******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/NFATC3.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr17:55234925-55235005 1.0000 80 chr19:2335350-2335430 1.0000 80 chr11:18335700-18335780 1.0000 80 chr1:175190801-175190881 1.0000 80 chr1:198136933-198137013 1.0000 80 chr6:35234923-35235003 1.0000 80 chr2:583287-583367 1.0000 80 chr16:23711953-23712033 1.0000 80 chr9:90150781-90150861 1.0000 80 chr15:44685938-44686018 1.0000 80 chr12:110859006-11085908 1.0000 80 chr11:65235503-65235583 1.0000 80 chr11:61472433-61472513 1.0000 80 chr14:101012889-10101296 1.0000 80 chr8:126447009-126447089 1.0000 80 chr1:230907669-230907749 1.0000 80 chr17:53800446-53800526 1.0000 80 chr2:9198248-9198328 1.0000 80 chr2:39002433-39002513 1.0000 80 chr5:6846555-6846635 1.0000 80 chr9:34523120-34523200 1.0000 80 chr16:640459-640539 1.0000 80 chr2:54785650-54785730 1.0000 80 chr2:152735588-152735668 1.0000 80 chr2:70484581-70484661 1.0000 80 chr2:242088480-242088560 1.0000 80 chr6:2800311-2800391 1.0000 80 chr4:75083241-75083321 1.0000 80 chr14:102512763-10251284 1.0000 80 chrX:139139338-139139418 1.0000 80 chr17:2310371-2310451 1.0000 80 chr1:118149768-118149848 1.0000 80 chr7:44622314-44622394 1.0000 80 chr3:181412965-181413045 1.0000 80 chr4:159969316-159969396 1.0000 80 chr4:2390315-2390395 1.0000 80 chr4:140477326-140477406 1.0000 80 chr10:134298622-13429870 1.0000 80 chr2:37200617-37200697 1.0000 80 chrX:48904917-48904997 1.0000 80 chr17:55015150-55015230 1.0000 80 chr4:183949184-183949264 1.0000 80 chr16:75612790-75612870 1.0000 80 chr11:118209429-11820950 1.0000 80 chr3:93688998-93689078 1.0000 80 chr17:74341557-74341637 1.0000 80 chr6:27517180-27517260 1.0000 80 chr1:27519400-27519480 1.0000 80 chr2:11376542-11376622 1.0000 80 chr19:51109404-51109484 1.0000 80 chr2:112945822-112945902 1.0000 80 chr4:72904770-72904850 1.0000 80 chr10:64576281-64576361 1.0000 80 chr11:102906901-10290698 1.0000 80 chr14:24786687-24786767 1.0000 80 chr6:149068098-149068178 1.0000 80 chr11:33744520-33744600 1.0000 80 chr12:825907-825987 1.0000 80 chr12:54720844-54720924 1.0000 80 chr5:108906326-108906406 1.0000 80 chr3:58885451-58885531 1.0000 80 chr2:129937817-129937897 1.0000 80 chr2:158712391-158712471 1.0000 80 chrX:153402192-153402272 1.0000 80 chr12:133065801-13306588 1.0000 80 chr12:116714847-11671492 1.0000 80 chr17:63088545-63088625 1.0000 80 chr9:131632828-131632908 1.0000 80 chr12:80580635-80580715 1.0000 80 chr12:131892038-13189211 1.0000 80 chr19:18315761-18315841 1.0000 80 chr8:99058147-99058227 1.0000 80 chr2:142887794-142887874 1.0000 80 chr9:123836701-123836781 1.0000 80 chr13:99852370-99852450 1.0000 80 chr19:8488923-8489003 1.0000 80 chr20:52238157-52238237 1.0000 80 chr7:116066523-116066603 1.0000 80 chr7:42909154-42909234 1.0000 80 chr6:111926714-111926794 1.0000 80 chr2:241887607-241887687 1.0000 80 chr4:129098906-129098986 1.0000 80 chr17:21454555-21454635 1.0000 80 chr22:50338994-50339074 1.0000 80 chr17:65989416-65989496 1.0000 80 chr3:39681409-39681489 1.0000 80 chr15:33162809-33162889 1.0000 80 chrX:110924915-110924995 1.0000 80 chr3:69145036-69145116 1.0000 80 chr4:84278527-84278607 1.0000 80 chr15:52640617-52640697 1.0000 80 chr2:223920140-223920220 1.0000 80 chr9:99983962-99984042 1.0000 80 chr4:78739759-78739839 1.0000 80 chr14:51422511-51422591 1.0000 80 chr21:36355522-36355602 1.0000 80 chr5:72746850-72746930 1.0000 80 chr12:53693034-53693114 1.0000 80 chr8:124601666-124601746 1.0000 80 chr3:156966520-156966600 1.0000 80 chr1:38157244-38157324 1.0000 80 chr8:144853273-144853353 1.0000 80 chr7:625170-625250 1.0000 80 chr8:6591988-6592068 1.0000 80 chr2:69878544-69878624 1.0000 80 chr20:31334321-31334401 1.0000 80 chr10:52353933-52354013 1.0000 80 chr15:85177096-85177176 1.0000 80 chr2:38603664-38603744 1.0000 80 chr9:98279228-98279308 1.0000 80 chr17:43227068-43227148 1.0000 80 chr17:21935070-21935150 1.0000 80 chr18:10529648-10529728 1.0000 80 chr18:1513667-1513747 1.0000 80 chr3:186545495-186545575 1.0000 80 chr7:56130257-56130337 1.0000 80 chr1:203598911-203598991 1.0000 80 chr1:236584414-236584494 1.0000 80 chr8:80932850-80932930 1.0000 80 chr5:115420180-115420260 1.0000 80 chr5:149339106-149339186 1.0000 80 chr3:182896653-182896733 1.0000 80 chr19:18705120-18705200 1.0000 80 chr6:30434144-30434224 1.0000 80 chr4:83819999-83820079 1.0000 80 chr9:95571438-95571518 1.0000 80 chr7:107877592-107877672 1.0000 80 chr21:35899345-35899425 1.0000 80 chr5:108763512-108763592 1.0000 80 chr10:21786353-21786433 1.0000 80 chr3:171594648-171594728 1.0000 80 chr12:65073278-65073358 1.0000 80 chr9:138276815-138276895 1.0000 80 chr16:89767320-89767400 1.0000 80 chr14:78471796-78471876 1.0000 80 chr18:60408651-60408731 1.0000 80 chr8:134262052-134262132 1.0000 80 chr5:157375983-157376063 1.0000 80 chr12:93454598-93454678 1.0000 80 chr3:141206600-141206680 1.0000 80 chr12:57294554-57294634 1.0000 80 chr13:97908752-97908832 1.0000 80 chr4:111122063-111122143 1.0000 80 chr15:56657402-56657482 1.0000 80 chr5:145180950-145181030 1.0000 80 chr15:69754966-69755046 1.0000 80 chr1:201682678-201682758 1.0000 80 chr17:37880317-37880397 1.0000 80 chr12:46123691-46123771 1.0000 80 chr1:8963624-8963704 1.0000 80 chr1:192775189-192775269 1.0000 80 chr17:73364521-73364601 1.0000 80 chr3:126191214-126191294 1.0000 80 chr7:43152980-43153060 1.0000 80 chr5:77633978-77634058 1.0000 80 chr16:90039512-90039592 1.0000 80 chr13:44716601-44716681 1.0000 80 chr5:173312758-173312838 1.0000 80 chr7:128417896-128417976 1.0000 80 chr2:172065335-172065415 1.0000 80 chr8:90741728-90741808 1.0000 80 chr21:44494865-44494945 1.0000 80 chr11:47939835-47939915 1.0000 80 chr4:40202783-40202863 1.0000 80 chr7:16685310-16685390 1.0000 80 chrX:3733707-3733787 1.0000 80 chr7:139636780-139636860 1.0000 80 chr9:132199534-132199614 1.0000 80 chr3:66024176-66024256 1.0000 80 chr11:43963650-43963730 1.0000 80 chr7:871478-871558 1.0000 80 chr2:64752514-64752594 1.0000 80 chr3:186545696-186545776 1.0000 80 chr1:227714402-227714482 1.0000 80 chr16:4303340-4303420 1.0000 80 chr4:57848201-57848281 1.0000 80 chrX:195693-195773 1.0000 80 chr1:205400127-205400207 1.0000 80 chr1:27929793-27929873 1.0000 80 chr8:20061372-20061452 1.0000 80 chr3:128598625-128598705 1.0000 80 chr17:18128679-18128759 1.0000 80 chr1:201808291-201808371 1.0000 80 chrX:135930203-135930283 1.0000 80 chr12:95576752-95576832 1.0000 80 chr18:8142280-8142360 1.0000 80 chr10:134385600-13438568 1.0000 80 chr2:46552692-46552772 1.0000 80 chr16:58493427-58493507 1.0000 80 chr3:14443822-14443902 1.0000 80 chr4:25377686-25377766 1.0000 80 chr7:99841229-99841309 1.0000 80 chr17:48520849-48520929 1.0000 80 chr1:154110527-154110607 1.0000 80 chrX:39719750-39719830 1.0000 80 chr1:231175544-231175624 1.0000 80 chr4:109145896-109145976 1.0000 80 chr14:54902372-54902452 1.0000 80 chr17:26662082-26662162 1.0000 80 chr10:104906067-10490614 1.0000 80 chr17:26646372-26646452 1.0000 80 chr1:204380117-204380197 1.0000 80 chr22:42085650-42085730 1.0000 80 chr16:25026795-25026875 1.0000 80 chr7:100895269-100895349 1.0000 80 chr17:67853669-67853749 1.0000 80 chr12:51427359-51427439 1.0000 80 chr22:20305368-20305448 1.0000 80 chr1:224033041-224033121 1.0000 80 chr11:62328240-62328320 1.0000 80 chr1:28696654-28696734 1.0000 80 chr18:2658331-2658411 1.0000 80 chr4:128554227-128554307 1.0000 80 chr12:12595603-12595683 1.0000 80 chr11:6639412-6639492 1.0000 80 chr15:93374957-93375037 1.0000 80 chr1:27925842-27925922 1.0000 80 chr17:71302746-71302826 1.0000 80 chr6:16183584-16183664 1.0000 80 chr5:79141952-79142032 1.0000 80 chr2:234475535-234475615 1.0000 80 chr12:116660313-11666039 1.0000 80 chr1:207405918-207405998 1.0000 80 chr1:37980715-37980795 1.0000 80 chr4:184425267-184425347 1.0000 80 chr18:21067965-21068045 1.0000 80 chr4:57301677-57301757 1.0000 80 chr1:156786633-156786713 1.0000 80 chr1:203895273-203895353 1.0000 80 chr21:11099345-11099425 1.0000 80 chr11:3367154-3367234 1.0000 80 chr1:75968617-75968697 1.0000 80 chr16:3239212-3239292 1.0000 80 chr5:89900839-89900919 1.0000 80 chr11:120039777-12003985 1.0000 80 chr8:124161441-124161521 1.0000 80 chrX:153775657-153775737 1.0000 80 chr16:3200418-3200498 1.0000 80 chr10:11943920-11944000 1.0000 80 chr7:99069361-99069441 1.0000 80 chr1:249133476-249133556 1.0000 80 chr1:39649538-39649618 1.0000 80 chr1:204463636-204463716 1.0000 80 chr17:58042296-58042376 1.0000 80 chr9:125164811-125164891 1.0000 80 chr16:82204171-82204251 1.0000 80 chrX:24690886-24690966 1.0000 80 chr12:71089301-71089381 1.0000 80 chr21:30275971-30276051 1.0000 80 chr17:76971256-76971336 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_NFATC3/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/NFATC3.