******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/NELFE.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr13:111367592-11136767 1.0000 80 chr1:17223041-17223121 1.0000 80 chr1:45285085-45285165 1.0000 80 chrX:136520467-136520547 1.0000 80 chr20:48599537-48599617 1.0000 80 chr1:118148698-118148778 1.0000 80 chr6:31795532-31795612 1.0000 80 chrX:12993213-12993293 1.0000 80 chr17:79008954-79009034 1.0000 80 chr20:43976955-43977035 1.0000 80 chr17:48943610-48943690 1.0000 80 chr7:5632472-5632552 1.0000 80 chr1:46598114-46598194 1.0000 80 chr17:7387726-7387806 1.0000 80 chr18:57567259-57567339 1.0000 80 chr1:144534768-144534848 1.0000 80 chr19:2051085-2051165 1.0000 80 chr22:41842685-41842765 1.0000 80 chr1:28975583-28975663 1.0000 80 chr5:137801180-137801260 1.0000 80 chr20:57464242-57464322 1.0000 80 chr11:62608674-62608754 1.0000 80 chr8:128748569-128748649 1.0000 80 chr17:73150481-73150561 1.0000 80 chr2:33141311-33141391 1.0000 80 chr11:64645986-64646066 1.0000 80 chr2:30454388-30454468 1.0000 80 chr11:122932777-12293285 1.0000 80 chr3:49058849-49058929 1.0000 80 chr17:39845065-39845145 1.0000 80 chrX:41193392-41193472 1.0000 80 chr17:56409754-56409834 1.0000 80 chr2:191745555-191745635 1.0000 80 chr4:127877251-127877331 1.0000 80 chr14:90863377-90863457 1.0000 80 chr16:2955290-2955370 1.0000 80 chr17:27621101-27621181 1.0000 80 chr1:86046417-86046497 1.0000 80 chr4:87927890-87927970 1.0000 80 chr19:6531017-6531097 1.0000 80 chr12:6579730-6579810 1.0000 80 chr3:129035045-129035125 1.0000 80 chr4:100871331-100871411 1.0000 80 chr5:137673960-137674040 1.0000 80 chr17:5522622-5522702 1.0000 80 chr1:59249589-59249669 1.0000 80 chr17:62502305-62502385 1.0000 80 chr6:86388396-86388476 1.0000 80 chr6:31783339-31783419 1.0000 80 chr5:172198059-172198139 1.0000 80 chr7:119547348-119547428 1.0000 80 chr2:8822226-8822306 1.0000 80 chr2:113403501-113403581 1.0000 80 chr6:27861177-27861257 1.0000 80 chr17:56708716-56708796 1.0000 80 chr7:112090512-112090592 1.0000 80 chr6:32940017-32940097 1.0000 80 chr11:5526820-5526900 1.0000 80 chr11:10830407-10830487 1.0000 80 chr9:139622525-139622605 1.0000 80 chr8:61193901-61193981 1.0000 80 chr2:85766313-85766393 1.0000 80 chr1:149223600-149223680 1.0000 80 chr17:56736189-56736269 1.0000 80 chr11:68452023-68452103 1.0000 80 chr17:75954444-75954524 1.0000 80 chr1:37940206-37940286 1.0000 80 chr12:49525063-49525143 1.0000 80 chr2:88315589-88315669 1.0000 80 chr9:91926063-91926143 1.0000 80 chr14:102553287-10255336 1.0000 80 chr21:36261025-36261105 1.0000 80 chr16:2014742-2014822 1.0000 80 chr17:43226141-43226221 1.0000 80 chr6:111195981-111196061 1.0000 80 chr9:131940433-131940513 1.0000 80 chr11:8704225-8704305 1.0000 80 chr1:182360862-182360942 1.0000 80 chr14:75745546-75745626 1.0000 80 chr5:53606599-53606679 1.0000 80 chr6:16129365-16129445 1.0000 80 chr10:127600264-12760034 1.0000 80 chr17:74733319-74733399 1.0000 80 chr6:74230674-74230754 1.0000 80 chr1:46049723-46049803 1.0000 80 chr4:174255415-174255495 1.0000 80 chr19:13263921-13264001 1.0000 80 chr16:18812760-18812840 1.0000 80 chr19:13049456-13049536 1.0000 80 chr22:43411382-43411462 1.0000 80 chr9:128003521-128003601 1.0000 80 chr11:10830607-10830687 1.0000 80 chr6:2903491-2903571 1.0000 80 chr20:47895173-47895253 1.0000 80 chr12:120730660-12073074 1.0000 80 chr1:32801763-32801843 1.0000 80 chr11:118966029-11896610 1.0000 80 chr13:81290546-81290626 1.0000 80 chr4:3534034-3534114 1.0000 80 chr17:73775785-73775865 1.0000 80 chr6:27860890-27860970 1.0000 80 chr1:45987506-45987586 1.0000 80 chr1:27481510-27481590 1.0000 80 chr6:26199911-26199991 1.0000 80 chr13:90890732-90890812 1.0000 80 chr13:111365681-11136576 1.0000 80 chr1:153963252-153963332 1.0000 80 chr19:12902327-12902407 1.0000 80 chr1:28837174-28837254 1.0000 80 chr1:162531578-162531658 1.0000 80 chr4:77870979-77871059 1.0000 80 chr17:43225942-43226022 1.0000 80 chr6:26033714-26033794 1.0000 80 chr6:26216799-26216879 1.0000 80 chr12:120638813-12063889 1.0000 80 chr6:26032190-26032270 1.0000 80 chr6:27100857-27100937 1.0000 80 chr17:62223344-62223424 1.0000 80 chr20:37555109-37555189 1.0000 80 chr6:139695679-139695759 1.0000 80 chr2:47403542-47403622 1.0000 80 chr6:30584823-30584903 