******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/NCOR1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr19:47734654-47734734 1.0000 80 chr7:150694270-150694350 1.0000 80 chr11:85780957-85781037 1.0000 80 chr16:70471107-70471187 1.0000 80 chr9:19161755-19161835 1.0000 80 chr4:174255751-174255831 1.0000 80 chr6:26053115-26053195 1.0000 80 chr7:129882122-129882202 1.0000 80 chr16:23690109-23690189 1.0000 80 chr9:127421481-127421561 1.0000 80 chr12:2113777-2113857 1.0000 80 chr17:28054026-28054106 1.0000 80 chr4:145000044-145000124 1.0000 80 chr16:20756323-20756403 1.0000 80 chr1:25611732-25611812 1.0000 80 chr14:88491083-88491163 1.0000 80 chr11:68081499-68081579 1.0000 80 chr6:26206358-26206438 1.0000 80 chr20:61196070-61196150 1.0000 80 chr4:144896824-144896904 1.0000 80 chr8:128813034-128813114 1.0000 80 chr1:30664116-30664196 1.0000 80 chr17:38574265-38574345 1.0000 80 chr21:22572590-22572670 1.0000 80 chr11:876059-876139 1.0000 80 chr17:45955134-45955214 1.0000 80 chr10:7294216-7294296 1.0000 80 chr9:119449469-119449549 1.0000 80 chr1:167832665-167832745 1.0000 80 chr19:34818929-34819009 1.0000 80 chr17:74261104-74261184 1.0000 80 chr3:124597942-124598022 1.0000 80 chr17:58042346-58042426 1.0000 80 chr20:54967287-54967367 1.0000 80 chr11:67423952-67424032 1.0000 80 chr21:47875816-47875896 1.0000 80 chr12:7126154-7126234 1.0000 80 chr12:131834846-13183492 1.0000 80 chr16:20693249-20693329 1.0000 80 chr3:39430275-39430355 1.0000 80 chr21:35348530-35348610 1.0000 80 chr6:139811760-139811840 1.0000 80 chr4:144940573-144940653 1.0000 80 chr8:67967436-67967516 1.0000 80 chr5:158635122-158635202 1.0000 80 chr7:120681992-120682072 1.0000 80 chr7:7082267-7082347 1.0000 80 chr1:61918921-61919001 1.0000 80 chrX:47572287-47572367 1.0000 80 chr4:68418030-68418110 1.0000 80 chr21:38909433-38909513 1.0000 80 chr7:12443294-12443374 1.0000 80 chr16:20685580-20685660 1.0000 80 chr1:52541460-52541540 1.0000 80 chr4:144826748-144826828 1.0000 80 chr3:150318722-150318802 1.0000 80 chr11:85780248-85780328 1.0000 80 chr16:86962954-86963034 1.0000 80 chr7:43617244-43617324 1.0000 80 chr3:14162529-14162609 1.0000 80 chr16:9171932-9172012 1.0000 80 chr1:32487459-32487539 1.0000 80 chr8:22743897-22743977 1.0000 80 chr8:25316523-25316603 1.0000 80 chrX:79767972-79768052 1.0000 80 chr9:124813843-124813923 1.0000 80 chr19:51727589-51727669 1.0000 80 chr1:65743499-65743579 1.0000 80 chr6:111805286-111805366 1.0000 80 chr20:30505910-30505990 1.0000 80 chr15:45027856-45027936 1.0000 80 chr10:5514444-5514524 1.0000 80 chr1:151032026-151032106 1.0000 80 chr20:53710994-53711074 1.0000 80 chr6:27791716-27791796 1.0000 80 chr4:48731350-48731430 1.0000 80 chr6:134339210-134339290 1.0000 80 chr2:176800476-176800556 1.0000 80 chr6:7975458-7975538 1.0000 80 chr17:31221461-31221541 1.0000 80 chr17:62919234-62919314 1.0000 80 chr16:53133614-53133694 1.0000 80 chr12:53773585-53773665 1.0000 80 chr12:109249758-10924983 1.0000 80 chr8:142031984-142032064 1.0000 80 chr4:170548112-170548192 1.0000 80 chr3:33014397-33014477 1.0000 80 chr16:68018914-68018994 1.0000 80 chr18:11947324-11947404 1.0000 80 chr18:9885629-9885709 1.0000 80 chrX:77166004-77166084 1.0000 80 chr9:94909653-94909733 1.0000 80 chr21:16046092-16046172 1.0000 80 chr20:33780338-33780418 1.0000 80 chr13:95923425-95923505 1.0000 80 chr2:208825014-208825094 1.0000 80 chr19:944266-944346 1.0000 80 chr7:150015198-150015278 1.0000 80 chr4:144775956-144776036 1.0000 80 chr16:68113834-68113914 1.0000 80 chr19:7894861-7894941 1.0000 80 chr11:5617962-5618042 1.0000 80 chr1:116915593-116915673 1.0000 80 chr7:2811013-2811093 1.0000 80 chr17:40903127-40903207 1.0000 80 chr15:63449483-63449563 1.0000 80 chr19:52193800-52193880 1.0000 80 chr6:50927063-50927143 1.0000 80 chr12:27170418-27170498 1.0000 80 chr2:113522209-113522289 1.0000 80 chr3:160117376-160117456 1.0000 80 chr7:129772277-129772357 1.0000 80 chr21:25294643-25294723 1.0000 80 chr16:70470067-70470147 1.0000 80 chr1:207809076-207809156 1.0000 80 chr3:172468467-172468547 1.0000 80 chr4:145061855-145061935 1.0000 80 chr6:153304194-153304274 1.0000 80 chrX:40032090-40032170 1.0000 80 chr3:5123776-5123856 1.0000 80 chrX:47542990-47543070 1.0000 80 chr19:35411452-35411532 1.0000 80 chr1:195868183-195868263 1.0000 80 chr10:3707760-3707840 1.0000 80 chr18:3526714-3526794 1.0000 80 chr22:29591788-29591868 1.0000 80 chr15:74682272-74682352 1.0000 80 chr19:10828469-10828549 1.0000 80 chr11:126216134-12621621 1.0000 80 chr21:46013935-46014015 1.0000 80 chr21:38798178-38798258 1.0000 80 chr6:27799381-27799461 1.0000 80 chr16:85595000-85595080 1.0000 80 chr3:150169163-150169243 1.0000 80 chr10:43142677-43142757 1.0000 80 chr1:211395915-211395995 1.0000 80 chr19:29037215-29037295 1.0000 80 chr3:160167699-160167779 1.0000 80 chr2:219262608-219262688 1.0000 80 chr5:60116665-60116745 1.0000 80 chr19:41370674-41370754 1.0000 80 chr10:98379057-98379137 1.0000 80 chr17:45973410-45973490 1.0000 80 chr5:95059392-95059472 1.0000 80 chr9:35728588-35728668 1.0000 80 chr20:4654468-4654548 1.0000 80 chrX:65218058-65218138 1.0000 80 chr2:86416681-86416761 1.0000 80 chr1:160919218-160919298 1.0000 80 chr19:18484764-18484844 1.0000 80 chr11:12834576-12834656 1.0000 80 chr6:43027610-43027690 1.0000 80 chr9:136159270-136159350 1.0000 80 chr11:65186427-65186507 1.0000 80 chr11:33958947-33959027 1.0000 80 chr14:24725630-24725710 1.0000 80 chr19:53664576-53664656 1.0000 80 chr11:85885792-85885872 1.0000 80 chr1:228555773-228555853 1.0000 80 chr1:45732076-45732156 1.0000 80 chr5:131758484-131758564 1.0000 80 chr1:28851696-28851776 1.0000 80 chr10:11936844-11936924 1.0000 80 chr15:64754166-64754246 1.0000 80 chr2:7020729-7020809 1.0000 80 chr6:26172210-26172290 1.0000 80 chr1:46971608-46971688 1.0000 80 chr2:173465540-173465620 1.0000 80 chr6:108899925-108900005 1.0000 80 chrX:47535574-47535654 1.0000 80 chr7:120689671-120689751 1.0000 80 chr5:131649931-131650011 1.0000 80 chr11:62136558-62136638 1.0000 80 chr5:139990815-139990895 1.0000 80 