******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/NEUROD1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr9:2241992-2242072 1.0000 80 chr2:96917554-96917634 1.0000 80 chr1:10739800-10739880 1.0000 80 chr8:127570636-127570716 1.0000 80 chr19:7198139-7198219 1.0000 80 chr19:55690234-55690314 1.0000 80 chr17:2304410-2304490 1.0000 80 chr15:70403773-70403853 1.0000 80 chr22:38852127-38852207 1.0000 80 chr1:10856748-10856828 1.0000 80 chr18:61034913-61034993 1.0000 80 chr16:759705-759785 1.0000 80 chr9:3525875-3525955 1.0000 80 chr20:16554085-16554165 1.0000 80 chr19:12947221-12947301 1.0000 80 chrX:65383972-65384052 1.0000 80 chr3:155462871-155462951 1.0000 80 chr5:179233918-179233998 1.0000 80 chr4:170948502-170948582 1.0000 80 chr1:220267316-220267396 1.0000 80 chr7:66395436-66395516 1.0000 80 chr15:44580732-44580812 1.0000 80 chr21:43299148-43299228 1.0000 80 chr22:38859470-38859550 1.0000 80 chr12:53297292-53297372 1.0000 80 chr13:77901326-77901406 1.0000 80 chr1:27668418-27668498 1.0000 80 chr3:152879879-152879959 1.0000 80 chr11:14913846-14913926 1.0000 80 chr17:36754963-36755043 1.0000 80 chr5:77655756-77655836 1.0000 80 chr10:99599985-99600065 1.0000 80 chr8:124073111-124073191 1.0000 80 chr3:49171104-49171184 1.0000 80 chr12:75724119-75724199 1.0000 80 chr22:38857668-38857748 1.0000 80 chr2:65662931-65663011 1.0000 80 chr17:74137383-74137463 1.0000 80 chr22:39925301-39925381 1.0000 80 chr20:40247061-40247141 1.0000 80 chr1:204662159-204662239 1.0000 80 chr7:30067892-30067972 1.0000 80 chrX:129300165-129300245 1.0000 80 chr8:145159249-145159329 1.0000 80 chr11:65601277-65601357 1.0000 80 chr1:160001797-160001877 1.0000 80 chr5:177540527-177540607 1.0000 80 chrX:70474062-70474142 1.0000 80 chr22:21996447-21996527 1.0000 80 chr14:94492603-94492683 1.0000 80 chr13:67804604-67804684 1.0000 80 chr10:89622174-89622254 1.0000 80 chr19:54641275-54641355 1.0000 80 chr5:96271651-96271731 1.0000 80 chr1:859206-859286 1.0000 80 chr19:13906078-13906158 1.0000 80 chr9:38069764-38069844 1.0000 80 chr11:47969824-47969904 1.0000 80 chr11:61348964-61349044 1.0000 80 chr19:18315092-18315172 1.0000 80 chr17:39943179-39943259 1.0000 80 chr8:144152504-144152584 1.0000 80 chr7:111202627-111202707 1.0000 80 chr8:87354656-87354736 1.0000 80 chr7:8008269-8008349 1.0000 80 chr4:26322292-26322372 1.0000 80 chr19:36193354-36193434 1.0000 80 chr19:2944997-2945077 1.0000 80 chr15:69113259-69113339 1.0000 80 chr10:52383740-52383820 1.0000 80 chr1:151254553-151254633 1.0000 80 chr12:57853461-57853541 1.0000 80 chr17:2304919-2304999 1.0000 80 chr19:14228637-14228717 1.0000 80 chr17:62340758-62340838 1.0000 80 chr10:70360136-70360216 1.0000 80 chr12:96883289-96883369 1.0000 80 chr19:7294375-7294455 1.0000 80 chr15:85523613-85523693 1.0000 80 chr11:67275737-67275817 1.0000 80 chr1:197170651-197170731 1.0000 80 chrX:2382243-2382323 1.0000 80 chr13:100153546-10015362 1.0000 80 chr1:200639205-200639285 1.0000 80 chr5:77656225-77656305 1.0000 80 chr3:127309624-127309704 1.0000 80 chr1:46867932-46868012 1.0000 80 chr1:25757234-25757314 1.0000 80 chr15:70394038-70394118 1.0000 80 chr8:19674777-19674857 1.0000 80 chrX:2375411-2375491 1.0000 80 chr20:48552750-48552830 1.0000 80 chrX:2376012-2376092 1.0000 80 chr8:141474529-141474609 1.0000 80 chr7:150707510-150707590 1.0000 80 chr19:4581821-4581901 1.0000 80 chr16:58529160-58529240 1.0000 80 chr17:40346518-40346598 1.0000 80 chr11:66049993-66050073 1.0000 80 chr12:53473217-53473297 1.0000 80 chr5:32313295-32313375 1.0000 80 chr1:243585272-243585352 1.0000 80 chr1:22263963-22264043 1.0000 80 chr1:154973318-154973398 1.0000 80 chr19:36248884-36248964 1.0000 80 chr1:17566023-17566103 1.0000 80 chr19:6424958-6425038 1.0000 80 chr1:220263206-220263286 1.0000 80 chr3:195163929-195164009 1.0000 80 chr17:4870667-4870747 1.0000 80 chr12:104531974-10453205 1.0000 80 chr6:4648006-4648086 1.0000 80 chr19:19174655-19174735 1.0000 80 chrX:52963995-52964075 1.0000 80 chr6:43142460-43142540 1.0000 80 chr8:33330696-33330776 1.0000 80 chr3:152879264-152879344 1.0000 80 chr17:47866542-47866622 1.0000 80 chr2:73460457-73460537 1.0000 80 chr19:55690779-55690859 1.0000 80 chr1:207997350-207997430 1.0000 80 chr1:54355551-54355631 1.0000 80 chr20:10414915-10414995 1.0000 80 chr12:74686518-74686598 1.0000 80 chr19:15334366-15334446 1.0000 80 chr20:17662974-17663054 1.0000 80 chr1:51985123-51985203 1.0000 80 chr6:31831475-31831555 1.0000 80 chr1:100817828-100817908 1.0000 80 chr19:17414255-17414335 1.0000 80 chr11:63953459-63953539 1.0000 80 chr10:70319999-70320079 1.0000 80 chr16:57769282-57769362 1.0000 80 chr5:172484181-172484261 1.0000 80 chr9:139780749-139780829 1.0000 80 chr15:75016483-75016563 1.0000 80 chr19:46149462-46149542 1.0000 80 chr8:28259382-28259462 1.0000 80 chr4:170947608-170947688 1.0000 80 chr6:53409869-53409949 1.0000 80 chr20:30085817-30085897 1.0000 80 chr19:17420241-17420321 1.0000 80 chr7:23053774-23053854 1.0000 80 chr15:98503715-98503795 1.0000 80 chr1:155164691-155164771 1.0000 80 chr20:1305883-1305963 1.0000 80 chr12:57024150-57024230 1.0000 80 chr19:3557685-3557765 1.0000 80 chr1:156391548-156391628 1.0000 80 chr14:23755421-23755501 1.0000 80 chr17:7620614-7620694 1.0000 80 chr17:46632704-46632784 1.0000 80 chr17:58213089-58213169 1.0000 80 chr19:14117144-14117224 1.0000 80 chr15:83478245-83478325 1.0000 80 chr11:59383430-59383510 1.0000 80 chr12:113658958-11365903 1.0000 80 chr13:77903335-77903415 1.0000 80 chr2:232526970-232527050 1.0000 80 chr17:38574259-38574339 1.0000 80 chr15:40615670-40615750 1.0000 80 chr17:79196843-79196923 1.0000 80 chr11:560854-560934 1.0000 80 chr19:41082685-41082765 1.0000 80 chr19:54663588-54663668 1.0000 80 chr19:1507835-1507915 1.0000 80 chr22:20004406-20004486 1.0000 80 chr10:120101809-12010188 1.0000 80 chr2:88927166-88927246 1.0000 80 chr4:52709147-52709227 1.0000 80 chr20:32320024-32320104 1.0000 80 chr14:23790568-23790648 1.0000 80 chr15:43213052-43213132 1.0000 80 chr16:50059003-50059083 1.0000 80 chr10:105992118-10599219 1.0000 80 chr9:127905897-127905977 1.0000 80 chr11:68228054-68228134 1.0000 80 chr16:30382011-30382091 