1.0000 80 chr2:38978402-38978482 1.0000 80 chr1:173837031-173837111 1.0000 80 chr17:54991553-54991633 1.0000 80 chr11:62572820-62572900 1.0000 80 chr1:181057906-181057986 1.0000 80 chr3:141595488-141595568 1.0000 80 chr6:26124038-26124118 1.0000 80 chr12:54674569-54674649 1.0000 80 chr12:7053282-7053362 1.0000 80 chr6:3157642-3157722 1.0000 80 chr16:2205253-2205333 1.0000 80 chr14:20937607-20937687 1.0000 80 chr12:49658877-49658957 1.0000 80 chr10:74856505-74856585 1.0000 80 chr10:74033708-74033788 1.0000 80 chr12:51477324-51477404 1.0000 80 chr10:91404075-91404155 1.0000 80 chr10:104195640-10419572 1.0000 80 chr13:52027059-52027139 1.0000 80 chr22:21011514-21011594 1.0000 80 chr6:26156572-26156652 1.0000 80 chr2:10588301-10588381 1.0000 80 chr1:33430252-33430332 1.0000 80 chr1:28908326-28908406 1.0000 80 chr22:43011607-43011687 1.0000 80 chr16:15667957-15668037 1.0000 80 chr10:127576127-12757620 1.0000 80 chr6:36562107-36562187 1.0000 80 chr17:56756635-56756715 1.0000 80 chr17:80055983-80056063 1.0000 80 chr15:69745189-69745269 1.0000 80 chr6:26104236-26104316 1.0000 80 chr12:92028716-92028796 1.0000 80 chr16:29624952-29625032 1.0000 80 chr2:239148564-239148644 1.0000 80 chr3:195808851-195808931 1.0000 80 chr22:21011169-21011249 1.0000 80 chr13:91510068-91510148 1.0000 80 chr1:236445083-236445163 1.0000 80 chr19:47291718-47291798 1.0000 80 chr3:4535003-4535083 1.0000 80 chr3:41241061-41241141 1.0000 80 chr17:56160925-56161005 1.0000 80 chr1:149858159-149858239 1.0000 80 chr17:8076419-8076499 1.0000 80 chr1:11968887-11968967 1.0000 80 chr13:92289940-92290020 1.0000 80 chr2:30884403-30884483 1.0000 80 chr3:39448157-39448237 1.0000 80 chr15:77223772-77223852 1.0000 80 chr1:16893535-16893615 1.0000 80 chr6:26204908-26204988 1.0000 80 chr3:186501382-186501462 1.0000 80 chr15:81282037-81282117 1.0000 80 chr3:23958645-23958725 1.0000 80 chr12:6976715-6976795 1.0000 80 chr16:56966027-56966107 1.0000 80 chr6:44214864-44214944 1.0000 80 chr19:35739946-35740026 1.0000 80 chr13:90673154-90673234 1.0000 80 chr19:18496993-18497073 1.0000 80 chr16:21964632-21964712 1.0000 80 chr1:110091093-110091173 1.0000 80 chr19:47729594-47729674 1.0000 80 chr3:70048896-70048976 1.0000 80 chr4:31999018-31999098 1.0000 80 chr1:241803456-241803536 1.0000 80 chr13:22178163-22178243 1.0000 80 chr15:66874556-66874636 1.0000 80 chr19:55897240-55897320 1.0000 80 chr2:168797541-168797621 1.0000 80 chr19:2476152-2476232 1.0000 80 chr8:59465859-59465939 1.0000 80 chr17:45214287-45214367 1.0000 80 chr13:26796470-26796550 1.0000 80 chr1:17231912-17231992 1.0000 80 chrX:153626720-153626800 1.0000 80 chr2:10262870-10262950 1.0000 80 chr5:175788589-175788669 1.0000 80 chr16:69760310-69760390 1.0000 80 chr17:41444994-41445074 1.0000 80 chr10:98561404-98561484 1.0000 80 chr11:2721157-2721237 1.0000 80 chr9:130213556-130213636 1.0000 80 chr16:10479875-10479955 1.0000 80 chr6:16266120-16266200 1.0000 80 chr5:170814742-170814822 1.0000 80 chr7:64838770-64838850 1.0000 80 chr6:144385416-144385496 1.0000 80 chr22:23254180-23254260 1.0000 80 chr2:121832601-121832681 1.0000 80 chr6:47445876-47445956 1.0000 80 chr20:60641138-60641218 1.0000 80 chr1:45187280-45187360 1.0000 80 chr6:31802678-31802758 1.0000 80 chr7:73097921-73098001 1.0000 80 chrX:48776204-48776284 1.0000 80 chr13:81175215-81175295 1.0000 80 chrX:135962783-135962863 1.0000 80 chr19:8386345-8386425 1.0000 80 chr10:16934095-16934175 1.0000 80 chr10:5488582-5488662 1.0000 80 chr22:39916535-39916615 1.0000 80 chr5:177631557-177631637 1.0000 80 chr22:23310205-23310285 1.0000 80 chr1:146555999-146556079 1.0000 80 chr22:39715580-39715660 1.0000 80 chr5:27217789-27217869 1.0000 80 chr1:205601158-205601238 1.0000 80 chr19:39926526-39926606 1.0000 80 chr15:45003736-45003816 1.0000 80 chr20:42086515-42086595 1.0000 80 chr1:45196507-45196587 1.0000 80 chr22:23327686-23327766 1.0000 80 chr22:23389817-23389897 1.0000 80 chr1:229644226-229644306 1.0000 80 chr22:22513399-22513479 1.0000 80 chr13:90523497-90523577 1.0000 80 chr13:91763787-91763867 1.0000 80 chr11:62432775-62432855 1.0000 80 chr1:47903497-47903577 1.0000 80 chr14:31091549-31091629 1.0000 80 chr19:50433064-50433144 1.0000 80 chr1:118300223-118300303 1.0000 80 chr20:30193047-30193127 1.0000 80 chr19:572623-572703 1.0000 80 chr20:47895372-47895452 1.0000 80 chr4:1795077-1795157 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_NELFE/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/NELFE.