******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/NCOA6.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr10:93170315-93170395 1.0000 80 chr19:50831814-50831894 1.0000 80 chr19:12946120-12946200 1.0000 80 chr12:100593411-10059349 1.0000 80 chr22:36783092-36783172 1.0000 80 chr20:44803232-44803312 1.0000 80 chr13:41240415-41240495 1.0000 80 chr6:109776745-109776825 1.0000 80 chr1:171810787-171810867 1.0000 80 chr20:43922351-43922431 1.0000 80 chr7:66206071-66206151 1.0000 80 chr3:152880459-152880539 1.0000 80 chr19:39998052-39998132 1.0000 80 chr2:158454026-158454106 1.0000 80 chr17:79918360-79918440 1.0000 80 chr11:34380134-34380214 1.0000 80 chr22:44319761-44319841 1.0000 80 chr20:3154579-3154659 1.0000 80 chr12:111284753-11128483 1.0000 80 chr19:42891409-42891489 1.0000 80 chr1:21043975-21044055 1.0000 80 chr14:73712826-73712906 1.0000 80 chr19:39226911-39226991 1.0000 80 chr11:65101593-65101673 1.0000 80 chr20:23285399-23285479 1.0000 80 chr16:127466-127546 1.0000 80 chr2:37552333-37552413 1.0000 80 chr19:5805742-5805822 1.0000 80 chr17:73874519-73874599 1.0000 80 chr19:12936594-12936674 1.0000 80 chr18:77748575-77748655 1.0000 80 chr3:48885099-48885179 1.0000 80 chr11:57227984-57228064 1.0000 80 chr19:13209262-13209342 1.0000 80 chr17:48227077-48227157 1.0000 80 chr18:12307953-12308033 1.0000 80 chr3:169755699-169755779 1.0000 80 chr14:50101449-50101529 1.0000 80 chr6:105401035-105401115 1.0000 80 chr12:99039165-99039245 1.0000 80 chr7:92157506-92157586 1.0000 80 chr7:103630430-103630510 1.0000 80 chr19:58858793-58858873 1.0000 80 chr17:8093104-8093184 1.0000 80 chr3:50264619-50264699 1.0000 80 chr13:99739357-99739437 1.0000 80 chr11:47207550-47207630 1.0000 80 chr15:82339667-82339747 1.0000 80 chr17:40440928-40441008 1.0000 80 chr8:104383859-104383939 1.0000 80 chr19:8274625-8274705 1.0000 80 chr8:38644926-38645006 1.0000 80 chr9:139742223-139742303 1.0000 80 chr17:42030458-42030538 1.0000 80 chr16:66959043-66959123 1.0000 80 chr15:40575127-40575207 1.0000 80 chr8:48649805-48649885 1.0000 80 chr1:33646743-33646823 1.0000 80 chr19:43967266-43967346 1.0000 80 chr3:195270563-195270643 1.0000 80 chrX:148622419-148622499 1.0000 80 chr8:94929232-94929312 1.0000 80 chr5:54522892-54522972 1.0000 80 chr10:103990928-10399100 1.0000 80 chr11:72852868-72852948 1.0000 80 chr20:33297128-33297208 1.0000 80 chr16:2478825-2478905 1.0000 80 chr6:26550941-26551021 1.0000 80 chr19:29218390-29218470 1.0000 80 chr20:44936003-44936083 1.0000 80 chr1:39957361-39957441 1.0000 80 chr1:28286522-28286602 1.0000 80 chr9:114245391-114245471 1.0000 80 chr9:103235898-103235978 1.0000 80 chr4:53525884-53525964 1.0000 80 chr16:1463837-1463917 1.0000 80 chr20:35169944-35170024 1.0000 80 chr21:35987068-35987148 1.0000 80 chr9:139872690-139872770 1.0000 80 chr3:23244792-23244872 1.0000 80 chr11:407540-407620 1.0000 80 chr6:105850588-105850668 1.0000 80 chr16:3079543-3079623 1.0000 80 chr7:152133493-152133573 1.0000 80 chr8:2480993-2481073 1.0000 80 chr12:40499251-40499331 1.0000 80 chr14:102829592-10282967 1.0000 80 chr7:30324717-30324797 1.0000 80 chr11:100998643-10099872 1.0000 80 chr14:76448677-76448757 1.0000 80 chr17:79917328-79917408 1.0000 80 chr11:66512520-66512600 1.0000 80 chr7:8009468-8009548 1.0000 80 chr19:44037896-44037976 1.0000 80 chr2:175201250-175201330 1.0000 