1.0000 80 chr1:856598-856678 1.0000 80 chr2:97523789-97523869 1.0000 80 chr12:49351290-49351370 1.0000 80 chr20:10415180-10415260 1.0000 80 chr6:157098420-157098500 1.0000 80 chr12:109535802-10953588 1.0000 80 chr15:64752665-64752745 1.0000 80 chr20:44509714-44509794 1.0000 80 chr5:77590604-77590684 1.0000 80 chr17:74667907-74667987 1.0000 80 chr1:151682824-151682904 1.0000 80 chr19:4472105-4472185 1.0000 80 chr6:32098137-32098217 1.0000 80 chr14:104181825-10418190 1.0000 80 chr12:122028228-12202830 1.0000 80 chr3:88108211-88108291 1.0000 80 chr15:63796707-63796787 1.0000 80 chr3:58318525-58318605 1.0000 80 chr8:41909531-41909611 1.0000 80 chr19:42580149-42580229 1.0000 80 chr16:69599757-69599837 1.0000 80 chr3:113415586-113415666 1.0000 80 chr4:141075376-141075456 1.0000 80 chr22:35696165-35696245 1.0000 80 chr11:17298174-17298254 1.0000 80 chr17:3627124-3627204 1.0000 80 chr22:21400077-21400157 1.0000 80 chr19:7894846-7894926 1.0000 80 chr6:139696531-139696611 1.0000 80 chr7:73082125-73082205 1.0000 80 chr9:140117980-140118060 1.0000 80 chr12:14537912-14537992 1.0000 80 chr2:169655007-169655087 1.0000 80 chr1:45140227-45140307 1.0000 80 chr8:11660048-11660128 1.0000 80 chr12:57856249-57856329 1.0000 80 chr3:50358947-50359027 1.0000 80 chr14:21737663-21737743 1.0000 80 chr10:80828599-80828679 1.0000 80 chr15:63795584-63795664 1.0000 80 chr17:26368611-26368691 1.0000 80 chr4:129474155-129474235 1.0000 80 chr19:46498617-46498697 1.0000 80 chr16:2961825-2961905 1.0000 80 chr19:18303767-18303847 1.0000 80 chr16:31084570-31084650 1.0000 80 chr15:75744246-75744326 1.0000 80 chr9:139743700-139743780 1.0000 80 chr1:156721613-156721693 1.0000 80 chr19:42773245-42773325 1.0000 80 chr17:80656627-80656707 1.0000 80 chr12:57325310-57325390 1.0000 80 chr12:56211723-56211803 1.0000 80 chr7:30066407-30066487 1.0000 80 chr19:9945420-9945500 1.0000 80 chr19:7197322-7197402 1.0000 80 chr20:31063239-31063319 1.0000 80 chr12:56367585-56367665 1.0000 80 chr6:80247186-80247266 1.0000 80 chr20:56293657-56293737 1.0000 80 chr16:23706404-23706484 1.0000 80 chr6:160183392-160183472 1.0000 80 chr14:96001162-96001242 1.0000 80 chr19:33462919-33462999 1.0000 80 chr19:47551913-47551993 1.0000 80 chr1:27018811-27018891 1.0000 80 chr15:99191609-99191689 1.0000 80 chrX:71526814-71526894 1.0000 80 chr19:45394299-45394379 1.0000 80 chr9:132641536-132641616 1.0000 80 chr18:12407919-12407999 1.0000 80 chr1:8586137-8586217 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_NEUROD1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/NEUROD1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.189 C 0.311 G 0.316 T 0.185 Background letter frequencies (from file dataset with add-one prior applied): A 0.189 C 0.311 G 0.316 T 0.185 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CCAATSAG MEME-1 width = 8 sites = 44 llr = 404 E-value = 5.1e-027 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCAATSAG MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::aa::72 pos.-specific C aa:::7:1 probability G :::::338 matrix T ::::a::: bits 2.4 * * 2.2 *** 1.9 *** 1.7 ***** Relative 1.5 ***** * Entropy 1.2 ***** * (13.2 bits) 1.0 ***** * 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCAATCAG consensus GG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAATSAG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:33462919-33462999 26 1.19e-05 CGGCCCTCGA CCAATCAG AGCTAAGGTT chr19:46498617-46498697 58 1.19e-05 TAAGCTGTGA CCAATCAG AAGCGAGAAC chr8:11660048-11660128 70 1.19e-05 GCGGCCCTGG CCAATCAG CGC chr11:17298174-17298254 36 1.19e-05 GCGAACCGGA CCAATCAG CGGCCGCAGA chr3:113415586-113415666 8 1.19e-05 CAACCCG CCAATCAG GCTGCGGGAA chr14:104181825-10418190 25 1.19e-05 GTGGGCTACA CCAATCAG AGACGAAGCG chr12:109535802-10953588 71 1.19e-05 GGTGCGCTGT CCAATCAG AG chr19:1507835-1507915 73 1.19e-05 CGCACACTGG CCAATCAG chr17:38574259-38574339 45 1.19e-05 TTTGAATAAA CCAATCAG GTTAGGGAGG chr12:113658958-11365903 9 1.19e-05 AAGTCTGA CCAATCAG AAGCACCGCC chr11:59383430-59383510 13 1.19e-05 CAGATAAAGG CCAATCAG ACTTTTGGGG chr17:58213089-58213169 2 1.19e-05 G CCAATCAG CGCTCAGCAG chr19:19174655-19174735 10 1.19e-05 CCACCTCTG CCAATCAG CGATTGGCTT chr17:4870667-4870747 54 1.19e-05 AGGCACCCTA CCAATCAG ACCAGGTCAG chr12:53473217-53473297 10 1.19e-05 CCATCTAAG CCAATCAG CAACGGCCTC chr19:36193354-36193434 8 1.19e-05 CTTAGGG CCAATCAG AAGCGACAGC chr19:18315092-18315172 44 1.19e-05 GGCGAAGTAG CCAATCAG AGATTGTCTA chr11:68228054-68228134 59 2.39e-05 GAGAGAGGGG CCAATGAG CCTGGAGCTG chr16:50059003-50059083 70 2.39e-05 GTAGAGGAAT CCAATGAG CGT chr2:88927166-88927246 6 2.39e-05 AATTA CCAATGAG AAATGCCCTT chr19:41082685-41082765 43 2.39e-05 AGTCTCTGGC CCAATGAG CAGCCTATGG chr11:63953459-63953539 59 2.39e-05 TCCCCGCTGT CCAATGAG AAGGAAGTGG chr19:17414255-17414335 71 2.39e-05 AGTTAGGAGC CCAATGAG AG chr1:151254553-151254633 31 2.39e-05 GGCCCCTTGC CCAATGAG CATAAGAGGA chr6:43142460-43142540 47 3.10e-05 AACGCCTCTG CCAATCAA GGGTCTTGGG chr19:36248884-36248964 4 3.10e-05 TCT CCAATCAA ACACGCCCTG chr3:127309624-127309704 65 3.10e-05 GTGGGAGAGA CCAATCAA ATTCCCAA chr19:18303767-18303847 8 5.09e-05 AACGTTA CCAATCGG CATGCGGGAC chr9:139780749-139780829 7 5.09e-05 CGCCGA CCAATCGG CGCACGCTGC chr19:6424958-6425038 3 5.09e-05 GG CCAATCGG AGTGCAATGA chr19:45394299-45394379 6 7.83e-05 GCGAG CCAATGGG AAGGGTGGGA chr12:56211723-56211803 41 7.83e-05 AGACCACCAA CCAATGGG TGGTGGCAGC chr10:120101809-12010188 51 7.83e-05 TGCGTCTCAA CCAATGGG CTGGGGCCGT chr11:560854-560934 6 7.83e-05 GGCAG CCAATGGG CGCGGGGAGG chr5:172484181-172484261 37 7.83e-05 GACTTCTGCA CCAATGGG CGTGGGGGAG chr14:21737663-21737743 53 9.00e-05 ACAATGATAT CCAATCAC AATTAGCAGT chr7:8008269-8008349 40 9.00e-05 TATTCCAGAA CCAATCAC TCGAGTTCTA chr19:54641275-54641355 3 1.02e-04 GG CCAATCGA ACGCCGCGCC chr11:65601277-65601357 69 1.02e-04 GCCCCGCTAC CCAATCGA AAGG chr7:30066407-30066487 6 1.14e-04 TCAAG CCAATGAC GCTGCAACGA chr14:23790568-23790648 1 1.26e-04 . CCAATGGA GTACTAGCTC chr19:17420241-17420321 28 1.26e-04 CTGGATGCGG CCAATGGA AGCGTGCAAA chr19:47551913-47551993 64 1.45e-04 TATGCGCTCG CCACTCAG GTCCGGCGT chr1:151682824-151682904 33 1.45e-04 