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.193 C 0.305 G 0.313 T 0.189 Background letter frequencies (from file dataset with add-one prior applied): A 0.193 C 0.305 G 0.313 T 0.189 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTTTCTTY MEME-1 width = 8 sites = 22 llr = 199 E-value = 8.3e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTCTTY MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2:::1::: pos.-specific C 2:3:9::5 probability G :3:::::: matrix T 677a:aa5 bits 2.4 * ** 2.2 * ** 1.9 * ** 1.7 * ** Relative 1.4 **** Entropy 1.2 ******* (13.1 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTTCTTT consensus CGC C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTCTTY MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:44214864-44214944 56 2.63e-06 CGTATAATCC TTTTCTTT TCAAGGTAAG chr10:127576127-12757620 45 2.63e-06 GGTTACAGTC TTTTCTTT ATTTTACATT chr13:90890732-90890812 35 2.63e-06 CCAAGAAAAG TTTTCTTT GTGGTCAGAA chr22:23327686-23327766 43 6.87e-06 GATGTTTTGG TTTTCTTC CTTTGTAACC chr15:66874556-66874636 51 6.87e-06 ttaagcctcc ttttcttc tcagtctcgg chr10:127600264-12760034 47 9.55e-06 AAAAGCCCTA ATTTCTTT GGATAACTTA chr4:31999018-31999098 22 1.81e-05 gtgggaggtt tgttcttt tgctctttgc chr12:92028716-92028796 25 1.81e-05 gtagaggctt tgttcttt cagtctttgc chr13:90673154-90673234 13 2.67e-05 TTTAATGGGT ATTTCTTC GAACTTGAAA chr14:31091549-31091629 68 3.52e-05 TACTGACTTA TTCTCTTC TCCTT chr1:181057906-181057986 10 3.52e-05 CAGAGTCGT TTCTCTTC GGAGTCTTAG chr6:139695679-139695759 40 3.52e-05 AGCCGTTCCC TTTTATTT CCCCTCCGTT chr17:41444994-41445074 3 4.91e-05 TG CTTTCTTC ACGTTTTAAC chr6:26124038-26124118 19 4.91e-05 TTCTTGCCAT CTTTCTTC TGCGCTTTGG chr6:31802678-31802758 11 5.79e-05 TCGCCATTTT AGTTCTTT TTGCGAAGTG chr6:27861177-27861257 42 6.76e-05 GTTATTTGAG TGCTCTTT CACTCTCCTC chr15:45003736-45003816 47 7.44e-05 TCGCGCTACT CTCTCTTT CTGGCCTGGA chr20:47895173-47895253 2 8.14e-05 T CGTTCTTT CGCGTCTGCG chr1:146555999-146556079 53 1.00e-04 ACGCGTTACT TTCTATTT CATAGCCTCC chr12:6976715-6976795 32 1.00e-04 CCCTCCAGGA AGTTCTTC GTTGGGGGAA chr3:23958645-23958725 41 1.14e-04 TGAGGATCTT TGCTCTTC CATCCGCCTT chr16:15667957-15668037 44 1.28e-04 aagcaaggca ctctcttc acaaggtgac -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTCTTY MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:44214864-44214944 2.6e-06 55_[+1]_17 chr10:127576127-12757620 2.6e-06 44_[+1]_28 chr13:90890732-90890812 2.6e-06 34_[+1]_38 chr22:23327686-23327766 6.9e-06 42_[+1]_30 chr15:66874556-66874636 6.9e-06 50_[+1]_22 chr10:127600264-12760034 9.6e-06 46_[+1]_26 chr4:31999018-31999098 1.8e-05 21_[+1]_51 chr12:92028716-92028796 1.8e-05 24_[+1]_48 chr13:90673154-90673234 2.7e-05 12_[+1]_60 chr14:31091549-31091629 3.5e-05 67_[+1]_5 chr1:181057906-181057986 3.5e-05 9_[+1]_63 chr6:139695679-139695759 3.5e-05 39_[+1]_33 chr17:41444994-41445074 4.9e-05 2_[+1]_70 chr6:26124038-26124118 4.9e-05 18_[+1]_54 chr6:31802678-31802758 5.8e-05 10_[+1]_62 chr6:27861177-27861257 6.8e-05 41_[+1]_31 chr15:45003736-45003816 7.4e-05 46_[+1]_26 chr20:47895173-47895253 8.1e-05 1_[+1]_71 chr1:146555999-146556079 0.0001 52_[+1]_20 chr12:6976715-6976795 0.0001 31_[+1]_41 chr3:23958645-23958725 0.00011 40_[+1]_32 chr16:15667957-15668037 0.00013 43_[+1]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTCTTY MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTCTTY width=8 seqs=22 chr6:44214864-44214944 ( 56) TTTTCTTT 1 chr10:127576127-12757620 ( 45) TTTTCTTT 1 chr13:90890732-90890812 ( 35) TTTTCTTT 1 chr22:23327686-23327766 ( 43) TTTTCTTC 1 chr15:66874556-66874636 ( 51) TTTTCTTC 1 chr10:127600264-12760034 ( 47) ATTTCTTT 1 chr4:31999018-31999098 ( 22) TGTTCTTT 1 chr12:92028716-92028796 ( 25) TGTTCTTT 1 chr13:90673154-90673234 ( 13) ATTTCTTC 1 chr14:31091549-31091629 ( 68) TTCTCTTC 1 chr1:181057906-181057986 ( 10) TTCTCTTC 1 chr6:139695679-139695759 ( 40) TTTTATTT 1 chr17:41444994-41445074 ( 3) CTTTCTTC 1 chr6:26124038-26124118 ( 19) CTTTCTTC 1 chr6:31802678-31802758 ( 11) AGTTCTTT 1 