.04e-05 gattctactg ctgagtca ctgccaacac chr4:129392888-129392968 43 3.04e-05 GAAGGCTGTG CTGAGTCA CTTACACTGT chr6:24755650-24755730 34 3.04e-05 gtccaaactg ctgagtca cctatcacat chr22:21961966-21962046 21 3.04e-05 AGACTCTTTG CTGAGTCA TCTCTCAGGC chr2:29353306-29353386 26 3.04e-05 CTGCAATGTG CTGAGTCA TGCTGACCAA chr5:149045883-149045963 41 3.04e-05 gaccaaacag ctgagtca cacacagtgg chr11:66603350-66603430 43 3.04e-05 agtagaattg ctgagtca tatgataaca chr8:129077941-129078021 36 3.04e-05 GGAAGAAGTG CTGAGTCA TGTCACTTCA chr8:101894367-101894447 38 3.04e-05 cctaaacttg ctgagtca tgcaggctca chr7:129483968-129484048 28 3.04e-05 TACAGAAGTG CTGAGTCA CACCTGTAAA chr10:81077553-81077633 47 3.04e-05 tgtgtgtCTG CTGAGTCA TGATGTTAAT chr2:183924425-183924505 37 3.04e-05 TTTCATTTTG CTGAGTCA CCATGTGGAA chr7:87000137-87000217 36 3.04e-05 agagaatttg ctgagtca taggatatgt chr10:61473371-61473451 49 3.04e-05 aagttacttg ctgagtca cttgctgggt chr6:41934891-41934971 20 3.04e-05 GGTTCCTTTG CTGAGTCA TGGAGAACGG chr11:74811454-74811534 37 3.04e-05 TTTGAGGATG CTGAGTCA CAGTGATGAC chr3:170224475-170224555 47 3.04e-05 TCTAATTCTG CTGAGTCA CTTGCAGCCT chr12:98793466-98793546 44 3.04e-05 CCTCTCTCTG CTGAGTCA TCCTTCCTTC chr7:5795419-5795499 29 3.04e-05 agtggaaatg ctgagtca tggggtaagc chr16:81175138-81175218 26 3.04e-05 TCAGCTTGTG CTGAGTCA CAGAGCAAAC chr9:130844608-130844688 37 3.04e-05 CCAATTGTTG CTGAGTCA CATCAGGTGG chr21:36834158-36834238 47 3.04e-05 ATCATATTTG CTGAGTCA CTCAAGTACT chr4:99715874-99715954 44 3.04e-05 TGGGCCACTG CTGAGTCA CCCTCCCACT chr21:43377696-43377776 34 3.04e-05 ATGATCTCTG CTGAGTCA CCCAGTCTTG chr19:10923890-10923970 34 3.04e-05 GTGTTGAGTG CTGAGTCA TGGGAGGGAC chr7:4778508-4778588 43 3.04e-05 ATTTGTAATG CTGAGTCA CTTCCTTTGA chr17:44026518-44026598 32 3.04e-05 GGCGATTCTG CTGAGTCA CCGCGGGCGC chr16:89086839-89086919 44 3.04e-05 CCCCACATTG CTGAGTCA TCTTGCTACC chr8:102388426-102388506 27 3.04e-05 TGTGATTCTG CTGAGTCA TTGTTGGGAA chr6:31526954-31527034 39 3.04e-05 TTTCCCTTTG CTGAGTCA CTGAATGAGC chr10:7998621-7998701 19 3.04e-05 TGAATTTGTG CTGAGTCA TTCATGATTT chr8:100694863-100694943 48 3.04e-05 ggccactgtg ctgagtca tacctgaagc chr7:4672789-4672869 41 3.04e-05 tgtagacctg ctgagtca cagccttggt chr20:40272361-40272441 32 3.04e-05 GGCAAATCAG CTGAGTCA CTCTCGGCCA chr7:51030750-51030830 36 3.04e-05 CTGGGCTGTG CTGAGTCA TCTCCGCAGG chr4:123333879-123333959 40 3.04e-05 GGGAGCATTG CTGAGTCA TTTTATACAG chrX:153713024-153713104 37 3.04e-05 cactgccttg ctgagtca ccCATCAGCC chr1:28798135-28798215 48 3.04e-05 AACACCTTTG CTGAGTCA TTGTGGGCTT chr7:65746949-65747029 33 3.04e-05 GGAGAACTTG CTGAGTCA CAGATATCTT chr2:16817829-16817909 31 3.04e-05 gtgtccagtg ctgagtca cctatctatt chr9:131930479-131930559 33 3.04e-05 ggctgaattg ctgagtca ccgtatggag chr2:214116437-214116517 47 3.04e-05 TAACAATGTG CTGAGTCA GAGTGGGCTC chr6:160931397-160931477 25 3.04e-05 TGAGTATTTG CTGAGTCA CTATCTGCAT chr1:76138659-76138739 35 4.63e-05 ggcttcaggt atgactca gcacattcct chr1:93498710-93498790 43 4.63e-05 GTTGAGCAAA ATGACTCA GCAATTCACT chr15:96935720-96935800 33 4.63e-05 gaaagcaaca atgactca gcacttcaca chr4:15151592-15151672 45 4.63e-05 GCCAGGCAGG ATGACTCA GCAGAAAAGA chr1:166644583-166644663 36 4.63e-05 TTCTTGGAGG ATGACTCA GCAATCCTGG chr15:58785330-58785410 39 4.63e-05 CTCATCAGTG ATGACTCA GCAAAATCAA chr18:1050179-1050259 23 4.63e-05 GGGTGTGTGC ATGACTCA GTAACTGTTG chr3:196066788-196066868 50 4.63e-05 tggcacaatc atgactca ctgcagcctt chr5:95109619-95109699 31 4.63e-05 AAATAAGCAG ATGACTCA GCAAATCACC chr6:17703720-17703800 45 4.63e-05 TTGCTTCATG ATGACTCA GCAGCTTCTG chr2:101130211-101130291 24 4.63e-05 tgaaggctgg atgactca gcaagtctag chr16:66009152-66009232 38 4.63e-05 attaccctgc atgactca gcattaccct chr6:146070885-146070965 44 4.63e-05 GCCTTTGAGT ATGACTCA GCTATTTTCT chr8:54680924-54681004 45 4.63e-05 gagttaacat atgactca gcaatttcac chr2:8369862-8369942 40 4.63e-05 tgagaacagc atgactca gcaaagctga chr3:151555033-151555113 45 4.63e-05 ATATGGTGTT ATGACTCA GCAAACCTGC chr5:141768384-141768464 46 4.63e-05 gggtggggga atgactca gctgaattat chr20:345696-345776 54 4.63e-05 TCTGTCCTGG ATGACTCA GCAAGCCTTG chr6:43278540-43278620 40 4.63e-05 gagttaccat atgactca gcaattccac chr1:194627394-194627474 42 4.63e-05 GACTGTGGTT ATGACTCA GCATACCACA chr1:27472585-27472665 42 4.63e-05 CAGGCGATGG ATGACTCA GGAATAACCC chr6:16342696-16342776 32 4.63e-05 gaattaccac atgactca gcaattccac chr7:112063098-112063178 37 4.63e-05 CGGGGGCAGG ATGACTCA GCACTTCCTA chr11:28365021-28365101 29 4.63e-05 ACTGTGGTGA ATGACTCA GCACTGTTTG chr1:212948113-212948193 30 4.63e-05 gagttgccac atgactca gcagttccat chr11:74517429-74517509 49 4.63e-05 tgcgtacctt atgactca gcagtttctg chr10:75692234-75692314 45 4.63e-05 CCGATGGGAA ATGACTCA GCATTGAAGT chr3:40408450-40408530 36 4.63e-05 TAGAACATTC ATGACTCA GCACATCTAT chr1:39424795-39424875 35 4.63e-05 tccaccatga atgactca gcaagaaggc chr14:77385282-77385362 30 6.20e-05 TGGGGCAGCG ATGAGTCA GCAGAGGCGT chr10:12264048-12264128 48 6.20e-05 GGCTGCTTAG ATGAGTCA GCACATGCAT chr1:179187240-179187320 38 6.20e-05 CTGCTCAAGA ATGAGTCA GCAGAACTGT chr10:93861185-93861265 33 6.20e-05 AATAGCCAGG ATGAGTCA GCTAAACCTA chr12:127568056-12756813 33 6.20e-05 ttcactgctt atgagtca gcaaatatcg chr5:56108095-56108175 65 6.20e-05 ctgttactgg atgagtca gctaaatg chr7:76018454-76018534 38 7.72e-05 gcctgacact gtgactcA GCATTTCCAG chr5:173205847-173205927 22 7.72e-05 ctacgcagaa gtgactca gcataaaggt chr4:84469767-84469847 35 7.72e-05 TGATGCTGGC GTGACTCA GCATTGTTGG chr3:25634162-25634242 47 7.72e-05 CTCTGGCAGA GTGACTCA GGctttttgc chr15:44192275-44192355 41 7.72e-05 AGGTCCTAGA GTGACTCA GCAGTTCAGG chrX:15511387-15511467 34 7.72e-05 TAGCCTCACC GTGACTCA GCGCTTCGCG chr16:89392580-89392660 38 7.72e-05 CAGATGGAGG GTGACTCA GCAGATTTCC chr5:68342340-68342420 44 7.72e-05 CACCATCATG GTGACTCA GCAACTTTCT chr7:158301143-158301223 36 7.72e-05 GGGTGTGGCC GTGACTCA GCAACTGAAA chr10:76868968-76869048 50 7.72e-05 ACAGAAGCAA GTGACTCA GCAAGTCACA chr4:89099577-89099657 46 7.72e-05 ggcttaagct gtgactca gcacattcct chr4:74465141-74465221 38 7.72e-05 GTGCTGGTGA GTGACTCA GCGCTTTCTT chr4:38468136-38468216 46 7.72e-05 TAGAAGATAA GTGACTCA GCACCTGCCC chr8:10676542-10676622 42 7.72e-05 TGCCTATCCC GTGACTCA GCATAGTCCG chr4:25921461-25921541 32 7.72e-05 CCTGGTGCCT GTGACTCA GCAAATCAGT chr12:92472119-92472199 24 7.72e-05 TAGTCTCTAT GTGACTCA GCAACTTTTT chr7:23102244-23102324 37 7.72e-05 CATAGGCGCA GTGACTCA GCACTGCAGC chr16:67275249-67275329 42 7.72e-05 TTCCCACACA GTGACTCA GCAGCCTACC chr16:53259024-53259104 35 7.72e-05 CACTGTAGCA GTGACTCA GCCATTTTTG chr4:48901297-48901377 39 7.72e-05 GAAAGAGGAA GTGACTCA GCTGAAAATG chr4:100644821-100644901 25 7.72e-05 GCCAAGGCCA GTGACTCA GCAGAGCGTG chr10:22331641-22331721 36 7.72e-05 CAGGGTGGTG GTGACTCA GCGAAATCCA chr5:5558356-5558436 50 7.72e-05 CATGAAGACT GTGACTCA GCAGAGATCA chr4:52762127-52762207 58 7.72e-05 TCTGGACAGG GTGACTCA GCAGCCTGTT chr10:62423156-62423236 43 9.23e-05 TTAAACCACA GTGAGTCA GCTCTGTCCA chr7:27648831-27648911 32 9.23e-05 ATCTTGGGCA GTGAGTCA CCAGTCTTCT chr12:108876801-10887688 54 9.23e-05 tgagtggtgg gtgagtca gcattacctc chr5:67700981-67701061 27 9.23e-05 gatctgctgg gtgagtca gcaagttaaa chr11:124044858-12404493 38 9.23e-05 AGAGGACCCA GTGAGTCA GCAACAAACA chr2:106731877-106731957 27 1.09e-04 AAGCTAACTG CTGATTCA TCCTAGGCAT chr11:47082524-47082604 20 1.09e-04 acaggatttg ctgattca ttgtgtgagg chr2:169346683-169346763 47 1.09e-04 aggaattgtg ctgattca tgttcagaat chr1:67657533-67657613 59 1.09e-04 gtctcttttg ctgattca tcttcatttc chr7:39504743-39504823 43 1.09e-04 GTACTAAGTG CTGATTCA CTATGAAACC chr1:92021898-92021978 51 1.25e-04 TGCCCCATTG CTGAATCA TGCTGATGAG chr7:134133566-134133646 42 1.25e-04 CTGTGTCATG CTGAATCA TAACTCAGGA chr7:140059372-140059452 23 1.25e-04 TTGTGATCTG CTGAATCA TTTAGCAGCT chr8:108508207-108508287 50 1.42e-04 ATTACTTGGC ATGATTCA GCAGGCAATG chr9:38381100-38381180 47 1.42e-04 GAAGAAGATA ATGATTCA GCAGCTTTGC chr4:145934166-145934246 43 1.42e-04 gtcttctgct atgattca gcatttcctg