80 chr1:71512828-71512908 1.0000 80 chr2:46524113-46524193 1.0000 80 chr3:112280515-112280595 1.0000 80 chr8:95960917-95960997 1.0000 80 chr7:50518078-50518158 1.0000 80 chr1:27339171-27339251 1.0000 80 chrX:135333304-135333384 1.0000 80 chr1:40105532-40105612 1.0000 80 chr2:10091878-10091958 1.0000 80 chr13:28024321-28024401 1.0000 80 chr7:66147362-66147442 1.0000 80 chr3:80819710-80819790 1.0000 80 chr1:1270397-1270477 1.0000 80 chr6:157695659-157695739 1.0000 80 chr19:15666920-15667000 1.0000 80 chr20:56964214-56964294 1.0000 80 chr7:128865221-128865301 1.0000 80 chr5:151304236-151304316 1.0000 80 chr17:34091648-34091728 1.0000 80 chr6:82462075-82462155 1.0000 80 chr10:33246579-33246659 1.0000 80 chr16:730188-730268 1.0000 80 chr2:24715013-24715093 1.0000 80 chr1:16543677-16543757 1.0000 80 chr1:9749263-9749343 1.0000 80 chr13:48878004-48878084 1.0000 80 chr5:180596839-180596919 1.0000 80 chr1:63782689-63782769 1.0000 80 chr22:29999761-29999841 1.0000 80 chr11:14913478-14913558 1.0000 80 chr3:50310736-50310816 1.0000 80 chr19:58873352-58873432 1.0000 80 chrX:134655393-134655473 1.0000 80 chr19:55865870-55865950 1.0000 80 chr10:92617255-92617335 1.0000 80 chr2:239148986-239149066 1.0000 80 chr19:57702711-57702791 1.0000 80 chr1:6500293-6500373 1.0000 80 chr16:29823683-29823763 1.0000 80 chr11:9286366-9286446 1.0000 80 chr1:94884095-94884175 1.0000 80 chr15:78369635-78369715 1.0000 80 chr4:183727848-183727928 1.0000 80 chr2:242673744-242673824 1.0000 80 chr19:41110383-41110463 1.0000 80 chr12:50100927-50101007 1.0000 80 chr14:50065319-50065399 1.0000 80 chr15:62360720-62360800 1.0000 80 chr19:18335749-18335829 1.0000 80 chr11:2950896-2950976 1.0000 80 chr11:9780195-9780275 1.0000 80 chr17:72733101-72733181 1.0000 80 chr7:98972026-98972106 1.0000 80 chr1:246670394-246670474 1.0000 80 chr9:80850920-80851000 1.0000 80 chr2:64371348-64371428 1.0000 80 chrX:149106752-149106832 1.0000 80 chr1:27930877-27930957 1.0000 80 chr9:133556371-133556451 1.0000 80 chrX:133507254-133507334 1.0000 80 chr17:44344638-44344718 1.0000 80 chr16:58060250-58060330 1.0000 80 chr20:307327-307407 1.0000 80 chr2:43864666-43864746 1.0000 80 chr19:41119465-41119545 1.0000 80 chr21:34143529-34143609 1.0000 80 chr19:38746868-38746948 1.0000 80 chr15:70393009-70393089 1.0000 80 chr19:10444553-10444633 1.0000 80 chr20:10654854-10654934 1.0000 80 chr9:128509802-128509882 1.0000 80 chr7:35839911-35839991 1.0000 80 chr11:726625-726705 1.0000 80 chr22:25844008-25844088 1.0000 80 chr12:2861942-2862022 1.0000 80 chr1:27986569-27986649 1.0000 80 chr18:60384077-60384157 1.0000 80 chr6:2766142-2766222 1.0000 80 chr19:57149512-57149592 1.0000 80 chr8:142726263-142726343 1.0000 80 chr5:150036043-150036123 1.0000 80 chr16:49192108-49192188 1.0000 80 chr6:170101649-170101729 1.0000 80 chr9:125703413-125703493 1.0000 80 chr19:55880660-55880740 1.0000 80 chr19:50528363-50528443 1.0000 80 chr11:10329823-10329903 1.0000 80 chr19:46388920-46389000 1.0000 80 chr17:58677775-58677855 1.0000 80 chr19:58829019-58829099 1.0000 80 chr15:45694763-45694843 1.0000 80 chr4:3294272-3294352 1.0000 80 chr22:22652171-22652251 1.0000 80 chr6:168226147-168226227 1.0000 80 chr17:655072-655152 1.0000 80 chr19:44293356-44293436 1.0000 80 chr17:47755413-47755493 1.0000 80 chr16:451993-452073 1.0000 80 chr16:4897813-4897893 1.0000 