chr6:27861177-27861257 ( 42) TGCTCTTT 1 chr15:45003736-45003816 ( 47) CTCTCTTT 1 chr20:47895173-47895253 ( 2) CGTTCTTT 1 chr1:146555999-146556079 ( 53) TTCTATTT 1 chr12:6976715-6976795 ( 32) AGTTCTTC 1 chr3:23958645-23958725 ( 41) TGCTCTTC 1 chr16:15667957-15668037 ( 44) CTCTCTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTCTTY MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.229 E= 8.3e+000 -9 -42 -1110 164 -1110 -1110 3 185 -1110 6 -1110 185 -1110 -1110 -1110 240 -109 158 -1110 -1110 -1110 -1110 -1110 240 -1110 -1110 -1110 240 -1110 58 -1110 153 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTCTTY MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 8.3e+000 0.181818 0.227273 0.000000 0.590909 0.000000 0.000000 0.318182 0.681818 0.000000 0.318182 0.000000 0.681818 0.000000 0.000000 0.000000 1.000000 0.090909 0.909091 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.454545 0.000000 0.545455 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTCTTY MEME-1 regular expression -------------------------------------------------------------------------------- [TC][TG][TC]TCTT[TC] -------------------------------------------------------------------------------- Time 5.12 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTTWMCT MEME-2 width = 8 sites = 7 llr = 76 E-value = 1.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTWMCT MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::463: pos.-specific C :::::47: probability G :::::::: matrix T aaaa6::a bits 2.4 **** * 2.2 **** * 1.9 **** * 1.7 **** * Relative 1.4 ***** * Entropy 1.2 ****** * (15.6 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTTTACT consensus ACA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTWMCT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr10:127600264-12760034 17 2.68e-06 aaacttagaa tttttact gttctgctag chr17:41444994-41445074 14 5.42e-06 TTTCTTCACG TTTTAACT GTCTGGAGTC chr13:90673154-90673234 1 7.12e-06 . TTTTTAAT GGGTATTTCT chr22:23327686-23327766 7 1.14e-05 AAATCT TTTTTCCT GGTGTTAACT chr12:54674569-54674649 67 1.14e-05 CCACTTGAAT TTTTTCCT CTCCCT chr13:90523497-90523577 4 1.31e-05 tta ttttaaat cactacattt chr12:120730660-12073074 17 1.74e-05 ACCGCCCTGC TTTTACCT TAAAAGTAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTWMCT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:127600264-12760034 2.7e-06 16_[+2]_56 chr17:41444994-41445074 5.4e-06 13_[+2]_59 chr13:90673154-90673234 7.1e-06 [+2]_72 chr22:23327686-23327766 1.1e-05 6_[+2]_66 chr12:54674569-54674649 1.1e-05 66_[+2]_6 chr13:90523497-90523577 1.3e-05 3_[+2]_69 chr12:120730660-12073074 1.7e-05 16_[+2]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTWMCT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTWMCT width=8 seqs=7 chr10:127600264-12760034 ( 17) TTTTTACT 1 chr17:41444994-41445074 ( 14) TTTTAACT 1 chr13:90673154-90673234 ( 1) TTTTTAAT 1 chr22:23327686-23327766 ( 7) TTTTTCCT 1 chr12:54674569-54674649 ( 67) TTTTTCCT 1 chr13:90523497-90523577 ( 4) TTTTAAAT 1 chr12:120730660-12073074 ( 17) TTTTACCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTWMCT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.9536 E= 1.1e+004 -945 -945 -945 240 -945 -945 -945 240 -945 -945 -945 240 -945 -945 -945 240 115 -945 -945 159 156 49 -945 -945 56 123 -945 -945 -945 -945 -945 240 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTWMCT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.1e+004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.428571 0.000000 0.000000 0.571429 0.571429 0.428571 0.000000 0.000000 0.285714 0.714286 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTWMCT MEME-2 regular expression -------------------------------------------------------------------------------- TTTT[TA][AC][CA]T -------------------------------------------------------------------------------- Time 9.02 secs. ******************************************************************************** ******************************************************************************** MOTIF TTATWATT MEME-3 width = 8 sites = 7 llr = 75 E-value = 4.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTATWATT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :3a14a:1 pos.