chrX:40014489-40014569 1.0000 80 chr17:76311987-76312067 1.0000 80 chr8:130594523-130594603 1.0000 80 chr2:112812863-112812943 1.0000 80 chr12:54688120-54688200 1.0000 80 chr3:6582851-6582931 1.0000 80 chr18:46307760-46307840 1.0000 80 chr1:246273970-246274050 1.0000 80 chr7:5123150-5123230 1.0000 80 chr7:150736584-150736664 1.0000 80 chr3:193571566-193571646 1.0000 80 chr15:65529470-65529550 1.0000 80 chr1:51983766-51983846 1.0000 80 chr16:25565258-25565338 1.0000 80 chr12:4262846-4262926 1.0000 80 chrX:135967131-135967211 1.0000 80 chr8:580816-580896 1.0000 80 chr10:86284964-86285044 1.0000 80 chr17:26368566-26368646 1.0000 80 chr8:91658646-91658726 1.0000 80 chr8:98790809-98790889 1.0000 80 chr6:27741817-27741897 1.0000 80 chr16:19499323-19499403 1.0000 80 chr16:16116717-16116797 1.0000 80 chr4:1884776-1884856 1.0000 80 chr9:101130789-101130869 1.0000 80 chr11:85358968-85359048 1.0000 80 chr11:65244998-65245078 1.0000 80 chr22:29699743-29699823 1.0000 80 chr16:50875126-50875206 1.0000 80 chrX:15534172-15534252 1.0000 80 chr9:140163199-140163279 1.0000 80 chrX:49100815-49100895 1.0000 80 chr17:57906767-57906847 1.0000 80 chr17:21754967-21755047 1.0000 80 chr1:16161034-16161114 1.0000 80 chr1:16472841-16472921 1.0000 80 chr5:74863644-74863724 1.0000 80 chr15:34949901-34949981 1.0000 80 chr9:4862964-4863044 1.0000 80 chr10:75004851-75004931 1.0000 80 chr3:5028603-5028683 1.0000 80 chr7:23510290-23510370 1.0000 80 chr19:18402723-18402803 1.0000 80 chrX:2035523-2035603 1.0000 80 chr7:72176093-72176173 1.0000 80 chr12:56367647-56367727 1.0000 80 chrX:134655937-134656017 1.0000 80 chr11:59383439-59383519 1.0000 80 chr1:53140612-53140692 1.0000 80 chr12:93985344-93985424 1.0000 80 chr22:36764693-36764773 1.0000 80 chr2:169990955-169991035 1.0000 80 chr7:157195938-157196018 1.0000 80 chr2:38742952-38743032 1.0000 80 chr10:65028985-65029065 1.0000 80 chr13:41635568-41635648 1.0000 80 chrX:49047618-49047698 1.0000 80 chr7:16780023-16780103 1.0000 80 chr3:6532284-6532364 1.0000 80 chr11:75245647-75245727 1.0000 80 chr6:136555841-136555921 1.0000 80 chr13:41706772-41706852 1.0000 80 chr10:43140695-43140775 1.0000 80 chr2:87842262-87842342 1.0000 80 chr11:68606839-68606919 1.0000 80 chr10:80779979-80780059 1.0000 80 chr8:1708400-1708480 1.0000 80 chr11:65264958-65265038 1.0000 80 chr10:65389899-65389979 1.0000 80 chr12:108879358-10887943 1.0000 80 chr20:9129870-9129950 1.0000 80 chr12:9917556-9917636 1.0000 80 chr6:119646088-119646168 1.0000 80 chr7:43026505-43026585 1.0000 80 chr17:61498022-61498102 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_NCOR1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/NCOR1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.232 C 0.264 G 0.267 T 0.237 Background letter frequencies (from file dataset with add-one prior applied): A 0.232 C 0.264 G 0.267 T 0.237 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TCTTATCT MEME-1 width = 8 sites = 60 llr = 459 E-value = 1.5e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTTATCT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1:::8::2 pos.-specific C 363:::a: probability G 13::2::: matrix T 627a:a:8 bits 2.1 * * 1.9 * ** 1.7 * ** 1.5 * ** Relative 1.3 ***** Entropy 1.1 ****** (11.0 bits) 0.8 ****** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTTATCT consensus CGC G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTATCT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr10:75004851-75004931 58 1.21e-05 GGGTGCAGCC TCTTATCT AGGCAAAACA chr7:120689671-120689751 32 1.21e-05 AATACCCTTT TCTTATCT GTTTCTAACT chr1:211395915-211395995 47 1.21e-05 gatgccttcc tcttatct caactgcaaa chr4:170548112-170548192 50 1.21e-05 ctcttaccct tcttatct ggctttcaca chr20:30505910-30505990 59 1.21e-05 gcccgagctg tcttatct gtgttttact chr8:22743897-22743977 48 1.21e-05 gtctagactt tcttatct ttaaaatgca chr6:26206358-26206438 35 1.21e-05 TCTCCAGTTT TCTTATCT AAAACAGGCT chr22:36764693-36764773 31 3.78e-05 GGTGGAGGAG TGTTATCT CCCCACCCTT chr6:27741817-27741897 32 3.78e-05 acactggtta tgttatct atagtttcca chr15:65529470-65529550 4 3.78e-05 ACC TCCTATCT GCAGTTCCTC chr2:112812863-112812943 49 3.78e-05 ACATCCTGGC TCCTATCT CTGCCTTCCA chr4:145061855-145061935 23 3.78e-05 GCCTGCTAGC TGTTATCT TCCAGGCCCA chr6:7975458-7975538 71 3.78e-05 TGTGGCTGGC TGTTATCT CT chr1:65743499-65743579 7 3.78e-05 ataatt tgttatct ctcgaggcag chr4:144826748-144826828 2 3.78e-05 C TGTTATCT TCCAGGCCCA chr6:119646088-119646168 46 5.13e-05 atgtgacaac ccttatct ccagacactg chr16:85595000-85595080 31 5.13e-05 CCTCCGAGCC CCTTATCT GGTTCCTGTC chr7:43617244-43617324 33 5.13e-05 gtgcaggttc ccttatct gcacaaaaca chr11:126216134-12621621 49 6.21e-05 AGCCTTGAGT TTTTATCT CGGCAGGAAG chr1:46971608-46971688 68 7.39e-05 acaacagtaT TCTTATCA GTATT chr1:195868183-195868263 46 7.39e-05 aaataaacat tcttatca ccagacacag chr9:19161755-19161835 17 7.39e-05 CATTTATCTG TCTTATCA TAAGACCAGT chr2:7020729-7020809 31 8.79e-05 gctcaagctg tcttgtct gtgttttact chr12:109249758-10924983 12 8.79e-05 AACATTATTC TCTTGTCT CTCTCAGACA chr21:35348530-35348610 63 8.79e-05 GGAAAGCCAG TCTTGTCT TTGTAGATTA chr16:86962954-86963034 24 1.01e-04 CTCACCCCCT TGCTATCT CGGCGGTCCC chr19:944266-944346 1 1.30e-04 . CGTTATCT CCCAGGCGTG chr20:33780338-33780418 27 1.30e-04 cttttagctt ccctatct tagtgcacct chrX:79767972-79768052 24 1.30e-04 cttttagctt ccctatct tagtgtgcct chr3:14162529-14162609 50 1.30e-04 cttttagctt ccctatct tagtacacct chr4:68418030-68418110 52 1.30e-04 cttttagctt ccctatct tagtgcacct chr17:26368566-26368646 5 1.56e-04 GTCT TTCTATCT GCCCATCCCG chr2:173465540-173465620 42 1.56e-04 tcttcgtcca gcttatct ggaagggaga chr19:53664576-53664656 26 1.56e-04 caagcaagtt gcttatct gggctctcaa chr16:25565258-25565338 52 1.93e-04 gtgcaagttt ctttatct gtgtctgcag chr12:53773585-53773665 46 1.93e-04 GTTCTGTCAT TCCTATCA AAGCTTTGCC chr20:53710994-53711074 28 1.93e-04 tagctccact tgttatca cagccatgta chr17:28054026-28054106 13 1.93e-04 TATGTCATTT TGTTATCA CACATGTCTA chr7:129772277-129772357 20 2.06e-04 GATTTCTAGG CCTTATCA TACCATCCCC chr7:2811013-2811093 