80 chr1:55007916-55007996 1.0000 80 chr15:85525703-85525783 1.0000 80 chr17:43325376-43325456 1.0000 80 chr19:13107444-13107524 1.0000 80 chr14:31028411-31028491 1.0000 80 chr15:85144400-85144480 1.0000 80 chr10:104155183-10415526 1.0000 80 chr5:180597042-180597122 1.0000 80 chr8:37558038-37558118 1.0000 80 chr19:17530976-17531056 1.0000 80 chr22:51038640-51038720 1.0000 80 chr7:75947672-75947752 1.0000 80 chr6:169852568-169852648 1.0000 80 chr17:40574996-40575076 1.0000 80 chr1:109419859-109419939 1.0000 80 chr6:28956341-28956421 1.0000 80 chr5:139145361-139145441 1.0000 80 chr13:37633601-37633681 1.0000 80 chr7:66147566-66147646 1.0000 80 chr9:94712110-94712190 1.0000 80 chr17:79885869-79885949 1.0000 80 chr7:32997262-32997342 1.0000 80 chr17:80606302-80606382 1.0000 80 chr17:25783519-25783599 1.0000 80 chr3:9746081-9746161 1.0000 80 chr19:5827556-5827636 1.0000 80 chr17:34900437-34900517 1.0000 80 chr19:8408031-8408111 1.0000 80 chr19:10445923-10446003 1.0000 80 chr20:36255538-36255618 1.0000 80 chr2:25474787-25474867 1.0000 80 chr17:79259283-79259363 1.0000 80 chr19:41035050-41035130 1.0000 80 chr21:44494760-44494840 1.0000 80 chr5:180644386-180644466 1.0000 80 chr7:31154723-31154803 1.0000 80 chr9:4793070-4793150 1.0000 80 chrX:148713158-148713238 1.0000 80 chr2:128644059-128644139 1.0000 80 chr19:38085663-38085743 1.0000 80 chr19:46367125-46367205 1.0000 80 chr8:2075715-2075795 1.0000 80 chr20:10200254-10200334 1.0000 80 chr8:91997142-91997222 1.0000 80 chr7:20837890-20837970 1.0000 80 chr10:86051315-86051395 1.0000 80 chr2:227700739-227700819 1.0000 80 chr3:195163385-195163465 1.0000 80 chr14:75422075-75422155 1.0000 80 chr11:73020183-73020263 1.0000 80 chr9:128845121-128845201 1.0000 80 chr16:57318444-57318524 1.0000 80 chrX:12810089-12810169 1.0000 80 chr1:224033258-224033338 1.0000 80 chr6:99282560-99282640 1.0000 80 chr19:57874719-57874799 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_NCOA6/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/NCOA6.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.152 C 0.341 G 0.347 T 0.16 Background letter frequencies (from file dataset with add-one prior applied): A 0.152 C 0.341 G 0.347 T 0.16 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AMACWAAA MEME-1 width = 8 sites = 2 llr = 25 E-value = 1.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif AMACWAAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A a5a:5aaa pos.-specific C :5:a:::: probability G :::::::: matrix T ::::5::: bits 2.7 * * *** 2.4 * * *** 2.2 * * *** 1.9 * * *** Relative 1.6 * ****** Entropy 1.4 * ****** (17.9 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel AAACAAAA consensus C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMACWAAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:157695659-157695739 59 1.31e-06 ACCAGACAGA AAACAAAA GAGCAAAAGG chr14:102829592-10282967 36 4.26e-06 GGAGTGGCGG ACACTAAA TGCCACAACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMACWAAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:157695659-157695739 1.3e-06 58_[+1]_14 chr14:102829592-10282967 4.3e-06 35_[+1]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMACWAAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AMACWAAA width=8 seqs=2 chr6:157695659-157695739 ( 59) AAACAAAA 1 chr14:102829592-10282967 ( 36) ACACTAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMACWAAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 1.2e+004 271 -765 -765 -765 171 55 -765 -765 271 -765 -765 -765 -765 155 -765 -765 171 -765 -765 164 271 -765 -765 -765 271 -765 -765 -765 271 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMACWAAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.2e+004 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMACWAAA MEME-1 regular expression -------------------------------------------------------------------------------- A[AC]AC[AT]AAA -------------------------------------------------------------------------------- Time 5.06 secs. ******************************************************************************** ******************************************************************************** MOTIF TGARKAAA MEME-2 width = 8 sites = 5 llr = 59 E-value = 6.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGARKAAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::a4:aaa pos.-specific C :::::::: probability G :a:44::: matrix T a::26::: bits 2.7 * * *** 2.4 * * *** 2.2 * * *** 1.9 * * *** Relative 1.6 *** *** Entropy 1.4 *** **** (17.0 bits) 1.1 *** **** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TGAATAAA consensus GG sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGARKAAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:41110383-41110463 72 7.21e-07 GACATGAAAG TGAATAAA C chr19:58829019-58829099 47 1.48e-06 atggtagtta tgattaaa ttcaaataaa chr14:31028411-31028491 69 3.12e-06 CTCTCCTTGG TGAGTAAA TGGG chr11:726625-726705 56 4.69e-06 AAGGAGGAGC TGAAGAAA GTGTGCGGCG chr19:57702711-57702791 19 9.90e-06 GTTGAACACA TGAGGAAA ACTACACTAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGARKAAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:41110383-41110463 7.2e-07 71_[+2]_1 chr19:58829019-58829099 1.5e-06 46_[+2]_26 chr14:31028411-31028491 3.1e-06 68_[+2]_4 chr11:726625-726705 4.7e-06 55_[+2]_17 chr19:57702711-57702791 9.9e-06 18_[+2]_54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGARKAAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGARKAAA width=8 seqs=5 chr19:41110383-41110463 ( 72) TGAATAAA 1 chr19:58829019-58829099 ( 47) TGATTAAA 1 chr14:31028411-31028491 ( 69) TGAGTAAA 1 chr11:726625-726705 ( 56) TGAAGAAA 1 chr19:57702711-57702791 ( 19) TGAGGAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGARKAAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.7769 E= 6.6e+003 -897 -897 -897 264 -897 -897 153 -897 271 -897 -897 -897 139 -897 21 32 -897 -897 21 190 271 -897 -897 -897 271 -897 -897 -897 271 -897 -897 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGARKAAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 6.6e+003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.400000 0.000000 0.400000 0.200000 0.000000 0.000000 0.400000 0.600000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGARKAAA MEME-2 regular expression -------------------------------------------------------------------------------- TGA[AGT][TG]AAA -------------------------------------------------------------------------------- Time 8.86 secs. ******************************************************************************** ******************************************************************************** MOTIF TTCCTGTC MEME-3 width = 8 sites = 8 llr = 86 E-value = 1.