TGGCAACCGC CCACTCAG CCTGATTTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAATSAG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:33462919-33462999 1.2e-05 25_[+1]_47 chr19:46498617-46498697 1.2e-05 57_[+1]_15 chr8:11660048-11660128 1.2e-05 69_[+1]_3 chr11:17298174-17298254 1.2e-05 35_[+1]_37 chr3:113415586-113415666 1.2e-05 7_[+1]_65 chr14:104181825-10418190 1.2e-05 24_[+1]_48 chr12:109535802-10953588 1.2e-05 70_[+1]_2 chr19:1507835-1507915 1.2e-05 72_[+1] chr17:38574259-38574339 1.2e-05 44_[+1]_28 chr12:113658958-11365903 1.2e-05 8_[+1]_64 chr11:59383430-59383510 1.2e-05 12_[+1]_60 chr17:58213089-58213169 1.2e-05 1_[+1]_71 chr19:19174655-19174735 1.2e-05 9_[+1]_63 chr17:4870667-4870747 1.2e-05 53_[+1]_19 chr12:53473217-53473297 1.2e-05 9_[+1]_63 chr19:36193354-36193434 1.2e-05 7_[+1]_65 chr19:18315092-18315172 1.2e-05 43_[+1]_29 chr11:68228054-68228134 2.4e-05 58_[+1]_14 chr16:50059003-50059083 2.4e-05 69_[+1]_3 chr2:88927166-88927246 2.4e-05 5_[+1]_67 chr19:41082685-41082765 2.4e-05 42_[+1]_30 chr11:63953459-63953539 2.4e-05 58_[+1]_14 chr19:17414255-17414335 2.4e-05 70_[+1]_2 chr1:151254553-151254633 2.4e-05 30_[+1]_42 chr6:43142460-43142540 3.1e-05 46_[+1]_26 chr19:36248884-36248964 3.1e-05 3_[+1]_69 chr3:127309624-127309704 3.1e-05 64_[+1]_8 chr19:18303767-18303847 5.1e-05 7_[+1]_65 chr9:139780749-139780829 5.1e-05 6_[+1]_66 chr19:6424958-6425038 5.1e-05 2_[+1]_70 chr19:45394299-45394379 7.8e-05 5_[+1]_67 chr12:56211723-56211803 7.8e-05 40_[+1]_32 chr10:120101809-12010188 7.8e-05 50_[+1]_22 chr11:560854-560934 7.8e-05 5_[+1]_67 chr5:172484181-172484261 7.8e-05 36_[+1]_36 chr14:21737663-21737743 9e-05 52_[+1]_20 chr7:8008269-8008349 9e-05 39_[+1]_33 chr19:54641275-54641355 0.0001 2_[+1]_70 chr11:65601277-65601357 0.0001 68_[+1]_4 chr7:30066407-30066487 0.00011 5_[+1]_67 chr14:23790568-23790648 0.00013 [+1]_72 chr19:17420241-17420321 0.00013 27_[+1]_45 chr19:47551913-47551993 0.00015 63_[+1]_9 chr1:151682824-151682904 0.00015 32_[+1]_40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAATSAG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCAATSAG width=8 seqs=44 chr19:33462919-33462999 ( 26) CCAATCAG 1 chr19:46498617-46498697 ( 58) CCAATCAG 1 chr8:11660048-11660128 ( 70) CCAATCAG 1 chr11:17298174-17298254 ( 36) CCAATCAG 1 chr3:113415586-113415666 ( 8) CCAATCAG 1 chr14:104181825-10418190 ( 25) CCAATCAG 1 chr12:109535802-10953588 ( 71) CCAATCAG 1 chr19:1507835-1507915 ( 73) CCAATCAG 1 chr17:38574259-38574339 ( 45) CCAATCAG 1 chr12:113658958-11365903 ( 9) CCAATCAG 1 chr11:59383430-59383510 ( 13) CCAATCAG 1 chr17:58213089-58213169 ( 2) CCAATCAG 1 chr19:19174655-19174735 ( 10) CCAATCAG 1 chr17:4870667-4870747 ( 54) CCAATCAG 1 chr12:53473217-53473297 ( 10) CCAATCAG 1 chr19:36193354-36193434 ( 8) CCAATCAG 1 chr19:18315092-18315172 ( 44) CCAATCAG 1 chr11:68228054-68228134 ( 59) CCAATGAG 1 chr16:50059003-50059083 ( 70) CCAATGAG 1 chr2:88927166-88927246 ( 6) CCAATGAG 1 chr19:41082685-41082765 ( 43) CCAATGAG 1 chr11:63953459-63953539 ( 59) CCAATGAG 1 chr19:17414255-17414335 ( 71) CCAATGAG 1 chr1:151254553-151254633 ( 31) CCAATGAG 1 chr6:43142460-43142540 ( 47) CCAATCAA 1 chr19:36248884-36248964 ( 4) CCAATCAA 1 chr3:127309624-127309704 ( 65) CCAATCAA 1 chr19:18303767-18303847 ( 8) CCAATCGG 1 chr9:139780749-139780829 ( 7) CCAATCGG 1 chr19:6424958-6425038 ( 3) CCAATCGG 1 chr19:45394299-45394379 ( 6) CCAATGGG 1 chr12:56211723-56211803 ( 41) CCAATGGG 1 chr10:120101809-12010188 ( 51) CCAATGGG 1 chr11:560854-560934 ( 6) CCAATGGG 1 chr5:172484181-172484261 ( 37) CCAATGGG 1 chr14:21737663-21737743 ( 53) CCAATCAC 1 chr7:8008269-8008349 ( 40) CCAATCAC 1 chr19:54641275-54641355 ( 3) CCAATCGA 1 chr11:65601277-65601357 ( 69) CCAATCGA 1 chr7:30066407-30066487 ( 6) CCAATGAC 1 chr14:23790568-23790648 ( 1) CCAATGGA 1 chr19:17420241-17420321 ( 28) CCAATGGA 1 chr19:47551913-47551993 ( 64) CCACTCAG 1 chr1:151682824-151682904 ( 33) CCACTCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAATSAG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.72094 E= 5.1e-027 -1210 169 -1210 -1210 -1210 169 -1210 -1210 241 -1210 -1210 -1210 234 -277 -1210 -1210 -1210 -1210 -1210 244 -1210 109 11 -1210 195 -1210 -21 -1210 -24 -219 129 -1210 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAATSAG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 44 E= 5.1e-027 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.954545 0.045455 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.659091 0.340909 0.000000 0.727273 0.000000 0.272727 0.000000 0.159091 0.068182 0.772727 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAATSAG MEME-1 regular expression -------------------------------------------------------------------------------- CCAAT[CG][AG]G -------------------------------------------------------------------------------- Time 5.06 secs. ******************************************************************************** ******************************************************************************** MOTIF CGGGTTTT MEME-2 width = 8 sites = 45 llr = 386 E-value = 4.3e-017 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGGGTTTT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :2::2::: pos.-specific C a11:11:: probability G :68a:::: matrix T :1::79aa bits 2.4 ** 2.2 ** 1.9 ** 1.7 * *** Relative 1.5 * * *** Entropy 1.2 * ***** (12.4 bits) 1.0 * ****** 0.7 * ****** 0.5 * ****** 0.2 ******** 0.0 -------- Multilevel CGGGTTTT consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGTTTT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr16:23706404-23706484 21 1.15e-05 GATCCAGGTC CGGGTTTT CTACGTACTG chr4:170947608-170947688 41 1.15e-05 GTGTAGCCGC CGGGTTTT CGCGGCAgcc chr20:10414915-10414995 8 1.15e-05 GCTTCTC CGGGTTTT CCGTGAAGCT chr3:152879264-152879344 49 1.15e-05 ATCCGGTCTC CGGGTTTT GACCGCACTC chr8:33330696-33330776 47 1.15e-05 AGCCTGGATC CGGGTTTT CACTCGTGCC chr1:197170651-197170731 26 1.15e-05 TCCGTTACTC CGGGTTTT CGCAGTGGCT chr11:61348964-61349044 3 1.15e-05 TC CGGGTTTT CCGCTTGCTG chr5:177540527-177540607 3 1.15e-05 GC CGGGTTTT CCCTCCGCCT chr13:77901326-77901406 57 1.15e-05 TCCACTTCTC CGGGTTTT ACTGGCAGCT