-specific C ::::1::: probability G :::::::: matrix T a7:94:a9 bits 2.4 * * ** 2.2 * * ** 1.9 * ** *** 1.7 * ** *** Relative 1.4 **** *** Entropy 1.2 **** *** (15.5 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTATAATT consensus A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTATWATT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr13:81175215-81175295 69 1.70e-06 cacacccagc ttattatt ttta chr1:146555999-146556079 10 3.43e-06 CGGCTGACC TTATAATT TCTCCGGCGG chr10:127600264-12760034 66 5.17e-06 GATAACTTAC TAATTATT GAGTCTT chr10:16934095-16934175 51 6.94e-06 AGCATTGGTT TAATAATT CTCAGCTCTT chr17:45214287-45214367 31 9.68e-06 TGGTATTCTA TTATCATT AGTTAATTTA chr10:91404075-91404155 4 1.31e-05 CGC TTATTATA TATCCTTGAC chr10:127576127-12757620 11 1.67e-05 CTTTTTTTCC TTAAAATT CTCCTCTTAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTATWATT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr13:81175215-81175295 1.7e-06 68_[+3]_4 chr1:146555999-146556079 3.4e-06 9_[+3]_63 chr10:127600264-12760034 5.2e-06 65_[+3]_7 chr10:16934095-16934175 6.9e-06 50_[+3]_22 chr17:45214287-45214367 9.7e-06 30_[+3]_42 chr10:91404075-91404155 1.3e-05 3_[+3]_69 chr10:127576127-12757620 1.7e-05 10_[+3]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTATWATT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTATWATT width=8 seqs=7 chr13:81175215-81175295 ( 69) TTATTATT 1 chr1:146555999-146556079 ( 10) TTATAATT 1 chr10:127600264-12760034 ( 66) TAATTATT 1 chr10:16934095-16934175 ( 51) TAATAATT 1 chr17:45214287-45214367 ( 31) TTATCATT 1 chr10:91404075-91404155 ( 4) TTATTATA 1 chr10:127576127-12757620 ( 11) TTAAAATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTATWATT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.5704 E= 4.0e+003 -945 -945 -945 240 56 -945 -945 192 237 -945 -945 -945 -44 -945 -945 218 115 -109 -945 118 237 -945 -945 -945 -945 -945 -945 240 -44 -945 -945 218 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTATWATT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.0e+003 0.000000 0.000000 0.000000 1.000000 0.285714 0.000000 0.000000 0.714286 1.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.000000 0.857143 0.428571 0.142857 0.000000 0.428571 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.142857 0.000000 0.000000 0.857143 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTATWATT MEME-3 regular expression -------------------------------------------------------------------------------- T[TA]AT[AT]ATT -------------------------------------------------------------------------------- Time 12.88 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTGCART MEME-4 width = 8 sites = 5 llr = 57 E-value = 1.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTGCART MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::a6: pos.-specific C ::::a::: probability G :::a::4: matrix T aaa::::a bits 2.4 *** * * 2.2 *** * * 1.9 *** * * 1.7 ****** * Relative 1.4 ****** * Entropy 1.2 ******** (16.5 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTGCAAT consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGCART MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:2476152-2476232 37 4.54e-06 CGCCAAGGAC TTTGCAAT ATATTTTTCC chr4:31999018-31999098 35 4.54e-06 tcttttgctc tttgcaat aaagcttgct chr12:92028716-92028796 38 4.54e-06 tctttcagtc tttgcaat aaatctttct chr1:16893535-16893615 68 1.19e-05 GTAAGGGCCA TTTGCAGT AGGAA chr1:59249589-59249669 13 1.19e-05 GAAAATAAGA TTTGCAGT TCGGACTATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGCART MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:2476152-2476232 4.5e-06 36_[+4]_36 chr4:31999018-31999098 4.5e-06 34_[+4]_38 chr12:92028716-92028796 4.5e-06 37_[+4]_35 chr1:16893535-16893615 1.2e-05 67_[+4]_5 chr1:59249589-59249669 1.2e-05 12_[+4]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGCART MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTGCART width=8 seqs=5 chr19:2476152-2476232 ( 37) TTTGCAAT 1 chr4:31999018-31999098 ( 35) TTTGCAAT 1 chr12:92028716-92028796 ( 38) TTTGCAAT 1 chr1:16893535-16893615 ( 68) TTTGCAGT 1 chr1:59249589-59249669 ( 13) TTTGCAGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGCART MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.2675 E= 1.1e+004 -897 -897 -897 240 -897 -897 -897 240 -897 -897 -897 240 -897 -897 168 -897 -897 171 -897 -897 237 -897 -897 -897 163 -897 35 -897 -897 -897 -897 240 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGCART MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.1e+004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.600000 0.000000 0.400000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGCART MEME-4 regular expression -------------------------------------------------------------------------------- TTTGCA[AG]T -------------------------------------------------------------------------------- Time 16.71 secs. ******************************************************************************** ******************************************************************************** MOTIF TTYAATTW MEME-5 width = 8 sites = 2 llr = 23 E-value = 9.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTYAATTW MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::aa::5 pos.-specific C ::5::::: probability G :::::::: matrix T aa5::aa5 bits 2.4 ** **** 2.2 ** **** 1.9 ** **** 1.7 ** **** Relative 1.4 ** ***** Entropy 1.2 ** ***** (16.8 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTCAATTA consensus T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYAATTW MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:168797541-168797621 63 3.43e-06 gcaaaagagg tttaatta gacttacagt chr1:144534768-144534848 29 8.97e-06 aaaaaaagaa TTCAATTT CAACAGTCTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYAATTW MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:168797541-168797621 3.4e-06 62_[+5]_10 chr1:144534768-144534848 9e-06 28_[+5]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYAATTW MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTYAATTW width=8 seqs=2 chr2:168797541-168797621 ( 63) TTTAATTA 1 chr1:144534768-144534848 ( 29) TTCAATTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYAATTW MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 9.5e+004 -765 -765 -765 240 -765 -765 -765 240 -765 71 -765 140 236 -765 -765 -765 236 -765 -765 -765 -765 -765 -765 240 -765 -765 -765 240 137 -765 -765 140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYAATTW MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 9.5e+004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.500000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.500000 0.000000 0.000000 0.500000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYAATTW MEME-5 regular expression -------------------------------------------------------------------------------- TT[CT]AATT[AT] -------------------------------------------------------------------------------- Time 20.53 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr13:111367592-11136767 3.23e-01 80 chr1:17223041-17223121 6.70e-01 80 chr1:45285085-45285165 1.90e-03 80 chrX:136520467-136520547 9.97e-01 80 chr20:48599537-48599617 4.51e-02 80 chr1:118148698-118148778 1.58e-01 80 chr6:31795532-31795612 6.87e-01 80 chrX:12993213-12993293 9.16e-01 80 chr17:79008954-79009034 6.93e-01 80 chr20:43976955-43977035 1.00e+00 80 chr17:48943610-48943690 8.91e-01 80 chr7:5632472-5632552 1.00e+00 80 chr1:46598114-46598194 9.55e-01 80 chr17:7387726-7387806 7.83e-04 80 chr18:57567259-57567339 9.02e-01 80 chr1:144534768-144534848 3.98e-03 28_[+5(8.97e-06)]_44 chr19:2051085-2051165 1.00e+00 80 chr22:41842685-41842765 9.99e-01 80 chr1:28975583-28975663 8.87e-01 80 chr5:137801180-137801260 1.00e+00 80 chr20:57464242-57464322 9.33e-01 80 chr11:62608674-62608754 4.83e-01 80 chr8:128748569-128748649 9.99e-01 80 chr17:73150481-73150561 1.00e+00 80 chr2:33141311-33141391 1.00e+00 80 chr11:64645986-64646066 1.00e+00 80 chr2:30454388-30454468 9.95e-01 80 chr11:122932777-12293285 3.84e-01 80 chr3:49058849-49058929 2.21e-01 80 chr17:39845065-39845145 2.38e-01 80 chrX:41193392-41193472 5.92e-01 80 chr17:56409754-56409834 9.86e-01 80 chr2:191745555-191745635 9.96e-01 80 chr4:127877251-127877331 6.33e-01 80 chr14:90863377-90863457 8.84e-01 80 chr16:2955290-2955370 9.52e-01 80 chr17:27621101-27621181 8.39e-01 80 chr1:86046417-86046497 1.00e+00 80 chr4:87927890-87927970 9.45e-01 80 chr19:6531017-6531097 7.18e-01 80 chr12:6579730-6579810 1.00e+00 80 