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTCCTGTC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::9a:3:a probability G :::::8:: matrix T aa1:a:a: bits 2.7 ** * * 2.4 ** * * 2.2 ** * * 1.9 ** * * Relative 1.6 ** ** ** Entropy 1.4 ** ** ** (15.5 bits) 1.1 ***** ** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TTCCTGTC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCCTGTC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:46367125-46367205 43 9.02e-06 AGCCTCAGTC TTCCTGTC TGTCCAATGG chr2:25474787-25474867 22 9.02e-06 CCGGCTGCTC TTCCTGTC CCCCGAGGGC chr19:58873352-58873432 7 9.02e-06 AGGTCC TTCCTGTC GGCCTCACTG chr2:24715013-24715093 72 9.02e-06 ACTGGACATG TTCCTGTC G chr22:36783092-36783172 60 9.02e-06 GGGGTGGCCC TTCCTGTC TCGCGCCCGG chr7:30324717-30324797 16 1.79e-05 CCGGGACCCC TTCCTCTC CGCGTCTCCT chr20:3154579-3154659 14 1.79e-05 CCGAGCCCCA TTCCTCTC CCGCGCCAGC chr20:307327-307407 1 2.21e-05 . TTTCTGTC CAGGCTGCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCCTGTC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:46367125-46367205 9e-06 42_[+3]_30 chr2:25474787-25474867 9e-06 21_[+3]_51 chr19:58873352-58873432 9e-06 6_[+3]_66 chr2:24715013-24715093 9e-06 71_[+3]_1 chr22:36783092-36783172 9e-06 59_[+3]_13 chr7:30324717-30324797 1.8e-05 15_[+3]_57 chr20:3154579-3154659 1.8e-05 13_[+3]_59 chr20:307327-307407 2.2e-05 [+3]_72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCCTGTC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTCCTGTC width=8 seqs=8 chr19:46367125-46367205 ( 43) TTCCTGTC 1 chr2:25474787-25474867 ( 22) TTCCTGTC 1 chr19:58873352-58873432 ( 7) TTCCTGTC 1 chr2:24715013-24715093 ( 72) TTCCTGTC 1 chr22:36783092-36783172 ( 60) TTCCTGTC 1 chr7:30324717-30324797 ( 16) TTCCTCTC 1 chr20:3154579-3154659 ( 14) TTCCTCTC 1 chr20:307327-307407 ( 1) TTTCTGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCCTGTC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.3065 E= 1.5e+004 -965 -965 -965 264 -965 -965 -965 264 -965 136 -965 -36 -965 155 -965 -965 -965 -965 -965 264 -965 -45 111 -965 -965 -965 -965 264 -965 155 -965 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCCTGTC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 1.5e+004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.875000 0.000000 0.125000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCCTGTC MEME-3 regular expression -------------------------------------------------------------------------------- TTCCT[GC]TC -------------------------------------------------------------------------------- Time 12.66 secs. ******************************************************************************** ******************************************************************************** MOTIF TTYTKCTT MEME-4 width = 8 sites = 13 llr = 126 E-value = 2.6e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTYTKCTT MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::5:1822 probability G :1::3::: matrix T a95a6288 bits 2.7 * * 2.4 * * 2.2 ** * 1.9 ** * * Relative 1.6 ** * ** Entropy 1.4 ** * ** (14.0 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TTCTTCTT consensus T GTC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYTKCTT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:10329823-10329903 48 9.15e-07 ttttttcatt