chr21:43299148-43299228 11 1.15e-05 GAAATCCAGC CGGGTTTT GACTCCGATC chr22:38852127-38852207 2 1.15e-05 C CGGGTTTT CCTCCTCGCC chr15:70403773-70403853 36 1.15e-05 GACTCCAGTA CGGGTTTT CCAGCCAGCC chr9:2241992-2242072 11 1.15e-05 AGATCCACTC CGGGTTTT GCCTAGCGCT chr2:169655007-169655087 41 1.84e-05 GAATCCGTTG CAGGTTTT CTTTCTGCAG chr6:53409869-53409949 49 1.84e-05 TCCTGCGCTC CAGGTTTT ATAGACTACG chr12:57325310-57325390 16 2.51e-05 aggtccagtc ctggtttt acctccagcc chr12:57853461-57853541 53 3.68e-05 AAATCCAAGC CGGGATTT AGTACTCACC chr1:160001797-160001877 4 3.68e-05 AGG CGGGATTT CCGGTCCGTG chr15:99191609-99191689 34 5.52e-05 GAACCGGGCT CCGGTTTT TTgcgcgcgc chr20:10415180-10415260 49 5.52e-05 TCTGGAAAAT CAGGATTT TTACTCTCCC chr17:7620614-7620694 2 5.52e-05 C CCGGTTTT TCCCCCGGAT chr4:26322292-26322372 16 5.52e-05 GTAATCCCCT CCGGTTTT CCTCAGTCTC chr1:27668418-27668498 43 5.52e-05 GAGTCCAGGC CCGGTTTT GCATCAGGCC chrX:65383972-65384052 38 5.52e-05 AGATCCTAAC CAGGATTT GTAAAACACC chr6:157098420-157098500 19 6.65e-05 GAGTCCAGTC CGCGTTTT GCGAGTGCGC chr8:28259382-28259462 6 6.65e-05 GGCGC CGCGTTTT CCCGGCCGCC chr10:70319999-70320079 38 6.65e-05 AAATCCAGCT CGCGTTTT GTCTCTCGCT chr17:2304919-2304999 14 6.65e-05 AGTCCGGCTC CGCGTTTT GTCTCCGTTC chr9:140117980-140118060 30 9.93e-05 ACATCCGAAC CGGGTCTT TCGGGAAACC chr1:220263206-220263286 52 9.93e-05 TCCACTTGTC CGTGTTTT CTCCAAGCTC chr20:48552750-48552830 35 9.93e-05 ATTTGGCTTC CACGTTTT CCAGATTTCC chr15:85523613-85523693 47 9.93e-05 AGCACGCCTC CGGGTCTT TGCAGTAGCC chr22:38857668-38857748 21 9.93e-05 ATCCGGGCTC CGGGTCTT CGTTCGCGCC chr8:141474529-141474609 54 1.06e-04 TCCCGGAGCA CTGGATTT CCCAGAGGCG chr15:70394038-70394118 32 1.06e-04 AAAGCCCGGC CTGGATTT ACAGAGCAGC chr11:47969824-47969904 35 1.06e-04 aaagtctggg ctggattt agggagctgc chr5:77590604-77590684 34 1.26e-04 TTTCCTGCTC CGGGCTTT AGAGGTAGCT chr19:46149462-46149542 7 1.26e-04 CCAGTC CGGGCTTT GGCACAGGCC chr6:31831475-31831555 40 1.41e-04 TGTTCCGCTC CAGGTCTT CCACTGAGCC chr7:150707510-150707590 38 1.41e-04 CTGGATTCTC CAGGTCTT AGAGAAAACT chr9:38069764-38069844 39 1.41e-04 CCCCGTGCGC CAGGTCTT CGGAGGAATC chr19:55690234-55690314 52 1.53e-04 GAATCCTGGC CAGGCTTT CTCTCTGCTC chrX:129300165-129300245 17 2.08e-04 GATCCAGATC CAGTTTTT CCATGAGTCC chr1:17566023-17566103 39 2.20e-04 TTCTCAGTCT CTGGCTTT CTCTGTCCTG chr5:77655756-77655836 37 2.64e-04 GGCTGCTCTC CGTGATTT AGCAGCAACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGTTTT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:23706404-23706484 1.1e-05 20_[+2]_52 chr4:170947608-170947688 1.1e-05 40_[+2]_32 chr20:10414915-10414995 1.1e-05 7_[+2]_65 chr3:152879264-152879344 1.1e-05 48_[+2]_24 chr8:33330696-33330776 1.1e-05 46_[+2]_26 chr1:197170651-197170731 1.1e-05 25_[+2]_47 chr11:61348964-61349044 1.1e-05 2_[+2]_70 chr5:177540527-177540607 1.1e-05 2_[+2]_70 chr13:77901326-77901406 1.1e-05 56_[+2]_16 chr21:43299148-43299228 1.1e-05 10_[+2]_62 chr22:38852127-38852207 1.1e-05 1_[+2]_71 chr15:70403773-70403853 1.1e-05 35_[+2]_37 chr9:2241992-2242072 1.1e-05 10_[+2]_62 chr2:169655007-169655087 1.8e-05 40_[+2]_32 chr6:53409869-53409949 1.8e-05 48_[+2]_24 chr12:57325310-57325390 2.5e-05 15_[+2]_57 chr12:57853461-57853541 3.7e-05 52_[+2]_20 chr1:160001797-160001877 3.7e-05 3_[+2]_69 chr15:99191609-99191689 5.5e-05 33_[+2]_39 chr20:10415180-10415260 5.5e-05 48_[+2]_24 chr17:7620614-7620694 5.5e-05 1_[+2]_71 chr4:26322292-26322372 5.5e-05 15_[+2]_57 chr1:27668418-27668498 5.5e-05 42_[+2]_30 chrX:65383972-65384052 5.5e-05 37_[+2]_35 chr6:157098420-157098500 6.6e-05 18_[+2]_54 chr8:28259382-28259462 6.6e-05 5_[+2]_67 chr10:70319999-70320079 6.6e-05 37_[+2]_35 chr17:2304919-2304999 6.6e-05 13_[+2]_59 chr9:140117980-140118060 9.9e-05 29_[+2]_43 chr1:220263206-220263286 9.9e-05 51_[+2]_21 chr20:48552750-48552830 9.9e-05 34_[+2]_38 chr15:85523613-85523693 9.9e-05 46_[+2]_26 chr22:38857668-38857748 9.9e-05 20_[+2]_52 chr8:141474529-141474609 0.00011 53_[+2]_19 chr15:70394038-70394118 0.00011 31_[+2]_41 chr11:47969824-47969904 0.00011 34_[+2]_38 chr5:77590604-77590684 0.00013 33_[+2]_39 chr19:46149462-46149542 0.00013 6_[+2]_66 chr6:31831475-31831555 0.00014 39_[+2]_33 chr7:150707510-150707590 0.00014 37_[+2]_35 chr9:38069764-38069844 0.00014 38_[+2]_34 chr19:55690234-55690314 0.00015 51_[+2]_21 chrX:129300165-129300245 0.00021 16_[+2]_56 chr1:17566023-17566103 0.00022 38_[+2]_34 chr5:77655756-77655836 0.00026 36_[+2]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGTTTT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGGGTTTT width=8 seqs=45 chr16:23706404-23706484 ( 21) CGGGTTTT 1 chr4:170947608-170947688 ( 41) CGGGTTTT 1 chr20:10414915-10414995 ( 8) CGGGTTTT 1 chr3:152879264-152879344 ( 49) CGGGTTTT 1 chr8:33330696-33330776 ( 47) CGGGTTTT 1 chr1:197170651-197170731 ( 26) CGGGTTTT 1 chr11:61348964-61349044 ( 3) CGGGTTTT 1 chr5:177540527-177540607 ( 3) CGGGTTTT 1 chr13:77901326-77901406 ( 57) CGGGTTTT 1 chr21:43299148-43299228 ( 11) CGGGTTTT 1 chr22:38852127-38852207 ( 2) CGGGTTTT 1 chr15:70403773-70403853 ( 36) CGGGTTTT 1 chr9:2241992-2242072 ( 11) CGGGTTTT 1 chr2:169655007-169655087 ( 41) CAGGTTTT 1 chr6:53409869-53409949 ( 49) CAGGTTTT 1 chr12:57325310-57325390 ( 16) CTGGTTTT 1 chr12:57853461-57853541 ( 53) CGGGATTT 1 chr1:160001797-160001877 ( 4) CGGGATTT 1 chr15:99191609-99191689 ( 34) CCGGTTTT 1 chr20:10415180-10415260 ( 49) CAGGATTT 1 chr17:7620614-7620694 ( 2) CCGGTTTT 1 chr4:26322292-26322372 ( 16) CCGGTTTT 1 chr1:27668418-27668498 ( 43) CCGGTTTT 1 chrX:65383972-65384052 ( 38) CAGGATTT 1 chr6:157098420-157098500 ( 19) CGCGTTTT 1 chr8:28259382-28259462 ( 6) CGCGTTTT 1 chr10:70319999-70320079 ( 38) CGCGTTTT 1 chr17:2304919-2304999 ( 14) CGCGTTTT 1 chr9:140117980-140118060 ( 30) CGGGTCTT 1 chr1:220263206-220263286 ( 52) CGTGTTTT 1 chr20:48552750-48552830 ( 35) CACGTTTT 1 chr15:85523613-85523693 ( 47) CGGGTCTT 1 chr22:38857668-38857748 ( 21) CGGGTCTT 1 chr8:141474529-141474609 ( 54) CTGGATTT 1 chr15:70394038-70394118 ( 32) CTGGATTT 1 chr11:47969824-47969904 ( 35) CTGGATTT 1 chr5:77590604-77590684 ( 34) CGGGCTTT 1 chr19:46149462-46149542 ( 7) CGGGCTTT 1 chr6:31831475-31831555 ( 40) CAGGTCTT 1 