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.238 C 0.263 G 0.267 T 0.232 Background letter frequencies (from file dataset with add-one prior applied): A 0.238 C 0.263 G 0.267 T 0.232 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGASTCAB MEME-1 width = 8 sites = 81 llr = 689 E-value = 6.1e-062 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGASTCAB MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::a:::a: pos.-specific C :::51a:3 probability G :9:5:::3 matrix T a1::9::4 bits 2.1 * * * 1.9 * * ** 1.7 * * ** 1.5 *** *** Relative 1.3 *** *** Entropy 1.1 *** *** (12.3 bits) 0.8 ******* 0.6 ******* 0.4 ******* 0.2 ******** 0.0 -------- Multilevel TGACTCAT consensus G G sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAB MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:39649538-39649618 67 2.63e-05 CAGGAAGAAG TGACTCAT TTTTCA chr5:89900839-89900919 29 2.63e-05 TGTTTTTTGA TGACTCAT GCAAACGGGA chr5:79141952-79142032 22 2.63e-05 GTCACTCAAG TGAGTCAT ATTTTCCCTG chr15:93374957-93375037 60 2.63e-05 GGGGAAACAA TGAGTCAT TCATGCTGTC chr12:12595603-12595683 44 2.63e-05 TATTAGAAGG TGAGTCAT CTTTTCCACT chr18:2658331-2658411 22 2.63e-05 GTGGAAATGG TGACTCAT TACTCAGATA chr17:67853669-67853749 51 2.63e-05 CCTTCTGGGA TGACTCAt tttgtccata chr14:54902372-54902452 14 2.63e-05 gctgaaagaa tgaCTCAT TTATTCCAGA chr1:154110527-154110607 23 2.63e-05 TTGGGAAATG TGAGTCAT AGGAGAAAAA chr10:134385600-13438568 33 2.63e-05 TAGGAAAAGG TGACTCAT CCAAGAGCCT chr2:64752514-64752594 63 2.63e-05 AGGGAAGAAC TGACTCAT ACATGTAAAT chr7:871478-871558 41 2.63e-05 GAGGAAAGTA TGAGTCAT TCCAAATAAA chr7:128417896-128417976 51 2.63e-05 caggaaaata tgagtcat agccaaaaga chr5:108763512-108763592 13 2.63e-05 GATGGTGAAA TGACTCAT CTCTTCCACT chr8:80932850-80932930 8 2.63e-05 ACGAAGA TGAGTCAT TTTTTCCTCC chr1:236584414-236584494 45 2.63e-05 caggaattta tgagtcat gtatactcag chr7:56130257-56130337 34 2.63e-05 CTGGAGGAAA TGAGTCAT CAGTGATAAG chr18:1513667-1513747 49 2.63e-05 TTCCCTTTCA TGACTCAT TCCTTCCAAT chr3:156966520-156966600 34 2.63e-05 ggggaaactc tgactcat gaatctgatt chr21:36355522-36355602 61 2.63e-05 AACTACTGAA TGAGTCAT TCTTTCCAGA chr4:84278527-84278607 35 2.63e-05 gtggaacttc tgagtcat aggattggta chr7:42909154-42909234 24 2.63e-05 AAGGAGAGGC TGAGTCAT CTTTTCCACC chr20:52238157-52238237 57 2.63e-05 AAGGAAACAC TGAGTCAT TCATGAAATG chr12:80580635-80580715 36 2.63e-05 TGATGCTGAA TGACTCAT CTTTTCCTTT chr14:24786687-24786767 33 2.63e-05 GTGAGAGGGA TGAGTCAT TATTTCCTAG chr1:27519400-27519480 19 2.63e-05 AGTTCTAGGT TGAGTCAT TTCTTCCACC chr2:152735588-152735668 69 2.63e-05 AAACAGACCA TGAGTCAT AGTT chr2:9198248-9198328 63 2.63e-05 ctggaaagtc tgagtcat gagaatcgct chr17:53800446-53800526 18 2.63e-05 TGAATTTGAA TGACTCAT TTTTTCCCCC chr8:126447009-126447089 42 2.63e-05 CAGTGTGGGT TGAGTCAT ATTTTCCGTT chr9:125164811-125164891 69 8.65e-05 TTCTAATCTA TGACTCAC ACTC chr10:11943920-11944000 3 8.65e-05 TG TGACTCAC TTCTTCCACC chr1:75968617-75968697 33 8.65e-05 tttccttatc tgactcac attttccttg chr12:116660313-11666039 47 8.65e-05 CAGGAAAGTC TGACTCAC TAATGATACA chr1:27925842-27925922 5 8.65e-05 AGCC TGACTCAC TGTTTCCCCT chr11:62328240-62328320 39 8.65e-05 ACTAAGTCAC TGACTCAC CCAAGTCTCT chr16:58493427-58493507 12 8.65e-05 gaggggatgg tgactcag cccaattcat chr18:8142280-8142360 51 8.65e-05 TCCCTGACCT TGACTCAC TTCCTGGGGT chr12:95576752-95576832 70 8.65e-05 CTCTTGATTG TGAGTCAG CAC chr7:139636780-139636860 5 8.65e-05 TGAG TGACTCAC TCTTTCCTAT chr5:77633978-77634058 23 8.65e-05 ttgtacttga tgagtcac tttttccctt chr3:126191214-126191294 48 8.65e-05 AGGGAAAACA TGACTCAG AAGCACTCTC chr1:8963624-8963704 36 8.65e-05 ttgaagccag tgactcag aagttccaga chr1:201682678-201682758 26 8.65e-05 GGCTCTGCTG TGACTCAG AATTTCCCTT chr12:57294554-57294634 41 8.65e-05 actccgtgca tgactcac agtttccctt chr18:60408651-60408731 32 8.65e-05 GGGGAAAAGA TGAGTCAC CAGATCCTCT chr3:171594648-171594728 15 8.65e-05 TCTTCATAAA TGAGTCAC TCTTTCCAAG chr4:83819999-83820079 4 8.65e-05 tta tgactcac caattccact chr12:53693034-53693114 34 8.65e-05 ATGGAAATGA TGAGTCAG AAGATTCAGC chr15:33162809-33162889 12 8.65e-05 ACGTCACAGC TGAGTCAG AATTTCCACT chr4:129098906-129098986 46 8.65e-05 ttatctcttt tgactcag catttccact chr7:116066523-116066603 31 8.65e-05 CGAGGATGTG TGACTCAG AAATTCCACT chr2:112945822-112945902 68 8.65e-05 CTGGAATAAA TGAGTCAG AGAAC chr2:11376542-11376622 35 8.65e-05 ATGGAAAGAA TGAGTCAC TGGTAGCCAT chr3:93688998-93689078 30 8.65e-05 GAGGAAAATA TGAGTCAG TAGTGTCTAG chr16:75612790-75612870 49 8.65e-05 GTAATTAAAA TGACTCAC ACTTTCCATT chr4:183949184-183949264 31 8.65e-05 TGTGATTGTG TGAGTCAG TTCTTCCTAT chr4:75083241-75083321 33 8.65e-05 ATATTGGGAA TGACTCAG ATTTTCCGTA chr6:2800311-2800391 46 8.65e-05 aaggaacttc tgagtcac ttaatccaat chr11:18335700-18335780 19 8.65e-05 cagtgtgcta tgactcag ctatgatgcc chr8:124161441-124161521 47 1.09e-04 CCAGTTCAAA TTAGTCAT TGGTGATTAG chr17:63088545-63088625 26 1.09e-04 ttctaacgtg ttagtcat tctttccatt chr2:172065335-172065415 35 1.66e-04 aaatgcactt tgactcaa caattccact chr5:145180950-145181030 41 1.66e-04 CATATAAGGA TGACTCAA GTTTTCCTTC chr14:78471796-78471876 26 1.66e-04 TGCTGAGTGA TGACTCAA TTCTCCCATT chr8:99058147-99058227 21 1.66e-04 gaggctgcag tgagccat gatcgcgcca chr1:249133476-249133556 43 2.18e-04 GTTAAGCCCC TTACTCAG AGTCGCTCTT chr1:207405918-207405998 51 2.18e-04 ggcagagaga ttagtcac attttccaga chr12:51427359-51427439 3 2.18e-04 ac ttactcag gaggctgagg chr10:52353933-52354013 46 2.18e-04 CTGGAACATA TTAGTCAC ACGACATCAG chr8:6591988-6592068 34 2.18e-04 atcataaagc ttagtcac gttttccagt chr7:99841229-99841309 18 2.45e-04 gtttccattc tgagacat gcacccttta chr11:102906901-10290698 40 2.45e-04 TTTAAGAGAA TGACACAT ATTTTCCACT chr1:201808291-201808371 38 3.14e-04 attacaggcg tgagccac tgcgcccagc chr17:73364521-73364601 64 3.14e-04 attataggcg tgacccac tgcgtcagg chr19:18705120-18705200 26 3.14e-04 GCGTGCTTCT TGAGCCAG CCCAGGAACT chrX:110924915-110924995 17 3.14e-04 CGCCGGCGTC TGAGCCAG CCGAGCTCGC chr17:21454555-21454635 1 3.14e-04 . TGACCCAG GCTGTTGGAG chr17:74341557-74341637 50 3.14e-04 gaggatcacc tgagccag ggaaggtcat chr12:71089301-71089381 32 3.75e-04 ACGGAAAAAC TGACACAG GACTATGAAG chr11:3367154-3367234 26 3.75e-04 TCAAACCAGA TGACACAG AACTCAAATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAB MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:39649538-39649618 2.6e-05 66_[+1]_6 chr5:89900839-89900919 2.6e-05 28_[+1]_44 chr5:79141952-79142032 2.6e-05 21_[+1]_51 chr15:93374957-93375037 2.6e-05 59_[+1]_13 chr12:12595603-12595683 2.6e-05 43_[+1]_29 chr18:2658331-2658411 2.6e-05 21_[+1]_51 chr17:67853669-67853749 2.6e-05 50_[+1]_22 chr14:54902372-54902452 2.6e-05 13_[+1]_59 chr1:154110527-154110607 2.6e-05 22_[+1]_50 chr10:134385600-13438568 2.6e-05 32_[+1]_40 chr2:64752514-64752594 2.6e-05 62_[+1]_10 chr7:871478-871558 2.6e-05 40_[+1]_32 chr7:128417896-128417976 2.6e-05 50_[+1]_22 chr5:108763512-108763592 2.6e-05 12_[+1]_60 chr8:80932850-80932930 2.6e-05 7_[+1]_65 chr1:236584414-236584494 2.6e-05 44_[+1]_28 chr7:56130257-56130337 2.6e-05 33_[+1]_39 chr18:1513667-1513747 2.6e-05 48_[+1]_24 chr3:156966520-156966600 2.6e-05 33_[+1]_39 chr21:36355522-36355602 2.6e-05 60_[+1]_12 chr4:84278527-84278607 2.6e-05 34_[+1]_38 chr7:42909154-42909234 2.6e-05 23_[+1]_49 