tttttctt cacttttctc chr6:105401035-105401115 48 9.15e-07 TCGCCGACGT TTTTTCTT GATCCTCCGA chr3:50310736-50310816 58 3.30e-06 CAAAATCTAC TTCTTCTT TCGTGAGACG chr4:53525884-53525964 30 9.08e-06 CCGTCCTCGC TTTTTCCT CGTCGCCTTC chr7:103630430-103630510 43 9.08e-06 GTGTGCCCTG TTTTTCCT GGGAGGATGC chr15:62360720-62360800 62 1.33e-05 TGACCAGGAC TTCTGCTT CGACGGCCTC chr4:183727848-183727928 39 1.33e-05 AAGCGGAGAC TTCTGCTT CAGCACCGCC chr16:49192108-49192188 71 2.23e-05 CTGTCCAGGG TTCTGTTT AG chr5:180644386-180644466 59 3.13e-05 CCCCTCCGGC TTCTTCTC TGAAGCCTTT chr8:37558038-37558118 18 3.13e-05 GGCACCTTGG TTCTTCTC ATCTTCTGAA chr19:39998052-39998132 8 4.45e-05 CGCTACC TTTTGCCT CCGGCTCTGG chr17:44344638-44344718 35 4.55e-05 GTTCCCAAAC TGTTTTTT GGAAGCAGCG chr7:8009468-8009548 51 5.16e-05 CTCTTCGGGC TTCTCTTT GCTAGTGCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYTKCTT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:10329823-10329903 9.2e-07 47_[+4]_25 chr6:105401035-105401115 9.2e-07 47_[+4]_25 chr3:50310736-50310816 3.3e-06 57_[+4]_15 chr4:53525884-53525964 9.1e-06 29_[+4]_43 chr7:103630430-103630510 9.1e-06 42_[+4]_30 chr15:62360720-62360800 1.3e-05 61_[+4]_11 chr4:183727848-183727928 1.3e-05 38_[+4]_34 chr16:49192108-49192188 2.2e-05 70_[+4]_2 chr5:180644386-180644466 3.1e-05 58_[+4]_14 chr8:37558038-37558118 3.1e-05 17_[+4]_55 chr19:39998052-39998132 4.5e-05 7_[+4]_65 chr17:44344638-44344718 4.5e-05 34_[+4]_38 chr7:8009468-8009548 5.2e-05 50_[+4]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYTKCTT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTYTKCTT width=8 seqs=13 chr11:10329823-10329903 ( 48) TTTTTCTT 1 chr6:105401035-105401115 ( 48) TTTTTCTT 1 chr3:50310736-50310816 ( 58) TTCTTCTT 1 chr4:53525884-53525964 ( 30) TTTTTCCT 1 chr7:103630430-103630510 ( 43) TTTTTCCT 1 chr15:62360720-62360800 ( 62) TTCTGCTT 1 chr4:183727848-183727928 ( 39) TTCTGCTT 1 chr16:49192108-49192188 ( 71) TTCTGTTT 1 chr5:180644386-180644466 ( 59) TTCTTCTC 1 chr8:37558038-37558118 ( 18) TTCTTCTC 1 chr19:39998052-39998132 ( 8) TTTTGCCT 1 chr17:44344638-44344718 ( 35) TGTTTTTT 1 chr7:8009468-8009548 ( 51) TTCTCTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYTKCTT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.6191 E= 2.6e+004 -1035 -1035 -1035 264 -1035 -1035 -217 253 -1035 66 -1035 153 -1035 -1035 -1035 264 -1035 -214 -17 194 -1035 117 -1035 53 -1035 -56 -1035 226 -1035 -115 -1035 240 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYTKCTT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 2.6e+004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.076923 0.923077 0.000000 0.538462 0.000000 0.461538 0.000000 0.000000 0.000000 1.000000 0.000000 0.076923 0.307692 0.615385 0.000000 0.769231 0.000000 0.230769 0.000000 0.230769 0.000000 0.769231 0.000000 0.153846 0.000000 0.846154 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYTKCTT MEME-4 regular expression -------------------------------------------------------------------------------- TT[CT]T[TG][CT][TC]T -------------------------------------------------------------------------------- Time 16.45 secs. ******************************************************************************** ******************************************************************************** MOTIF SAGRGMAG MEME-5 width = 8 sites = 28 llr = 235 E-value = 6.