chr7:150707510-150707590 ( 38) CAGGTCTT 1 chr9:38069764-38069844 ( 39) CAGGTCTT 1 chr19:55690234-55690314 ( 52) CAGGCTTT 1 chrX:129300165-129300245 ( 17) CAGTTTTT 1 chr1:17566023-17566103 ( 39) CTGGCTTT 1 chr5:77655756-77655836 ( 37) CGTGATTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGTTTT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2095 E= 4.3e-017 -1214 169 -1214 -1214 24 -180 87 -73 -1214 -148 142 -205 -1214 -1214 163 -305 -8 -180 -1214 199 -1214 -122 -1214 223 -1214 -1214 -1214 244 -1214 -1214 -1214 244 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGTTTT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 45 E= 4.3e-017 0.000000 1.000000 0.000000 0.000000 0.222222 0.088889 0.577778 0.111111 0.000000 0.111111 0.844444 0.044444 0.000000 0.000000 0.977778 0.022222 0.177778 0.088889 0.000000 0.733333 0.000000 0.133333 0.000000 0.866667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGGTTTT MEME-2 regular expression -------------------------------------------------------------------------------- C[GA]GGTTTT -------------------------------------------------------------------------------- Time 8.83 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAACCCG MEME-3 width = 8 sites = 31 llr = 297 E-value = 7.5e-016 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAACCCG MEME-3 Description -------------------------------------------------------------------------------- Simplified A aaa5::1: pos.-specific C ::::aa7: probability G :::2:::a matrix T :::2::2: bits 2.4 *** 2.2 *** 1.9 *** 1.7 *** ** * Relative 1.5 *** ** * Entropy 1.2 *** ** * (13.8 bits) 1.0 *** ** * 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAAACCCG consensus G sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACCCG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:57856249-57856329 25 1.21e-05 GGGAGACTGG AAAACCCG GGATGGAGTC chr4:141075376-141075456 42 1.21e-05 GACACGGCGC AAAACCCG GCCCGGACTC chr15:63796707-63796787 60 1.21e-05 GGCGGGCGAG AAAACCCG GCGTCCGGAA chr13:77903335-77903415 30 1.21e-05 GGGTACACTC AAAACCCG GAAACTGGAT chr1:51985123-51985203 47 1.21e-05 GCCGCCTTGG AAAACCCG GCGCGGACAT chr1:154973318-154973398 25 1.21e-05 GGCTGAGAAG AAAACCCG GAGCAGTGAT chr19:4581821-4581901 30 1.21e-05 GGAGCCGCGC AAAACCCG GCCCGGAGCA chr13:100153546-10015362 31 1.21e-05 TGGCGCGCGG AAAACCCG GAAAGTGGAT chr4:26322292-26322372 60 1.21e-05 AGCGCGTCCT AAAACCCG GATAACCGGA chr5:96271651-96271731 55 1.21e-05 AGCTGCCACG AAAACCCG GAACGGCGGA chr13:67804604-67804684 52 1.21e-05 GGCAGCAGCG AAAACCCG GAAATCTGAT chr4:170948502-170948582 31 1.21e-05 GGTTGCTGCG AAAACCCG GAAAGGTGGA chr1:10856748-10856828 65 1.21e-05 GGTGGCATGC AAAACCCG GGCCGGAT chr6:4648006-4648086 50 1.93e-05 GGGCAGAGGG AAAACCTG GAGAGATGGA chr1:46867932-46868012 42 1.93e-05 GGCTGTGGGG AAAACCTG GCCTGGAGTT chr19:12947221-12947301 65 1.93e-05 AGACAGAGGG AAAACCTG GTTTGGAT chr8:141474529-141474609 41 3.12e-05 GGCTGCGTGG AAATCCCG GAGCACTGGA chr7:30067892-30067972 44 3.12e-05 CGCTGCCGCG AAATCCCG GAGTGGATTT chr18:61034913-61034993 67 3.12e-05 CTACGCTCTG AAATCCCG GGCTCC chr12:57024150-57024230 36 5.89e-05 ACAGGGTCCT AAAGCCCG CCAGCCCATC chr15:70394038-70394118 22 5.89e-05 GGTGAGACAG AAAGCCCG GCCTGGATTT chr5:77656225-77656305 38 5.89e-05 GGTCGCAGCT AAAGCCCG GAGCGTGGGA chr12:75724119-75724199 64 5.89e-05 GGAAAGGGCC AAAGCCCG GCCCGGATC chr3:152879879-152879959 30 5.89e-05 GGCCCCGCGG AAAACCAG GAGCGGCCGC chr17:2304410-2304490 31 5.89e-05 GGCCACAGCC AAAGCCCG GACCGGAGCC chr19:7198139-7198219 24 5.89e-05 AGCGCAGCAC AAAGCCCG GGGCGCACTC chr17:7620614-7620694 44 6.59e-05 GGCTGCCTGG AAATCCTG GAACGCCTTC chr11:47969824-47969904 9 6.59e-05 cagggaca aaatcctg gagtcaggaa chr20:44509714-44509794 52 7.80e-05 CCGTGGTGCT AAAGCCTG AAAGCGAATT chr10:70319999-70320079 28 8.52e-05 CAGTTTGGGT AAATCCAG CTCGCGTTTT chr21:43299148-43299228 2 8.52e-05 G AAATCCAG CCGGGTTTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACCCG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:57856249-57856329 1.2e-05 24_[+3]_48 chr4:141075376-141075456 1.2e-05 41_[+3]_31 chr15:63796707-63796787 1.2e-05 59_[+3]_13 chr13:77903335-77903415 1.2e-05 29_[+3]_43 chr1:51985123-51985203 1.2e-05 46_[+3]_26 chr1:154973318-154973398 1.2e-05 24_[+3]_48 chr19:4581821-4581901 1.2e-05 29_[+3]_43 chr13:100153546-10015362 1.2e-05 30_[+3]_42 chr4:26322292-26322372 1.2e-05 59_[+3]_13 chr5:96271651-96271731 1.2e-05 54_[+3]_18 chr13:67804604-67804684 1.2e-05 51_[+3]_21 chr4:170948502-170948582 1.2e-05 30_[+3]_42 chr1:10856748-10856828 1.2e-05 64_[+3]_8 chr6:4648006-4648086 1.9e-05 49_[+3]_23 chr1:46867932-46868012 1.9e-05 41_[+3]_31 chr19:12947221-12947301 1.9e-05 64_[+3]_8 chr8:141474529-141474609 3.1e-05 40_[+3]_32 chr7:30067892-30067972 3.1e-05 43_[+3]_29 chr18:61034913-61034993 3.1e-05 66_[+3]_6 chr12:57024150-57024230 5.9e-05 35_[+3]_37 chr15:70394038-70394118 5.9e-05 21_[+3]_51 chr5:77656225-77656305 5.9e-05 37_[+3]_35 chr12:75724119-75724199 5.9e-05 63_[+3]_9 chr3:152879879-152879959 5.9e-05 29_[+3]_43 chr17:2304410-2304490 5.9e-05 30_[+3]_42 chr19:7198139-7198219 5.9e-05 23_[+3]_49 chr17:7620614-7620694 6.6e-05 43_[+3]_29 chr11:47969824-47969904 6.6e-05 8_[+3]_64 chr20:44509714-44509794 7.8e-05 51_[+3]_21 chr10:70319999-70320079 8.5e-05 27_[+3]_45 chr21:43299148-43299228 8.5e-05 1_[+3]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACCCG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAACCCG width=8 seqs=31 chr12:57856249-57856329 ( 25) AAAACCCG 1 chr4:141075376-141075456 ( 42) AAAACCCG 1 chr15:63796707-63796787 ( 60) AAAACCCG 1 chr13:77903335-77903415 ( 30) AAAACCCG 1 chr1:51985123-51985203 ( 47) AAAACCCG 1 chr1:154973318-154973398 ( 25) AAAACCCG 1 chr19:4581821-4581901 ( 30) AAAACCCG 1 chr13:100153546-10015362 ( 31) AAAACCCG 1 chr4:26322292-26322372 ( 60) AAAACCCG 1 chr5:96271651-96271731 ( 55) AAAACCCG 1 chr13:67804604-67804684 ( 52) AAAACCCG 1 chr4:170948502-170948582 ( 31) AAAACCCG 1 chr1:10856748-10856828 ( 65) AAAACCCG 1 chr6:4648006-4648086 ( 50) AAAACCTG 1 chr1:46867932-46868012 ( 42) AAAACCTG 1 chr19:12947221-12947301 ( 65) AAAACCTG 1 chr8:141474529-141474609 ( 41) AAATCCCG 1 chr7:30067892-30067972 ( 