chr20:52238157-52238237 2.6e-05 56_[+1]_16 chr12:80580635-80580715 2.6e-05 35_[+1]_37 chr14:24786687-24786767 2.6e-05 32_[+1]_40 chr1:27519400-27519480 2.6e-05 18_[+1]_54 chr2:152735588-152735668 2.6e-05 68_[+1]_4 chr2:9198248-9198328 2.6e-05 62_[+1]_10 chr17:53800446-53800526 2.6e-05 17_[+1]_55 chr8:126447009-126447089 2.6e-05 41_[+1]_31 chr9:125164811-125164891 8.6e-05 68_[+1]_4 chr10:11943920-11944000 8.6e-05 2_[+1]_70 chr1:75968617-75968697 8.6e-05 32_[+1]_40 chr12:116660313-11666039 8.6e-05 46_[+1]_26 chr1:27925842-27925922 8.6e-05 4_[+1]_68 chr11:62328240-62328320 8.6e-05 38_[+1]_34 chr16:58493427-58493507 8.6e-05 11_[+1]_61 chr18:8142280-8142360 8.6e-05 50_[+1]_22 chr12:95576752-95576832 8.6e-05 69_[+1]_3 chr7:139636780-139636860 8.6e-05 4_[+1]_68 chr5:77633978-77634058 8.6e-05 22_[+1]_50 chr3:126191214-126191294 8.6e-05 47_[+1]_25 chr1:8963624-8963704 8.6e-05 35_[+1]_37 chr1:201682678-201682758 8.6e-05 25_[+1]_47 chr12:57294554-57294634 8.6e-05 40_[+1]_32 chr18:60408651-60408731 8.6e-05 31_[+1]_41 chr3:171594648-171594728 8.6e-05 14_[+1]_58 chr4:83819999-83820079 8.6e-05 3_[+1]_69 chr12:53693034-53693114 8.6e-05 33_[+1]_39 chr15:33162809-33162889 8.6e-05 11_[+1]_61 chr4:129098906-129098986 8.6e-05 45_[+1]_27 chr7:116066523-116066603 8.6e-05 30_[+1]_42 chr2:112945822-112945902 8.6e-05 67_[+1]_5 chr2:11376542-11376622 8.6e-05 34_[+1]_38 chr3:93688998-93689078 8.6e-05 29_[+1]_43 chr16:75612790-75612870 8.6e-05 48_[+1]_24 chr4:183949184-183949264 8.6e-05 30_[+1]_42 chr4:75083241-75083321 8.6e-05 32_[+1]_40 chr6:2800311-2800391 8.6e-05 45_[+1]_27 chr11:18335700-18335780 8.6e-05 18_[+1]_54 chr8:124161441-124161521 0.00011 46_[+1]_26 chr17:63088545-63088625 0.00011 25_[+1]_47 chr2:172065335-172065415 0.00017 34_[+1]_38 chr5:145180950-145181030 0.00017 40_[+1]_32 chr14:78471796-78471876 0.00017 25_[+1]_47 chr8:99058147-99058227 0.00017 20_[+1]_52 chr1:249133476-249133556 0.00022 42_[+1]_30 chr1:207405918-207405998 0.00022 50_[+1]_22 chr12:51427359-51427439 0.00022 2_[+1]_70 chr10:52353933-52354013 0.00022 45_[+1]_27 chr8:6591988-6592068 0.00022 33_[+1]_39 chr7:99841229-99841309 0.00025 17_[+1]_55 chr11:102906901-10290698 0.00025 39_[+1]_33 chr1:201808291-201808371 0.00031 37_[+1]_35 chr17:73364521-73364601 0.00031 63_[+1]_9 chr19:18705120-18705200 0.00031 25_[+1]_47 chrX:110924915-110924995 0.00031 16_[+1]_56 chr17:21454555-21454635 0.00031 [+1]_72 chr17:74341557-74341637 0.00031 49_[+1]_23 chr12:71089301-71089381 0.00038 31_[+1]_41 chr11:3367154-3367234 0.00038 25_[+1]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAB MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGASTCAB width=8 seqs=81 chr1:39649538-39649618 ( 67) TGACTCAT 1 chr5:89900839-89900919 ( 29) TGACTCAT 1 chr5:79141952-79142032 ( 22) TGAGTCAT 1 chr15:93374957-93375037 ( 60) TGAGTCAT 1 chr12:12595603-12595683 ( 44) TGAGTCAT 1 chr18:2658331-2658411 ( 22) TGACTCAT 1 chr17:67853669-67853749 ( 51) TGACTCAT 1 chr14:54902372-54902452 ( 14) TGACTCAT 1 chr1:154110527-154110607 ( 23) TGAGTCAT 1 chr10:134385600-13438568 ( 33) TGACTCAT 1 chr2:64752514-64752594 ( 63) TGACTCAT 1 chr7:871478-871558 ( 41) TGAGTCAT 1 chr7:128417896-128417976 ( 51) TGAGTCAT 1 chr5:108763512-108763592 ( 13) TGACTCAT 1 chr8:80932850-80932930 ( 8) TGAGTCAT 1 chr1:236584414-236584494 ( 45) TGAGTCAT 1 chr7:56130257-56130337 ( 34) TGAGTCAT 1 chr18:1513667-1513747 ( 49) TGACTCAT 1 chr3:156966520-156966600 ( 34) TGACTCAT 1 chr21:36355522-36355602 ( 61) TGAGTCAT 1 chr4:84278527-84278607 ( 35) TGAGTCAT 1 chr7:42909154-42909234 ( 24) TGAGTCAT 1 chr20:52238157-52238237 ( 57) TGAGTCAT 1 chr12:80580635-80580715 ( 36) TGACTCAT 1 chr14:24786687-24786767 ( 33) TGAGTCAT 1 chr1:27519400-27519480 ( 19) TGAGTCAT 1 chr2:152735588-152735668 ( 69) TGAGTCAT 1 chr2:9198248-9198328 ( 63) TGAGTCAT 1 chr17:53800446-53800526 ( 18) TGACTCAT 1 chr8:126447009-126447089 ( 42) TGAGTCAT 1 chr9:125164811-125164891 ( 69) TGACTCAC 1 chr10:11943920-11944000 ( 3) TGACTCAC 1 chr1:75968617-75968697 ( 33) TGACTCAC 1 chr12:116660313-11666039 ( 47) TGACTCAC 1 chr1:27925842-27925922 ( 5) TGACTCAC 1 chr11:62328240-62328320 ( 39) TGACTCAC 1 chr16:58493427-58493507 ( 12) TGACTCAG 1 chr18:8142280-8142360 ( 51) TGACTCAC 1 chr12:95576752-95576832 ( 70) TGAGTCAG 1 chr7:139636780-139636860 ( 5) TGACTCAC 1 chr5:77633978-77634058 ( 23) TGAGTCAC 1 chr3:126191214-126191294 ( 48) TGACTCAG 1 chr1:8963624-8963704 ( 36) TGACTCAG 1 chr1:201682678-201682758 ( 26) TGACTCAG 1 chr12:57294554-57294634 ( 41) TGACTCAC 1 chr18:60408651-60408731 ( 32) TGAGTCAC 1 chr3:171594648-171594728 ( 15) TGAGTCAC 1 chr4:83819999-83820079 ( 4) TGACTCAC 1 chr12:53693034-53693114 ( 34) TGAGTCAG 1 chr15:33162809-33162889 ( 12) TGAGTCAG 1 chr4:129098906-129098986 ( 46) TGACTCAG 1 chr7:116066523-116066603 ( 31) TGACTCAG 1 chr2:112945822-112945902 ( 68) TGAGTCAG 1 chr2:11376542-11376622 ( 35) TGAGTCAC 1 chr3:93688998-93689078 ( 30) TGAGTCAG 1 chr16:75612790-75612870 ( 49) TGACTCAC 1 chr4:183949184-183949264 ( 31) TGAGTCAG 1 chr4:75083241-75083321 ( 33) TGACTCAG 1 chr6:2800311-2800391 ( 46) TGAGTCAC 1 chr11:18335700-18335780 ( 19) TGACTCAG 1 chr8:124161441-124161521 ( 47) TTAGTCAT 1 chr17:63088545-63088625 ( 26) TTAGTCAT 1 chr2:172065335-172065415 ( 35) TGACTCAA 1 chr5:145180950-145181030 ( 41) TGACTCAA 1 chr14:78471796-78471876 ( 26) TGACTCAA 1 chr8:99058147-99058227 ( 21) TGAGCCAT 1 chr1:249133476-249133556 ( 43) TTACTCAG 1 chr1:207405918-207405998 ( 51) TTAGTCAC 1 chr12:51427359-51427439 ( 3) TTACTCAG 1 chr10:52353933-52354013 ( 46) TTAGTCAC 1 chr8:6591988-6592068 ( 34) TTAGTCAC 1 chr7:99841229-99841309 ( 18) TGAGACAT 1 chr11:102906901-10290698 ( 40) TGACACAT 1 chr1:201808291-201808371 ( 38) TGAGCCAC 1 chr17:73364521-73364601 ( 64) TGACCCAC 1 chr19:18705120-18705200 ( 26) TGAGCCAG 1 chrX:110924915-110924995 ( 17) TGAGCCAG 1 chr17:21454555-21454635 ( 1) TGACCCAG 1 chr17:74341557-74341637 ( 50) TGAGCCAG 1 chr12:71089301-71089381 ( 32) TGACACAG 1 chr11:3367154-3367234 ( 26) TGACACAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAB MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.29533 E= 6.1e-062 -1298 -1298 -1298 211 -1298 -1298 178 -143 207 -1298 -1298 -1298 -1298 95 89 -1298 -227 -160 -1298 189 -1298 193 -1298 -1298 207 -1298 -1298 -1298 -269 -2 3 89 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAB MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 81 E= 6.1e-062 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.913580 0.086420 1.000000 0.000000 0.000000 0.000000 0.000000 0.506173 0.493827 0.000000 0.049383 0.086420 0.000000 0.864198 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.037037 0.259259 0.271605 0.432099 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAB MEME-1 regular expression -------------------------------------------------------------------------------- TGA[CG]TCA[TGC] -------------------------------------------------------------------------------- Time 5.08 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTCCATT MEME-2 width = 8 sites = 26 llr = 261 E-value = 1.3e-015 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTCCATT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::7:: pos.-specific C :::aa22: probability G :::::::: matrix T aaa::18a bits 2.1 *** * 1.9 ***** * 1.7 ***** * 1.5 ***** * Relative 1.3 ***** ** Entropy 1.1 ***** ** (14.