57 2.06e-04 cccactgtgg ccttatca gcccttcccc chr1:53140612-53140692 8 2.48e-04 GCTTCCT TCCTGTCT GTTGGTGACT chr1:16472841-16472921 51 2.48e-04 CCAACCGTCC ACTTATCT CTGCGGGGCC chrX:15534172-15534252 46 2.48e-04 CTTGTTTTCT TCCTGTCT GCTCCTCAGA chr3:124597942-124598022 48 2.48e-04 agccaaccct tcctgtct gcaacctcta chr17:45955134-45955214 68 2.48e-04 ACAGGCCCTC TCCTGTCT CAGAG chr11:12834576-12834656 20 2.74e-04 CCTAGTGAAC TTTTATCA GTGAGCAGAC chr10:5514444-5514524 27 2.74e-04 ccgataatcc ttttatca cctcccctcc chr1:52541460-52541540 70 2.74e-04 agagacgggg ttttatca tgt chr11:68081499-68081579 26 2.74e-04 CATTGTGGGG CCTTGTCT GGAGCTAGCA chr12:93985344-93985424 38 2.86e-04 CAGAAGTTCT TTTTGTCT GTGGCCAGGG chr5:131649931-131650011 1 3.44e-04 . GCCTATCT GGCCTCACCC chr1:32487459-32487539 28 3.44e-04 tctgacctca ggttatct gcctgcctca chr12:54688120-54688200 1 4.52e-04 . AGTTATCT AGGGTCAAAG chr16:68018914-68018994 64 4.52e-04 CCTTGTTGGT TGCTGTCT GCTCCTCCT chr16:20756323-20756403 13 4.52e-04 TCTAGACGTT AGTTATCT AAATCACACA chr4:48731350-48731430 22 5.10e-04 acttaaatgt ccctgtct gacagctctg chr14:24725630-24725710 47 5.22e-04 ACGCCCCATC CTTTATCA TAACCAACCC chr5:60116665-60116745 29 5.22e-04 ACTTCCTGAG CTTTATCA TCTCTTGGCC chr22:29591788-29591868 65 5.62e-04 ctgtctgtct ttctgtct ttccctcc chr17:31221461-31221541 35 6.61e-04 GAAGTTCATG GGCTATCT ACAATTTCTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTATCT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:75004851-75004931 1.2e-05 57_[+1]_15 chr7:120689671-120689751 1.2e-05 31_[+1]_41 chr1:211395915-211395995 1.2e-05 46_[+1]_26 chr4:170548112-170548192 1.2e-05 49_[+1]_23 chr20:30505910-30505990 1.2e-05 58_[+1]_14 chr8:22743897-22743977 1.2e-05 47_[+1]_25 chr6:26206358-26206438 1.2e-05 34_[+1]_38 chr22:36764693-36764773 3.8e-05 30_[+1]_42 chr6:27741817-27741897 3.8e-05 31_[+1]_41 chr15:65529470-65529550 3.8e-05 3_[+1]_69 chr2:112812863-112812943 3.8e-05 48_[+1]_24 chr4:145061855-145061935 3.8e-05 22_[+1]_50 chr6:7975458-7975538 3.8e-05 70_[+1]_2 chr1:65743499-65743579 3.8e-05 6_[+1]_66 chr4:144826748-144826828 3.8e-05 1_[+1]_71 chr6:119646088-119646168 5.1e-05 45_[+1]_27 chr16:85595000-85595080 5.1e-05 30_[+1]_42 chr7:43617244-43617324 5.1e-05 32_[+1]_40 chr11:126216134-12621621 6.2e-05 48_[+1]_24 chr1:46971608-46971688 7.4e-05 67_[+1]_5 chr1:195868183-195868263 7.4e-05 45_[+1]_27 chr9:19161755-19161835 7.4e-05 16_[+1]_56 chr2:7020729-7020809 8.8e-05 30_[+1]_42 chr12:109249758-10924983 8.8e-05 11_[+1]_61 chr21:35348530-35348610 8.8e-05 62_[+1]_10 chr16:86962954-86963034 0.0001 23_[+1]_49 chr19:944266-944346 0.00013 [+1]_72 chr20:33780338-33780418 0.00013 26_[+1]_46 chrX:79767972-79768052 0.00013 23_[+1]_49 chr3:14162529-14162609 0.00013 49_[+1]_23 chr4:68418030-68418110 0.00013 51_[+1]_21 chr17:26368566-26368646 0.00016 4_[+1]_68 chr2:173465540-173465620 0.00016 41_[+1]_31 chr19:53664576-53664656 0.00016 25_[+1]_47 chr16:25565258-25565338 0.00019 51_[+1]_21 chr12:53773585-53773665 0.00019 45_[+1]_27 chr20:53710994-53711074 0.00019 27_[+1]_45 chr17:28054026-28054106 0.00019 12_[+1]_60 chr7:129772277-129772357 0.00021 19_[+1]_53 chr7:2811013-2811093 0.00021 56_[+1]_16 chr1:53140612-53140692 0.00025 7_[+1]_65 chr1:16472841-16472921 0.00025 50_[+1]_22 chrX:15534172-15534252 0.00025 45_[+1]_27 chr3:124597942-124598022 0.00025 47_[+1]_25 chr17:45955134-45955214 0.00025 67_[+1]_5 chr11:12834576-12834656 0.00027 19_[+1]_53 chr10:5514444-5514524 0.00027 26_[+1]_46 chr1:52541460-52541540 0.00027 69_[+1]_3 chr11:68081499-68081579 0.00027 25_[+1]_47 chr12:93985344-93985424 0.00029 37_[+1]_35 chr5:131649931-131650011 0.00034 [+1]_72 chr1:32487459-32487539 0.00034 27_[+1]_45 chr12:54688120-54688200 0.00045 [+1]_72 chr16:68018914-68018994 0.00045 63_[+1]_9 chr16:20756323-20756403 0.00045 12_[+1]_60 chr4:48731350-48731430 0.00051 21_[+1]_51 chr14:24725630-24725710 0.00052 46_[+1]_26 chr5:60116665-60116745 0.00052 28_[+1]_44 chr22:29591788-29591868 0.00056 64_[+1]_8 chr17:31221461-31221541 0.00066 34_[+1]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTATCT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTTATCT width=8 seqs=60 chr10:75004851-75004931 ( 58) TCTTATCT 1 chr7:120689671-120689751 ( 32) TCTTATCT 1 chr1:211395915-211395995 ( 47) TCTTATCT 1 chr4:170548112-170548192 ( 50) TCTTATCT 1 chr20:30505910-30505990 ( 59) TCTTATCT 1 chr8:22743897-22743977 ( 48) TCTTATCT 1 chr6:26206358-26206438 ( 35) TCTTATCT 1 chr22:36764693-36764773 ( 31) TGTTATCT 1 chr6:27741817-27741897 ( 32) TGTTATCT 1 chr15:65529470-65529550 ( 4) TCCTATCT 1 chr2:112812863-112812943 ( 49) TCCTATCT 1 chr4:145061855-145061935 ( 23) TGTTATCT 1 chr6:7975458-7975538 ( 71) TGTTATCT 1 chr1:65743499-65743579 ( 7) TGTTATCT 1 chr4:144826748-144826828 ( 2) TGTTATCT 1 chr6:119646088-119646168 ( 46) CCTTATCT 1 chr16:85595000-85595080 ( 31) CCTTATCT 1 chr7:43617244-43617324 ( 33) CCTTATCT 1 chr11:126216134-12621621 ( 49) TTTTATCT 1 chr1:46971608-46971688 ( 68) TCTTATCA 1 chr1:195868183-195868263 ( 46) TCTTATCA 1 chr9:19161755-19161835 ( 17) TCTTATCA 1 chr2:7020729-7020809 ( 31) TCTTGTCT 1 chr12:109249758-10924983 ( 12) TCTTGTCT 1 chr21:35348530-35348610 ( 63) TCTTGTCT 1 chr16:86962954-86963034 ( 24) TGCTATCT 1 chr19:944266-944346 ( 1) CGTTATCT 1 chr20:33780338-33780418 ( 27) CCCTATCT 1 chrX:79767972-79768052 ( 24) CCCTATCT 1 chr3:14162529-14162609 ( 50) CCCTATCT 1 chr4:68418030-68418110 ( 52) CCCTATCT 1 chr17:26368566-26368646 ( 5) TTCTATCT 1 chr2:173465540-173465620 ( 42) GCTTATCT 1 chr19:53664576-53664656 ( 26) GCTTATCT 1 chr16:25565258-25565338 ( 52) CTTTATCT 1 chr12:53773585-53773665 ( 46) TCCTATCA 1 chr20:53710994-53711074 ( 28) TGTTATCA 1 chr17:28054026-28054106 ( 13) TGTTATCA 1 chr7:129772277-129772357 ( 20) CCTTATCA 1 chr7:2811013-2811093 ( 57) CCTTATCA 1 chr1:53140612-53140692 ( 8) TCCTGTCT 1 chr1:16472841-16472921 ( 51) ACTTATCT 1 chrX:15534172-15534252 ( 46) TCCTGTCT 1 chr3:124597942-124598022 ( 48) TCCTGTCT 1 chr17:45955134-45955214 ( 68) TCCTGTCT 1 chr11:12834576-12834656 ( 20) TTTTATCA 1 chr10:5514444-5514524 ( 27) TTTTATCA 1 chr1:52541460-52541540 ( 70) TTTTATCA 1 chr11:68081499-68081579 ( 26) CCTTGTCT 1 chr12:93985344-93985424 ( 38) TTTTGTCT 1 chr5:131649931-131650011 ( 1) GCCTATCT 1 chr1:32487459-32487539 ( 28) GGTTATCT 1 chr12:54688120-54688200 ( 1) AGTTATCT 1 chr16:68018914-68018994 ( 64) TGCTGTCT 1 chr16:20756323-20756403 ( 13) AGTTATCT 1 chr4:48731350-48731430 ( 22) CCCTGTCT 1 chr14:24725630-24725710 ( 47) CTTTATCA 1 chr5:60116665-60116745 ( 29) CTTTATCA 1 chr22:29591788-29591868 ( 65) TTCTGTCT 1 chr17:31221461-31221541 ( 35) GGCTATCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTATCT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.91997 E= 1.5e-010 -221 -8 -168 138 -1255 114 -9 -51 -1255 18 -1255 156 -1255 -1255 -1255 208 179 -1255 -41 -1255 -1255 -1255 -1255 208 -1255 192 -1255 -1255 -10 -1255 -1255 172 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTATCT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 60 E= 1.5e-010 0.050000 0.250000 0.083333 0.616667 0.000000 0.583333 0.250000 0.166667 0.000000 0.300000 0.000000 0.700000 0.000000 0.000000 0.000000 1.000000 0.800000 0.000000 0.200000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.216667 0.000000 0.000000 0.783333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTATCT MEME-1 regular expression -------------------------------------------------------------------------------- [TC][CG][TC]T[AG]TC[TA] -------------------------------------------------------------------------------- Time 5.06 secs. ******************************************************************************** ******************************************************************************** MOTIF AGATAAMM MEME-2 width = 8 sites = 39 llr = 328 E-value = 8.9e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGATAAMM MEME-2 Description -------------------------------------------------------------------------------- Simplified A a:a2aa55 pos.-specific C :::2::33 probability G :a::::22 matrix T :::6:::: bits 2.1 * * ** 1.9 *** ** 1.7 *** ** 1.5 *** ** Relative 1.3 *** ** Entropy 1.1 *** ** (12.1 bits) 0.8 ****** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGATAAAA consensus CC sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATAAMM MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:75245647-75245727 25 9.87e-06 tggtggctgg agataaaa cttagaggct chr11:5617962-5618042 41 9.87e-06 GGTTGAGTTT AGATAAAA GCCGAGTGAG chr7:7082267-7082347 12 9.87e-06 agggacctat agataaaa ccccatctcc chr9:4862964-4863044 43 2.11e-05 TTTTTTAGGC AGATAAAC CTGTGAACTT chr15:64754166-64754246 48 2.11e-05 GCTGCAGCAG AGATAAAC CGGTCCCTCT chr3:33014397-33014477 51 2.11e-05 gtcactagac agataaac tcaagtcaca chr16:20685580-20685660 60 2.11e-05 gtcactagac agataaac ccaagttgca chr16:20693249-20693329 10 2.11e-05 tcactagac agataaac tcaagttgta chr17:45955134-45955214 5 2.11e-05 AGAC AGATAAAC ACAGATGGAG chr10:80779979-80780059 49 3.23e-05 CTGGTCCAGA AGATAACA CCTCCCCACA chr2:87842262-87842342 57 3.23e-05 CTGCTGTCAG AGATAACA CACAGCCCGG chr22:36764693-36764773 4 3.23e-05 CTA AGATAACA GTGCTGGGAG chr1:28851696-28851776 39 3.23e-05 tggaatctat agataaca taaccggtta chr7:43026505-43026585 45 4.37e-05 GTGGAAAAAA AGATAAGA CTGGTGAGAG chr6:136555841-136555921 69 4.37e-05 agtctaagct agataaga atgg chr10:86284964-86285044 28 4.37e-05 acagcctcac agataaga gcggctatac chr3:150169163-150169243 58 4.37e-05 GGAATTTGCC AGATAAGA TAAATGGCAT chr10:3707760-3707840 53 5.50e-05 tgggagtcca agataaag gtgtcctcag chr7:23510290-23510370 30 6.47e-05 TGGGTTTCGG AGAAAAAA GCgagcgaga chr21:38909433-38909513 47 6.47e-05 tagtaaagtt agaaaaaa aaggggaaga chr21:38798178-38798258 12 8.85e-05 GAGAACCCTA AGATAACC AACAGAGGAG chr11:126216134-12621621 65 8.85e-05 CTCGGCAGGA AGACAAAA CAGACTCA chr8:142031984-142032064 34 8.85e-05 TCCTATTTTA AGACAAAA CAATGGCTGG chr16:9171932-9172012 68 8.85e-05 tgcggcaggc agataacc tgagg chr21:47875816-47875896 27 8.85e-05 tgtggaagag agataacc aatccccact chr11:68081499-68081579 55 8.85e-05 AACAAGGTGA AGACAAAA CAGCGACAGT chr10:43142677-43142757 7 1.12e-04 ctatac agaaaaac cccaggctct chr17:40903127-40903207 25 1.12e-04 CCTGTGTGGA AGAAAAAC AAATCCTAGC chr12:9917556-9917636 66 1.38e-04 CAATTTCCGG AGACAAAC TGCTCAT chr21:46013935-46014015 61 1.49e-04 gtccgtattc agaaaaca ggccctggca chr7:157195938-157196018 14 1.74e-04 tggctcagtg agacaaca gggcagagga chrX:15534172-15534252 63 1.74e-04 TGCTCCTCAG AGATAAGG GGTAACCCCC chr16:50875126-50875206 53 1.74e-04 cggggcgcgc AGATAAGG TCTGGGGGCG chr1:246273970-246274050 17 1.74e-04 taccttttaa agacaaca gtggcaaaga chrX:47572287-47572367 64 1.74e-04 aggtgcacta agataagg aagctaaaa chr8:128813034-128813114 30 1.74e-04 tgggttagac agataagg aacagcagac chrX:40014489-40014569 53 2.09e-04 CAGGCACTTT AGAAAAAG AGGCGAGAAG chr9:140163199-140163279 34 2.22e-04 CCAAGATGag agacaaag atgagagaca chr21:16046092-16046172 13 2.61e-04 CACTGGGGCC AGAAAAGC AGACTAAGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATAAMM MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:75245647-75245727 9.9e-06 24_[+2]_48 chr11:5617962-5618042 9.9e-06 40_[+2]_32 chr7:7082267-7082347 9.9e-06 11_[+2]_61 chr9:4862964-4863044 2.1e-05 42_[+2]_30 chr15:64754166-64754246 2.1e-05 47_[+2]_25 chr3:33014397-33014477 2.1e-05 50_[+2]_22 chr16:20685580-20685660 2.1e-05 59_[+2]_13 chr16:20693249-20693329 2.1e-05 9_[+2]_63 chr17:45955134-45955214 2.1e-05 4_[+2]_68 chr10:80779979-80780059 3.2e-05 48_[+2]_24 chr2:87842262-87842342 3.2e-05 56_[+2]_16 chr22:36764693-36764773 3.2e-05 3_[+2]_69 chr1:28851696-28851776 3.2e-05 38_[+2]_34 chr7:43026505-43026585 4.4e-05 44_[+2]_28 chr6:136555841-136555921 4.4e-05 68_[+2]_4 chr10:86284964-86285044 4.4e-05 27_[+2]_45 chr3:150169163-150169243 4.4e-05 57_[+2]_15 chr10:3707760-3707840 5.5e-05 52_[+2]_20 chr7:23510290-23510370 6.5e-05 29_[+2]_43 chr21:38909433-38909513 6.5e-05 46_[+2]_26 chr21:38798178-38798258 8.8e-05 11_[+2]_61 chr11:126216134-12621621 8.8e-05 64_[+2]_8 chr8:142031984-142032064 8.8e-05 33_[+2]_39 chr16:9171932-9172012 8.8e-05 67_[+2]_5 chr21:47875816-47875896 8.8e-05 