chr2:86444494-86444574 51 1.42e-04 ATTATCTTAA ATGATTCA GCAGAAAGAG chr4:39027541-39027621 46 1.42e-04 CCTTAACAGT ATGATTCA GCAAGtttgc chr2:69817596-69817676 44 1.73e-04 CAGGGCAGGA GTGATTCA GCATAAGCCA chr3:41137355-41137435 15 1.73e-04 TATATTCATT GTGATTCA GCAATTATTT chr8:61186921-61187001 32 1.73e-04 aaggtagtga gtgattca gcaaaaagag chr1:243585210-243585290 27 2.04e-04 ACGCGCTTAG ATGAATCA GCAGTAAAAC chr11:66935717-66935797 29 2.04e-04 GTTATGCTGA ATGAATCA GCATTTTTCT chr3:120361484-120361564 34 2.04e-04 gcaagtcact atgaatca gctccagccc chr8:97833179-97833259 41 2.36e-04 tggtgagatg ctgtctca ttgtggtttt chr12:114050033-11405011 25 2.36e-04 ACGAAAAACG CTGTCTCA TTCTCCTGCA chr7:22357413-22357493 33 2.83e-04 AACACTTTTG CTGTGTCA TCCCAGGTGG chr3:23982327-23982407 40 2.83e-04 ctgcaatttg ctgtgtca cagcaaactg chr1:222414023-222414103 62 2.83e-04 AATTTTCTAG CTGTGTCA GGGCCTGCCT chr1:165806129-165806209 29 2.83e-04 ggcctttttg ctgtgtca tggtcatccc chr15:74935261-74935341 43 3.29e-04 GGCACTGTTG GTGAATCA GCATATTTTT chr15:91229482-91229562 62 3.29e-04 aattggattg ctgagtct gagtgatggg chr6:125524731-125524811 38 3.59e-04 TGAAATGCTA ATGACACA GCAGAAACCC chr9:130698108-130698188 16 3.59e-04 AGGCCAGGGC ATGACACA GCAGAGCCAC chr2:167249673-167249753 54 3.59e-04 tagttttaca atgacaca gcagtttcca chr15:50528177-50528257 40 3.59e-04 TATTTCTTGG ATGACACA GCAAAAATGT chr19:41030342-41030422 49 3.59e-04 tccagcctgg atgacaca gcaacattct chr15:68174862-68174942 18 3.74e-04 ACTTAAGTAG ATGAGACA CAAATCTGCA chr1:93388045-93388125 43 4.05e-04 CACATTTCTG CAGACTCA TCCATGGACA chr1:175124145-175124225 12 4.05e-04 GAAAAAGATG TTGACTCA CGCTTTCTCC chr15:101677975-10167805 34 5.00e-04 CGCAGAATTG CAGAGTCA CCAGCTGCTG chr5:77822961-77823041 69 5.00e-04 TGTTCCTCTC CTGCCTCA GCTG chr1:234569483-234569563 67 5.00e-04 catttcacag ttgagtca tctgtc chr6:91212679-91212759 45 5.00e-04 GTTTGAATGA ATGACTAA GCAAAGTTTA chr11:59524501-59524581 23 5.00e-04 AGTGGCCTCT CTGCCTCA GGCTTGTGCT chr15:51169309-51169389 54 5.00e-04 CCAATTCACC CTGCCTCA TCGCAGATGT chr22:30195316-30195396 40 5.00e-04 TGCAATGTGT ATGACTAA GCAGTTTGCA chr1:91748406-91748486 48 5.00e-04 GTGGTGCACA ATGACTAA GCACATTTGC chr11:60666948-60667028 16 5.00e-04 TATTAAAGTG CTAACTCA TACAGCATCA chr2:122385235-122385315 47 5.00e-04 GGAAAACGTG CAGAGTCA TGGACAGCCT chr2:64871600-64871680 36 5.94e-04 CTGTCGTAGT GTGACACA GCAACTTCCG chr15:49150745-49150825 19 5.94e-04 ACTATCACAA ATGAGTAA GCAAATCTGC chr1:24247248-24247328 19 5.94e-04 aaaaatcctg ctaagtca tccccctacc chr17:27990304-27990384 28 5.94e-04 GCAAGATGAG ATGACTCT GCAGAAAATC chr7:108129652-108129732 40 5.94e-04 TCAAAAAGAG CTAAGTCA TCTCTTCATC chr2:69062023-69062103 51 5.94e-04 TGGCGACACA ATGACTCT GCAAATTGTC chr1:100515847-100515927 30 6.54e-04 tGTGACCTGC ATGACTCG GCATAATTAC chr12:1609498-1609578 33 6.54e-04 TGATGTCAGG ATGACTCG GCAGCTTTGA chr12:125399826-12539990 22 6.54e-04 GACAAGGACA ATGACTCG GCAGATCTCA chr3:177391320-177391400 33 6.54e-04 ATTGGAAGTT ATGACTCG GCACATTTTT chr5:158521987-158522067 30 7.14e-04 AGACCACAAG CTCACTCA TGCTGCCTGG chr6:157638825-157638905 36 7.76e-04 CCCCTCGGCA GTGACTAA GCACCTTCCA chr8:141353601-141353681 35 8.38e-04 GGCAGCAAAG GTGACTCT GCACATTTCA chr8:102150703-102150783 45 8.38e-04 CAGGGAGTCA GTGAGTAA GCAGTTTTAG chr10:5121157-5121237 33 9.15e-04 CAGTCTCCTT GTGAGTCT TGCTGACTTA chr13:114988273-11498835 26 9.91e-04 GCCCGAGCAG ATGACGCA GCAAAACTAT chr21:38336855-38336935 25 9.91e-04 AAACTAGGAA ATGACGCA GCAATATCTA chr3:36885323-36885403 53 9.91e-04 GCATCTTGTT CTGACTCC GTATGTGCTG chr10:3807419-3807499 7 1.07e-03 AGAGCT ATGACTGA TGATGAAGCA chr11:6749649-6749729 37 1.07e-03 GGTGCTGGCG ATGACTGA GCACTTTTAA chr7:158411095-158411175 25 1.22e-03 CAGCAATGTC CTTAGTCA TTCCCCACGT chr1:51953472-51953552 43 1.31e-03 AAAGTGCCAA GTCACTCA TCAAGCAAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTGASTCA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:23569190-23569270 1.5e-05 43_[+1]_29 chr17:79881443-79881523 1.5e-05 48_[+1]_24 chr2:68598905-68598985 1.5e-05 52_[+1]_20 chr1:167389906-167389986 1.5e-05 38_[+1]_34 chr7:43612250-43612330 1.5e-05 36_[+1]_36 chr6:56755530-56755610 1.5e-05 41_[+1]_31 chr8:146000702-146000782 1.5e-05 33_[+1]_39 chr11:95658338-95658418 1.5e-05 33_[+1]_39 chr21:35134159-35134239 1.5e-05 28_[+1]_44 chr12:48169413-48169493 1.5e-05 15_[+1]_57 chr4:7033825-7033905 1.5e-05 20_[+1]_52 chr3:45224930-45225010 1.5e-05 44_[+1]_28 chr3:14320303-14320383 1.5e-05 40_[+1]_32 chr22:37055918-37055998 1.5e-05 37_[+1]_35 chr3:121293467-121293547 1.5e-05 38_[+1]_34 chr7:73189438-73189518 1.5e-05 22_[+1]_50 chr7:115872072-115872152 1.5e-05 40_[+1]_32 chr3:169647988-169648068 1.5e-05 21_[+1]_51 chr1:92056891-92056971 1.5e-05 33_[+1]_39 chr2:26685514-26685594 1.5e-05 50_[+1]_22 chr10:94404400-94404480 1.5e-05 28_[+1]_44 chr15:63712807-63712887 1.5e-05 51_[+1]_21 chr16:20314505-20314585 1.5e-05 24_[+1]_48 chr6:52590773-52590853 1.5e-05 41_[+1]_31 chr3:34098490-34098570 3e-05 19_[+1]_53 chr5:71800061-71800141 3e-05 27_[+1]_45 chr17:53167740-53167820 3e-05 44_[+1]_28 chr17:66756079-66756159 3e-05 18_[+1]_54 chr5:141977828-141977908 3e-05 43_[+1]_29 chr16:22043175-22043255 3e-05 30_[+1]_42 chr2:121621361-121621441 3e-05 24_[+1]_48 chr6:43931155-43931235 3e-05 53_[+1]_19 chr16:69760879-69760959 3e-05 31_[+1]_41 chr19:30181987-30182067 3e-05 20_[+1]_52 chr2:157287699-157287779 3e-05 31_[+1]_41 chr1:29045550-29045630 3e-05 22_[+1]_50 chr3:185141120-185141200 3e-05 26_[+1]_46 chr3:39328875-39328955 3e-05 43_[+1]_29 chr1:26564186-26564266 3e-05 25_[+1]_47 chr1:244505099-244505179 3e-05 32_[+1]_40 chr9:131545897-131545977 3e-05 32_[+1]_40 chr2:19986329-19986409 3e-05 64_[+1]_8 chr8:80673290-80673370 3e-05 37_[+1]_35 chr5:108527133-108527213 3e-05 31_[+1]_41 chr3:185960407-185960487 3e-05 34_[+1]_38 chr1:90372332-90372412 3e-05 43_[+1]_29 chr9:116217698-116217778 3e-05 25_[+1]_47 chr6:160410336-160410416 3e-05 38_[+1]_34 chr22:41908941-41909021 3e-05 30_[+1]_42 chr19:30179335-30179415 3e-05 25_[+1]_47 chr15:43703194-43703274 3e-05 49_[+1]_23 chr4:129392888-129392968 3e-05 42_[+1]_30 chr6:24755650-24755730 3e-05 33_[+1]_39 chr22:21961966-21962046 3e-05 20_[+1]_52 chr2:29353306-29353386 3e-05 25_[+1]_47 chr5:149045883-149045963 3e-05 40_[+1]_32 chr11:66603350-66603430 3e-05 42_[+1]_30 chr8:129077941-129078021 3e-05 35_[+1]_37 chr8:101894367-101894447 3e-05 37_[+1]_35 chr7:129483968-129484048 3e-05 27_[+1]_45 chr10:81077553-81077633 3e-05 46_[+1]_26 chr2:183924425-183924505 3e-05 36_[+1]_36 chr7:87000137-87000217 3e-05 35_[+1]_37 chr10:61473371-61473451 3e-05 48_[+1]_24 chr6:41934891-41934971 3e-05 19_[+1]_53 chr11:74811454-74811534 3e-05 36_[+1]_36 chr3:170224475-170224555 3e-05 46_[+1]_26 chr12:98793466-98793546 3e-05 43_[+1]_29 chr7:5795419-5795499 3e-05 28_[+1]_44 chr16:81175138-81175218 3e-05 25_[+1]_47 chr9:130844608-130844688 3e-05 36_[+1]_36 chr21:36834158-36834238 3e-05 46_[+1]_26 chr4:99715874-99715954 3e-05 43_[+1]_29 chr21:43377696-43377776 3e-05 33_[+1]_39 chr19:10923890-10923970 3e-05 33_[+1]_39 chr7:4778508-4778588 3e-05 42_[+1]_30 chr17:44026518-44026598 3e-05 31_[+1]_41 chr16:89086839-89086919 3e-05 43_[+1]_29 chr8:102388426-102388506 3e-05 26_[+1]_46 chr6:31526954-31527034 3e-05 38_[+1]_34 chr10:7998621-7998701 3e-05 18_[+1]_54 chr8:100694863-100694943 3e-05 47_[+1]_25 chr7:4672789-4672869 3e-05 40_[+1]_32 chr20:40272361-40272441 3e-05 31_[+1]_41 chr7:51030750-51030830 3e-05 35_[+1]_37 chr4:123333879-123333959 3e-05 39_[+1]_33 chrX:153713024-153713104 3e-05 36_[+1]_36 chr1:28798135-28798215 3e-05 47_[+1]_25 chr7:65746949-65747029 3e-05 32_[+1]_40 chr2:16817829-16817909 3e-05 30_[+1]_42 chr9:131930479-131930559 3e-05 32_[+1]_40 chr2:214116437-214116517 3e-05 46_[+1]_26 chr6:160931397-160931477 3e-05 24_[+1]_48 chr1:76138659-76138739 4.6e-05 34_[+1]_38 chr1:93498710-93498790 4.6e-05 42_[+1]_30 chr15:96935720-96935800 4.6e-05 32_[+1]_40 chr4:15151592-15151672 4.6e-05 