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTCCATT consensus CC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCATT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:16183584-16183664 16 1.11e-05 TTTTATGATT TTTCCATT ACCACACCAA chr12:12595603-12595683 8 1.11e-05 GGGTATC TTTCCATT AGATAATGAC chr7:99841229-99841309 9 1.11e-05 actcagcg tttccatt ctgagacatg chr2:46552692-46552772 34 1.11e-05 CTAGTCAACC TTTCCATT GCTTAGCCGG chr8:20061372-20061452 16 1.11e-05 CTGGCCTTTC TTTCCATT GCCTACTCCG chr4:57848201-57848281 31 1.11e-05 tctcatccat tttccatt gtttcagtta chr1:227714402-227714482 54 1.11e-05 gatgttgaat tttccatt cctgagttac chr2:223920140-223920220 29 1.11e-05 CTTGTCACAT TTTCCATT GCTTAATCCT chr17:63088545-63088625 36 1.11e-05 ttagtcattc tttccatt tgcatctttg chr2:129937817-129937897 38 1.11e-05 agggtcattt tttccatt caaagatcta chr3:58885451-58885531 54 1.11e-05 ccctgctttt tttccatt ctctgcaggt chr11:33744520-33744600 38 1.11e-05 ACTTTGTAAG TTTCCATT ACGTGAATGC chr16:75612790-75612870 59 1.11e-05 TGACTCACAC TTTCCATT GCGGAAGAAA chr9:90150781-90150861 48 1.11e-05 TGCTTTTTAT TTTCCATT TGCTCATCGG chr5:77633978-77634058 33 2.33e-05 tgagtcactt tttccctt gctgctttct chr1:201682678-201682758 36 2.33e-05 TGACTCAGAA TTTCCCTT GCTGGCTCCT chr12:57294554-57294634 51 2.33e-05 tgactcacag tttccctt gaaggcgtgg chr18:1513667-1513747 38 2.33e-05 CACTCTGTAT TTTCCCTT TCATGACTCA chr21:35899345-35899425 63 3.58e-05 TGCAGCATAG TTTCCACT GGTAGTAATT chr15:33162809-33162889 22 3.58e-05 TGAGTCAGAA TTTCCACT GTGATGATTA chr4:129098906-129098986 56 3.58e-05 tgactcagca tttccact cagatataaa chr11:102906901-10290698 50 3.58e-05 TGACACATAT TTTCCACT ACAGAAGATA chr12:80580635-80580715 46 4.66e-05 TGACTCATCT TTTCCTTT GGGTTAGAAT chr17:55015150-55015230 38 4.66e-05 AGGTCAAAAT TTTCCTTT GGTCAATGTT chr1:27925842-27925922 15 6.05e-05 TGACTCACTG TTTCCCCT CCTCTCTCGC chr2:37200617-37200697 65 6.05e-05 CTCTCCCAGA TTTCCCCT CAGCTGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCATT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:16183584-16183664 1.1e-05 15_[+2]_57 chr12:12595603-12595683 1.1e-05 7_[+2]_65 chr7:99841229-99841309 1.1e-05 8_[+2]_64 chr2:46552692-46552772 1.1e-05 33_[+2]_39 chr8:20061372-20061452 1.1e-05 15_[+2]_57 chr4:57848201-57848281 1.1e-05 30_[+2]_42 chr1:227714402-227714482 1.1e-05 53_[+2]_19 chr2:223920140-223920220 1.1e-05 28_[+2]_44 chr17:63088545-63088625 1.1e-05 35_[+2]_37 chr2:129937817-129937897 1.1e-05 37_[+2]_35 chr3:58885451-58885531 1.1e-05 53_[+2]_19 chr11:33744520-33744600 1.1e-05 37_[+2]_35 chr16:75612790-75612870 1.1e-05 58_[+2]_14 chr9:90150781-90150861 1.1e-05 47_[+2]_25 chr5:77633978-77634058 2.3e-05 32_[+2]_40 chr1:201682678-201682758 2.3e-05 35_[+2]_37 chr12:57294554-57294634 2.3e-05 50_[+2]_22 chr18:1513667-1513747 2.3e-05 37_[+2]_35 chr21:35899345-35899425 3.6e-05 62_[+2]_10 chr15:33162809-33162889 3.6e-05 21_[+2]_51 chr4:129098906-129098986 3.6e-05 55_[+2]_17 chr11:102906901-10290698 3.6e-05 49_[+2]_23 chr12:80580635-80580715 4.7e-05 45_[+2]_27 chr17:55015150-55015230 4.7e-05 37_[+2]_35 chr1:27925842-27925922 6e-05 14_[+2]_58 chr2:37200617-37200697 6e-05 64_[+2]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCATT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTCCATT width=8 seqs=26 chr6:16183584-16183664 ( 16) TTTCCATT 1 chr12:12595603-12595683 ( 8) TTTCCATT 1 chr7:99841229-99841309 ( 9) TTTCCATT 1 chr2:46552692-46552772 ( 34) TTTCCATT 1 chr8:20061372-20061452 ( 16) TTTCCATT 1 chr4:57848201-57848281 ( 31) TTTCCATT 1 chr1:227714402-227714482 ( 54) TTTCCATT 1 chr2:223920140-223920220 ( 29) TTTCCATT 1 chr17:63088545-63088625 ( 36) TTTCCATT 1 chr2:129937817-129937897 ( 38) TTTCCATT 1 chr3:58885451-58885531 ( 54) TTTCCATT 1 chr11:33744520-33744600 ( 38) TTTCCATT 1 chr16:75612790-75612870 ( 59) TTTCCATT 1 chr9:90150781-90150861 ( 48) TTTCCATT 1 chr5:77633978-77634058 ( 33) TTTCCCTT 1 chr1:201682678-201682758 ( 36) TTTCCCTT 1 chr12:57294554-57294634 ( 51) TTTCCCTT 1 chr18:1513667-1513747 ( 38) TTTCCCTT 1 chr21:35899345-35899425 ( 63) TTTCCACT 1 chr15:33162809-33162889 ( 22) TTTCCACT 1 chr4:129098906-129098986 ( 56) TTTCCACT 1 chr11:102906901-10290698 ( 50) TTTCCACT 1 chr12:80580635-80580715 ( 46) TTTCCTTT 1 chr17:55015150-55015230 ( 38) TTTCCTTT 1 chr1:27925842-27925922 ( 15) TTTCCCCT 1 chr2:37200617-37200697 ( 65) TTTCCCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCATT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.6186 E= 1.3e-015 -1134 -1134 -1134 210 -1134 -1134 -1134 210 -1134 -1134 -1134 210 -1134 193 -1134 -1134 -1134 193 -1134 -1134 154 -19 -1134 -159 -1134 -19 -1134 173 -1134 -1134 -1134 210 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCATT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 1.3e-015 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.692308 0.230769 0.000000 0.076923 0.000000 0.230769 0.000000 0.769231 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCATT MEME-2 regular expression -------------------------------------------------------------------------------- TTTCC[AC][TC]T -------------------------------------------------------------------------------- Time 8.82 secs. ******************************************************************************** ******************************************************************************** MOTIF GRGCTCGS MEME-3 width = 8 sites = 69 llr = 506 E-value = 9.0e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif GRGCTCGS MEME-3 Description -------------------------------------------------------------------------------- Simplified A 26::::2: pos.-specific C :::a2a:5 probability G 84a:::65 matrix T ::::8:1: bits 2.1 1.9 ** 1.7 ** * 1.5 **** Relative 1.3 **** Entropy 1.1 ****** (10.6 bits) 0.8 ****** * 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAGCTCGC consensus G AG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRGCTCGS MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:37980715-37980795 56 1.91e-05 gactccggaa gagctcgc gaatccattt chr2:234475535-234475615 29 1.91e-05 CGGGCAAGGT GAGCTCGC TTACAAGTCC chr19:18705120-18705200 48 1.91e-05 GGAACTGCTT GAGCTCGC GCCGCACCGG chr5:115420180-115420260 5 1.91e-05 GGGG GAGCTCGC TCAAATGCCT chrX:110924915-110924995 27 1.91e-05 TGAGCCAGCC GAGCTCGC CTCAGAGCCC chr2:142887794-142887874 44 1.91e-05 GGAGAACCTG GAGCTCGC AAAAGCTCGC chr16:640459-640539 36 1.91e-05 GCTGGGCACG GAGCTCGC CCTCGGCCCG chrX:24690886-24690966 5 3.85e-05 GGAG GAGCTCGG AGTGTCCCAG chr7:16685310-16685390 64 3.85e-05 GACAGCGGGC GAGCTCGG GCGAGCCAG chr6:30434144-30434224 24 3.85e-05 AGGCCCGGGC GAGCTCGG GCGGGACCGG chr12:133065801-13306588 54 3.85e-05 GGGCCCCTCC GAGCTCGG CCTGTCCTGG chr11:61472433-61472513 48 3.85e-05 GGGCTCGCCT GAGCTCGG GACTGGGCTG chr16:3200418-3200498 44 6.00e-05 GGGGTAGGGC GGGCTCGC CAGGGCTCGA chr1:224033041-224033121 40 6.00e-05 AGTGGCTGCT GGGCTCGC GGGCGGCTCG chr4:109145896-109145976 48 6.00e-05 GCTGCTTCTT GGGCTCGC CACACACTGT chr7:43152980-43153060 61 6.00e-05 GCCTCCGCAC GGGCTCGC CGGTGCTCGC chr1:38157244-38157324 73 6.00e-05 CGGCTCGGCG GGGCTCGC chr9:99983962-99984042 23 6.00e-05 GGGTTCTCCT GGGCTCGC GCAGGACATC chr6:111926714-111926794 37 6.00e-05 TAACCCGGCG GGGCTCGC TGGCCTGAAA chr13:99852370-99852450 56 6.00e-05 TCGCTCCGCC GGGCTCGC CGGGCCGGGG chr4:140477326-140477406 49 6.00e-05 GCGAGCTCTG GGGCTCGC GAGTTTggag chr3:181412965-181413045 45 6.00e-05 AGGTTCTCCT GGGCTCGC CGTTTCGCCC chrX:3733707-3733787 34 8.18e-05 CAGCTCGGCT GGGCTCGG AGTCCGCTCC chr16:90039512-90039592 55 8.18e-05 GTGTCCTCCT GGGCTCGG CGGCGTTCGg chr17:65989416-65989496 70 8.18e-05 GGATTCTCCG GGGCTCGG AAA chr9:34523120-34523200 30 8.18e-05 acgttcggct gggctcgg ccgggctcgg chr12:825907-825987 54 9.88e-05 CTCACAGCAG GAGCTCAC AGAACTTCCA chr19:51109404-51109484 73 9.88e-05 gggcTGGCGG GAGCTCAC chr4:57301677-57301757 46 1.16e-04 TCGGCCCGTC GAGCTCAG AAGCTCGCGC chr11:43963650-43963730 38 1.16e-04 CCCTTCTTCC GAGCTCAG CTCTGGGGAG chr8:134262052-134262132 60 1.16e-04 GTGGCAGAGC GAGCTCAG CAGGTTGAGC chr15:52640617-52640697 57 1.16e-04 GTAGATATGA GAGCTCAG GAGAGCCTGT chr2:39002433-39002513 8 1.16e-04 ctcgctt gagctcag gagttaagag chr11:47939835-47939915 36 1.72e-04 CTGTTCTGCA AAGCTCGC CTAGCACAAG chr21:44494865-44494945 45 1.72e-04 GCTCGGCGGA AAGCTCGC CAGGCGACCC chr19:18315761-18315841 1 1.89e-04 . AAGCTCGG ATTCAAAGAC chr17:21454555-21454635 16 2.11e-04 CAGGCTGTTG GAGCCCGC GAAGAGGGGG chr17:48520849-48520929 48 2.49e-04 attctctttt gagctctc tttaagcaat chr17:18128679-18128759 67 2.49e-04 GTCCCTTCGC GAGCCCGG CCGAGC chr16:4303340-4303420 4 2.49e-04 ctt gagcccgg aaggtggagg chr2:38603664-38603744 23 2.49e-04 CCCGAAACGC GAGCCCGG GGACAGAGCC chr5:173312758-173312838 50 2.66e-04 gagttctcat