26_[+2]_46 chr11:68081499-68081579 8.8e-05 54_[+2]_18 chr10:43142677-43142757 0.00011 6_[+2]_66 chr17:40903127-40903207 0.00011 24_[+2]_48 chr12:9917556-9917636 0.00014 65_[+2]_7 chr21:46013935-46014015 0.00015 60_[+2]_12 chr7:157195938-157196018 0.00017 13_[+2]_59 chrX:15534172-15534252 0.00017 62_[+2]_10 chr16:50875126-50875206 0.00017 52_[+2]_20 chr1:246273970-246274050 0.00017 16_[+2]_56 chrX:47572287-47572367 0.00017 63_[+2]_9 chr8:128813034-128813114 0.00017 29_[+2]_43 chrX:40014489-40014569 0.00021 52_[+2]_20 chr9:140163199-140163279 0.00022 33_[+2]_39 chr21:16046092-16046172 0.00026 12_[+2]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATAAMM MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGATAAMM width=8 seqs=39 chr11:75245647-75245727 ( 25) AGATAAAA 1 chr11:5617962-5618042 ( 41) AGATAAAA 1 chr7:7082267-7082347 ( 12) AGATAAAA 1 chr9:4862964-4863044 ( 43) AGATAAAC 1 chr15:64754166-64754246 ( 48) AGATAAAC 1 chr3:33014397-33014477 ( 51) AGATAAAC 1 chr16:20685580-20685660 ( 60) AGATAAAC 1 chr16:20693249-20693329 ( 10) AGATAAAC 1 chr17:45955134-45955214 ( 5) AGATAAAC 1 chr10:80779979-80780059 ( 49) AGATAACA 1 chr2:87842262-87842342 ( 57) AGATAACA 1 chr22:36764693-36764773 ( 4) AGATAACA 1 chr1:28851696-28851776 ( 39) AGATAACA 1 chr7:43026505-43026585 ( 45) AGATAAGA 1 chr6:136555841-136555921 ( 69) AGATAAGA 1 chr10:86284964-86285044 ( 28) AGATAAGA 1 chr3:150169163-150169243 ( 58) AGATAAGA 1 chr10:3707760-3707840 ( 53) AGATAAAG 1 chr7:23510290-23510370 ( 30) AGAAAAAA 1 chr21:38909433-38909513 ( 47) AGAAAAAA 1 chr21:38798178-38798258 ( 12) AGATAACC 1 chr11:126216134-12621621 ( 65) AGACAAAA 1 chr8:142031984-142032064 ( 34) AGACAAAA 1 chr16:9171932-9172012 ( 68) AGATAACC 1 chr21:47875816-47875896 ( 27) AGATAACC 1 chr11:68081499-68081579 ( 55) AGACAAAA 1 chr10:43142677-43142757 ( 7) AGAAAAAC 1 chr17:40903127-40903207 ( 25) AGAAAAAC 1 chr12:9917556-9917636 ( 66) AGACAAAC 1 chr21:46013935-46014015 ( 61) AGAAAACA 1 chr7:157195938-157196018 ( 14) AGACAACA 1 chrX:15534172-15534252 ( 63) AGATAAGG 1 chr16:50875126-50875206 ( 53) AGATAAGG 1 chr1:246273970-246274050 ( 17) AGACAACA 1 chrX:47572287-47572367 ( 64) AGATAAGG 1 chr8:128813034-128813114 ( 30) AGATAAGG 1 chrX:40014489-40014569 ( 53) AGAAAAAG 1 chr9:140163199-140163279 ( 34) AGACAAAG 1 chr21:16046092-16046172 ( 13) AGAAAAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATAAMM MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.9222 E= 8.9e-008 211 -1193 -1193 -1193 -1193 -1193 191 -1193 211 -1193 -1193 -1193 -37 -56 -1193 143 211 -1193 -1193 -1193 211 -1193 -1193 -1193 114 -4 -21 -1193 107 33 -57 -1193 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATAAMM MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 39 E= 8.9e-008 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.179487 0.179487 0.000000 0.641026 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.512821 0.256410 0.230769 0.000000 0.487179 0.333333 0.179487 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATAAMM MEME-2 regular expression -------------------------------------------------------------------------------- AGATAA[ACG][AC] -------------------------------------------------------------------------------- Time 8.89 secs. ******************************************************************************** ******************************************************************************** MOTIF AGGGRAAG MEME-3 width = 8 sites = 23 llr = 207 E-value = 4.5e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGGGRAAG MEME-3 Description -------------------------------------------------------------------------------- Simplified A a:3:5a7: pos.-specific C :::::::: probability G :a7a5:3a matrix T :::::::: bits 2.1 * 1.9 ** * * * 1.7 ** * * * 1.5 ** * * * Relative 1.3 ** * *** Entropy 1.1 ******** (13.0 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGGGGAAG consensus A A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGRAAG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:35411452-35411532 13 1.47e-05 cctcgtggga agggaaag acctgaccat chr12:27170418-27170498 6 1.47e-05 cctga agggaaag gaatgtactt chr20:33780338-33780418 47 1.47e-05 gtgcacctga agggaaag gaatgtgctt chr6:134339210-134339290 2 1.47e-05 G AGGGAAAG AAGACCACAG chrX:79767972-79768052 44 1.47e-05 gtgtgcctaa agggaaag gaatgtgctt chr3:14162529-14162609 70 1.47e-05 gtacacctga agggaaag gaa chr4:68418030-68418110 72 1.47e-05 gtgcacctga agggaaag g chr5:74863644-74863724 58 3.17e-05 AGCCTAAACA AGGGGAAG CCTCCTACAG chr4:1884776-1884856 50 3.17e-05 aggagagatg aggggaag ttctggtgcc chr21:38909433-38909513 56 3.17e-05 tagaaaaaaa aggggaag aaaggtgggg chr2:38742952-38743032 55 6.14e-05 ggacagtgtg agagaaag ctgttgataa chr1:16472841-16472921 2 6.14e-05 G AGGGAAGG CTGCCCCGCT chr6:108899925-108900005 29 6.14e-05 GGGACATGTG AGAGAAAG ATAGGATAAA chr20:4654468-4654548 23 6.14e-05 tgggccagat agggaagg tctggtttag chr7:43026505-43026585 4 9.56e-05 GAA AGAGGAAG GGTGTAGGGG chr7:157195938-157196018 26 9.56e-05 acaacagggc agaggaag cagtcagata chr18:46307760-46307840 41 9.56e-05 GGTGGTGACC AGGGGAGG CAGCCAGGCT chr4:145061855-145061935 71 9.56e-05 GCTGATAGGC AGGGGAGG CA chr4:144826748-144826828 50 9.56e-05 GCTGATAGGC AGGGGAGG CATTTTAAAT chr4:144940573-144940653 5 9.56e-05 AGGC AGGGGAGG CATTTTAAAT chr14:88491083-88491163 51 9.56e-05 gattagtgaa agaggaag gcctctttgc chr18:9885629-9885709 36 1.27e-04 GACACTTTGC AGAGGAGG CTAACATGGT chr11:59383439-59383519 17 1.60e-04 ATCAGACTTT TGGGGAAG CTCATTGGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGRAAG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:35411452-35411532 1.5e-05 12_[+3]_60 chr12:27170418-27170498 1.5e-05 5_[+3]_67 chr20:33780338-33780418 1.5e-05 46_[+3]_26 chr6:134339210-134339290 1.5e-05 1_[+3]_71 chrX:79767972-79768052 1.5e-05 43_[+3]_29 chr3:14162529-14162609 1.5e-05 69_[+3]_3 chr4:68418030-68418110 1.5e-05 71_[+3]_1 chr5:74863644-74863724 3.2e-05 57_[+3]_15 chr4:1884776-1884856 3.2e-05 49_[+3]_23 chr21:38909433-38909513 3.2e-05 55_[+3]_17 chr2:38742952-38743032 6.1e-05 