44_[+1]_28 chr1:166644583-166644663 4.6e-05 35_[+1]_37 chr15:58785330-58785410 4.6e-05 38_[+1]_34 chr18:1050179-1050259 4.6e-05 22_[+1]_50 chr3:196066788-196066868 4.6e-05 49_[+1]_23 chr5:95109619-95109699 4.6e-05 30_[+1]_42 chr6:17703720-17703800 4.6e-05 44_[+1]_28 chr2:101130211-101130291 4.6e-05 23_[+1]_49 chr16:66009152-66009232 4.6e-05 37_[+1]_35 chr6:146070885-146070965 4.6e-05 43_[+1]_29 chr8:54680924-54681004 4.6e-05 44_[+1]_28 chr2:8369862-8369942 4.6e-05 39_[+1]_33 chr3:151555033-151555113 4.6e-05 44_[+1]_28 chr5:141768384-141768464 4.6e-05 45_[+1]_27 chr20:345696-345776 4.6e-05 53_[+1]_19 chr6:43278540-43278620 4.6e-05 39_[+1]_33 chr1:194627394-194627474 4.6e-05 41_[+1]_31 chr1:27472585-27472665 4.6e-05 41_[+1]_31 chr6:16342696-16342776 4.6e-05 31_[+1]_41 chr7:112063098-112063178 4.6e-05 36_[+1]_36 chr11:28365021-28365101 4.6e-05 28_[+1]_44 chr1:212948113-212948193 4.6e-05 29_[+1]_43 chr11:74517429-74517509 4.6e-05 48_[+1]_24 chr10:75692234-75692314 4.6e-05 44_[+1]_28 chr3:40408450-40408530 4.6e-05 35_[+1]_37 chr1:39424795-39424875 4.6e-05 34_[+1]_38 chr14:77385282-77385362 6.2e-05 29_[+1]_43 chr10:12264048-12264128 6.2e-05 47_[+1]_25 chr1:179187240-179187320 6.2e-05 37_[+1]_35 chr10:93861185-93861265 6.2e-05 32_[+1]_40 chr12:127568056-12756813 6.2e-05 32_[+1]_40 chr5:56108095-56108175 6.2e-05 64_[+1]_8 chr7:76018454-76018534 7.7e-05 37_[+1]_35 chr5:173205847-173205927 7.7e-05 21_[+1]_51 chr4:84469767-84469847 7.7e-05 34_[+1]_38 chr3:25634162-25634242 7.7e-05 46_[+1]_26 chr15:44192275-44192355 7.7e-05 40_[+1]_32 chrX:15511387-15511467 7.7e-05 33_[+1]_39 chr16:89392580-89392660 7.7e-05 37_[+1]_35 chr5:68342340-68342420 7.7e-05 43_[+1]_29 chr7:158301143-158301223 7.7e-05 35_[+1]_37 chr10:76868968-76869048 7.7e-05 49_[+1]_23 chr4:89099577-89099657 7.7e-05 45_[+1]_27 chr4:74465141-74465221 7.7e-05 37_[+1]_35 chr4:38468136-38468216 7.7e-05 45_[+1]_27 chr8:10676542-10676622 7.7e-05 41_[+1]_31 chr4:25921461-25921541 7.7e-05 31_[+1]_41 chr12:92472119-92472199 7.7e-05 23_[+1]_49 chr7:23102244-23102324 7.7e-05 36_[+1]_36 chr16:67275249-67275329 7.7e-05 41_[+1]_31 chr16:53259024-53259104 7.7e-05 34_[+1]_38 chr4:48901297-48901377 7.7e-05 38_[+1]_34 chr4:100644821-100644901 7.7e-05 24_[+1]_48 chr10:22331641-22331721 7.7e-05 35_[+1]_37 chr5:5558356-5558436 7.7e-05 49_[+1]_23 chr4:52762127-52762207 7.7e-05 57_[+1]_15 chr10:62423156-62423236 9.2e-05 42_[+1]_30 chr7:27648831-27648911 9.2e-05 31_[+1]_41 chr12:108876801-10887688 9.2e-05 53_[+1]_19 chr5:67700981-67701061 9.2e-05 26_[+1]_46 chr11:124044858-12404493 9.2e-05 37_[+1]_35 chr2:106731877-106731957 0.00011 26_[+1]_46 chr11:47082524-47082604 0.00011 19_[+1]_53 chr2:169346683-169346763 0.00011 46_[+1]_26 chr1:67657533-67657613 0.00011 58_[+1]_14 chr7:39504743-39504823 0.00011 42_[+1]_30 chr1:92021898-92021978 0.00012 50_[+1]_22 chr7:134133566-134133646 0.00012 41_[+1]_31 chr7:140059372-140059452 0.00012 22_[+1]_50 chr8:108508207-108508287 0.00014 49_[+1]_23 chr9:38381100-38381180 0.00014 46_[+1]_26 chr4:145934166-145934246 0.00014 42_[+1]_30 chr2:86444494-86444574 0.00014 50_[+1]_22 chr4:39027541-39027621 0.00014 45_[+1]_27 chr2:69817596-69817676 0.00017 43_[+1]_29 chr3:41137355-41137435 0.00017 14_[+1]_58 chr8:61186921-61187001 0.00017 31_[+1]_41 chr1:243585210-243585290 0.0002 26_[+1]_46 chr11:66935717-66935797 0.0002 28_[+1]_44 chr3:120361484-120361564 0.0002 33_[+1]_39 chr8:97833179-97833259 0.00024 40_[+1]_32 chr12:114050033-11405011 0.00024 24_[+1]_48 chr7:22357413-22357493 0.00028 32_[+1]_40 chr3:23982327-23982407 0.00028 39_[+1]_33 chr1:222414023-222414103 0.00028 61_[+1]_11 chr1:165806129-165806209 0.00028 28_[+1]_44 chr15:74935261-74935341 0.00033 42_[+1]_30 chr15:91229482-91229562 0.00033 61_[+1]_11 chr6:125524731-125524811 0.00036 37_[+1]_35 chr9:130698108-130698188 0.00036 15_[+1]_57 chr2:167249673-167249753 0.00036 53_[+1]_19 chr15:50528177-50528257 0.00036 39_[+1]_33 chr19:41030342-41030422 0.00036 48_[+1]_24 chr15:68174862-68174942 0.00037 17_[+1]_55 chr1:93388045-93388125 0.00041 42_[+1]_30 chr1:175124145-175124225 0.00041 11_[+1]_61 chr15:101677975-10167805 0.0005 33_[+1]_39 chr5:77822961-77823041 0.0005 68_[+1]_4 chr1:234569483-234569563 0.0005 66_[+1]_6 chr6:91212679-91212759 0.0005 44_[+1]_28 chr11:59524501-59524581 0.0005 22_[+1]_50 chr15:51169309-51169389 0.0005 53_[+1]_19 chr22:30195316-30195396 0.0005 39_[+1]_33 chr1:91748406-91748486 0.0005 47_[+1]_25 chr11:60666948-60667028 0.0005 15_[+1]_57 chr2:122385235-122385315 0.0005 46_[+1]_26 chr2:64871600-64871680 0.00059 35_[+1]_37 chr15:49150745-49150825 0.00059 18_[+1]_54 chr1:24247248-24247328 0.00059 18_[+1]_54 chr17:27990304-27990384 0.00059 27_[+1]_45 chr7:108129652-108129732 0.00059 39_[+1]_33 chr2:69062023-69062103 0.00059 50_[+1]_22 chr1:100515847-100515927 0.00065 29_[+1]_43 chr12:1609498-1609578 0.00065 32_[+1]_40 chr12:125399826-12539990 0.00065 21_[+1]_51 chr3:177391320-177391400 0.00065 32_[+1]_40 chr5:158521987-158522067 0.00071 29_[+1]_43 chr6:157638825-157638905 0.00078 35_[+1]_37 chr8:141353601-141353681 0.00084 34_[+1]_38 chr8:102150703-102150783 0.00084 44_[+1]_28 chr10:5121157-5121237 0.00092 32_[+1]_40 chr13:114988273-11498835 0.00099 25_[+1]_47 chr21:38336855-38336935 0.00099 24_[+1]_48 chr3:36885323-36885403 0.00099 52_[+1]_20 chr10:3807419-3807499 0.0011 6_[+1]_66 chr11:6749649-6749729 0.0011 36_[+1]_36 chr7:158411095-158411175 0.0012 24_[+1]_48 chr1:51953472-51953552 0.0013 42_[+1]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTGASTCA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MTGASTCA width=8 seqs=224 chr12:23569190-23569270 ( 44) CTGACTCA 1 chr17:79881443-79881523 ( 49) CTGACTCA 1 chr2:68598905-68598985 ( 53) CTGACTCA 1 chr1:167389906-167389986 ( 39) CTGACTCA 1 chr7:43612250-43612330 ( 37) CTGACTCA 1 chr6:56755530-56755610 ( 42) CTGACTCA 1 chr8:146000702-146000782 ( 34) CTGACTCA 1 chr11:95658338-95658418 ( 34) CTGACTCA 1 chr21:35134159-35134239 ( 29) CTGACTCA 1 chr12:48169413-48169493 ( 16) CTGACTCA 1 chr4:7033825-7033905 ( 21) CTGACTCA 1 chr3:45224930-45225010 ( 45) CTGACTCA 1 chr3:14320303-14320383 ( 41) CTGACTCA 1 chr22:37055918-37055998 ( 38) CTGACTCA 1 chr3:121293467-121293547 ( 39) CTGACTCA 1 chr7:73189438-73189518 ( 23) CTGACTCA 1 chr7:115872072-115872152 ( 41) CTGACTCA 1 chr3:169647988-169648068 ( 22) CTGACTCA 1 chr1:92056891-92056971 ( 34) CTGACTCA 1 chr2:26685514-26685594 ( 51) CTGACTCA 1 chr10:94404400-94404480 ( 29) CTGACTCA 1 chr15:63712807-63712887 ( 52) CTGACTCA 1 chr16:20314505-20314585 ( 25) CTGACTCA 1 chr6:52590773-52590853 ( 42) CTGACTCA 1 chr3:34098490-34098570 ( 20) CTGAGTCA 1 chr5:71800061-71800141 ( 28) CTGAGTCA 1 chr17:53167740-53167820 ( 45) CTGAGTCA 1 chr17:66756079-66756159 ( 19) CTGAGTCA 1 chr5:141977828-141977908 ( 44) CTGAGTCA 1 chr16:22043175-22043255 ( 31) CTGAGTCA 1 chr2:121621361-121621441 ( 25) CTGAGTCA 1 chr6:43931155-43931235 ( 54) CTGAGTCA 1 chr16:69760879-69760959 ( 32) CTGAGTCA 1 chr19:30181987-30182067 ( 21) CTGAGTCA 1 chr2:157287699-157287779 ( 32) CTGAGTCA 1 chr1:29045550-29045630 ( 23) CTGAGTCA 1 chr3:185141120-185141200 ( 27) CTGAGTCA 1 chr3:39328875-39328955 ( 44) CTGAGTCA 1 chr1:26564186-26564266 ( 26) CTGAGTCA 1 chr1:244505099-244505179 ( 33) CTGAGTCA 1 chr9:131545897-131545977 ( 33) CTGAGTCA 1 chr2:19986329-19986409 ( 65) CTGAGTCA 1 chr8:80673290-80673370 ( 38) CTGAGTCA 1 chr5:108527133-108527213 ( 32) CTGAGTCA 1 chr3:185960407-185960487 ( 35) CTGAGTCA 1 chr1:90372332-90372412 ( 44) CTGAGTCA 1 chr9:116217698-116217778 ( 26) CTGAGTCA 1 chr6:160410336-160410416 ( 39) CTGAGTCA 1 chr22:41908941-41909021 ( 31) CTGAGTCA 1 chr19:30179335-30179415 ( 26) CTGAGTCA 1 chr15:43703194-43703274 ( 50) CTGAGTCA 1 chr4:129392888-129392968 ( 43) CTGAGTCA 1 chr6:24755650-24755730 ( 34) CTGAGTCA 1 chr22:21961966-21962046 ( 21) CTGAGTCA 1 chr2:29353306-29353386 ( 26) CTGAGTCA 1 chr5:149045883-149045963 ( 41) CTGAGTCA 