gagctctg atggttttat chr17:2310371-2310451 44 2.66e-04 GAGCCCAGTC GAGCTCTG CAGCTAGAGT chr12:116714847-11671492 49 2.85e-04 ACAATCCTCC AGGCTCGC CCCGTTCGCC chr10:134298622-13429870 25 2.85e-04 AGCCTTGGAC AGGCTCGC CTGTGAAACG chr7:100895269-100895349 67 3.05e-04 AGGCTCGGCG AGGCTCGG GGACGG chr10:21786353-21786433 1 3.05e-04 . AGGCTCGG GAAAGCCCGC chr3:182896653-182896733 28 3.05e-04 GGCTCCTCCA AGGCTCGG GCTAagcggc chr17:71302746-71302826 35 3.87e-04 GGGCTCTCTT GGGCTCTC TACTCCTTGT chr12:46123691-46123771 69 3.87e-04 GGGGCGAACG GGGCTCTC CCGC chr15:85177096-85177176 27 3.87e-04 TGACAGCTGC GGGCCCGG CGAGCCGAGC chr17:37880317-37880397 6 4.22e-04 GGTCT GGGCTCTG GTCTCTCTTC chr2:583287-583367 50 4.41e-04 GGACGGTGGC GAGCCCAC GCTTGCCAGG chr4:128554227-128554307 5 4.80e-04 AGAC GAGCTCCC TGGAGACCCC chr5:157375983-157376063 61 4.80e-04 GGAGGAGAGC GAGCCCAG AAGAAAGTAG chr9:95571438-95571518 36 4.80e-04 CGTCCCGCGC GAGCCCAG GAGAACCCGC chr9:98279228-98279308 67 4.80e-04 CCTGCCCGGC GAGCTCCC GCGAGC chr2:241887607-241887687 44 4.80e-04 GTTCTGACCT GAGCCCAG AGGACTTCCC chr9:123836701-123836781 13 4.80e-04 GCGACAGCTG GAGCCCAG GCTGCGTCCG chr6:35234923-35235003 20 5.16e-04 gcaatcatgg aggctcac tgcagcagtg chr1:39649538-39649618 38 5.33e-04 TGTGTGGAAG AGGCTCAG GCCTGTGTTG chr1:8963624-8963704 53 5.33e-04 gaagttccag aggctcag acttgtgact chr7:99069361-99069441 58 5.72e-04 ccgggaggcg gagcttgc agtgagccga chr16:3239212-3239292 42 5.72e-04 TTTCCAAGGC GAGCTTGC AGTGATCGAG chr16:82204171-82204251 60 6.32e-04 CGTGGGTGGC GGGCTCCC TTTGTTCTGG chr12:51427359-51427439 35 6.32e-04 aggaacacat gggcccag gaggcagagg chr1:205400127-205400207 54 6.32e-04 AGAGCCCAGC GAGCTTGG GGGTGGGGCG chr12:131892038-13189211 23 7.26e-04 ctgggcagct cagctcgc ctgagctcgt chr10:64576281-64576361 14 7.26e-04 TCGCGACTTC CAGCTCGC AGGCGGCGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRGCTCGS MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:37980715-37980795 1.9e-05 55_[+3]_17 chr2:234475535-234475615 1.9e-05 28_[+3]_44 chr19:18705120-18705200 1.9e-05 47_[+3]_25 chr5:115420180-115420260 1.9e-05 4_[+3]_68 chrX:110924915-110924995 1.9e-05 26_[+3]_46 chr2:142887794-142887874 1.9e-05 43_[+3]_29 chr16:640459-640539 1.9e-05 35_[+3]_37 chrX:24690886-24690966 3.9e-05 4_[+3]_68 chr7:16685310-16685390 3.9e-05 63_[+3]_9 chr6:30434144-30434224 3.9e-05 23_[+3]_49 chr12:133065801-13306588 3.9e-05 53_[+3]_19 chr11:61472433-61472513 3.9e-05 47_[+3]_25 chr16:3200418-3200498 6e-05 43_[+3]_29 chr1:224033041-224033121 6e-05 39_[+3]_33 chr4:109145896-109145976 6e-05 47_[+3]_25 chr7:43152980-43153060 6e-05 60_[+3]_12 chr1:38157244-38157324 6e-05 72_[+3] chr9:99983962-99984042 6e-05 22_[+3]_50 chr6:111926714-111926794 6e-05 36_[+3]_36 chr13:99852370-99852450 6e-05 55_[+3]_17 chr4:140477326-140477406 6e-05 48_[+3]_24 chr3:181412965-181413045 6e-05 44_[+3]_28 chrX:3733707-3733787 8.2e-05 33_[+3]_39 chr16:90039512-90039592 8.2e-05 54_[+3]_18 chr17:65989416-65989496 8.2e-05 69_[+3]_3 chr9:34523120-34523200 8.2e-05 29_[+3]_43 chr12:825907-825987 9.9e-05 53_[+3]_19 chr19:51109404-51109484 9.9e-05 72_[+3] chr4:57301677-57301757 0.00012 45_[+3]_27 chr11:43963650-43963730 0.00012 37_[+3]_35 chr8:134262052-134262132 0.00012 59_[+3]_13 chr15:52640617-52640697 0.00012 56_[+3]_16 chr2:39002433-39002513 0.00012 7_[+3]_65 chr11:47939835-47939915 0.00017 35_[+3]_37 chr21:44494865-44494945 0.00017 44_[+3]_28 chr19:18315761-18315841 0.00019 [+3]_72 chr17:21454555-21454635 0.00021 15_[+3]_57 chr17:48520849-48520929 0.00025 47_[+3]_25 chr17:18128679-18128759 0.00025 66_[+3]_6 chr16:4303340-4303420 0.00025 3_[+3]_69 chr2:38603664-38603744 0.00025 22_[+3]_50 chr5:173312758-173312838 0.00027 49_[+3]_23 chr17:2310371-2310451 0.00027 43_[+3]_29 chr12:116714847-11671492 0.00029 48_[+3]_24 chr10:134298622-13429870 0.00029 24_[+3]_48 chr7:100895269-100895349 0.0003 66_[+3]_6 chr10:21786353-21786433 0.0003 [+3]_72 chr3:182896653-182896733 0.0003 27_[+3]_45 chr17:71302746-71302826 0.00039 34_[+3]_38 chr12:46123691-46123771 0.00039 68_[+3]_4 chr15:85177096-85177176 0.00039 26_[+3]_46 chr17:37880317-37880397 0.00042 5_[+3]_67 chr2:583287-583367 0.00044 49_[+3]_23 chr4:128554227-128554307 0.00048 4_[+3]_68 chr5:157375983-157376063 0.00048 60_[+3]_12 chr9:95571438-95571518 0.00048 35_[+3]_37 chr9:98279228-98279308 0.00048 66_[+3]_6 chr2:241887607-241887687 0.00048 43_[+3]_29 chr9:123836701-123836781 0.00048 12_[+3]_60 chr6:35234923-35235003 0.00052 19_[+3]_53 chr1:39649538-39649618 0.00053 37_[+3]_35 chr1:8963624-8963704 0.00053 52_[+3]_20 chr7:99069361-99069441 0.00057 57_[+3]_15 chr16:3239212-3239292 0.00057 41_[+3]_31 chr16:82204171-82204251 0.00063 59_[+3]_13 chr12:51427359-51427439 0.00063 34_[+3]_38 chr1:205400127-205400207 0.00063 53_[+3]_19 chr12:131892038-13189211 0.00073 22_[+3]_50 chr10:64576281-64576361 0.00073 13_[+3]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRGCTCGS MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GRGCTCGS width=8 seqs=69 chr1:37980715-37980795 ( 56) GAGCTCGC 1 chr2:234475535-234475615 ( 29) GAGCTCGC 1 chr19:18705120-18705200 ( 48) GAGCTCGC 1 chr5:115420180-115420260 ( 5) GAGCTCGC 1 chrX:110924915-110924995 ( 27) GAGCTCGC 1 chr2:142887794-142887874 ( 44) GAGCTCGC 1 chr16:640459-640539 ( 36) GAGCTCGC 1 chrX:24690886-24690966 ( 5) GAGCTCGG 1 chr7:16685310-16685390 ( 64) GAGCTCGG 1 chr6:30434144-30434224 ( 24) GAGCTCGG 1 chr12:133065801-13306588 ( 54) GAGCTCGG 1 chr11:61472433-61472513 ( 48) GAGCTCGG 1 chr16:3200418-3200498 ( 44) GGGCTCGC 1 chr1:224033041-224033121 ( 40) GGGCTCGC 1 chr4:109145896-109145976 ( 48) GGGCTCGC 1 chr7:43152980-43153060 ( 61) GGGCTCGC 1 chr1:38157244-38157324 ( 73) GGGCTCGC 1 chr9:99983962-99984042 ( 23) GGGCTCGC 1 chr6:111926714-111926794 ( 37) GGGCTCGC 1 chr13:99852370-99852450 ( 56) GGGCTCGC 1 chr4:140477326-140477406 ( 49) GGGCTCGC 1 chr3:181412965-181413045 ( 45) GGGCTCGC 1 chrX:3733707-3733787 ( 34) GGGCTCGG 1 chr16:90039512-90039592 ( 55) GGGCTCGG 1 chr17:65989416-65989496 ( 70) GGGCTCGG 1 chr9:34523120-34523200 ( 30) GGGCTCGG 1 chr12:825907-825987 ( 54) GAGCTCAC 1 chr19:51109404-51109484 ( 73) GAGCTCAC 1 chr4:57301677-57301757 ( 46) GAGCTCAG 1 chr11:43963650-43963730 ( 38) GAGCTCAG 1 chr8:134262052-134262132 ( 60) GAGCTCAG 1 chr15:52640617-52640697 ( 57) GAGCTCAG 1 chr2:39002433-39002513 ( 8) GAGCTCAG 1 chr11:47939835-47939915 ( 36) AAGCTCGC 1 chr21:44494865-44494945 ( 45) AAGCTCGC 1 chr19:18315761-18315841 ( 1) AAGCTCGG 1 chr17:21454555-21454635 ( 16) GAGCCCGC 1 chr17:48520849-48520929 ( 48) GAGCTCTC 1 chr17:18128679-18128759 ( 67) GAGCCCGG 1 chr16:4303340-4303420 ( 4) GAGCCCGG 1 chr2:38603664-38603744 ( 23) GAGCCCGG 1 chr5:173312758-173312838 ( 50) GAGCTCTG 1 chr17:2310371-2310451 ( 44) GAGCTCTG 1 chr12:116714847-11671492 ( 49) AGGCTCGC 1 chr10:134298622-13429870 ( 25) AGGCTCGC 1 chr7:100895269-100895349 ( 67) AGGCTCGG 1 chr10:21786353-21786433 ( 1) AGGCTCGG 1 chr3:182896653-182896733 ( 28) AGGCTCGG 1 chr17:71302746-71302826 ( 35) GGGCTCTC 1 chr12:46123691-46123771 ( 69) GGGCTCTC 1 chr15:85177096-85177176 ( 27) GGGCCCGG 1 chr17:37880317-37880397 ( 6) GGGCTCTG 1 chr2:583287-583367 ( 50) GAGCCCAC 1 chr4:128554227-128554307 ( 5) GAGCTCCC 1 chr5:157375983-157376063 ( 61) GAGCCCAG 1 chr9:95571438-95571518 ( 36) GAGCCCAG 1 chr9:98279228-98279308 ( 67) GAGCTCCC 1 chr2:241887607-241887687 ( 44) GAGCCCAG 1 chr9:123836701-123836781 ( 13) GAGCCCAG 1 chr6:35234923-35235003 ( 20) AGGCTCAC 1 chr1:39649538-39649618 ( 38) AGGCTCAG 1 chr1:8963624-8963704 ( 53) AGGCTCAG 1 chr7:99069361-99069441 ( 58) GAGCTTGC 1 chr16:3239212-3239292 ( 42) GAGCTTGC 1 chr16:82204171-82204251 ( 60) GGGCTCCC 1 chr12:51427359-51427439 ( 35) GGGCCCAG 1 chr1:205400127-205400207 ( 54) GAGCTTGG 1 chr12:131892038-13189211 ( 23) CAGCTCGC 1 chr10:64576281-64576361 ( 14) CAGCTCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRGCTCGS MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.85237 E= 9.0e-009 -58 -318 161 -1275 132 -1275 61 -1275 -1275 -1275 191 -1275 -1275 193 -1275 -1275 -1275 -72 -1275 185 -1275 186 -1275 -242 -4 -259 126 -142 -1275 99 84 -1275 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRGCTCGS MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 69 E= 9.0e-009 0.159420 0.028986 0.811594 0.000000 0.594203 0.000000 0.405797 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.159420 0.000000 0.840580 0.000000 0.956522 0.000000 0.043478 0.231884 0.043478 0.637681 0.086957 0.000000 0.521739 0.478261 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRGCTCGS MEME-3 regular expression -------------------------------------------------------------------------------- G[AG]GCTC[GA][CG] -------------------------------------------------------------------------------- Time 12.54 secs. ******************************************************************************** ******************************************************************************** MOTIF ATGGAAAA MEME-4 width = 8 sites = 30 llr = 266 E-value = 3.1e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATGGAAAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 72::aaa7 pos.