54_[+3]_18 chr1:16472841-16472921 6.1e-05 1_[+3]_71 chr6:108899925-108900005 6.1e-05 28_[+3]_44 chr20:4654468-4654548 6.1e-05 22_[+3]_50 chr7:43026505-43026585 9.6e-05 3_[+3]_69 chr7:157195938-157196018 9.6e-05 25_[+3]_47 chr18:46307760-46307840 9.6e-05 40_[+3]_32 chr4:145061855-145061935 9.6e-05 70_[+3]_2 chr4:144826748-144826828 9.6e-05 49_[+3]_23 chr4:144940573-144940653 9.6e-05 4_[+3]_68 chr14:88491083-88491163 9.6e-05 50_[+3]_22 chr18:9885629-9885709 0.00013 35_[+3]_37 chr11:59383439-59383519 0.00016 16_[+3]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGRAAG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGGGRAAG width=8 seqs=23 chr19:35411452-35411532 ( 13) AGGGAAAG 1 chr12:27170418-27170498 ( 6) AGGGAAAG 1 chr20:33780338-33780418 ( 47) AGGGAAAG 1 chr6:134339210-134339290 ( 2) AGGGAAAG 1 chrX:79767972-79768052 ( 44) AGGGAAAG 1 chr3:14162529-14162609 ( 70) AGGGAAAG 1 chr4:68418030-68418110 ( 72) AGGGAAAG 1 chr5:74863644-74863724 ( 58) AGGGGAAG 1 chr4:1884776-1884856 ( 50) AGGGGAAG 1 chr21:38909433-38909513 ( 56) AGGGGAAG 1 chr2:38742952-38743032 ( 55) AGAGAAAG 1 chr1:16472841-16472921 ( 2) AGGGAAGG 1 chr6:108899925-108900005 ( 29) AGAGAAAG 1 chr20:4654468-4654548 ( 23) AGGGAAGG 1 chr7:43026505-43026585 ( 4) AGAGGAAG 1 chr7:157195938-157196018 ( 26) AGAGGAAG 1 chr18:46307760-46307840 ( 41) AGGGGAGG 1 chr4:145061855-145061935 ( 71) AGGGGAGG 1 chr4:144826748-144826828 ( 50) AGGGGAGG 1 chr4:144940573-144940653 ( 5) AGGGGAGG 1 chr14:88491083-88491163 ( 51) AGAGGAAG 1 chr18:9885629-9885709 ( 36) AGAGGAGG 1 chr11:59383439-59383519 ( 17) TGGGGAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGRAAG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.23674 E= 4.5e+000 204 -1117 -1117 -244 -1117 -1117 191 -1117 17 -1117 147 -1117 -1117 -1117 191 -1117 104 -1117 97 -1117 211 -1117 -1117 -1117 158 -1117 19 -1117 -1117 -1117 191 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGRAAG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 4.5e+000 0.956522 0.000000 0.000000 0.043478 0.000000 0.000000 1.000000 0.000000 0.260870 0.000000 0.739130 0.000000 0.000000 0.000000 1.000000 0.000000 0.478261 0.000000 0.521739 0.000000 1.000000 0.000000 0.000000 0.000000 0.695652 0.000000 0.304348 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGRAAG MEME-3 regular expression -------------------------------------------------------------------------------- AG[GA]G[GA]A[AG]G -------------------------------------------------------------------------------- Time 12.57 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGCTGCA MEME-4 width = 8 sites = 10 llr = 105 E-value = 1.9e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGCTGCA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a::::2a pos.-specific C a::a::8: probability G ::a::a:: matrix T ::::a::: bits 2.1 * * * 1.9 ****** * 1.7 ****** * 1.5 ****** * Relative 1.3 ******** Entropy 1.1 ******** (15.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAGCTGCA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGCA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr10:43140695-43140775 33 1.67e-05 ctccctagca cagctgca aagttacaag chr15:65529470-65529550 57 1.67e-05 AGGCTGAAGC CAGCTGCA GCCTTGGCCC chrX:47535574-47535654 52 1.67e-05 ggtatgcctg cagctgca ggaagatgta chr3:33014397-33014477 31 1.67e-05 cctggctgtg cagctgca aggtcactag chr3:14162529-14162609 12 1.67e-05 catctttctg cagctgca ggcatatccc chr16:20685580-20685660 40 1.67e-05 tctagctgtg cagctgca aggtcactag chr9:119449469-119449549 29 1.67e-05 CGCTTGGGGC CAGCTGCA CGACAAGCCC chr9:127421481-127421561 66 1.67e-05 ACAGGTCAGC CAGCTGCA GGGGCGG chr8:22743897-22743977 64 3.14e-05 ctttaaaatg cagctgaa aacaatgcc chr6:139811760-139811840 20 3.14e-05 ggtacagaaa cagctgaa ttggttacag -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGCA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:43140695-43140775 1.7e-05 32_[+4]_40 chr15:65529470-65529550 1.7e-05 56_[+4]_16 chrX:47535574-47535654 1.7e-05 51_[+4]_21 chr3:33014397-33014477 1.7e-05 30_[+4]_42 chr3:14162529-14162609 1.7e-05 11_[+4]_61 chr16:20685580-20685660 1.7e-05 39_[+4]_33 chr9:119449469-119449549 1.7e-05 28_[+4]_44 chr9:127421481-127421561 1.7e-05 65_[+4]_7 chr8:22743897-22743977 3.1e-05 63_[+4]_9 chr6:139811760-139811840 3.1e-05 19_[+4]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGCA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGCTGCA width=8 seqs=10 chr10:43140695-43140775 ( 33) CAGCTGCA 1 chr15:65529470-65529550 ( 57) CAGCTGCA 1 chrX:47535574-47535654 ( 52) CAGCTGCA 1 chr3:33014397-33014477 ( 31) CAGCTGCA 1 chr3:14162529-14162609 ( 12) CAGCTGCA 1 chr16:20685580-20685660 ( 40) CAGCTGCA 1 chr9:119449469-119449549 ( 29) CAGCTGCA 1 chr9:127421481-127421561 ( 66) CAGCTGCA 1 chr8:22743897-22743977 ( 64) CAGCTGAA 1 chr6:139811760-139811840 ( 20) CAGCTGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGCA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.0846 E= 1.9e+002 -997 192 -997 -997 211 -997 -997 -997 -997 -997 191 -997 -997 192 -997 -997 -997 -997 -997 208 -997 -997 191 -997 -21 160 -997 -997 211 -997 -997 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGCA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 1.9e+002 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.200000 0.800000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGCA MEME-4 regular expression -------------------------------------------------------------------------------- CAGCTG[CA]A -------------------------------------------------------------------------------- Time 16.19 secs. ******************************************************************************** ******************************************************************************** MOTIF CCAGACAS MEME-5 width = 8 sites = 12 llr = 120 E-value = 2.4e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCAGACAS MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::a:a:a: pos.