1 chr11:66603350-66603430 ( 43) CTGAGTCA 1 chr8:129077941-129078021 ( 36) CTGAGTCA 1 chr8:101894367-101894447 ( 38) CTGAGTCA 1 chr7:129483968-129484048 ( 28) CTGAGTCA 1 chr10:81077553-81077633 ( 47) CTGAGTCA 1 chr2:183924425-183924505 ( 37) CTGAGTCA 1 chr7:87000137-87000217 ( 36) CTGAGTCA 1 chr10:61473371-61473451 ( 49) CTGAGTCA 1 chr6:41934891-41934971 ( 20) CTGAGTCA 1 chr11:74811454-74811534 ( 37) CTGAGTCA 1 chr3:170224475-170224555 ( 47) CTGAGTCA 1 chr12:98793466-98793546 ( 44) CTGAGTCA 1 chr7:5795419-5795499 ( 29) CTGAGTCA 1 chr16:81175138-81175218 ( 26) CTGAGTCA 1 chr9:130844608-130844688 ( 37) CTGAGTCA 1 chr21:36834158-36834238 ( 47) CTGAGTCA 1 chr4:99715874-99715954 ( 44) CTGAGTCA 1 chr21:43377696-43377776 ( 34) CTGAGTCA 1 chr19:10923890-10923970 ( 34) CTGAGTCA 1 chr7:4778508-4778588 ( 43) CTGAGTCA 1 chr17:44026518-44026598 ( 32) CTGAGTCA 1 chr16:89086839-89086919 ( 44) CTGAGTCA 1 chr8:102388426-102388506 ( 27) CTGAGTCA 1 chr6:31526954-31527034 ( 39) CTGAGTCA 1 chr10:7998621-7998701 ( 19) CTGAGTCA 1 chr8:100694863-100694943 ( 48) CTGAGTCA 1 chr7:4672789-4672869 ( 41) CTGAGTCA 1 chr20:40272361-40272441 ( 32) CTGAGTCA 1 chr7:51030750-51030830 ( 36) CTGAGTCA 1 chr4:123333879-123333959 ( 40) CTGAGTCA 1 chrX:153713024-153713104 ( 37) CTGAGTCA 1 chr1:28798135-28798215 ( 48) CTGAGTCA 1 chr7:65746949-65747029 ( 33) CTGAGTCA 1 chr2:16817829-16817909 ( 31) CTGAGTCA 1 chr9:131930479-131930559 ( 33) CTGAGTCA 1 chr2:214116437-214116517 ( 47) CTGAGTCA 1 chr6:160931397-160931477 ( 25) CTGAGTCA 1 chr1:76138659-76138739 ( 35) ATGACTCA 1 chr1:93498710-93498790 ( 43) ATGACTCA 1 chr15:96935720-96935800 ( 33) ATGACTCA 1 chr4:15151592-15151672 ( 45) ATGACTCA 1 chr1:166644583-166644663 ( 36) ATGACTCA 1 chr15:58785330-58785410 ( 39) ATGACTCA 1 chr18:1050179-1050259 ( 23) ATGACTCA 1 chr3:196066788-196066868 ( 50) ATGACTCA 1 chr5:95109619-95109699 ( 31) ATGACTCA 1 chr6:17703720-17703800 ( 45) ATGACTCA 1 chr2:101130211-101130291 ( 24) ATGACTCA 1 chr16:66009152-66009232 ( 38) ATGACTCA 1 chr6:146070885-146070965 ( 44) ATGACTCA 1 chr8:54680924-54681004 ( 45) ATGACTCA 1 chr2:8369862-8369942 ( 40) ATGACTCA 1 chr3:151555033-151555113 ( 45) ATGACTCA 1 chr5:141768384-141768464 ( 46) ATGACTCA 1 chr20:345696-345776 ( 54) ATGACTCA 1 chr6:43278540-43278620 ( 40) ATGACTCA 1 chr1:194627394-194627474 ( 42) ATGACTCA 1 chr1:27472585-27472665 ( 42) ATGACTCA 1 chr6:16342696-16342776 ( 32) ATGACTCA 1 chr7:112063098-112063178 ( 37) ATGACTCA 1 chr11:28365021-28365101 ( 29) ATGACTCA 1 chr1:212948113-212948193 ( 30) ATGACTCA 1 chr11:74517429-74517509 ( 49) ATGACTCA 1 chr10:75692234-75692314 ( 45) ATGACTCA 1 chr3:40408450-40408530 ( 36) ATGACTCA 1 chr1:39424795-39424875 ( 35) ATGACTCA 1 chr14:77385282-77385362 ( 30) ATGAGTCA 1 chr10:12264048-12264128 ( 48) ATGAGTCA 1 chr1:179187240-179187320 ( 38) ATGAGTCA 1 chr10:93861185-93861265 ( 33) ATGAGTCA 1 chr12:127568056-12756813 ( 33) ATGAGTCA 1 chr5:56108095-56108175 ( 65) ATGAGTCA 1 chr7:76018454-76018534 ( 38) GTGACTCA 1 chr5:173205847-173205927 ( 22) GTGACTCA 1 chr4:84469767-84469847 ( 35) GTGACTCA 1 chr3:25634162-25634242 ( 47) GTGACTCA 1 chr15:44192275-44192355 ( 41) GTGACTCA 1 chrX:15511387-15511467 ( 34) GTGACTCA 1 chr16:89392580-89392660 ( 38) GTGACTCA 1 chr5:68342340-68342420 ( 44) GTGACTCA 1 chr7:158301143-158301223 ( 36) GTGACTCA 1 chr10:76868968-76869048 ( 50) GTGACTCA 1 chr4:89099577-89099657 ( 46) GTGACTCA 1 chr4:74465141-74465221 ( 38) GTGACTCA 1 chr4:38468136-38468216 ( 46) GTGACTCA 1 chr8:10676542-10676622 ( 42) GTGACTCA 1 chr4:25921461-25921541 ( 32) GTGACTCA 1 chr12:92472119-92472199 ( 24) GTGACTCA 1 chr7:23102244-23102324 ( 37) GTGACTCA 1 chr16:67275249-67275329 ( 42) GTGACTCA 1 chr16:53259024-53259104 ( 35) GTGACTCA 1 chr4:48901297-48901377 ( 39) GTGACTCA 1 chr4:100644821-100644901 ( 25) GTGACTCA 1 chr10:22331641-22331721 ( 36) GTGACTCA 1 chr5:5558356-5558436 ( 50) GTGACTCA 1 chr4:52762127-52762207 ( 58) GTGACTCA 1 chr10:62423156-62423236 ( 43) GTGAGTCA 1 chr7:27648831-27648911 ( 32) GTGAGTCA 1 chr12:108876801-10887688 ( 54) GTGAGTCA 1 chr5:67700981-67701061 ( 27) GTGAGTCA 1 chr11:124044858-12404493 ( 38) GTGAGTCA 1 chr2:106731877-106731957 ( 27) CTGATTCA 1 chr11:47082524-47082604 ( 20) CTGATTCA 1 chr2:169346683-169346763 ( 47) CTGATTCA 1 chr1:67657533-67657613 ( 59) CTGATTCA 1 chr7:39504743-39504823 ( 43) CTGATTCA 1 chr1:92021898-92021978 ( 51) CTGAATCA 1 chr7:134133566-134133646 ( 42) CTGAATCA 1 chr7:140059372-140059452 ( 23) CTGAATCA 1 chr8:108508207-108508287 ( 50) ATGATTCA 1 chr9:38381100-38381180 ( 47) ATGATTCA 1 chr4:145934166-145934246 ( 43) ATGATTCA 1 chr2:86444494-86444574 ( 51) ATGATTCA 1 chr4:39027541-39027621 ( 46) ATGATTCA 1 chr2:69817596-69817676 ( 44) GTGATTCA 1 chr3:41137355-41137435 ( 15) GTGATTCA 1 chr8:61186921-61187001 ( 32) GTGATTCA 1 chr1:243585210-243585290 ( 27) ATGAATCA 1 chr11:66935717-66935797 ( 29) ATGAATCA 1 chr3:120361484-120361564 ( 34) ATGAATCA 1 chr8:97833179-97833259 ( 41) CTGTCTCA 1 chr12:114050033-11405011 ( 25) CTGTCTCA 1 chr7:22357413-22357493 ( 33) CTGTGTCA 1 chr3:23982327-23982407 ( 40) CTGTGTCA 1 chr1:222414023-222414103 ( 62) CTGTGTCA 1 chr1:165806129-165806209 ( 29) CTGTGTCA 1 chr15:74935261-74935341 ( 43) GTGAATCA 1 chr15:91229482-91229562 ( 62) CTGAGTCT 1 chr6:125524731-125524811 ( 38) ATGACACA 1 chr9:130698108-130698188 ( 16) ATGACACA 1 chr2:167249673-167249753 ( 54) ATGACACA 1 chr15:50528177-50528257 ( 40) ATGACACA 1 chr19:41030342-41030422 ( 49) ATGACACA 1 chr15:68174862-68174942 ( 18) ATGAGACA 1 chr1:93388045-93388125 ( 43) CAGACTCA 1 chr1:175124145-175124225 ( 12) TTGACTCA 1 chr15:101677975-10167805 ( 34) CAGAGTCA 1 chr5:77822961-77823041 ( 69) CTGCCTCA 1 chr1:234569483-234569563 ( 67) TTGAGTCA 1 chr6:91212679-91212759 ( 45) ATGACTAA 1 chr11:59524501-59524581 ( 23) CTGCCTCA 1 chr15:51169309-51169389 ( 54) CTGCCTCA 1 chr22:30195316-30195396 ( 40) ATGACTAA 1 chr1:91748406-91748486 ( 48) ATGACTAA 1 chr11:60666948-60667028 ( 16) CTAACTCA 1 chr2:122385235-122385315 ( 47) CAGAGTCA 1 chr2:64871600-64871680 ( 36) GTGACACA 1 chr15:49150745-49150825 ( 19) ATGAGTAA 1 chr1:24247248-24247328 ( 19) CTAAGTCA 1 chr17:27990304-27990384 ( 28) ATGACTCT 1 chr7:108129652-108129732 ( 40) CTAAGTCA 1 chr2:69062023-69062103 ( 51) ATGACTCT 1 chr1:100515847-100515927 ( 30) ATGACTCG 1 chr12:1609498-1609578 ( 33) ATGACTCG 1 chr12:125399826-12539990 ( 22) ATGACTCG 1 chr3:177391320-177391400 ( 33) ATGACTCG 1 chr5:158521987-158522067 ( 30) CTCACTCA 1 chr6:157638825-157638905 ( 36) GTGACTAA 1 chr8:141353601-141353681 ( 35) GTGACTCT 1 chr8:102150703-102150783 ( 45) GTGAGTAA 1 chr10:5121157-5121237 ( 33) GTGAGTCT 1 chr13:114988273-11498835 ( 26) ATGACGCA 1 chr21:38336855-38336935 ( 25) ATGACGCA 1 chr3:36885323-36885403 ( 53) CTGACTCC 1 chr10:3807419-3807499 ( 7) ATGACTGA 1 chr11:6749649-6749729 ( 37) ATGACTGA 1 chr7:158411095-158411175 ( 25) CTTAGTCA 1 chr1:51953472-51953552 ( 43) GTCACTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTGASTCA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 6.94229 E= 7.5e-305 16 114 -47 -488 -424 -1445 -1445 191 -424 -477 201 -587 193 -418 -1445 -329 -301 100 81 -218 -301 -1445 -476 187 -324 199 -476 -1445 192 -576 -376 -356 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTGASTCA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 224 E= 7.5e-305 0.281250 0.535714 0.174107 0.008929 0.013393 0.000000 0.000000 0.986607 0.013393 0.008929 0.973214 0.004464 0.959821 0.013393 0.000000 0.026786 0.031250 0.486607 0.424107 0.058036 0.031250 0.000000 0.008929 0.959821 0.026786 0.964286 0.008929 0.000000 0.955357 0.004464 0.017857 0.022321 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTGASTCA MEME-1 regular expression -------------------------------------------------------------------------------- [CA]TGA[CG]TCA -------------------------------------------------------------------------------- Time 4.72 secs. ******************************************************************************** ******************************************************************************** MOTIF GSAGGARG MEME-2 width = 8 sites = 24 llr = 204 E-value = 6.