-specific C 3::::::1 probability G :1aa:::2 matrix T :7:::::: bits 2.1 * * 1.9 ***** 1.7 ***** 1.5 ***** Relative 1.3 * ***** Entropy 1.1 ******* (12.8 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ATGGAAAA consensus CA G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGAAAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr5:89900839-89900919 59 1.26e-05 ACATGAGCTC ATGGAAAA TGTCAAGCTT chr16:58493427-58493507 37 1.26e-05 catcaccaca atggaaaa acccagtcac chrX:195693-195773 33 1.26e-05 tgggtaggta atggaaaa ttacagcaaa chr4:40202783-40202863 5 1.26e-05 CCTC ATGGAAAA AAGCACGGTA chr1:192775189-192775269 22 1.26e-05 CTACCACAGG ATGGAAAA TATGTGTCAT chr12:93454598-93454678 56 1.26e-05 TGCTGAGGTA ATGGAAAA GATGACACTG chr21:35899345-35899425 3 1.26e-05 GA ATGGAAAA AACAGCTGAG chr3:39681409-39681489 22 1.26e-05 AACTAGAGGG ATGGAAAA TATTAGTAAG chr12:825907-825987 31 1.26e-05 CACTCGCCTC ATGGAAAA AACAGCTCAC chr2:37200617-37200697 23 1.26e-05 GTTCTCTGTA ATGGAAAA TTCTATCATT chr13:97908752-97908832 12 2.66e-05 GTCATTCGTA CTGGAAAA AGTGAAGCAG chr5:115420180-115420260 43 2.66e-05 AGCCCAAACG CTGGAAAA AAAAATACTC chr19:8488923-8489003 10 2.66e-05 TGGCGTTGT CTGGAAAA TAGCTCTTCT chr21:11099345-11099425 70 5.37e-05 ttagtgccaa aaggaaaa aag chr1:156786633-156786713 24 5.37e-05 GACTCACGTC ATGGAAAG CCTTAAGACG chr18:21067965-21068045 7 5.37e-05 CTGTAA AAGGAAAA CAAGCATGTC chr2:11376542-11376622 25 5.37e-05 CCCCATATCA ATGGAAAG AATGAGTCAC chr18:8142280-8142360 8 6.77e-05 CTTTGTC ATGGAAAC ACTGACGAGC chr12:80580635-80580715 68 6.77e-05 TAGAATCCTC ATGGAAAC AAACA chr11:118209429-11820950 29 6.77e-05 TCATGACATC ATGGAAAC TTCTGTGCGG chr7:128417896-128417976 41 9.76e-05 aaaaaaccca caggaaaa tatgagtcat chr4:83819999-83820079 36 9.76e-05 ggtgtgtaat caggaaaa tgaaaacatt chr6:2800311-2800391 31 9.76e-05 catcacagca ctggaaag gaacttctga chr2:9198248-9198328 53 9.76e-05 atcccagcta ctggaaag tctgagtcat chr1:175190801-175190881 32 9.76e-05 AGAGAACGAC CTGGAAAG AAGGAAACCA chr9:132199534-132199614 39 1.12e-04 CGGGGGAGGG AGGGAAAA AGTATTTGCT chr3:126191214-126191294 38 1.12e-04 GAAGCAGACA AGGGAAAA CATGACTCAG chr20:31334321-31334401 36 1.27e-04 AAATACAGAA AAGGAAAG GAATTCACTT chr20:52238157-52238237 47 1.56e-04 ACTTTTCCAG AAGGAAAC ACTGAGTCAT chrX:139139338-139139418 18 1.71e-04 GGGGAGTACA ATGGAGAA CTCGAAGCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGAAAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:89900839-89900919 1.3e-05 58_[+4]_14 chr16:58493427-58493507 1.3e-05 36_[+4]_36 chrX:195693-195773 1.3e-05 32_[+4]_40 chr4:40202783-40202863 1.3e-05 4_[+4]_68 chr1:192775189-192775269 1.3e-05 21_[+4]_51 chr12:93454598-93454678 1.3e-05 55_[+4]_17 chr21:35899345-35899425 1.3e-05 2_[+4]_70 chr3:39681409-39681489 1.3e-05 21_[+4]_51 chr12:825907-825987 1.3e-05 30_[+4]_42 chr2:37200617-37200697 1.3e-05 22_[+4]_50 chr13:97908752-97908832 2.7e-05 11_[+4]_61 chr5:115420180-115420260 2.7e-05 42_[+4]_30 chr19:8488923-8489003 2.7e-05 9_[+4]_63 chr21:11099345-11099425 5.4e-05 69_[+4]_3 chr1:156786633-156786713 5.4e-05 23_[+4]_49 chr18:21067965-21068045 5.4e-05 6_[+4]_66 chr2:11376542-11376622 5.4e-05 24_[+4]_48 chr18:8142280-8142360 6.8e-05 7_[+4]_65 chr12:80580635-80580715 6.8e-05 67_[+4]_5 chr11:118209429-11820950 6.8e-05 28_[+4]_44 chr7:128417896-128417976 9.8e-05 40_[+4]_32 chr4:83819999-83820079 9.8e-05 35_[+4]_37 chr6:2800311-2800391 9.8e-05 30_[+4]_42 chr2:9198248-9198328 9.8e-05 52_[+4]_20 chr1:175190801-175190881 9.8e-05 31_[+4]_41 chr9:132199534-132199614 0.00011 38_[+4]_34 chr3:126191214-126191294 0.00011 37_[+4]_35 chr20:31334321-31334401 0.00013 35_[+4]_37 chr20:52238157-52238237 0.00016 46_[+4]_26 chrX:139139338-139139418 0.00017 17_[+4]_55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGAAAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATGGAAAA width=8 seqs=30 chr5:89900839-89900919 ( 59) ATGGAAAA 1 chr16:58493427-58493507 ( 37) ATGGAAAA 1 chrX:195693-195773 ( 33) ATGGAAAA 1 chr4:40202783-40202863 ( 5) ATGGAAAA 1 chr1:192775189-192775269 ( 22) ATGGAAAA 1 chr12:93454598-93454678 ( 56) ATGGAAAA 1 chr21:35899345-35899425 ( 3) ATGGAAAA 1 chr3:39681409-39681489 ( 22) ATGGAAAA 1 chr12:825907-825987 ( 31) ATGGAAAA 1 chr2:37200617-37200697 ( 23) ATGGAAAA 1 chr13:97908752-97908832 ( 12) CTGGAAAA 1 chr5:115420180-115420260 ( 43) CTGGAAAA 1 chr19:8488923-8489003 ( 10) CTGGAAAA 1 chr21:11099345-11099425 ( 70) AAGGAAAA 1 chr1:156786633-156786713 ( 24) ATGGAAAG 1 chr18:21067965-21068045 ( 7) AAGGAAAA 1 chr2:11376542-11376622 ( 25) ATGGAAAG 1 chr18:8142280-8142360 ( 8) ATGGAAAC 1 chr12:80580635-80580715 ( 68) ATGGAAAC 1 chr11:118209429-11820950 ( 29) ATGGAAAC 1 chr7:128417896-128417976 ( 41) CAGGAAAA 1 chr4:83819999-83820079 ( 36) CAGGAAAA 1 chr6:2800311-2800391 ( 31) CTGGAAAG 1 chr2:9198248-9198328 ( 53) CTGGAAAG 1 chr1:175190801-175190881 ( 32) CTGGAAAG 1 chr9:132199534-132199614 ( 39) AGGGAAAA 1 chr3:126191214-126191294 ( 38) AGGGAAAA 1 chr20:31334321-31334401 ( 36) AAGGAAAG 1 chr20:52238157-52238237 ( 47) AAGGAAAC 1 chrX:139139338-139139418 ( 18) ATGGAGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGAAAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.5224 E= 3.1e-005 162 2 -1155 -1155 -25 -1155 -200 166 -1155 -1155 191 -1155 -1155 -1155 191 -1155 207 -1155 -1155 -1155 202 -1155 -300 -1155 207 -1155 -1155 -1155 148 -98 -41 -1155 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGAAAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 3.1e-005 0.733333 0.266667 0.000000 0.000000 0.200000 0.000000 0.066667 0.733333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.966667 0.000000 0.033333 0.000000 1.000000 0.000000 0.000000 0.000000 0.666667 0.133333 0.200000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGAAAA MEME-4 regular expression -------------------------------------------------------------------------------- [AC][TA]GGAAA[AG] -------------------------------------------------------------------------------- Time 16.10 secs. ******************************************************************************** ******************************************************************************** MOTIF CACTGCAC MEME-5 width = 8 sites = 19 llr = 185 E-value = 9.8e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACTGCAC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :9::::92 pos.