-specific C aa:::a:5 probability G :::a:::3 matrix T :::::::2 bits 2.1 * * * 1.9 ******* 1.7 ******* 1.5 ******* Relative 1.3 ******* Entropy 1.1 ******* (14.5 bits) 0.8 ******* 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCAGACAC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGACAS MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:119646088-119646168 54 1.62e-05 acccttatct ccagacac tggcaaatgt chr19:18402723-18402803 63 1.62e-05 GTACTAGCAG CCAGACAC GGACACGCCC chr5:131758484-131758564 30 1.62e-05 TGCATTATCT CCAGACAC AGGTTGGCCT chr1:195868183-195868263 54 1.62e-05 attcttatca ccagacac agggaatcga chr14:88491083-88491163 9 1.62e-05 tcccccag ccagacac ccgtaaaggg chr19:47734654-47734734 64 1.62e-05 GGGAGATCGC CCAGACAC CGGGACAGT chr6:108899925-108900005 7 3.26e-05 TCATCC CCAGACAG ACATGGGACA chr11:12834576-12834656 56 3.26e-05 GGAGGGCAAG CCAGACAG TCCAGCCGGC chr17:40903127-40903207 42 3.26e-05 CAAATCCTAG CCAGACAG GAAAAGGGAG chr9:127421481-127421561 15 3.26e-05 CGAGCCAAAA CCAGACAG TCCTGGCCGT chr6:27741817-27741897 47 4.71e-05 tctatagttt ccagacat tgtatggaaa chr1:61918921-61919001 30 4.71e-05 CTCTTAGCAA CCAGACAT GATGTAACAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGACAS MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:119646088-119646168 1.6e-05 53_[+5]_19 chr19:18402723-18402803 1.6e-05 62_[+5]_10 chr5:131758484-131758564 1.6e-05 29_[+5]_43 chr1:195868183-195868263 1.6e-05 53_[+5]_19 chr14:88491083-88491163 1.6e-05 8_[+5]_64 chr19:47734654-47734734 1.6e-05 63_[+5]_9 chr6:108899925-108900005 3.3e-05 6_[+5]_66 chr11:12834576-12834656 3.3e-05 55_[+5]_17 chr17:40903127-40903207 3.3e-05 41_[+5]_31 chr9:127421481-127421561 3.3e-05 14_[+5]_58 chr6:27741817-27741897 4.7e-05 46_[+5]_26 chr1:61918921-61919001 4.7e-05 29_[+5]_43 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGACAS MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCAGACAS width=8 seqs=12 chr6:119646088-119646168 ( 54) CCAGACAC 1 chr19:18402723-18402803 ( 63) CCAGACAC 1 chr5:131758484-131758564 ( 30) CCAGACAC 1 chr1:195868183-195868263 ( 54) CCAGACAC 1 chr14:88491083-88491163 ( 9) CCAGACAC 1 chr19:47734654-47734734 ( 64) CCAGACAC 1 chr6:108899925-108900005 ( 7) CCAGACAG 1 chr11:12834576-12834656 ( 56) CCAGACAG 1 chr17:40903127-40903207 ( 42) CCAGACAG 1 chr9:127421481-127421561 ( 15) CCAGACAG 1 chr6:27741817-27741897 ( 47) CCAGACAT 1 chr1:61918921-61919001 ( 30) CCAGACAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGACAS MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2284 E= 2.4e+002 -1023 192 -1023 -1023 -1023 192 -1023 -1023 211 -1023 -1023 -1023 -1023 -1023 191 -1023 211 -1023 -1023 -1023 -1023 192 -1023 -1023 211 -1023 -1023 -1023 -1023 92 32 -51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGACAS MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 2.4e+002 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.333333 0.166667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGACAS MEME-5 regular expression -------------------------------------------------------------------------------- CCAGACA[CG] -------------------------------------------------------------------------------- Time 19.79 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:47734654-47734734 1.81e-02 63_[+5(1.62e-05)]_9 chr7:150694270-150694350 7.88e-02 80 chr11:85780957-85781037 2.04e-01 80 chr16:70471107-70471187 2.72e-02 80 chr9:19161755-19161835 7.88e-02 16_[+1(7.39e-05)]_56 chr4:174255751-174255831 5.43e-01 80 chr6:26053115-26053195 6.98e-01 80 chr7:129882122-129882202 4.58e-02 80 chr16:23690109-23690189 9.70e-01 80 chr9:127421481-127421561 2.10e-04 14_[+5(3.26e-05)]_43_[+4(1.67e-05)]_\ 7 chr12:2113777-2113857 4.61e-01 80 chr17:28054026-28054106 5.86e-02 80 chr4:145000044-145000124 4.26e-01 80 chr16:20756323-20756403 3.58e-02 80 chr1:25611732-25611812 6.82e-01 80 chr14:88491083-88491163 1.75e-03 8_[+5(1.62e-05)]_34_[+3(9.56e-05)]_\ 22 chr11:68081499-68081579 1.26e-03 54_[+2(8.85e-05)]_18 chr6:26206358-26206438 1.51e-02 34_[+1(1.21e-05)]_38 chr20:61196070-61196150 9.86e-01 80 chr4:144896824-144896904 4.26e-01 80 chr8:128813034-128813114 1.44e-02 80 chr1:30664116-30664196 6.96e-01 80 chr17:38574265-38574345 5.06e-01 80 chr21:22572590-22572670 6.24e-01 80 chr11:876059-876139 1.26e-01 80 chr17:45955134-45955214 2.63e-04 4_[+2(2.11e-05)]_68 chr10:7294216-7294296 8.71e-02 80 chr9:119449469-119449549 5.15e-03 28_[+4(1.67e-05)]_44 chr1:167832665-167832745 4.50e-01 80 chr19:34818929-34819009 1.52e-01 80 chr17:74261104-74261184 5.16e-01 80 chr3:124597942-124598022 9.76e-02 80 chr17:58042346-58042426 9.68e-01 80 chr20:54967287-54967367 2.72e-01 80 chr11:67423952-67424032 2.14e-02 80 chr21:47875816-47875896 9.40e-03 26_[+2(8.85e-05)]_46 chr12:7126154-7126234 9.98e-01 80 chr12:131834846-13183492 2.04e-01 80 chr16:20693249-20693329 6.70e-03 9_[+2(2.11e-05)]_63 chr3:39430275-39430355 1.06e-01 80 chr21:35348530-35348610 2.40e-02 62_[+1(8.79e-05)]_10 chr6:139811760-139811840 7.15e-03 19_[+4(3.14e-05)]_53 chr4:144940573-144940653 1.03e-01 4_[+3(9.56e-05)]_68 chr8:67967436-67967516 1.50e-01 80 chr5:158635122-158635202 9.09e-01 80 chr7:120681992-120682072 7.13e-01 80 chr7:7082267-7082347 7.82e-04 11_[+2(9.87e-06)]_61 chr1:61918921-61919001 2.45e-02 29_[+5(4.71e-05)]_43 chrX:47572287-47572367 1.41e-02 80 chr4:68418030-68418110 4.24e-04 71_[+3(1.47e-05)]_1 chr21:38909433-38909513 9.18e-03 46_[+2(6.47e-05)]_1_[+3(3.17e-05)]_\ 17 chr7:12443294-12443374 2.98e-01 80 chr16:20685580-20685660 1.02e-04 39_[+4(1.67e-05)]_12_[+2(2.11e-05)]_\ 13 chr1:52541460-52541540 6.87e-02 80 chr4:144826748-144826828 6.52e-04 1_[+1(3.78e-05)]_40_[+3(9.56e-05)]_\ 23 chr3:150318722-150318802 1.17e-01 80 chr11:85780248-85780328 5.30e-01 80 chr16:86962954-86963034 2.18e-01 80 chr7:43617244-43617324 2.14e-02 32_[+1(5.13e-05)]_40 chr3:14162529-14162609 2.17e-05 11_[+4(1.67e-05)]_50_[+3(1.47e-05)]_\ 3 chr16:9171932-9172012 5.42e-02 67_[+2(8.85e-05)]_5 chr1:32487459-32487539 6.10e-01 80 chr8:22743897-22743977 6.21e-04 47_[+1(1.21e-05)]_8_[+4(3.14e-05)]_\ 9 chr8:25316523-25316603 6.70e-01 80 chrX:79767972-79768052 2.28e-03 43_[+3(1.47e-05)]_29 