44) AAATCCCG 1 chr18:61034913-61034993 ( 67) AAATCCCG 1 chr12:57024150-57024230 ( 36) AAAGCCCG 1 chr15:70394038-70394118 ( 22) AAAGCCCG 1 chr5:77656225-77656305 ( 38) AAAGCCCG 1 chr12:75724119-75724199 ( 64) AAAGCCCG 1 chr3:152879879-152879959 ( 30) AAAACCAG 1 chr17:2304410-2304490 ( 31) AAAGCCCG 1 chr19:7198139-7198219 ( 24) AAAGCCCG 1 chr17:7620614-7620694 ( 44) AAATCCTG 1 chr11:47969824-47969904 ( 9) AAATCCTG 1 chr20:44509714-44509794 ( 52) AAAGCCTG 1 chr10:70319999-70320079 ( 28) AAATCCAG 1 chr21:43299148-43299228 ( 2) AAATCCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACCCG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.90618 E= 7.5e-016 241 -1160 -1160 -1160 241 -1160 -1160 -1160 241 -1160 -1160 -1160 154 -1160 -48 29 -1160 169 -1160 -1160 -1160 169 -1160 -1160 -96 119 -1160 7 -1160 -1160 166 -1160 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACCCG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 31 E= 7.5e-016 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.548387 0.000000 0.225806 0.225806 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.096774 0.709677 0.000000 0.193548 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAACCCG MEME-3 regular expression -------------------------------------------------------------------------------- AAA[AGT]CCCG -------------------------------------------------------------------------------- Time 12.57 secs. ******************************************************************************** ******************************************************************************** MOTIF CBATTGGY MEME-4 width = 8 sites = 45 llr = 384 E-value = 6.2e-016 ******************************************************************************** -------------------------------------------------------------------------------- Motif CBATTGGY MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::a::::1 pos.-specific C 74:::::6 probability G :4:::aa: matrix T 32:aa::3 bits 2.4 ** 2.2 *** 1.9 *** 1.7 ***** Relative 1.5 ***** Entropy 1.2 ***** (12.3 bits) 1.0 * ***** 0.7 * ****** 0.5 * ****** 0.2 ******** 0.0 -------- Multilevel CCATTGGC consensus TG T sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CBATTGGY MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:47551913-47551993 46 1.94e-05 AATGGCTTAC CCATTGGC TATGCGCTCG chr19:33462919-33462999 2 1.94e-05 G CCATTGGC TCAGCTCGGC chr6:80247186-80247266 9 1.94e-05 CCGAGCTC CCATTGGC TTCTGTCTCC chr10:105992118-10599219 28 1.94e-05 AGCCCCGCGC CCATTGGC TCTGCGCTTT chr14:23755421-23755501 15 1.94e-05 ACTGGGCTGG CCATTGGC TGCGTGGGTC chr16:57769282-57769362 53 1.94e-05 GTTGCTCAAG CCATTGGC GCAGCCGCCA chr19:14228637-14228717 2 1.94e-05 C CCATTGGC CCTCCCGCGA chr17:74137383-74137463 43 1.94e-05 TCCGCCTCTG CCATTGGC CAGCACGTCT chr11:14913846-14913926 19 1.94e-05 AGCTCCGTGG CCATTGGC TGACTGAGTG chr6:160183392-160183472 51 4.25e-05 CCTGCCTCTC CCATTGGT TGGCGTAGGG chr17:80656627-80656707 5 4.25e-05 CCCG CCATTGGT GGACCGCAGT chr22:21400077-21400157 50 4.25e-05 GAGCGCGTCG CTATTGGC TGTGGGGGGT chr19:42580149-42580229 28 4.25e-05 ACGCTCCTCA CTATTGGC CCAAGCCTCA chr20:17662974-17663054 3 4.25e-05 TC CCATTGGT CCGCACCCCG chr7:150707510-150707590 56 4.25e-05 AGAGAAAACT CTATTGGC CTGAACTGAG chr1:25757234-25757314 71 4.25e-05 CCGGTGGCTT CTATTGGC CT chr8:87354656-87354736 11 4.25e-05 CCCCTCCCTA CTATTGGC TGTCCGTCCC chr17:39943179-39943259 44 4.25e-05 AACATTGCAT CTATTGGC AGATAGAAAG chr20:40247061-40247141 62 4.25e-05 AAACACAGAC CCATTGGT CATCCCGGCT chr19:7894846-7894926 3 6.92e-05 TG CTATTGGT CTTATCAGGT chr15:98503715-98503795 29 6.92e-05 CGGAGCCTCC CGATTGGC CAACACTCCC chr2:73460457-73460537 43 6.92e-05 AGCCTACTTC CTATTGGT CGAGAGAAGT chr19:19174655-19174735 18 6.92e-05 TGCCAATCAG CGATTGGC TTTAGGGGCT chr11:67275737-67275817 46 6.92e-05 CAACCGCCGC CGATTGGC CTCCGCCTTC chr9:139743700-139743780 20 9.25e-05 AACTGGATTG CGATTGGT CAGCACGTGC chr19:18303767-18303847 45 9.25e-05 TTCTTTTTTC CGATTGGT CCGTGAAGCT chr20:44509714-44509794 34 9.25e-05 CGTCACGCTA CGATTGGT CCGTGGTGCT chr10:120101809-12010188 30 9.25e-05 TCGCGCCTTC TCATTGGC TCCTGCGTCT chr19:36193354-36193434 65 9.25e-05 CCCTGGCGTC TCATTGGC TATGCTTG chr11:59383430-59383510 35 1.06e-04 TTGGGGAAGC TCATTGGT GCTTTCCTGA chr8:11660048-11660128 33 1.22e-04 CTTCCGCGAC TGATTGGC CGGGGTCTTC chr3:88108211-88108291 60 1.22e-04 GGCATGAACA TGATTGGC AGCTTGCGTC chr19:14117144-14117224 36 1.22e-04 gggcccgggg TGATTGGC GGCGGCCGGA chr8:124073111-124073191 71 1.22e-04 CACTGGGTTC TGATTGGC TC chr12:122028228-12202830 28 1.29e-04 TACTCAATTG TGATTGGT TGACGATCCC chr2:88927166-88927246 42 1.29e-04 TCTTTTTACC TGATTGGT GCGCTCATCA chr17:47866542-47866622 54 1.29e-04 CCTCCTCTCC TGATTGGT CGAGGTTGGC chr20:56293657-56293737 33 1.48e-04 GAAGCACGAT CTATTGGA TACAAGTGCT chr15:75744246-75744326 6 1.48e-04 CCCGC CTATTGGA GACGGACTGC chr9:127905897-127905977 20 1.60e-04 ATCTGTCAGT CGATTGGA CGCTCGGCCC chr7:8008269-8008349 4 1.67e-04 TTG TCATTGGA CACTGCTTCT chr15:43213052-43213132 30 1.78e-04 CTACAGGTGC TGATTGGA GAGTGCGTTC chr19:2944997-2945077 19 1.78e-04 GTGGAGACTC TGATTGGA CAGTGCTGTC chr17:74667907-74667987 4 1.97e-04 AGG CCTTTGGC TTCGCGGCAG chr2:96917554-96917634 61 1.97e-04 ATGACCAGTC CCTTTGGC ATGCAGGTCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CBATTGGY MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:47551913-47551993 1.9e-05 45_[+4]_27 chr19:33462919-33462999 1.9e-05 1_[+4]_71 chr6:80247186-80247266 1.9e-05 8_[+4]_64 chr10:105992118-10599219 1.9e-05 27_[+4]_45 chr14:23755421-23755501 1.9e-05 14_[+4]_58 chr16:57769282-57769362 1.9e-05 52_[+4]_20 chr19:14228637-14228717 1.9e-05 1_[+4]_71 chr17:74137383-74137463 1.9e-05 42_[+4]_30 chr11:14913846-14913926 1.9e-05 18_[+4]_54 chr6:160183392-160183472 4.3e-05 50_[+4]_22 chr17:80656627-80656707 4.3e-05 4_[+4]_68 chr22:21400077-21400157 4.3e-05 49_[+4]_23 chr19:42580149-42580229 4.3e-05 27_[+4]_45 chr20:17662974-17663054 4.3e-05 2_[+4]_70 chr7:150707510-150707590 4.3e-05 55_[+4]_17 chr1:25757234-25757314 4.3e-05 70_[+4]_2 chr8:87354656-87354736 4.3e-05 10_[+4]_62 chr17:39943179-39943259 4.3e-05 43_[+4]_29 chr20:40247061-40247141 4.3e-05 61_[+4]_11 chr19:7894846-7894926 