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSAGGARG MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::a3:85: pos.-specific C :4:::3:: probability G a6:8a:4a matrix T ::::::1: bits 2.0 * * * * 1.8 * * * * 1.6 * * * * 1.4 * * * * Relative 1.2 * **** * Entropy 1.0 ****** * (12.3 bits) 0.8 ****** * 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGAGGAAG consensus C A CG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSAGGARG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:43612250-43612330 4 1.33e-05 GAT GGAGGAAG TGGTGTGAAC chr7:39504743-39504823 9 1.33e-05 TGCCACCT GGAGGAAG GACTGCACCC chr3:43814880-43814960 73 2.60e-05 CTGGTGGCAA GGAGGAGG chr4:7033825-7033905 38 2.60e-05 ACCTCCTCTC GGAGGAGG CGTCCTGTCT chr5:176855152-176855232 63 2.60e-05 AACCAGCCAG GGAGGAGG GGTGGGGAGG chr2:64871600-64871680 55 3.94e-05 CAACTTCCGA GCAGGAAG GAGAAGCCCG chr12:1609498-1609578 71 3.94e-05 GGCCCTTTAG GCAGGAAG CC chr5:158521987-158522067 73 5.22e-05 GGAGGCAAAA GCAGGAGG chr12:108876801-10887688 36 5.22e-05 aggctgcaca gcaggagg tgagtggtgg chr1:165806129-165806209 65 5.22e-05 aggcagaagg gcaggagg agaggagg chr5:149045883-149045963 58 6.50e-05 acacacagtg ggaggcag ggctagacag chr14:77385282-77385362 54 7.73e-05 GCGTCGTGGG GGAGGCGG GAGGCGAGGC chrX:15511387-15511467 66 7.73e-05 GCGGCCTAGA GGAGGCGG GAGGCGG chr2:157287699-157287779 49 9.11e-05 ATTCTTATGG GGAAGAAG AGAAACACTT chr8:129077941-129078021 26 9.11e-05 CACCAAGGGG GGAAGAAG TGCTGAGTCA chr7:4778508-4778588 73 9.11e-05 CGGGTCCCTG GGAAGAAG chr1:90406839-90406919 56 1.04e-04 GTGGGCTGCT GGAAGAGG TGGTGGCAAT chr3:45224930-45225010 7 1.17e-04 aggcag gcaggcag gcaggcGAGG chr7:51030750-51030830 49 1.17e-04 AGTCATCTCC GCAGGCAG GACCTCCCCA chr16:20314505-20314585 54 1.17e-04 TAAATAAATG GCAGGCAG GTGTtatctg chr1:39424795-39424875 43 1.44e-04 gaatgactca gcaagaag gccttcaaca chr6:43931155-43931235 18 1.57e-04 ggatgctgaa gcaagagg atcatttgag chr6:7255361-7255441 48 1.71e-04 CAGGAGTGAG GGAGGATG ACTAGGCTTA chr20:345696-345776 17 1.71e-04 gaccatagct ggagGATG ATTCAGCAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSAGGARG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:43612250-43612330 1.3e-05 3_[+2]_69 chr7:39504743-39504823 1.3e-05 8_[+2]_64 chr3:43814880-43814960 2.6e-05 72_[+2] chr4:7033825-7033905 2.6e-05 37_[+2]_35 chr5:176855152-176855232 2.6e-05 62_[+2]_10 chr2:64871600-64871680 3.9e-05 54_[+2]_18 chr12:1609498-1609578 3.9e-05 70_[+2]_2 chr5:158521987-158522067 5.2e-05 72_[+2] chr12:108876801-10887688 5.2e-05 35_[+2]_37 chr1:165806129-165806209 5.2e-05 64_[+2]_8 chr5:149045883-149045963 6.5e-05 57_[+2]_15 chr14:77385282-77385362 7.7e-05 53_[+2]_19 chrX:15511387-15511467 7.7e-05 65_[+2]_7 chr2:157287699-157287779 9.1e-05 48_[+2]_24 chr8:129077941-129078021 9.1e-05 25_[+2]_47 chr7:4778508-4778588 9.1e-05 72_[+2] chr1:90406839-90406919 0.0001 55_[+2]_17 chr3:45224930-45225010 0.00012 6_[+2]_66 chr7:51030750-51030830 0.00012 48_[+2]_24 chr16:20314505-20314585 0.00012 53_[+2]_19 chr1:39424795-39424875 0.00014 42_[+2]_30 chr6:43931155-43931235 0.00016 17_[+2]_55 chr6:7255361-7255441 0.00017 47_[+2]_25 chr20:345696-345776 0.00017 16_[+2]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSAGGARG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSAGGARG width=8 seqs=24 chr7:43612250-43612330 ( 4) GGAGGAAG 1 chr7:39504743-39504823 ( 9) GGAGGAAG 1 chr3:43814880-43814960 ( 73) GGAGGAGG 1 chr4:7033825-7033905 ( 38) GGAGGAGG 1 chr5:176855152-176855232 ( 63) GGAGGAGG 1 chr2:64871600-64871680 ( 55) GCAGGAAG 1 chr12:1609498-1609578 ( 71) GCAGGAAG 1 chr5:158521987-158522067 ( 73) GCAGGAGG 1 chr12:108876801-10887688 ( 36) GCAGGAGG 1 chr1:165806129-165806209 ( 65) GCAGGAGG 1 chr5:149045883-149045963 ( 58) GGAGGCAG 1 chr14:77385282-77385362 ( 54) GGAGGCGG 1 chrX:15511387-15511467 ( 66) GGAGGCGG 1 chr2:157287699-157287779 ( 49) GGAAGAAG 1 chr8:129077941-129078021 ( 26) GGAAGAAG 1 chr7:4778508-4778588 ( 73) GGAAGAAG 1 chr1:90406839-90406919 ( 56) GGAAGAGG 1 chr3:45224930-45225010 ( 7) GCAGGCAG 1 chr7:51030750-51030830 ( 49) GCAGGCAG 1 chr16:20314505-20314585 ( 54) GCAGGCAG 1 chr1:39424795-39424875 ( 43) GCAAGAAG 1 chr6:43931155-43931235 ( 18) GCAAGAGG 1 chr6:7255361-7255441 ( 48) GGAGGATG 1 chr20:345696-345776 ( 17) GGAGGATG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSAGGARG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.477 E= 6.1e+004 -1123 -1123 205 -1123 -1123 78 127 -1123 199 -1123 -1123 -1123 -1 -1123 163 -1123 -1123 -1123 205 -1123 157 4 -1123 -1123 99 -1123 79 -165 -1123 -1123 205 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSAGGARG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 6.1e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.416667 0.583333 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.750000 0.000000 0.000000 0.000000 1.000000 0.000000 0.750000 0.250000 0.000000 0.000000 0.500000 0.000000 0.416667 0.083333 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSAGGARG MEME-2 regular expression -------------------------------------------------------------------------------- G[GC]A[GA]G[AC][AG]G -------------------------------------------------------------------------------- Time 8.00 secs. ******************************************************************************** ******************************************************************************** MOTIF ACWGTGCA MEME-3 width = 8 sites = 11 llr = 109 E-value = 2.7e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACWGTGCA MEME-3 Description -------------------------------------------------------------------------------- Simplified A a25::::a pos.-specific C :8::::a: probability G :::a:a:: matrix T ::5:a::: bits 2.0 * * *** 1.8 * ***** 1.6 * ***** 1.4 ** ***** Relative 1.2 ** ***** Entropy 1.0 ******** (14.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACTGTGCA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACWGTGCA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:234569483-234569563 31 1.52e-05 ttacacagtg actgtgca ttcagcacaa chr21:40691969-40692049 39 1.52e-05 aggaaagatg actgtgca gtaaagccat chr21:38336855-38336935 65 1.52e-05 GGCAAAGCTT ACTGTGCA GAGTGACA chr7:92676076-92676156 27 1.52e-05 GATGGCCATG ACTGTGCA CTTATAAAGG chr12:92472119-92472199 48 1.52e-05 TTTTGCTCCT ACTGTGCA CTCCACCCTT chr4:129491697-129491777 40 1.52e-05 gcaaggcatg actgtgca ttgtttccta chr7:43612250-43612330 54 2.97e-05 ATGGCTCATG ACAGTGCA GAACAcaaat chr7:107744568-107744648 29 2.97e-05 ATTCAGGATG ACAGTGCA GATCTCTGGA chr3:40408450-40408530 56 2.97e-05 ACATCTATTC ACAGTGCA GGCTGTTTAT chr4:84469767-84469847 57 6.06e-05 TGTTGGCCAC AAAGTGCA TGCAACCACT chr16:3747068-3747148 47 6.06e-05 gcaatgtact aaagtgca tatcatccta -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACWGTGCA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:234569483-234569563 1.5e-05 30_[+3]_42 chr21:40691969-40692049 1.5e-05 38_[+3]_34 chr21:38336855-38336935 1.5e-05 64_[+3]_8 chr7:92676076-92676156 1.5e-05 26_[+3]_46 chr12:92472119-92472199 1.5e-05 47_[+3]_25 chr4:129491697-129491777 1.5e-05 39_[+3]_33 chr7:43612250-43612330 3e-05 53_[+3]_19 chr7:107744568-107744648 3e-05 28_[+3]_44 chr3:40408450-40408530 3e-05 55_[+3]_17 chr4:84469767-84469847 6.1e-05 56_[+3]_16 chr16:3747068-3747148 6.1e-05 46_[+3]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACWGTGCA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACWGTGCA width=8 seqs=11 chr1:234569483-234569563 ( 31) ACTGTGCA 1 chr21:40691969-40692049 ( 39) ACTGTGCA 1 chr21:38336855-38336935 ( 65) ACTGTGCA 1 chr7:92676076-92676156 ( 27) ACTGTGCA 1 chr12:92472119-92472199 ( 48) ACTGTGCA 1 chr4:129491697-129491777 ( 40) ACTGTGCA 1 chr7:43612250-43612330 ( 54) ACAGTGCA 