chr9:124813843-124813923 2.67e-01 80 chr19:51727589-51727669 5.52e-01 80 chr1:65743499-65743579 1.23e-01 6_[+1(3.78e-05)]_66 chr6:111805286-111805366 4.41e-01 80 chr20:30505910-30505990 3.48e-02 58_[+1(1.21e-05)]_14 chr15:45027856-45027936 7.53e-01 80 chr10:5514444-5514524 2.30e-01 80 chr1:151032026-151032106 7.51e-01 80 chr20:53710994-53711074 5.55e-03 80 chr6:27791716-27791796 8.89e-01 80 chr4:48731350-48731430 5.70e-02 80 chr6:134339210-134339290 1.13e-02 1_[+3(1.47e-05)]_71 chr2:176800476-176800556 2.34e-02 80 chr6:7975458-7975538 1.18e-02 70_[+1(3.78e-05)]_2 chr17:31221461-31221541 1.25e-01 80 chr17:62919234-62919314 3.03e-01 80 chr16:53133614-53133694 2.81e-01 80 chr12:53773585-53773665 4.38e-01 80 chr12:109249758-10924983 1.41e-02 11_[+1(8.79e-05)]_61 chr8:142031984-142032064 3.65e-02 33_[+2(8.85e-05)]_39 chr4:170548112-170548192 5.18e-02 49_[+1(1.21e-05)]_23 chr3:33014397-33014477 1.11e-04 30_[+4(1.67e-05)]_12_[+2(2.11e-05)]_\ 22 chr16:68018914-68018994 4.27e-01 80 chr18:11947324-11947404 8.67e-01 80 chr18:9885629-9885709 4.46e-02 80 chrX:77166004-77166084 1.22e-01 80 chr9:94909653-94909733 5.60e-01 80 chr21:16046092-16046172 7.96e-02 80 chr20:33780338-33780418 6.83e-04 46_[+3(1.47e-05)]_26 chr13:95923425-95923505 1.67e-01 80 chr2:208825014-208825094 3.26e-01 80 chr19:944266-944346 1.32e-01 80 chr7:150015198-150015278 7.16e-02 80 chr4:144775956-144776036 4.26e-01 80 chr16:68113834-68113914 1.90e-01 52_[+3(9.56e-05)]_20 chr19:7894861-7894941 9.81e-01 80 chr11:5617962-5618042 6.66e-02 40_[+2(9.87e-06)]_32 chr1:116915593-116915673 3.71e-01 80 chr7:2811013-2811093 6.73e-02 80 chr17:40903127-40903207 8.89e-04 41_[+5(3.26e-05)]_31 chr15:63449483-63449563 2.85e-01 80 chr19:52193800-52193880 2.96e-01 80 chr6:50927063-50927143 1.30e-01 80 chr12:27170418-27170498 9.86e-02 5_[+3(1.47e-05)]_67 chr2:113522209-113522289 9.99e-01 80 chr3:160117376-160117456 8.72e-02 80 chr7:129772277-129772357 2.97e-01 80 chr21:25294643-25294723 2.44e-01 80 chr16:70470067-70470147 6.39e-01 80 chr1:207809076-207809156 1.43e-01 80 chr3:172468467-172468547 1.22e-01 80 chr4:145061855-145061935 6.52e-04 22_[+1(3.78e-05)]_40_[+3(9.56e-05)]_\ 2 chr6:153304194-153304274 9.99e-01 80 chrX:40032090-40032170 2.86e-01 80 chr3:5123776-5123856 4.24e-01 80 chrX:47542990-47543070 7.44e-01 80 chr19:35411452-35411532 3.36e-02 12_[+3(1.47e-05)]_60 chr1:195868183-195868263 2.56e-04 45_[+1(7.39e-05)]_[+5(1.62e-05)]_19 chr10:3707760-3707840 3.53e-02 52_[+2(5.50e-05)]_20 chr18:3526714-3526794 9.09e-03 80 chr22:29591788-29591868 7.37e-01 80 chr15:74682272-74682352 7.88e-01 80 chr19:10828469-10828549 5.01e-01 80 chr11:126216134-12621621 5.11e-03 48_[+1(6.21e-05)]_8_[+2(8.85e-05)]_\ 8 chr21:46013935-46014015 3.06e-01 80 chr21:38798178-38798258 1.20e-01 11_[+2(8.85e-05)]_61 chr6:27799381-27799461 3.45e-01 80 chr16:85595000-85595080 1.04e-01 30_[+1(5.13e-05)]_42 chr3:150169163-150169243 6.45e-03 57_[+2(4.37e-05)]_15 chr10:43142677-43142757 2.42e-02 80 chr1:211395915-211395995 1.03e-03 46_[+1(1.21e-05)]_26 chr19:29037215-29037295 1.70e-01 80 chr3:160167699-160167779 7.55e-01 80 chr2:219262608-219262688 2.48e-01 80 chr5:60116665-60116745 2.29e-02 80 chr19:41370674-41370754 3.47e-01 80 chr10:98379057-98379137 1.34e-01 80 chr17:45973410-45973490 8.59e-01 80 chr5:95059392-95059472 1.40e-01 80 chr9:35728588-35728668 1.36e-01 80 chr20:4654468-4654548 3.90e-04 22_[+3(6.14e-05)]_50 chrX:65218058-65218138 1.07e-01 80 chr2:86416681-86416761 5.90e-01 80 chr1:160919218-160919298 6.69e-02 80 chr19:18484764-18484844 1.22e-01 80 chr11:12834576-12834656 5.68e-04 55_[+5(3.26e-05)]_17 chr6:43027610-43027690 9.61e-01 80 chr9:136159270-136159350 4.42e-01 80 chr11:65186427-65186507 1.09e-01 80 chr11:33958947-33959027 1.10e-02 9_[+4(6.34e-05)]_63 chr14:24725630-24725710 2.16e-01 80 chr19:53664576-53664656 1.71e-01 80 chr11:85885792-85885872 1.94e-01 80 chr1:228555773-228555853 3.80e-01 80 chr1:45732076-45732156 1.78e-01 80 chr5:131758484-131758564 7.31e-03 29_[+5(1.62e-05)]_43 chr1:28851696-28851776 8.06e-02 38_[+2(3.23e-05)]_34 chr10:11936844-11936924 5.50e-02 80 chr15:64754166-64754246 3.30e-03 47_[+2(2.11e-05)]_25 chr2:7020729-7020809 3.53e-01 30_[+1(8.79e-05)]_42 chr6:26172210-26172290 1.00e+00 80 chr1:46971608-46971688 1.84e-02 67_[+1(7.39e-05)]_5 chr2:173465540-173465620 6.30e-02 80 chr6:108899925-108900005 3.46e-04 6_[+5(3.26e-05)]_14_[+3(6.14e-05)]_\ 44 chrX:47535574-47535654 5.30e-03 51_[+4(1.67e-05)]_21 chr7:120689671-120689751 3.19e-02 31_[+1(1.21e-05)]_41 chr5:131649931-131650011 4.97e-02 80 chr11:62136558-62136638 2.52e-01 80 chr5:139990815-139990895 4.96e-02 80 chrX:40014489-40014569 7.79e-03 80 chr17:76311987-76312067 5.76e-01 80 chr8:130594523-130594603 1.42e-01 80 chr2:112812863-112812943 2.14e-02 48_[+1(3.78e-05)]_24 chr12:54688120-54688200 6.63e-02 80 chr3:6582851-6582931 1.51e-02 80 chr18:46307760-46307840 1.32e-01 40_[+3(9.56e-05)]_32 chr1:246273970-246274050 5.85e-02 80 chr7:5123150-5123230 5.95e-01 80 chr7:150736584-150736664 8.21e-01 80 chr3:193571566-193571646 1.19e-01 80 chr15:65529470-65529550 4.39e-04 3_[+1(3.78e-05)]_45_[+4(1.67e-05)]_\ 16 chr1:51983766-51983846 1.05e-01 80 chr16:25565258-25565338 6.25e-02 80 chr12:4262846-4262926 5.80e-01 80 chrX:135967131-135967211 1.11e-01 80 chr8:580816-580896 2.24e-01 80 chr10:86284964-86285044 2.77e-03 27_[+2(4.37e-05)]_45 chr17:26368566-26368646 2.71e-01 80 chr8:91658646-91658726 9.90e-01 80 chr8:98790809-98790889 2.01e-01 80 chr6:27741817-27741897 3.25e-04 31_[+1(3.78e-05)]_7_[+5(4.71e-05)]_\ 26 chr16:19499323-19499403 1.81e-01 80 chr16:16116717-16116797 6.42e-02 80 chr4:1884776-1884856 3.13e-02 49_[+3(3.17e-05)]_23 chr9:101130789-101130869 4.16e-02 80 chr11:85358968-85359048 4.93e-01 80 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chr7:43026505-43026585 7.81e-03 3_[+3(9.56e-05)]_33_[+2(4.37e-05)]_\ 28 chr17:61498022-61498102 9.67e-02 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n06.farnam.hpc.yale.internal ********************************************************************************