6.9e-05 2_[+4]_70 chr15:98503715-98503795 6.9e-05 28_[+4]_44 chr2:73460457-73460537 6.9e-05 42_[+4]_30 chr19:19174655-19174735 6.9e-05 17_[+4]_55 chr11:67275737-67275817 6.9e-05 45_[+4]_27 chr9:139743700-139743780 9.2e-05 19_[+4]_53 chr19:18303767-18303847 9.2e-05 44_[+4]_28 chr20:44509714-44509794 9.2e-05 33_[+4]_39 chr10:120101809-12010188 9.2e-05 29_[+4]_43 chr19:36193354-36193434 9.2e-05 64_[+4]_8 chr11:59383430-59383510 0.00011 34_[+4]_38 chr8:11660048-11660128 0.00012 32_[+4]_40 chr3:88108211-88108291 0.00012 59_[+4]_13 chr19:14117144-14117224 0.00012 35_[+4]_37 chr8:124073111-124073191 0.00012 70_[+4]_2 chr12:122028228-12202830 0.00013 27_[+4]_45 chr2:88927166-88927246 0.00013 41_[+4]_31 chr17:47866542-47866622 0.00013 53_[+4]_19 chr20:56293657-56293737 0.00015 32_[+4]_40 chr15:75744246-75744326 0.00015 5_[+4]_67 chr9:127905897-127905977 0.00016 19_[+4]_53 chr7:8008269-8008349 0.00017 3_[+4]_69 chr15:43213052-43213132 0.00018 29_[+4]_43 chr19:2944997-2945077 0.00018 18_[+4]_54 chr17:74667907-74667987 0.0002 3_[+4]_69 chr2:96917554-96917634 0.0002 60_[+4]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CBATTGGY MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CBATTGGY width=8 seqs=45 chr19:47551913-47551993 ( 46) CCATTGGC 1 chr19:33462919-33462999 ( 2) CCATTGGC 1 chr6:80247186-80247266 ( 9) CCATTGGC 1 chr10:105992118-10599219 ( 28) CCATTGGC 1 chr14:23755421-23755501 ( 15) CCATTGGC 1 chr16:57769282-57769362 ( 53) CCATTGGC 1 chr19:14228637-14228717 ( 2) CCATTGGC 1 chr17:74137383-74137463 ( 43) CCATTGGC 1 chr11:14913846-14913926 ( 19) CCATTGGC 1 chr6:160183392-160183472 ( 51) CCATTGGT 1 chr17:80656627-80656707 ( 5) CCATTGGT 1 chr22:21400077-21400157 ( 50) CTATTGGC 1 chr19:42580149-42580229 ( 28) CTATTGGC 1 chr20:17662974-17663054 ( 3) CCATTGGT 1 chr7:150707510-150707590 ( 56) CTATTGGC 1 chr1:25757234-25757314 ( 71) CTATTGGC 1 chr8:87354656-87354736 ( 11) CTATTGGC 1 chr17:39943179-39943259 ( 44) CTATTGGC 1 chr20:40247061-40247141 ( 62) CCATTGGT 1 chr19:7894846-7894926 ( 3) CTATTGGT 1 chr15:98503715-98503795 ( 29) CGATTGGC 1 chr2:73460457-73460537 ( 43) CTATTGGT 1 chr19:19174655-19174735 ( 18) CGATTGGC 1 chr11:67275737-67275817 ( 46) CGATTGGC 1 chr9:139743700-139743780 ( 20) CGATTGGT 1 chr19:18303767-18303847 ( 45) CGATTGGT 1 chr20:44509714-44509794 ( 34) CGATTGGT 1 chr10:120101809-12010188 ( 30) TCATTGGC 1 chr19:36193354-36193434 ( 65) TCATTGGC 1 chr11:59383430-59383510 ( 35) TCATTGGT 1 chr8:11660048-11660128 ( 33) TGATTGGC 1 chr3:88108211-88108291 ( 60) TGATTGGC 1 chr19:14117144-14117224 ( 36) TGATTGGC 1 chr8:124073111-124073191 ( 71) TGATTGGC 1 chr12:122028228-12202830 ( 28) TGATTGGT 1 chr2:88927166-88927246 ( 42) TGATTGGT 1 chr17:47866542-47866622 ( 54) TGATTGGT 1 chr20:56293657-56293737 ( 33) CTATTGGA 1 chr15:75744246-75744326 ( 6) CTATTGGA 1 chr9:127905897-127905977 ( 20) CGATTGGA 1 chr7:8008269-8008349 ( 4) TCATTGGA 1 chr15:43213052-43213132 ( 30) TGATTGGA 1 chr19:2944997-2945077 ( 19) TGATTGGA 1 chr17:74667907-74667987 ( 4) CCTTTGGC 1 chr2:96917554-96917634 ( 61) CCTTTGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CBATTGGY MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.04017 E= 6.2e-016 -1214 119 -1214 64 -1214 44 17 27 234 -1214 -1214 -205 -1214 -1214 -1214 244 -1214 -1214 -1214 244 -1214 -1214 166 -1214 -1214 -1214 166 -1214 -50 90 -1214 64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CBATTGGY MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 45 E= 6.2e-016 0.000000 0.711111 0.000000 0.288889 0.000000 0.422222 0.355556 0.222222 0.955556 0.000000 0.000000 0.044444 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.133333 0.577778 0.000000 0.288889 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CBATTGGY MEME-4 regular expression -------------------------------------------------------------------------------- [CT][CGT]ATTGG[CT] -------------------------------------------------------------------------------- Time 16.18 secs. ******************************************************************************** ******************************************************************************** MOTIF YARCCAAT MEME-5 width = 8 sites = 26 llr = 229 E-value = 9.8e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif YARCCAAT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :73::9a: pos.-specific C 52:aa::: probability G 127::::: matrix T 4::::1:a bits 2.4 ** 2.2 ** 1.9 *** 1.7 ***** Relative 1.5 ***** Entropy 1.2 ***** (12.7 bits) 1.0 ******* 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAGCCAAT consensus T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YARCCAAT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr10:80828599-80828679 72 7.06e-06 GGAAATAGAA TAGCCAAT G chr3:113415586-113415666 37 7.06e-06 GCTGCCGTGG TAGCCAAT AAGAAGACAG chr19:1507835-1507915 28 7.06e-06 AATCTGTCAG TAGCCAAT CAGGATGAGG chr14:104181825-10418190 64 1.13e-05 ACTGACTAAC TAACCAAT CCAAAGTCT chr16:30382011-30382091 42 1.13e-05 ACGAAAGAAA TAACCAAT AGAAACGCAG chr22:35696165-35696245 67 2.32e-05 GCCCACGGCG CAGCCAAT GTGCGT chr16:50059003-50059083 26 2.32e-05 GTGCAAGAGA CAGCCAAT AGAAAGCTGT chr11:560854-560934 45 2.32e-05 CCGCGCTGAG CAGCCAAT AGGGGTGCTA chr19:36248884-36248964 40 2.32e-05 GCAGTCGTCC CAGCCAAT CCTGAAACAC chr15:69113259-69113339 63 2.32e-05 CTCCGGGCAA CAGCCAAT GGCAGTGGCG chr11:65601277-65601357 36 2.32e-05 ACAGACAATG CAGCCAAT GGCGTCACGC chr5:32313295-32313375 47 3.03e-05 ATGTTTCCTC CAACCAAT CCAGAGAGCG chr19:19174655-19174735 53 5.39e-05 TGCTTCATAC TCGCCAAT CACTGTCGCT chr12:53473217-53473297 47 5.39e-05 GCACCTGCAG GAGCCAAT CGGAAGGCGC chr5:177540527-177540607 61 5.39e-05 CGTCCCTCCC TCGCCAAT CCGGCTccgg chr19:45394299-45394379 51 6.81e-05 CTGCGAGTGA GAACCAAT ACAAAAGGAC chr3:88108211-88108291 27 6.81e-05 ACTGTCGATT TCACCAAT AGTAGTGGAA chr12:113658958-11365903 38 6.81e-05 TTTTGACCTT TCACCAAT GGAAAGACTT chr19:54641275-54641355 71 6.81e-05 TCCCTGCCAG GAACCAAT AG chr6:43142460-43142540 1 7.99e-05 . TGGCCAAT GGGAGGAAGC chr11:17298174-17298254 1 1.07e-04 . CCGCCAAT CGGCGTCGTC chr20:56293657-56293737 59 1.38e-04 CTGGTGGCCT CGGCCAAT GGTGGGAGAG chr14:96001162-96001242 