1 chr7:107744568-107744648 ( 29) ACAGTGCA 1 chr3:40408450-40408530 ( 56) ACAGTGCA 1 chr4:84469767-84469847 ( 57) AAAGTGCA 1 chr16:3747068-3747148 ( 47) AAAGTGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACWGTGCA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.0506 E= 2.7e+004 198 -1010 -1010 -1010 -47 175 -1010 -1010 85 -1010 -1010 105 -1010 -1010 205 -1010 -1010 -1010 -1010 193 -1010 -1010 205 -1010 -1010 204 -1010 -1010 198 -1010 -1010 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACWGTGCA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 2.7e+004 1.000000 0.000000 0.000000 0.000000 0.181818 0.818182 0.000000 0.000000 0.454545 0.000000 0.000000 0.545455 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACWGTGCA MEME-3 regular expression -------------------------------------------------------------------------------- AC[TA]GTGCA -------------------------------------------------------------------------------- Time 11.25 secs. ******************************************************************************** ******************************************************************************** MOTIF AGGCAGGC MEME-4 width = 8 sites = 2 llr = 23 E-value = 1.6e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGGCAGGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A a:::a::: pos.-specific C :::a:::a probability G :aa::aa: matrix T :::::::: bits 2.0 ******** 1.8 ******** 1.6 ******** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (16.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGGCAGGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGCAGGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr5:141768384-141768464 71 1.29e-05 tatttgctaa aggcaggc ca chr4:48901297-48901377 18 1.29e-05 GTCTTATGTG AGGCAGGC TCAGAAAGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGCAGGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:141768384-141768464 1.3e-05 70_[+4]_2 chr4:48901297-48901377 1.3e-05 17_[+4]_55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGCAGGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGGCAGGC width=8 seqs=2 chr5:141768384-141768464 ( 71) AGGCAGGC 1 chr4:48901297-48901377 ( 18) AGGCAGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGCAGGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.3895 E= 1.6e+005 198 -765 -765 -765 -765 -765 204 -765 -765 -765 204 -765 -765 203 -765 -765 198 -765 -765 -765 -765 -765 204 -765 -765 -765 204 -765 -765 203 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGCAGGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.6e+005 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGCAGGC MEME-4 regular expression -------------------------------------------------------------------------------- AGGCAGGC -------------------------------------------------------------------------------- Time 14.49 secs. ******************************************************************************** ******************************************************************************** MOTIF CWSCMMAS MEME-5 width = 8 sites = 39 llr = 304 E-value = 2.6e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CWSCMMAS MEME-5 Description -------------------------------------------------------------------------------- Simplified A :5::54a: pos.-specific C a:4a56:4 probability G ::6::::6 matrix T :5:::::: bits 2.0 * * * 1.8 * * * 1.6 * * * 1.4 * * * Relative 1.2 * * * Entropy 1.0 ******** (11.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAGCCCAG consensus TC AA C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWSCMMAS MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:23102244-23102324 51 1.30e-05 CTCAGCACTG CAGCCCAG CCCACGCAGT chr17:79881443-79881523 15 2.65e-05 AACCCCGGCA CTGCCCAG AGCGCGGCTG chr7:139945667-139945747 7 2.65e-05 tttggt ctgcccag ccagtcttag chr1:46813875-46813955 24 2.65e-05 GATATCCTGC CTGCCCAG TCATCCTTTT chr4:38468136-38468216 58 2.65e-05 GACTCAGCAC CTGCCCAG CCAAATCCTG chr2:121621361-121621441 12 3.99e-05 GTCCTGGGAA CAGCACAG ATAAGCTGAG chr8:100694863-100694943 66 3.99e-05 tacctgaagc cagcacag cactggg chr15:101677975-10167805 49 5.40e-05 TCACCAGCTG CTGCACAG TGTCTGCGTT chr6:56755530-56755610 25 5.40e-05 GTAGCTAAAA CTGCACAG TCACGCTTTC chr2:243040804-243040884 18 5.40e-05 AGATCCTTTT CTGCACAG TCACCTCCTG chr3:177391320-177391400 52 5.40e-05 CACATTTTTC CTGCACAG TCTTGTGCGT chr10:93861185-93861265 7 6.70e-05 AAGCAG CACCCCAG CTCATCCTAA chr3:185141120-185141200 1 9.40e-05 . CAGCCAAG GCAGACCGGA chr7:158411095-158411175 47 9.40e-05 CCACGTCATT CAGCCAAG ATCGTAGAGG chr7:51030750-51030830 60 9.40e-05 CAGGCAGGAC CTCCCCAG GCAGGCACAA chr2:68598905-68598985 36 1.35e-04 ttttttttga cagcccac atcaaattgc chr4:129392888-129392968 6 1.35e-04 GCTCC CACCACAG GGTGTGTTCT chr3:120361484-120361564 46 1.35e-04 gaatcagctc cagcccac cactagggct chr16:3747068-3747148 70 1.35e-04 tcctacattc ctgccaag tca chr8:141353601-141353681 27 1.76e-04 GGTGACAAGG CAGCAAAG GTGACTCTGC chr15:68174862-68174942 31 2.04e-04 AGACACAAAT CTGCAAAG TCATATAGCA chr12:48169413-48169493 52 2.32e-04 TCTGCTGAGT CACCCAAG GGTAGCCCCA chr8:54680924-54681004 62 2.32e-04 agcaatttca cacccaag tatctaacag chr17:53167740-53167820 29 2.59e-04 AGTCACTTTT CACCCCAC TCAGACTGCT chr2:19986329-19986409 55 2.59e-04 CCATGAGTGC CTCCCAAG GACTGAGTCA chr16:67275249-67275329 59 2.59e-04 AGCAGCCTAC CACCCCAC CCCCATTCAG chr1:243585210-243585290 11 3.00e-04 AGTGTTCTCT CTCCCCAC GCGCTTAGAT chr1:29045550-29045630 6 3.00e-04 GCAGT CTCCCCAC TGGAGAACGC chr8:10676542-10676622 66 3.00e-04 TCCGCGCAGG CACCAAAG CCAGGTA chr7:134133566-134133646 62 3.42e-04 ACTCAGGACT CTGCCAAC ACCCAGGAGC chr15:43703194-43703274 58 3.42e-04 tgctgagtca ctgccaac accccttaca chr7:115872072-115872152 16 3.42e-04 TAGCGAGCTA CTCCAAAG CCTTAGTGTA chr16:53259024-53259104 20 3.42e-04 TATAGTTTGT CACCACAC TGTAGCAGTG chr1:28798135-28798215 9 3.42e-04 CTGGAGCC CTCCAAAG GGACTTTGCT chr5:56108095-56108175 32 3.42e-04 gcatgttgta caccacac agtaatggct chr21:40691969-40692049 19 3.71e-04 tccctccctg ctccacac ccaggaaaga chr3:23982327-23982407 48 3.71e-04 tgctgtgtca cagcaaac tgccagagct chr20:345696-345776 28 3.71e-04 gagGATGATT CAGCAAAC CTGGCAGGTC chr12:114050033-11405011 41 3.71e-04 CATTCTCCTG CAGCAAAC TGTCGGCCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWSCMMAS MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:23102244-23102324 1.3e-05 50_[+5]_22 chr17:79881443-79881523 2.7e-05 14_[+5]_58 chr7:139945667-139945747 2.7e-05 6_[+5]_66 chr1:46813875-46813955 2.7e-05 23_[+5]_49 chr4:38468136-38468216 2.7e-05 57_[+5]_15 chr2:121621361-121621441 4e-05 11_[+5]_61 chr8:100694863-100694943 4e-05 65_[+5]_7 chr15:101677975-10167805 5.4e-05 48_[+5]_24 chr6:56755530-56755610 5.4e-05 24_[+5]_48 chr2:243040804-243040884 5.4e-05 17_[+5]_55 chr3:177391320-177391400 5.4e-05 51_[+5]_21 chr10:93861185-93861265 6.7e-05 6_[+5]_66 chr3:185141120-185141200 9.4e-05 [+5]_72 chr7:158411095-158411175 9.4e-05 46_[+5]_26 chr7:51030750-51030830 9.4e-05 59_[+5]_13 chr2:68598905-68598985 0.00013 35_[+5]_37 chr4:129392888-129392968 0.00013 5_[+5]_67 chr3:120361484-120361564 0.00013 45_[+5]_27 chr16:3747068-3747148 0.00013 69_[+5]_3 chr8:141353601-141353681 0.00018 26_[+5]_46 chr15:68174862-68174942 0.0002 30_[+5]_42 chr12:48169413-48169493 0.00023 51_[+5]_21 chr8:54680924-54681004 0.00023 61_[+5]_11 chr17:53167740-53167820 0.00026 28_[+5]_44 chr2:19986329-19986409 0.00026 54_[+5]_18 chr16:67275249-67275329 0.00026 58_[+5]_14 chr1:243585210-243585290 0.0003 10_[+5]_62 chr1:29045550-29045630 0.0003 5_[+5]_67 chr8:10676542-10676622 0.0003 65_[+5]_7 chr7:134133566-134133646 0.00034 61_[+5]_11 chr15:43703194-43703274 0.00034 57_[+5]_15 chr7:115872072-115872152 0.00034 15_[+5]_57 chr16:53259024-53259104 0.00034 19_[+5]_53 chr1:28798135-28798215 0.00034 8_[+5]_64 chr5:56108095-56108175 0.00034 31_[+5]_41 chr21:40691969-40692049 0.00037 18_[+5]_54 chr3:23982327-23982407 0.00037 47_[+5]_25 chr20:345696-345776 