-specific C a:a::a17 probability G ::::a::1 matrix T :1:a:::: bits 2.1 * 1.9 * **** 1.7 ****** 1.5 ******* Relative 1.3 ******* Entropy 1.1 ******* (14.1 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACTGCAC consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTGCAC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:203895273-203895353 38 1.68e-05 gagattgcac cactgcac tccagcttag chr12:12595603-12595683 58 1.68e-05 TCATCTTTTC CACTGCAC CATACTACTT chr12:51427359-51427439 70 1.68e-05 gagattgcac cactgcac tcc chr16:4303340-4303420 44 1.68e-05 gagatcgcgt cactgcac tccagcctgg chr18:10529648-10529728 61 1.68e-05 gagataatac cactgcac tccagcctgg chr8:99058147-99058227 37 1.68e-05 atgatcgcgc cactgcac tcagcctggg chr9:131632828-131632908 47 1.68e-05 gaggtcatga cactgcac tccagtctgg chr6:27517180-27517260 26 1.68e-05 gagatagtgt cactgcac tccaacctgg chr11:65235503-65235583 4 1.68e-05 cgc cactgcac tccagcctgg chr11:18335700-18335780 47 1.68e-05 tgtgaatagc cactgcac tccagcttgg chr17:55234925-55235005 29 1.68e-05 atcatagcac cactgcac tccagcctgg chr4:25377686-25377766 73 3.20e-05 aatctcggct cactgcaa chr8:90741728-90741808 42 3.20e-05 gatctcggct cactgcaa gctccgcctc chr5:6846555-6846635 9 3.20e-05 tctcggct cactgcaa gctccgcctt chr15:44685938-44686018 25 3.20e-05 aatcttggct cactgcaa tctccacctc chr11:6639412-6639492 35 5.05e-05 ACTAGTGTCA CACTGCCC CGTCCCCAGC chr14:78471796-78471876 60 5.05e-05 TCTGCTTAAC CACTGCCC CACCCTGAAG chr4:111122063-111122143 1 6.76e-05 . cactgcag tccggcttgg chr2:223920140-223920220 65 8.39e-05 GTGCAAGTCT CTCTGCAC CTATTAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTGCAC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:203895273-203895353 1.7e-05 37_[+5]_35 chr12:12595603-12595683 1.7e-05 57_[+5]_15 chr12:51427359-51427439 1.7e-05 69_[+5]_3 chr16:4303340-4303420 1.7e-05 43_[+5]_29 chr18:10529648-10529728 1.7e-05 60_[+5]_12 chr8:99058147-99058227 1.7e-05 36_[+5]_36 chr9:131632828-131632908 1.7e-05 46_[+5]_26 chr6:27517180-27517260 1.7e-05 25_[+5]_47 chr11:65235503-65235583 1.7e-05 3_[+5]_69 chr11:18335700-18335780 1.7e-05 46_[+5]_26 chr17:55234925-55235005 1.7e-05 28_[+5]_44 chr4:25377686-25377766 3.2e-05 72_[+5] chr8:90741728-90741808 3.2e-05 41_[+5]_31 chr5:6846555-6846635 3.2e-05 8_[+5]_64 chr15:44685938-44686018 3.2e-05 24_[+5]_48 chr11:6639412-6639492 5.1e-05 34_[+5]_38 chr14:78471796-78471876 5.1e-05 59_[+5]_13 chr4:111122063-111122143 6.8e-05 [+5]_72 chr2:223920140-223920220 8.4e-05 64_[+5]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTGCAC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACTGCAC width=8 seqs=19 chr1:203895273-203895353 ( 38) CACTGCAC 1 chr12:12595603-12595683 ( 58) CACTGCAC 1 chr12:51427359-51427439 ( 70) CACTGCAC 1 chr16:4303340-4303420 ( 44) CACTGCAC 1 chr18:10529648-10529728 ( 61) CACTGCAC 1 chr8:99058147-99058227 ( 37) CACTGCAC 1 chr9:131632828-131632908 ( 47) CACTGCAC 1 chr6:27517180-27517260 ( 26) CACTGCAC 1 chr11:65235503-65235583 ( 4) CACTGCAC 1 chr11:18335700-18335780 ( 47) CACTGCAC 1 chr17:55234925-55235005 ( 29) CACTGCAC 1 chr4:25377686-25377766 ( 73) CACTGCAA 1 chr8:90741728-90741808 ( 42) CACTGCAA 1 chr5:6846555-6846635 ( 9) CACTGCAA 1 chr15:44685938-44686018 ( 25) CACTGCAA 1 chr11:6639412-6639492 ( 35) CACTGCCC 1 chr14:78471796-78471876 ( 60) CACTGCCC 1 chr4:111122063-111122143 ( 1) CACTGCAG 1 chr2:223920140-223920220 ( 65) CTCTGCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTGCAC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1012 E= 9.8e-004 -1089 193 -1089 -1089 199 -1089 -1089 -214 -1089 193 -1089 -1089 -1089 -1089 -1089 210 -1089 -1089 191 -1089 -1089 193 -1089 -1089 191 -132 -1089 -1089 -18 149 -234 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTGCAC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 9.8e-004 0.000000 1.000000 0.000000 0.000000 0.947368 0.000000 0.000000 0.052632 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.894737 0.105263 0.000000 0.000000 0.210526 0.736842 0.052632 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTGCAC MEME-5 regular expression -------------------------------------------------------------------------------- CACTGCA[CA] -------------------------------------------------------------------------------- Time 19.64 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:55234925-55235005 1.37e-02 28_[+5(1.68e-05)]_44 chr19:2335350-2335430 2.67e-02 80 chr11:18335700-18335780 9.86e-04 3_[+5(6.76e-05)]_7_[+1(8.65e-05)]_\ 20_[+5(1.68e-05)]_26 chr1:175190801-175190881 5.19e-02 31_[+4(9.76e-05)]_41 chr1:198136933-198137013 2.23e-01 80 chr6:35234923-35235003 1.84e-02 24_[+5(6.76e-05)]_48 chr2:583287-583367 2.16e-01 80 chr16:23711953-23712033 5.34e-01 80 chr9:90150781-90150861 4.36e-02 47_[+2(1.11e-05)]_25 chr15:44685938-44686018 2.53e-02 24_[+5(3.20e-05)]_48 chr12:110859006-11085908 7.67e-02 80 chr11:65235503-65235583 1.50e-02 3_[+5(1.68e-05)]_69 chr11:61472433-61472513 1.18e-01 37_[+3(6.00e-05)]_2_[+3(3.85e-05)]_\ 25 chr14:101012889-10101296 9.26e-01 80 chr8:126447009-126447089 1.07e-02 41_[+1(2.63e-05)]_2_[+2(8.51e-05)]_\ 21 chr1:230907669-230907749 2.52e-01 80 chr17:53800446-53800526 5.31e-02 17_[+1(2.63e-05)]_55 chr2:9198248-9198328 5.83e-03 52_[+4(9.76e-05)]_2_[+1(2.63e-05)]_\ 10 chr2:39002433-39002513 3.98e-02 80 chr5:6846555-6846635 1.32e-02 8_[+5(3.20e-05)]_64 chr9:34523120-34523200 6.50e-02 9_[+3(8.18e-05)]_12_[+3(8.18e-05)]_\ 2_[+3(8.18e-05)]_33 chr16:640459-640539 6.58e-02 35_[+3(1.91e-05)]_37 chr2:54785650-54785730 1.36e-01 80 chr2:152735588-152735668 4.67e-02 68_[+1(2.63e-05)]_4 chr2:70484581-70484661 8.53e-01 80 chr2:242088480-242088560 9.37e-01 80 chr6:2800311-2800391 3.06e-04 30_[+4(9.76e-05)]_7_[+1(8.65e-05)]_\ 27 chr4:75083241-75083321 2.42e-02 32_[+1(8.65e-05)]_40 chr14:102512763-10251284 3.00e-01 80 chrX:139139338-139139418 3.27e-01 80 chr17:2310371-2310451 2.39e-02 80 chr1:118149768-118149848 2.88e-01 80 chr7:44622314-44622394 6.72e-02 80 chr3:181412965-181413045 5.39e-02 44_[+3(6.00e-05)]_28 chr4:159969316-159969396 9.24e-01 80 chr4:2390315-2390395 4.47e-01 80 chr4:140477326-140477406 1.17e-01 48_[+3(6.00e-05)]_24 chr10:134298622-13429870 2.68e-01 80 chr2:37200617-37200697 1.29e-03 22_[+4(1.26e-05)]_34_[+2(6.05e-05)]_\ 8 chrX:48904917-48904997 8.48e-02 4_[+5(3.20e-05)]_15_[+5(3.20e-05)]_\ 45 chr17:55015150-55015230 1.54e-01 37_[+2(4.66e-05)]_35 chr4:183949184-183949264 1.05e-01 30_[+1(8.65e-05)]_42 chr16:75612790-75612870 1.27e-03 48_[+1(8.65e-05)]_2_[+2(1.11e-05)]_\ 14 chr11:118209429-11820950 3.99e-03 28_[+4(6.77e-05)]_44 chr3:93688998-93689078 1.56e-02 29_[+1(8.65e-05)]_43 chr17:74341557-74341637 1.88e-01 80 chr6:27517180-27517260 3.13e-02 25_[+5(1.68e-05)]_47 chr1:27519400-27519480 3.62e-02 18_[+1(2.63e-05)]_54 chr2:11376542-11376622 7.01e-03 24_[+4(5.37e-05)]_2_[+1(8.65e-05)]_\ 38 chr19:51109404-51109484 1.14e-01 72_[+3(9.88e-05)] chr2:112945822-112945902 1.23e-02 67_[+1(8.65e-05)]_5 chr4:72904770-72904850 2.34e-01 80 chr10:64576281-64576361 6.10e-01 80 chr11:102906901-10290698 1.87e-03 49_[+2(3.58e-05)]_23 chr14:24786687-24786767 1.18e-02 32_[+1(2.63e-05)]_40 chr6:149068098-149068178 7.60e-01 80 chr11:33744520-33744600 3.12e-02 37_[+2(1.11e-05)]_35 chr12:825907-825987 1.40e-05 30_[+4(1.26e-05)]_15_[+3(9.88e-05)]_\ 19 chr12:54720844-54720924 6.27e-01 80 chr5:108906326-108906406 6.82e-01 80 chr3:58885451-58885531 2.39e-03 53_[+2(1.11e-05)]_19 chr2:129937817-129937897 1.78e-02 37_[+2(1.11e-05)]_35 chr2:158712391-158712471 3.59e-01 80 chrX:153402192-153402272 9.42e-02 80 chr12:133065801-13306588 1.15e-01 53_[+3(3.85e-05)]_19 chr12:116714847-11671492 1.49e-01 80 chr17:63088545-63088625 1.23e-03 35_[+2(1.11e-05)]_37 chr9:131632828-131632908 3.89e-03 46_[+5(1.68e-05)]_26 chr12:80580635-80580715 6.94e-05 35_[+1(2.63e-05)]_2_[+2(4.66e-05)]_\ 14_[+4(6.77e-05)]_5 chr12:131892038-13189211 1.65e-01 80 chr19:18315761-18315841 1.35e-01 80 chr8:99058147-99058227 2.51e-03 36_[+5(1.68e-05)]_36 chr2:142887794-142887874 1.52e-01 43_[+3(1.91e-05)]_29 chr9:123836701-123836781 4.14e-01 80 chr13:99852370-99852450 5.38e-02 55_[+3(6.00e-05)]_17 chr19:8488923-8489003 5.16e-02 9_[+4(2.66e-05)]_63 chr20:52238157-52238237 9.05e-04 56_[+1(2.63e-05)]_16 chr7:116066523-116066603 9.60e-03 30_[+1(8.65e-05)]_42 chr7:42909154-42909234 1.85e-03 23_[+1(2.63e-05)]_49 chr6:111926714-111926794 1.65e-01 36_[+3(6.00e-05)]_36 chr2:241887607-241887687 4.59e-02 80 chr4:129098906-129098986 7.83e-03 45_[+1(8.65e-05)]_2_[+2(3.58e-05)]_\ 17 chr17:21454555-21454635 5.83e-02 80 chr22:50338994-50339074 5.21e-03 80 chr17:65989416-65989496 1.28e-01 