chr3:129035045-129035125 9.02e-01 80 chr4:100871331-100871411 9.41e-01 80 chr5:137673960-137674040 1.00e+00 80 chr17:5522622-5522702 8.38e-03 14_[+5(2.37e-05)]_58 chr1:59249589-59249669 1.36e-02 12_[+4(1.19e-05)]_60 chr17:62502305-62502385 9.90e-01 80 chr6:86388396-86388476 9.95e-01 80 chr6:31783339-31783419 6.69e-01 80 chr5:172198059-172198139 1.03e-01 80 chr7:119547348-119547428 8.82e-02 80 chr2:8822226-8822306 9.95e-01 80 chr2:113403501-113403581 9.63e-02 80 chr6:27861177-27861257 3.27e-04 41_[+1(6.76e-05)]_31 chr17:56708716-56708796 3.59e-01 80 chr7:112090512-112090592 5.26e-03 80 chr6:32940017-32940097 1.44e-01 80 chr11:5526820-5526900 9.76e-01 80 chr11:10830407-10830487 1.00e+00 80 chr9:139622525-139622605 1.00e+00 80 chr8:61193901-61193981 1.00e+00 80 chr2:85766313-85766393 6.05e-01 80 chr1:149223600-149223680 2.23e-01 80 chr17:56736189-56736269 3.22e-01 80 chr11:68452023-68452103 9.98e-01 80 chr17:75954444-75954524 1.00e+00 80 chr1:37940206-37940286 1.00e+00 80 chr12:49525063-49525143 9.69e-01 80 chr2:88315589-88315669 1.73e-01 80 chr9:91926063-91926143 9.36e-02 80 chr14:102553287-10255336 9.99e-01 80 chr21:36261025-36261105 3.79e-02 80 chr16:2014742-2014822 9.52e-01 80 chr17:43226141-43226221 2.36e-01 80 chr6:111195981-111196061 6.66e-01 80 chr9:131940433-131940513 1.00e+00 80 chr11:8704225-8704305 8.42e-01 80 chr1:182360862-182360942 2.78e-01 80 chr14:75745546-75745626 9.74e-01 80 chr5:53606599-53606679 6.44e-01 80 chr6:16129365-16129445 1.00e+00 80 chr10:127600264-12760034 1.34e-08 16_[+2(2.68e-06)]_22_[+1(9.55e-06)]_\ 11_[+3(5.17e-06)]_7 chr17:74733319-74733399 9.35e-01 80 chr6:74230674-74230754 8.86e-01 80 chr1:46049723-46049803 4.60e-02 80 chr4:174255415-174255495 1.24e-01 80 chr19:13263921-13264001 7.51e-01 80 chr16:18812760-18812840 4.87e-01 80 chr19:13049456-13049536 9.60e-01 80 chr22:43411382-43411462 1.76e-01 80 chr9:128003521-128003601 3.48e-01 80 chr11:10830607-10830687 9.99e-01 80 chr6:2903491-2903571 9.66e-01 80 chr20:47895173-47895253 1.49e-02 1_[+1(8.14e-05)]_71 chr12:120730660-12073074 1.42e-03 16_[+2(1.74e-05)]_56 chr1:32801763-32801843 1.00e+00 80 chr11:118966029-11896610 9.91e-01 80 chr13:81290546-81290626 1.25e-02 80 chr4:3534034-3534114 1.00e+00 80 chr17:73775785-73775865 9.29e-01 80 chr6:27860890-27860970 9.90e-01 80 chr1:45987506-45987586 9.62e-01 80 chr1:27481510-27481590 9.73e-01 80 chr6:26199911-26199991 8.81e-01 80 chr13:90890732-90890812 8.28e-05 34_[+1(2.63e-06)]_38 chr13:111365681-11136576 6.51e-01 80 chr1:153963252-153963332 7.25e-01 80 chr19:12902327-12902407 1.00e+00 80 chr1:28837174-28837254 1.93e-02 80 chr1:162531578-162531658 1.00e+00 80 chr4:77870979-77871059 1.00e+00 80 chr17:43225942-43226022 7.30e-01 80 chr6:26033714-26033794 4.79e-01 80 chr6:26216799-26216879 5.17e-01 80 chr12:120638813-12063889 5.42e-01 80 chr6:26032190-26032270 6.11e-01 80 chr6:27100857-27100937 2.13e-01 80 chr17:62223344-62223424 2.27e-01 80 chr20:37555109-37555189 9.47e-01 80 chr6:139695679-139695759 2.07e-04 39_[+1(3.52e-05)]_33 chr2:47403542-47403622 9.86e-01 80 chr6:30584823-30584903 4.20e-01 80 chr2:38978402-38978482 3.30e-01 80 chr1:173837031-173837111 5.11e-01 80 chr17:54991553-54991633 1.00e+00 80 chr11:62572820-62572900 1.00e+00 80 chr1:181057906-181057986 1.72e-02 9_[+1(3.52e-05)]_63 chr3:141595488-141595568 9.39e-01 80 chr6:26124038-26124118 1.52e-02 18_[+1(4.91e-05)]_54 chr12:54674569-54674649 8.28e-06 66_[+2(1.14e-05)]_6 chr12:7053282-7053362 9.94e-01 80 chr6:3157642-3157722 9.88e-01 80 chr16:2205253-2205333 1.65e-01 80 chr14:20937607-20937687 1.00e+00 80 chr12:49658877-49658957 6.89e-01 80 chr10:74856505-74856585 3.52e-01 80 chr10:74033708-74033788 9.61e-01 80 chr12:51477324-51477404 6.70e-01 80 chr10:91404075-91404155 2.00e-03 3_[+3(1.31e-05)]_69 chr10:104195640-10419572 1.74e-01 80 chr13:52027059-52027139 9.74e-01 80 chr22:21011514-21011594 6.13e-02 80 chr6:26156572-26156652 4.24e-01 80 chr2:10588301-10588381 1.00e+00 80 chr1:33430252-33430332 9.41e-01 80 chr1:28908326-28908406 7.03e-01 80 chr22:43011607-43011687 1.54e-01 80 chr16:15667957-15668037 1.06e-02 80 chr10:127576127-12757620 4.76e-10 3_[+2(1.14e-05)]_13_[+5(2.37e-05)]_\ 12_[+1(2.63e-06)]_1_[+2(2.28e-05)]_19 chr6:36562107-36562187 1.35e-01 80 chr17:56756635-56756715 