0.00037 27_[+5]_45 chr12:114050033-11405011 0.00037 40_[+5]_32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWSCMMAS MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CWSCMMAS width=8 seqs=39 chr7:23102244-23102324 ( 51) CAGCCCAG 1 chr17:79881443-79881523 ( 15) CTGCCCAG 1 chr7:139945667-139945747 ( 7) CTGCCCAG 1 chr1:46813875-46813955 ( 24) CTGCCCAG 1 chr4:38468136-38468216 ( 58) CTGCCCAG 1 chr2:121621361-121621441 ( 12) CAGCACAG 1 chr8:100694863-100694943 ( 66) CAGCACAG 1 chr15:101677975-10167805 ( 49) CTGCACAG 1 chr6:56755530-56755610 ( 25) CTGCACAG 1 chr2:243040804-243040884 ( 18) CTGCACAG 1 chr3:177391320-177391400 ( 52) CTGCACAG 1 chr10:93861185-93861265 ( 7) CACCCCAG 1 chr3:185141120-185141200 ( 1) CAGCCAAG 1 chr7:158411095-158411175 ( 47) CAGCCAAG 1 chr7:51030750-51030830 ( 60) CTCCCCAG 1 chr2:68598905-68598985 ( 36) CAGCCCAC 1 chr4:129392888-129392968 ( 6) CACCACAG 1 chr3:120361484-120361564 ( 46) CAGCCCAC 1 chr16:3747068-3747148 ( 70) CTGCCAAG 1 chr8:141353601-141353681 ( 27) CAGCAAAG 1 chr15:68174862-68174942 ( 31) CTGCAAAG 1 chr12:48169413-48169493 ( 52) CACCCAAG 1 chr8:54680924-54681004 ( 62) CACCCAAG 1 chr17:53167740-53167820 ( 29) CACCCCAC 1 chr2:19986329-19986409 ( 55) CTCCCAAG 1 chr16:67275249-67275329 ( 59) CACCCCAC 1 chr1:243585210-243585290 ( 11) CTCCCCAC 1 chr1:29045550-29045630 ( 6) CTCCCCAC 1 chr8:10676542-10676622 ( 66) CACCAAAG 1 chr7:134133566-134133646 ( 62) CTGCCAAC 1 chr15:43703194-43703274 ( 58) CTGCCAAC 1 chr7:115872072-115872152 ( 16) CTCCAAAG 1 chr16:53259024-53259104 ( 20) CACCACAC 1 chr1:28798135-28798215 ( 9) CTCCAAAG 1 chr5:56108095-56108175 ( 32) CACCACAC 1 chr21:40691969-40692049 ( 19) CTCCACAC 1 chr3:23982327-23982407 ( 48) CAGCAAAC 1 chr20:345696-345776 ( 28) CAGCAAAC 1 chr12:114050033-11405011 ( 41) CAGCAAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWSCMMAS MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.3267 E= 2.6e+004 -1193 204 -1193 -1193 102 -1193 -1193 89 -1193 75 129 -1193 -1193 204 -1193 -1193 87 115 -1193 -1193 70 128 -1193 -1193 199 -1193 -1193 -1193 -1193 56 141 -1193 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWSCMMAS MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 39 E= 2.6e+004 0.000000 1.000000 0.000000 0.000000 0.512821 0.000000 0.000000 0.487179 0.000000 0.410256 0.589744 0.000000 0.000000 1.000000 0.000000 0.000000 0.461538 0.538462 0.000000 0.000000 0.410256 0.589744 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.358974 0.641026 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWSCMMAS MEME-5 regular expression -------------------------------------------------------------------------------- C[AT][GC]C[CA][CA]A[GC] -------------------------------------------------------------------------------- Time 17.73 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:176855152-176855232 1.67e-02 62_[+2(2.60e-05)]_10 chr3:36885323-36885403 2.75e-01 80 chr4:52762127-52762207 3.16e-02 57_[+1(7.72e-05)]_15 chr11:124044858-12404493 7.27e-02 37_[+1(9.23e-05)]_35 chr12:123460583-12346066 7.16e-01 80 chr2:122385235-122385315 5.40e-03 80 chr4:39027541-39027621 1.86e-01 80 chr6:157638825-157638905 4.61e-01 80 chr3:57777168-57777248 3.33e-01 80 chr3:177391320-177391400 2.39e-02 51_[+5(5.40e-05)]_21 chr5:5558356-5558436 6.41e-03 49_[+1(7.72e-05)]_23 chr6:160931397-160931477 5.50e-02 24_[+1(3.04e-05)]_48 chr2:69062023-69062103 6.14e-02 80 chr10:22331641-22331721 2.23e-03 35_[+1(7.72e-05)]_37 chr6:52590773-52590853 1.41e-03 41_[+1(1.53e-05)]_31 chr4:100644821-100644901 1.48e-02 24_[+1(7.72e-05)]_48 chr1:39424795-39424875 9.90e-04 34_[+1(4.63e-05)]_38 chr4:129491697-129491777 1.79e-02 39_[+3(1.52e-05)]_33 chr11:60666948-60667028 7.35e-02 80 chr4:48901297-48901377 6.54e-05 17_[+4(1.29e-05)]_13_[+1(7.72e-05)]_\ 34 chr5:56108095-56108175 4.09e-03 64_[+1(6.20e-05)]_8 chr16:20314505-20314585 1.40e-04 24_[+1(1.53e-05)]_19_[+4(8.92e-05)]_\ 21 chr7:108129652-108129732 3.52e-02 80 chr2:214116437-214116517 2.15e-02 46_[+1(3.04e-05)]_26 chr9:131930479-131930559 1.54e-04 32_[+1(3.04e-05)]_40 chr2:16817829-16817909 7.45e-02 30_[+1(3.04e-05)]_42 chr3:40408450-40408530 1.02e-05 35_[+1(4.63e-05)]_12_[+3(2.97e-05)]_\ 17 chr10:75692234-75692314 8.12e-02 5_[+1(7.72e-05)]_31_[+1(4.63e-05)]_\ 28 chr1:165806129-165806209 6.46e-03 64_[+2(5.22e-05)]_8 chr7:65746949-65747029 5.94e-03 32_[+1(3.04e-05)]_40 chr1:28798135-28798215 1.34e-02 47_[+1(3.04e-05)]_25 chrX:153713024-153713104 2.46e-02 36_[+1(3.04e-05)]_36 chr4:123333879-123333959 1.06e-01 39_[+1(3.04e-05)]_33 chr19:41030342-41030422 1.68e-02 80 chr16:75023053-75023133 9.87e-01 80 chr1:175124145-175124225 2.12e-01 80 chr2:86444494-86444574 9.04e-02 80 chr11:74517429-74517509 1.22e-01 48_[+1(4.63e-05)]_24 chr7:51030750-51030830 4.02e-07 35_[+1(3.04e-05)]_22_[+4(1.29e-05)]_\ 7 chrX:154975585-154975665 1.16e-01 80 chr12:114050033-11405011 3.48e-02 80 chr4:145934166-145934246 2.11e-02 80 chr15:63712807-63712887 4.00e-02 51_[+1(1.53e-05)]_21 chr1:212948113-212948193 9.28e-02 29_[+1(4.63e-05)]_43 chr20:40272361-40272441 1.56e-03 31_[+1(3.04e-05)]_41 chr7:140059372-140059452 3.27e-01 80 chr16:53259024-53259104 1.70e-02 34_[+1(7.72e-05)]_38 chr11:6749649-6749729 4.35e-02 80 chr7:4672789-4672869 1.03e-01 40_[+1(3.04e-05)]_32 chr8:100694863-100694943 2.26e-04 47_[+1(3.04e-05)]_10_[+5(3.99e-05)]_\ 7 chr10:7998621-7998701 1.09e-01 18_[+1(3.04e-05)]_54 chr10:94404400-94404480 1.56e-01 28_[+1(1.53e-05)]_44 chr16:67275249-67275329 7.03e-03 41_[+1(7.72e-05)]_31 chr20:30148052-30148132 1.15e-01 80 chr7:23102244-23102324 6.69e-04 36_[+1(7.72e-05)]_6_[+5(1.30e-05)]_\ 22 chr2:26685514-26685594 3.08e-02 50_[+1(1.53e-05)]_22 chr1:92056891-92056971 1.38e-02 33_[+1(1.53e-05)]_39 chr6:31526954-31527034 7.55e-03 38_[+1(3.04e-05)]_34 chr15:50528177-50528257 1.62e-01 80 chr7:39504743-39504823 5.68e-04 8_[+2(1.33e-05)]_64 chr11:28365021-28365101 1.91e-02 28_[+1(4.63e-05)]_44 chr15:91229482-91229562 1.23e-01 80 chr7:112063098-112063178 8.53e-04 36_[+1(4.63e-05)]_36 chr1:91748406-91748486 3.21e-01 80 chr3:169647988-169648068 2.49e-03 21_[+1(1.53e-05)]_51 chr5:67700981-67701061 1.28e-01 26_[+1(9.23e-05)]_46 chr7:158411095-158411175 6.51e-02 46_[+5(9.40e-05)]_26 chr1:222414023-222414103 1.43e-01 80 chr7:115872072-115872152 1.12e-02 40_[+1(1.53e-05)]_32 chr8:61186921-61187001 1.65e-02 80 chr1:90406839-90406919 5.02e-02 80 chr8:102388426-102388506 1.25e-01 26_[+1(3.04e-05)]_46 chr8:102150703-102150783 1.01e-01 80 chr16:89086839-89086919 5.98e-02 43_[+1(3.04e-05)]_29 chr12:92472119-92472199 3.16e-03 23_[+1(7.72e-05)]_16_[+3(1.52e-05)]_\ 25 chr17:44026518-44026598 2.38e-02 31_[+1(3.04e-05)]_41 chr4:25921461-25921541 7.17e-02 31_[+1(7.72e-05)]_41 chr15:74935261-74935341 1.45e-02 80 chr6:16342696-16342776 5.42e-02 31_[+1(4.63e-05)]_41 chr7:4778508-4778588 3.28e-03 42_[+1(3.04e-05)]_22_[+2(9.11e-05)] chr12:108876801-10887688 8.42e-05 35_[+2(5.22e-05)]_10_[+1(9.23e-05)]_\ 19 chr19:10923890-10923970 8.24e-04 33_[+1(3.04e-05)]_29_[+4(8.92e-05)]_\ 2 chr17:27990304-27990384 4.77e-03 80 chr21:43377696-43377776 6.83e-02 33_[+1(3.04e-05)]_39 chr16:3747068-3747148 2.75e-02 46_[+3(6.06e-05)]_26 chr1:24247248-24247328 2.21e-01 80 chr4:99715874-99715954 1.58e-02 43_[+1(3.04e-05)]_29 chr21:36834158-36834238 2.11e-02 46_[+1(3.04e-05)]_26 chr9:130844608-130844688 1.69e-02 36_[+1(3.04e-05)]_36 chr7:73189438-73189518 3.62e-02 22_[+1(1.53e-05)]_9_[+1(4.63e-05)]_\ 33 chr16:81175138-81175218 2.92e-03 25_[+1(3.04e-05)]_47 chr7:5795419-5795499 8.94e-02 28_[+1(3.04e-05)]_44 chr12:51009974-51010054 7.51e-01 80 chr1:27472585-27472665 2.19e-02 41_[+1(4.63e-05)]_31 chr8:10676542-10676622 1.59e-03 41_[+1(7.72e-05)]_31 chr4:38468136-38468216 1.02e-04 45_[+1(7.72e-05)]_4_[+5(2.65e-05)]_\ 15 chr12:98793466-98793546 6.04e-02 43_[+1(3.04e-05)]_29 chr1:194627394-194627474 2.08e-02 41_[+1(4.63e-05)]_31 chr4:74465141-74465221 1.63e-01 37_[+1(7.72e-05)]_35 