69_[+3(8.18e-05)]_3 chr3:39681409-39681489 1.13e-02 21_[+4(1.26e-05)]_51 chr15:33162809-33162889 3.49e-03 11_[+1(8.65e-05)]_2_[+2(3.58e-05)]_\ 51 chrX:110924915-110924995 9.23e-04 26_[+3(1.91e-05)]_46 chr3:69145036-69145116 7.51e-01 80 chr4:84278527-84278607 6.88e-03 34_[+1(2.63e-05)]_38 chr15:52640617-52640697 1.79e-02 80 chr2:223920140-223920220 1.98e-03 28_[+2(1.11e-05)]_28_[+5(8.39e-05)]_\ 8 chr9:99983962-99984042 1.52e-01 22_[+3(6.00e-05)]_50 chr4:78739759-78739839 9.92e-02 80 chr14:51422511-51422591 1.22e-01 80 chr21:36355522-36355602 6.37e-02 60_[+1(2.63e-05)]_12 chr5:72746850-72746930 1.87e-01 80 chr12:53693034-53693114 3.54e-04 33_[+1(8.65e-05)]_39 chr8:124601666-124601746 1.06e-01 80 chr3:156966520-156966600 4.79e-02 33_[+1(2.63e-05)]_39 chr1:38157244-38157324 2.68e-01 72_[+3(6.00e-05)] chr8:144853273-144853353 5.00e-01 80 chr7:625170-625250 5.10e-01 80 chr8:6591988-6592068 1.04e-02 80 chr2:69878544-69878624 3.75e-01 80 chr20:31334321-31334401 1.25e-01 80 chr10:52353933-52354013 1.27e-01 80 chr15:85177096-85177176 3.48e-01 80 chr2:38603664-38603744 1.73e-01 80 chr9:98279228-98279308 1.69e-01 80 chr17:43227068-43227148 4.47e-01 80 chr17:21935070-21935150 4.17e-01 80 chr18:10529648-10529728 6.57e-03 60_[+5(1.68e-05)]_12 chr18:1513667-1513747 3.00e-03 37_[+2(2.33e-05)]_3_[+1(2.63e-05)]_\ 24 chr3:186545495-186545575 3.49e-01 80 chr7:56130257-56130337 1.54e-02 33_[+1(2.63e-05)]_39 chr1:203598911-203598991 9.17e-02 80 chr1:236584414-236584494 7.99e-02 44_[+1(2.63e-05)]_28 chr8:80932850-80932930 1.13e-02 7_[+1(2.63e-05)]_65 chr5:115420180-115420260 3.56e-04 4_[+3(1.91e-05)]_30_[+4(2.66e-05)]_\ 30 chr5:149339106-149339186 5.72e-01 80 chr3:182896653-182896733 4.86e-02 80 chr19:18705120-18705200 9.64e-03 47_[+3(1.91e-05)]_14_[+3(3.85e-05)]_\ 3 chr6:30434144-30434224 1.63e-01 23_[+3(3.85e-05)]_49 chr4:83819999-83820079 3.19e-03 3_[+1(8.65e-05)]_24_[+4(9.76e-05)]_\ 37 chr9:95571438-95571518 1.34e-01 80 chr7:107877592-107877672 3.79e-01 80 chr21:35899345-35899425 1.01e-03 2_[+4(1.26e-05)]_52_[+2(3.58e-05)]_\ 10 chr5:108763512-108763592 8.88e-04 12_[+1(2.63e-05)]_60 chr10:21786353-21786433 4.47e-03 80 chr3:171594648-171594728 3.04e-02 14_[+1(8.65e-05)]_58 chr12:65073278-65073358 3.58e-01 80 chr9:138276815-138276895 1.00e+00 80 chr16:89767320-89767400 9.49e-01 80 chr14:78471796-78471876 5.58e-03 59_[+5(5.05e-05)]_13 chr18:60408651-60408731 1.57e-02 31_[+1(8.65e-05)]_41 chr8:134262052-134262132 4.44e-02 80 chr5:157375983-157376063 4.82e-01 80 chr12:93454598-93454678 2.72e-02 55_[+4(1.26e-05)]_17 chr3:141206600-141206680 3.41e-01 80 chr12:57294554-57294634 3.37e-03 40_[+1(8.65e-05)]_2_[+2(2.33e-05)]_\ 22 chr13:97908752-97908832 7.33e-02 11_[+4(2.66e-05)]_61 chr4:111122063-111122143 5.12e-02 [+5(6.76e-05)]_72 chr15:56657402-56657482 2.21e-01 80 chr5:145180950-145181030 6.28e-02 80 chr15:69754966-69755046 7.32e-01 80 chr1:201682678-201682758 2.07e-04 25_[+1(8.65e-05)]_2_[+2(2.33e-05)]_\ 37 chr17:37880317-37880397 6.53e-02 80 chr12:46123691-46123771 1.30e-01 80 chr1:8963624-8963704 1.63e-02 35_[+1(8.65e-05)]_37 chr1:192775189-192775269 3.06e-03 21_[+4(1.26e-05)]_51 chr17:73364521-73364601 1.85e-01 80 chr3:126191214-126191294 2.43e-03 47_[+1(8.65e-05)]_25 chr7:43152980-43153060 1.36e-02 60_[+3(6.00e-05)]_12 chr5:77633978-77634058 9.11e-03 22_[+1(8.65e-05)]_2_[+2(2.33e-05)]_\ 40 chr16:90039512-90039592 2.93e-01 54_[+3(8.18e-05)]_18 chr13:44716601-44716681 3.94e-01 80 chr5:173312758-173312838 1.35e-01 80 chr7:128417896-128417976 6.03e-03 40_[+4(9.76e-05)]_2_[+1(2.63e-05)]_\ 22 chr2:172065335-172065415 8.08e-02 80 chr8:90741728-90741808 2.30e-02 41_[+5(3.20e-05)]_31 chr21:44494865-44494945 8.39e-02 80 chr11:47939835-47939915 1.86e-02 80 chr4:40202783-40202863 3.40e-02 4_[+4(1.26e-05)]_68 chr7:16685310-16685390 4.92e-02 63_[+3(3.85e-05)]_9 chrX:3733707-3733787 6.83e-02 33_[+3(8.18e-05)]_39 chr7:139636780-139636860 1.23e-02 4_[+1(8.65e-05)]_68 chr9:132199534-132199614 3.78e-02 80 chr3:66024176-66024256 9.38e-02 80 chr11:43963650-43963730 2.48e-01 80 chr7:871478-871558 4.39e-02 40_[+1(2.63e-05)]_32 chr2:64752514-64752594 1.40e-02 62_[+1(2.63e-05)]_10 chr3:186545696-186545776 8.00e-01 80 chr1:227714402-227714482 4.39e-03 53_[+2(1.11e-05)]_19 chr16:4303340-4303420 6.87e-03 43_[+5(1.68e-05)]_29 chr4:57848201-57848281 1.07e-01 30_[+2(1.11e-05)]_42 chrX:195693-195773 1.66e-02 32_[+4(1.26e-05)]_40 chr1:205400127-205400207 4.48e-01 80 chr1:27929793-27929873 2.01e-01 80 chr8:20061372-20061452 4.57e-02 15_[+2(1.11e-05)]_57 chr3:128598625-128598705 2.07e-01 80 chr17:18128679-18128759 2.42e-01 80 chr1:201808291-201808371 1.69e-02 80 chrX:135930203-135930283 8.55e-01 80 chr12:95576752-95576832 9.34e-03 69_[+1(8.65e-05)]_3 chr18:8142280-8142360 3.72e-04 7_[+4(6.77e-05)]_35_[+1(8.65e-05)]_\ 22 chr10:134385600-13438568 2.59e-03 32_[+1(2.63e-05)]_40 chr2:46552692-46552772 3.96e-02 33_[+2(1.11e-05)]_39 chr16:58493427-58493507 1.24e-03 11_[+1(8.65e-05)]_17_[+4(1.26e-05)]_\ 36 chr3:14443822-14443902 8.00e-01 80 chr4:25377686-25377766 7.65e-03 72_[+5(3.20e-05)] chr7:99841229-99841309 9.06e-04 8_[+2(1.11e-05)]_64 chr17:48520849-48520929 1.60e-01 80 chr1:154110527-154110607 1.07e-02 22_[+1(2.63e-05)]_50 chrX:39719750-39719830 2.07e-01 80 chr1:231175544-231175624 7.72e-01 80 chr4:109145896-109145976 1.11e-02 47_[+3(6.00e-05)]_25 chr14:54902372-54902452 5.51e-02 13_[+1(2.63e-05)]_59 chr17:26662082-26662162 8.09e-02 80 chr10:104906067-10490614 5.24e-01 80 chr17:26646372-26646452 3.69e-01 80 chr1:204380117-204380197 7.40e-01 80 chr22:42085650-42085730 3.46e-01 80 chr16:25026795-25026875 5.42e-01 80 chr7:100895269-100895349 1.77e-01 80 chr17:67853669-67853749 4.53e-02 50_[+1(2.63e-05)]_22 chr12:51427359-51427439 7.34e-04 69_[+5(1.68e-05)]_3 chr22:20305368-20305448 7.98e-01 80 chr1:224033041-224033121 3.79e-02 39_[+3(6.00e-05)]_33 chr11:62328240-62328320 1.81e-02 38_[+1(8.65e-05)]_34 chr1:28696654-28696734 8.23e-01 80 chr18:2658331-2658411 5.75e-02 21_[+1(2.63e-05)]_51 chr4:128554227-128554307 4.63e-02 80 chr12:12595603-12595683 7.42e-06 7_[+2(1.11e-05)]_28_[+1(2.63e-05)]_\ 6_[+5(1.68e-05)]_15 chr11:6639412-6639492 7.54e-02 34_[+5(5.05e-05)]_38 chr15:93374957-93375037 1.82e-02 59_[+1(2.63e-05)]_13 chr1:27925842-27925922 7.04e-03 4_[+1(8.65e-05)]_2_[+2(6.05e-05)]_\ 58 chr17:71302746-71302826 1.68e-01 80 chr6:16183584-16183664 3.46e-02 15_[+2(1.11e-05)]_57 chr5:79141952-79142032 4.68e-03 21_[+1(2.63e-05)]_51 chr2:234475535-234475615 2.45e-02 28_[+3(1.91e-05)]_44 chr12:116660313-11666039 4.25e-02 46_[+1(8.65e-05)]_26 chr1:207405918-207405998 8.93e-02 80 chr1:37980715-37980795 3.27e-02 55_[+3(1.91e-05)]_17 chr4:184425267-184425347 5.33e-01 80 chr18:21067965-21068045 1.27e-01 6_[+4(5.37e-05)]_66 chr4:57301677-57301757 2.21e-01 80 chr1:156786633-156786713 5.80e-02 23_[+4(5.37e-05)]_49 chr1:203895273-203895353 1.46e-02 37_[+5(1.68e-05)]_35 chr21:11099345-11099425 2.87e-01 1_[+4(9.76e-05)]_60_[+4(5.37e-05)]_\ 3 chr11:3367154-3367234 1.25e-02 80 chr1:75968617-75968697 5.99e-02 32_[+1(8.65e-05)]_40 chr16:3239212-3239292 4.37e-02 80 chr5:89900839-89900919 9.39e-04 28_[+1(2.63e-05)]_22_[+4(1.26e-05)]_\ 14 chr11:120039777-12003985 1.94e-01 80 chr8:124161441-124161521 1.18e-01 80 chrX:153775657-153775737 1.46e-01 80 chr16:3200418-3200498 2.32e-01 43_[+3(6.00e-05)]_29 chr10:11943920-11944000 3.75e-02 2_[+1(8.65e-05)]_70 chr7:99069361-99069441 3.99e-02 80 chr1:249133476-249133556 6.75e-02 80 chr1:39649538-39649618 8.60e-03 66_[+1(2.63e-05)]_6 chr1:204463636-204463716 6.98e-02 80 chr17:58042296-58042376 3.66e-01 80 chr9:125164811-125164891 5.95e-03 14_[+2(7.27e-05)]_5_[+1(8.65e-05)]_\ 33_[+1(8.65e-05)]_4 chr16:82204171-82204251 1.04e-01 80 chrX:24690886-24690966 7.77e-03 4_[+3(3.85e-05)]_68 chr12:71089301-71089381 8.01e-02 80 chr21:30275971-30276051 7.83e-01 80 chr17:76971256-76971336 4.07e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n06.farnam.hpc.yale.internal ********************************************************************************