1.58e-02 80 chr17:80055983-80056063 9.82e-01 80 chr15:69745189-69745269 8.73e-01 80 chr6:26104236-26104316 4.81e-01 80 chr12:92028716-92028796 3.84e-06 24_[+1(1.81e-05)]_5_[+4(4.54e-06)]_\ 16_[+1(6.76e-05)]_11 chr16:29624952-29625032 9.03e-01 80 chr2:239148564-239148644 1.00e+00 80 chr3:195808851-195808931 8.66e-01 80 chr22:21011169-21011249 3.53e-01 80 chr13:91510068-91510148 9.53e-05 80 chr1:236445083-236445163 1.00e+00 80 chr19:47291718-47291798 9.74e-01 80 chr3:4535003-4535083 4.64e-02 80 chr3:41241061-41241141 9.96e-01 80 chr17:56160925-56161005 8.50e-01 80 chr1:149858159-149858239 7.19e-01 80 chr17:8076419-8076499 1.14e-02 80 chr1:11968887-11968967 5.73e-01 80 chr13:92289940-92290020 7.31e-01 80 chr2:30884403-30884483 4.99e-01 80 chr3:39448157-39448237 4.69e-03 80 chr15:77223772-77223852 1.08e-01 80 chr1:16893535-16893615 1.84e-02 67_[+4(1.19e-05)]_5 chr6:26204908-26204988 9.82e-01 80 chr3:186501382-186501462 2.31e-02 80 chr15:81282037-81282117 9.81e-01 80 chr3:23958645-23958725 1.02e-02 80 chr12:6976715-6976795 1.39e-01 31_[+1(1.00e-04)]_41 chr16:56966027-56966107 8.98e-01 80 chr6:44214864-44214944 5.28e-05 55_[+1(2.63e-06)]_17 chr19:35739946-35740026 7.32e-01 80 chr13:90673154-90673234 2.31e-06 [+2(7.12e-06)]_4_[+1(2.67e-05)]_60 chr19:18496993-18497073 9.87e-01 80 chr16:21964632-21964712 3.59e-02 80 chr1:110091093-110091173 6.32e-01 80 chr19:47729594-47729674 9.78e-01 80 chr3:70048896-70048976 7.43e-01 80 chr4:31999018-31999098 1.00e-05 21_[+1(1.81e-05)]_5_[+4(4.54e-06)]_\ 38 chr1:241803456-241803536 1.00e+00 80 chr13:22178163-22178243 7.98e-01 80 chr15:66874556-66874636 1.32e-04 50_[+1(6.87e-06)]_22 chr19:55897240-55897320 2.81e-01 80 chr2:168797541-168797621 3.58e-05 62_[+5(3.43e-06)]_10 chr19:2476152-2476232 1.04e-04 36_[+4(4.54e-06)]_36 chr8:59465859-59465939 1.00e+00 80 chr17:45214287-45214367 2.31e-04 30_[+3(9.68e-06)]_42 chr13:26796470-26796550 8.37e-01 80 chr1:17231912-17231992 6.08e-02 80 chrX:153626720-153626800 7.44e-02 80 chr2:10262870-10262950 8.20e-01 80 chr5:175788589-175788669 4.61e-01 80 chr16:69760310-69760390 3.83e-01 80 chr17:41444994-41445074 1.47e-06 2_[+1(4.91e-05)]_3_[+2(5.42e-06)]_\ 59 chr10:98561404-98561484 1.00e+00 80 chr11:2721157-2721237 7.20e-01 80 chr9:130213556-130213636 1.06e-01 80 chr16:10479875-10479955 5.46e-01 80 chr6:16266120-16266200 7.81e-02 80 chr5:170814742-170814822 8.78e-01 80 chr7:64838770-64838850 2.22e-01 80 chr6:144385416-144385496 1.00e+00 80 chr22:23254180-23254260 5.42e-01 80 chr2:121832601-121832681 1.91e-02 80 chr6:47445876-47445956 1.00e+00 80 chr20:60641138-60641218 1.00e+00 80 chr1:45187280-45187360 5.72e-01 80 chr6:31802678-31802758 1.40e-04 10_[+1(5.79e-05)]_62 chr7:73097921-73098001 9.96e-01 80 chrX:48776204-48776284 7.62e-01 80 chr13:81175215-81175295 1.42e-04 68_[+3(1.70e-06)]_4 chrX:135962783-135962863 1.00e+00 80 chr19:8386345-8386425 9.94e-01 80 chr10:16934095-16934175 8.20e-06 50_[+3(6.94e-06)]_22 chr10:5488582-5488662 9.99e-01 80 chr22:39916535-39916615 2.32e-03 80 chr5:177631557-177631637 9.48e-01 80 chr22:23310205-23310285 1.10e-02 39_[+5(8.97e-06)]_33 chr1:146555999-146556079 2.04e-06 9_[+3(3.43e-06)]_35_[+1(1.00e-04)]_\ 20 chr22:39715580-39715660 6.81e-01 80 chr5:27217789-27217869 9.77e-01 80 chr1:205601158-205601238 9.26e-01 80 chr19:39926526-39926606 1.00e+00 80 chr15:45003736-45003816 1.40e-01 46_[+1(7.44e-05)]_26 chr20:42086515-42086595 9.32e-01 80 chr1:45196507-45196587 7.85e-01 80 chr22:23327686-23327766 1.31e-05 6_[+2(1.14e-05)]_28_[+1(6.87e-06)]_\ 30 chr22:23389817-23389897 8.86e-01 80 chr1:229644226-229644306 3.81e-01 80 chr22:22513399-22513479 8.37e-01 80 chr13:90523497-90523577 1.15e-05 3_[+2(1.31e-05)]_69 chr13:91763787-91763867 1.99e-02 80 chr11:62432775-62432855 2.82e-02 39_[+2(5.47e-05)]_33 chr1:47903497-47903577 9.09e-01 80 chr14:31091549-31091629 2.49e-02 67_[+1(3.52e-05)]_5 chr19:50433064-50433144 8.20e-01 80 chr1:118300223-118300303 5.60e-01 80 chr20:30193047-30193127 5.73e-04 80 chr19:572623-572703 6.42e-01 80 chr20:47895372-47895452 8.67e-01 80 chr4:1795077-1795157 1.00e+00 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n05.farnam.hpc.yale.internal ********************************************************************************