chr3:170224475-170224555 5.98e-02 46_[+1(3.04e-05)]_26 chr11:74811454-74811534 3.17e-02 36_[+1(3.04e-05)]_36 chr6:41934891-41934971 1.16e-02 19_[+1(3.04e-05)]_53 chr10:61473371-61473451 7.70e-02 48_[+1(3.04e-05)]_24 chr7:92676076-92676156 2.99e-04 26_[+3(1.52e-05)]_28_[+4(8.92e-05)]_\ 10 chr6:43278540-43278620 9.64e-02 39_[+1(4.63e-05)]_33 chr2:167249673-167249753 2.54e-01 80 chr10:5121157-5121237 3.90e-01 80 chr3:120361484-120361564 7.24e-03 80 chr12:125399826-12539990 5.74e-02 80 chr20:345696-345776 1.75e-04 53_[+1(4.63e-05)]_19 chr3:121293467-121293547 1.80e-02 38_[+1(1.53e-05)]_34 chr4:89099577-89099657 1.05e-02 45_[+1(7.72e-05)]_27 chr1:67657533-67657613 2.91e-01 80 chr15:98619815-98619895 1.21e-01 80 chr7:87000137-87000217 6.49e-02 35_[+1(3.04e-05)]_37 chr2:183924425-183924505 1.03e-01 36_[+1(3.04e-05)]_36 chr3:23982327-23982407 4.32e-02 80 chr10:81077553-81077633 1.48e-01 46_[+1(3.04e-05)]_26 chr10:76868968-76869048 1.74e-02 49_[+1(7.72e-05)]_23 chr7:129483968-129484048 6.02e-02 27_[+1(3.04e-05)]_45 chr1:51953472-51953552 1.09e-02 80 chr8:101894367-101894447 2.75e-03 37_[+1(3.04e-05)]_35 chr7:106007684-106007764 3.96e-01 80 chr2:169346683-169346763 1.68e-02 80 chr7:158301143-158301223 1.55e-03 35_[+1(7.72e-05)]_37 chr12:1609498-1609578 1.46e-03 70_[+2(3.94e-05)]_2 chr5:141768384-141768464 2.56e-04 45_[+1(4.63e-05)]_17_[+4(1.29e-05)]_\ 2 chr15:49150745-49150825 1.39e-01 80 chr5:68342340-68342420 1.59e-01 43_[+1(7.72e-05)]_29 chr9:130698108-130698188 1.51e-02 80 chr8:129077941-129078021 1.44e-03 25_[+2(9.11e-05)]_2_[+1(3.04e-05)]_\ 37 chr11:66603350-66603430 1.90e-01 42_[+1(3.04e-05)]_30 chr8:141353601-141353681 4.94e-03 80 chr22:37055918-37055998 6.70e-03 37_[+1(1.53e-05)]_35 chr16:89392580-89392660 3.71e-03 37_[+1(7.72e-05)]_35 chr3:151555033-151555113 1.30e-02 44_[+1(4.63e-05)]_28 chr12:122331124-12233120 6.53e-01 80 chr1:46813875-46813955 4.30e-02 23_[+5(2.65e-05)]_49 chr3:14320303-14320383 1.86e-02 40_[+1(1.53e-05)]_32 chr5:149045883-149045963 1.69e-04 40_[+1(3.04e-05)]_9_[+2(6.50e-05)]_\ 15 chr7:139945667-139945747 6.02e-02 6_[+5(2.65e-05)]_66 chr3:45224930-45225010 2.82e-06 [+4(1.29e-05)]_[+4(1.29e-05)]_28_\ [+1(1.53e-05)]_28 chr2:64871600-64871680 6.52e-03 54_[+2(3.94e-05)]_18 chrX:15511387-15511467 7.96e-04 33_[+1(7.72e-05)]_24_[+2(7.73e-05)]_\ 7 chr15:68174862-68174942 3.24e-03 80 chr2:8369862-8369942 1.63e-03 39_[+1(4.63e-05)]_33 chr7:107744568-107744648 1.68e-02 28_[+3(2.97e-05)]_44 chr2:29353306-29353386 8.75e-03 25_[+1(3.04e-05)]_47 chr5:158521987-158522067 6.76e-03 72_[+2(5.22e-05)] chr22:30195316-30195396 3.47e-02 80 chr22:21961966-21962046 2.89e-02 20_[+1(3.04e-05)]_52 chr15:51169309-51169389 2.58e-01 80 chr12:127568056-12756813 2.34e-02 32_[+1(6.20e-05)]_40 chr6:24755650-24755730 5.77e-02 33_[+1(3.04e-05)]_39 chr8:54680924-54681004 2.88e-03 44_[+1(4.63e-05)]_28 chr4:129392888-129392968 4.38e-04 42_[+1(3.04e-05)]_30 chr15:43703194-43703274 1.18e-02 49_[+1(3.04e-05)]_23 chr6:146070885-146070965 7.27e-02 43_[+1(4.63e-05)]_29 chr4:1678514-1678594 8.42e-01 80 chr2:243040804-243040884 2.55e-02 17_[+5(5.40e-05)]_55 chr15:44192275-44192355 4.63e-03 40_[+1(7.72e-05)]_32 chr11:59524501-59524581 3.77e-01 80 chr21:38336855-38336935 1.63e-02 64_[+3(1.52e-05)]_8 chr3:41137355-41137435 7.96e-02 80 chr16:66009152-66009232 3.32e-03 17_[+1(4.63e-05)]_12_[+1(4.63e-05)]_\ 12_[+1(4.63e-05)]_15 chr19:30179335-30179415 4.62e-02 25_[+1(3.04e-05)]_47 chr22:41908941-41909021 7.72e-04 30_[+1(3.04e-05)]_42 chr21:40691969-40692049 1.97e-03 38_[+3(1.52e-05)]_34 chrX:51230673-51230753 1.20e-01 80 chr4:7033825-7033905 1.91e-03 20_[+1(1.53e-05)]_9_[+2(2.60e-05)]_\ 35 chr6:160410336-160410416 6.09e-04 38_[+1(3.04e-05)]_34 chr6:125524731-125524811 1.76e-01 80 chr9:116217698-116217778 3.10e-02 25_[+1(3.04e-05)]_47 chr1:90372332-90372412 6.89e-03 43_[+1(3.04e-05)]_29 chr6:91212679-91212759 4.13e-02 80 chr2:69817596-69817676 1.46e-02 80 chr3:185960407-185960487 3.27e-02 34_[+1(3.04e-05)]_38 chr12:48169413-48169493 7.32e-03 15_[+1(1.53e-05)]_22_[+1(3.04e-05)]_\ 27 chr21:35134159-35134239 2.79e-02 28_[+1(1.53e-05)]_44 chr3:25634162-25634242 1.59e-01 46_[+1(7.72e-05)]_26 chr2:101130211-101130291 6.71e-04 23_[+1(4.63e-05)]_49 chr11:47082524-47082604 1.81e-01 80 chr6:17703720-17703800 3.43e-02 44_[+1(4.63e-05)]_28 chr5:95109619-95109699 1.45e-02 30_[+1(4.63e-05)]_42 chr6:7255361-7255441 1.21e-01 80 chr11:95658338-95658418 8.49e-02 33_[+1(1.53e-05)]_39 chr9:128008816-128008896 7.51e-01 80 chr3:196066788-196066868 1.06e-02 49_[+1(4.63e-05)]_23 chr7:27648831-27648911 1.73e-01 31_[+1(9.23e-05)]_41 chr8:146000702-146000782 3.34e-02 33_[+1(1.53e-05)]_39 chr10:3807419-3807499 4.78e-02 80 chr18:1050179-1050259 1.13e-02 22_[+1(4.63e-05)]_50 chr9:38381100-38381180 6.06e-02 80 chr5:108527133-108527213 1.65e-02 31_[+1(3.04e-05)]_41 chr8:80673290-80673370 6.02e-02 37_[+1(3.04e-05)]_35 chr17:20088423-20088503 5.11e-01 80 chr15:58785330-58785410 2.47e-02 38_[+1(4.63e-05)]_34 chr1:166644583-166644663 2.52e-03 35_[+1(4.63e-05)]_37 chr10:93861185-93861265 1.20e-03 6_[+5(6.70e-05)]_18_[+1(6.20e-05)]_\ 40 chr11:66935717-66935797 1.14e-01 80 chr2:19986329-19986409 7.34e-03 64_[+1(3.04e-05)]_8 chr3:43814880-43814960 1.46e-02 72_[+2(2.60e-05)] chr6:56755530-56755610 2.26e-04 24_[+5(5.40e-05)]_9_[+1(1.53e-05)]_\ 31 chr1:179187240-179187320 1.22e-01 37_[+1(6.20e-05)]_35 chr9:131545897-131545977 9.27e-02 32_[+1(3.04e-05)]_40 chr4:84469767-84469847 1.24e-03 34_[+1(7.72e-05)]_14_[+3(6.06e-05)]_\ 16 chr2:106731877-106731957 1.13e-01 80 chr1:244505099-244505179 4.29e-02 32_[+1(3.04e-05)]_40 chr7:22357413-22357493 6.56e-02 80 chr1:26564186-26564266 1.08e-01 25_[+1(3.04e-05)]_47 chr3:39328875-39328955 4.63e-03 43_[+1(3.04e-05)]_29 chr10:62423156-62423236 5.05e-02 42_[+1(9.23e-05)]_30 chr8:97833179-97833259 1.91e-01 80 chr5:173205847-173205927 2.23e-02 21_[+1(7.72e-05)]_51 chr7:134133566-134133646 2.10e-02 80 chr3:185141120-185141200 3.84e-04 [+5(9.40e-05)]_18_[+1(3.04e-05)]_46 chr4:15151592-15151672 1.11e-05 28_[+4(1.29e-05)]_8_[+1(4.63e-05)]_\ 28 chr1:234569483-234569563 3.07e-03 30_[+3(1.52e-05)]_42 chr1:29045550-29045630 5.05e-03 22_[+1(3.04e-05)]_50 chr8:108508207-108508287 2.92e-02 80 chr7:76018454-76018534 2.56e-02 37_[+1(7.72e-05)]_35 chr2:157287699-157287779 3.17e-03 31_[+1(3.04e-05)]_9_[+2(9.11e-05)]_\ 24 chr19:30181987-30182067 4.42e-03 20_[+1(3.04e-05)]_52 chr15:96935720-96935800 2.91e-02 32_[+1(4.63e-05)]_40 chr7:43612250-43612330 4.98e-06 3_[+2(1.33e-05)]_25_[+1(1.53e-05)]_\ 9_[+3(2.97e-05)]_19 chr1:100515847-100515927 4.76e-01 80 chr1:243585210-243585290 1.87e-02 80 chr16:69760879-69760959 9.22e-03 31_[+1(3.04e-05)]_41 chr1:167389906-167389986 1.84e-02 38_[+1(1.53e-05)]_34 chr10:12264048-12264128 5.32e-03 47_[+1(6.20e-05)]_25 chr1:93498710-93498790 7.87e-02 42_[+1(4.63e-05)]_30 chr1:76138659-76138739 1.55e-02 34_[+1(4.63e-05)]_38 chr6:43931155-43931235 8.61e-04 53_[+1(3.04e-05)]_19 chr2:121621361-121621441 3.25e-05 11_[+5(3.99e-05)]_5_[+1(3.04e-05)]_\ 48 chr14:77385282-77385362 1.34e-04 29_[+1(6.20e-05)]_16_[+2(7.73e-05)]_\ 19 chr2:68598905-68598985 4.57e-03 52_[+1(1.53e-05)]_20 chr16:22043175-22043255 8.09e-02 30_[+1(3.04e-05)]_42 chr17:79881443-79881523 4.43e-04 14_[+5(2.65e-05)]_26_[+1(1.53e-05)]_\ 24 chr1:182555666-182555746 3.78e-01 80 chr5:141977828-141977908 2.30e-03 31_[+1(3.04e-05)]_4_[+1(3.04e-05)]_\ 29 chr5:77822961-77823041 2.14e-01 80 chr17:66756079-66756159 9.55e-03 18_[+1(3.04e-05)]_54 chr12:23569190-23569270 1.02e-03 43_[+1(1.53e-05)]_29 chr1:92021898-92021978 1.66e-01 80 chr17:53167740-53167820 2.91e-03 44_[+1(3.04e-05)]_28 chr5:71800061-71800141 7.68e-02 27_[+1(3.04e-05)]_45 chr3:34098490-34098570 1.15e-01 19_[+1(3.04e-05)]_53 chr13:114988273-11498835 9.44e-02 80 chr1:93388045-93388125 9.87e-02 80 chr15:101677975-10167805 1.76e-02 48_[+5(5.40e-05)]_24 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************