18 1.50e-04 CGGTTGCCGA CGACCAAT AGTAAGGCAG chr17:58213089-58213169 33 1.50e-04 CCGGCAGGGA CGACCAAT CGACTTATCC chr19:41082685-41082765 51 1.73e-04 GCCCAATGAG CAGCCTAT GGAGGCGGGG chr3:127309624-127309704 11 1.73e-04 TAACCTCCAG CAGCCTAT AGGAATAAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YARCCAAT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:80828599-80828679 7.1e-06 71_[+5]_1 chr3:113415586-113415666 7.1e-06 36_[+5]_36 chr19:1507835-1507915 7.1e-06 27_[+5]_45 chr14:104181825-10418190 1.1e-05 63_[+5]_9 chr16:30382011-30382091 1.1e-05 41_[+5]_31 chr22:35696165-35696245 2.3e-05 66_[+5]_6 chr16:50059003-50059083 2.3e-05 25_[+5]_47 chr11:560854-560934 2.3e-05 44_[+5]_28 chr19:36248884-36248964 2.3e-05 39_[+5]_33 chr15:69113259-69113339 2.3e-05 62_[+5]_10 chr11:65601277-65601357 2.3e-05 35_[+5]_37 chr5:32313295-32313375 3e-05 46_[+5]_26 chr19:19174655-19174735 5.4e-05 52_[+5]_20 chr12:53473217-53473297 5.4e-05 46_[+5]_26 chr5:177540527-177540607 5.4e-05 60_[+5]_12 chr19:45394299-45394379 6.8e-05 50_[+5]_22 chr3:88108211-88108291 6.8e-05 26_[+5]_46 chr12:113658958-11365903 6.8e-05 37_[+5]_35 chr19:54641275-54641355 6.8e-05 70_[+5]_2 chr6:43142460-43142540 8e-05 [+5]_72 chr11:17298174-17298254 0.00011 [+5]_72 chr20:56293657-56293737 0.00014 58_[+5]_14 chr14:96001162-96001242 0.00015 17_[+5]_55 chr17:58213089-58213169 0.00015 32_[+5]_40 chr19:41082685-41082765 0.00017 50_[+5]_22 chr3:127309624-127309704 0.00017 10_[+5]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YARCCAAT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YARCCAAT width=8 seqs=26 chr10:80828599-80828679 ( 72) TAGCCAAT 1 chr3:113415586-113415666 ( 37) TAGCCAAT 1 chr19:1507835-1507915 ( 28) TAGCCAAT 1 chr14:104181825-10418190 ( 64) TAACCAAT 1 chr16:30382011-30382091 ( 42) TAACCAAT 1 chr22:35696165-35696245 ( 67) CAGCCAAT 1 chr16:50059003-50059083 ( 26) CAGCCAAT 1 chr11:560854-560934 ( 45) CAGCCAAT 1 chr19:36248884-36248964 ( 40) CAGCCAAT 1 chr15:69113259-69113339 ( 63) CAGCCAAT 1 chr11:65601277-65601357 ( 36) CAGCCAAT 1 chr5:32313295-32313375 ( 47) CAACCAAT 1 chr19:19174655-19174735 ( 53) TCGCCAAT 1 chr12:53473217-53473297 ( 47) GAGCCAAT 1 chr5:177540527-177540607 ( 61) TCGCCAAT 1 chr19:45394299-45394379 ( 51) GAACCAAT 1 chr3:88108211-88108291 ( 27) TCACCAAT 1 chr12:113658958-11365903 ( 38) TCACCAAT 1 chr19:54641275-54641355 ( 71) GAACCAAT 1 chr6:43142460-43142540 ( 1) TGGCCAAT 1 chr11:17298174-17298254 ( 1) CCGCCAAT 1 chr20:56293657-56293737 ( 59) CGGCCAAT 1 chr14:96001162-96001242 ( 18) CGACCAAT 1 chr17:58213089-58213169 ( 33) CGACCAAT 1 chr19:41082685-41082765 ( 51) CAGCCTAT 1 chr3:127309624-127309704 ( 11) CAGCCTAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YARCCAAT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.98426 E= 9.8e-001 -1134 69 -145 106 179 -69 -104 -1134 88 -1134 105 -1134 -1134 169 -1134 -1134 -1134 169 -1134 -1134 229 -1134 -1134 -126 241 -1134 -1134 -1134 -1134 -1134 -1134 244 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YARCCAAT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 9.8e-001 0.000000 0.500000 0.115385 0.384615 0.653846 0.192308 0.153846 0.000000 0.346154 0.000000 0.653846 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.923077 0.000000 0.000000 0.076923 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YARCCAAT MEME-5 regular expression -------------------------------------------------------------------------------- [CT]A[GA]CCAAT -------------------------------------------------------------------------------- Time 19.70 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:2241992-2242072 3.73e-03 10_[+2(1.15e-05)]_62 chr2:96917554-96917634 5.96e-02 80 chr1:10739800-10739880 3.39e-01 80 chr8:127570636-127570716 6.07e-01 80 chr19:7198139-7198219 2.83e-01 23_[+3(5.89e-05)]_49 chr19:55690234-55690314 5.77e-02 80 chr17:2304410-2304490 6.59e-02 30_[+3(5.89e-05)]_42 chr15:70403773-70403853 4.57e-02 35_[+2(1.15e-05)]_37 chr22:38852127-38852207 1.08e-02 1_[+2(1.15e-05)]_51_[+2(1.15e-05)]_\ 12 chr1:10856748-10856828 6.87e-02 64_[+3(1.21e-05)]_8 chr18:61034913-61034993 1.61e-01 66_[+3(3.12e-05)]_6 chr16:759705-759785 3.54e-01 80 chr9:3525875-3525955 8.84e-01 80 chr20:16554085-16554165 7.29e-01 80 chr19:12947221-12947301 1.17e-02 64_[+3(1.93e-05)]_8 chrX:65383972-65384052 1.24e-02 37_[+2(5.52e-05)]_35 chr3:155462871-155462951 4.69e-01 80 chr5:179233918-179233998 9.69e-01 80 chr4:170948502-170948582 5.10e-02 30_[+3(1.21e-05)]_42 chr1:220267316-220267396 9.52e-01 80 chr7:66395436-66395516 9.56e-01 80 chr15:44580732-44580812 1.00e+00 80 chr21:43299148-43299228 3.90e-04 1_[+3(8.52e-05)]_1_[+2(1.15e-05)]_\ 62 chr22:38859470-38859550 7.37e-01 80 chr12:53297292-53297372 3.02e-01 80 chr13:77901326-77901406 5.73e-02 56_[+2(1.15e-05)]_16 chr1:27668418-27668498 2.67e-01 42_[+2(5.52e-05)]_30 chr3:152879879-152879959 1.17e-01 29_[+3(5.89e-05)]_43 chr11:14913846-14913926 8.12e-03 18_[+4(1.94e-05)]_54 chr17:36754963-36755043 9.93e-01 80 chr5:77655756-77655836 2.81e-01 80 chr10:99599985-99600065 8.82e-01 80 chr8:124073111-124073191 7.10e-02 80 chr3:49171104-49171184 2.51e-01 80 chr12:75724119-75724199 6.76e-02 63_[+3(5.89e-05)]_9 chr22:38857668-38857748 1.68e-01 20_[+2(9.93e-05)]_52 chr2:65662931-65663011 6.60e-01 80 chr17:74137383-74137463 1.01e-02 42_[+4(1.94e-05)]_30 chr22:39925301-39925381 1.33e-02 80 chr20:40247061-40247141 2.79e-03 61_[+4(4.25e-05)]_11 chr1:204662159-204662239 3.35e-01 80 chr7:30067892-30067972 5.23e-02 43_[+3(3.12e-05)]_29 chrX:129300165-129300245 1.13e-01 80 chr8:145159249-145159329 8.48e-02 80 chr11:65601277-65601357 1.06e-03 35_[+5(2.32e-05)]_37 chr1:160001797-160001877 8.83e-03 3_[+2(3.68e-05)]_69 chr5:177540527-177540607 5.78e-05 2_[+2(1.15e-05)]_50_[+5(5.39e-05)]_\ 12 chrX:70474062-70474142 6.21e-01 80 chr22:21996447-21996527 4.50e-01 80 chr14:94492603-94492683 2.98e-01 80 chr13:67804604-67804684 4.56e-02 51_[+3(1.21e-05)]_21 chr10:89622174-89622254 9.53e-01 80 chr19:54641275-54641355 2.65e-03 70_[+5(6.81e-05)]_2 chr5:96271651-96271731 2.20e-02 54_[+3(1.21e-05)]_18 chr1:859206-859286 9.25e-01 80 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