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif SAGRGMAG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a:525a: pos.-specific C 5::::5:: probability G 5:a58::a matrix T :::::::: bits 2.7 * * 2.4 * * 2.2 * * 1.9 * * Relative 1.6 ** * Entropy 1.4 ** ** (12.1 bits) 1.1 ******* 0.8 ******* 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CAGGGAAG consensus G AAC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGRGMAG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr15:85525703-85525783 45 7.61e-06 GGGCAGCGTT CAGAGAAG GACCGACCCA chr6:168226147-168226227 67 1.53e-05 CGATGTGTCT GAGAGAAG AGGCGT chr19:12946120-12946200 46 1.53e-05 AGTGGGTTCC GAGAGAAG GGAGGCAGCT chr20:36255538-36255618 73 1.87e-05 ACGTCTTCTG CAGAAAAG chr19:18335749-18335829 23 1.87e-05 CCAAGGGTTC CAGAAAAG CGCGTCTGTG chr17:8093104-8093184 37 3.94e-05 GCCGGGAGGA CAGGGAAG GTTCGTGCTC chr17:79918360-79918440 36 3.94e-05 CCGCGGCCCG CAGGGAAG GTCCAGCCGG chr19:41035050-41035130 36 7.42e-05 CTTTAGTCGG GAGGGAAG TGCTTCTCGG chr22:22652171-22652251 20 7.42e-05 aaggtctgtg cagagcag aacgcagctc chr20:10654854-10654934 31 7.42e-05 TTCGGGCCAG GAGGGAAG GGAGAGTGCG chr6:82462075-82462155 2 7.42e-05 G CAGAGCAG CCCCGCACCA chr20:33297128-33297208 61 7.42e-05 CGCCCGCCTC CAGAGCAG TCCCCTGGAG chr10:103990928-10399100 64 7.42e-05 GACGGGGTGG GAGGGAAG GAGCGCACG chr7:103630430-103630510 63 7.42e-05 GAGGATGCGT GAGGGAAG GAGAGGGGCG chr2:37552333-37552413 23 7.42e-05 GTAAGGCGTC CAGAGCAG AGAGCTGCTT chr6:109776745-109776825 50 7.42e-05 GGGCTGGGCT GAGGGAAG ACCTGCCTGA chr9:94712110-94712190 56 9.15e-05 CCGGGACACT GAGAGCAG AAGCGCGGCG chr8:95960917-95960997 53 9.15e-05 TCCAACGGCC GAgagcag gcggaggagg chr9:128845121-128845201 3 1.14e-04 AG GAGGAAAG CCCCATGCAG chr1:39957361-39957441 64 1.14e-04 TCCCAGCCCT CAGAACAG CCCCGGCCT chr15:70393009-70393089 51 1.61e-04 AGCGCTCCAG CAGGGCAG ACCCACGTCG chr16:730188-730268 31 1.61e-04 GAGACCTCAG CAGGGCAG GCCAGGGCCT chr15:40575127-40575207 55 1.61e-04 CACCCGCACC CAGGGCAG CCCCCGCTCC chr17:73874519-73874599 40 1.61e-04 GTTGTGGCCG CAGGGCAG CGTCACCGGC chr1:28286522-28286602 7 2.01e-04 GGCCCT GAGGGCAG GCCCCAACCG chr1:27339171-27339251 44 2.35e-04 TTAAGGGGAG GAGGACAG GGAGAGCGGC chr20:35169944-35170024 47 2.35e-04 CGGGGGTCTT GAGGACAG GCCTAACGGC chr21:34143529-34143609 30 2.38e-04 GCTGGGCGTC CAGAGAAT ACGGGGGCGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGRGMAG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:85525703-85525783 7.6e-06 44_[+5]_28 chr6:168226147-168226227 1.5e-05 66_[+5]_6 chr19:12946120-12946200 1.5e-05 45_[+5]_27 chr20:36255538-36255618 1.9e-05 72_[+5] chr19:18335749-18335829 1.9e-05 22_[+5]_50 chr17:8093104-8093184 3.9e-05 36_[+5]_36 chr17:79918360-79918440 3.9e-05 35_[+5]_37 chr19:41035050-41035130 7.4e-05 35_[+5]_37 chr22:22652171-22652251 7.4e-05 19_[+5]_53 chr20:10654854-10654934 7.4e-05 30_[+5]_42 chr6:82462075-82462155 7.4e-05 1_[+5]_71 chr20:33297128-33297208 7.4e-05 60_[+5]_12 chr10:103990928-10399100 7.4e-05 63_[+5]_9 chr7:103630430-103630510 7.4e-05 62_[+5]_10 chr2:37552333-37552413 7.4e-05 22_[+5]_50 chr6:109776745-109776825 7.4e-05 49_[+5]_23 chr9:94712110-94712190 9.2e-05 55_[+5]_17 chr8:95960917-95960997 9.2e-05 52_[+5]_20 chr9:128845121-128845201 0.00011 2_[+5]_70 chr1:39957361-39957441 0.00011 63_[+5]_9 chr15:70393009-70393089 0.00016 50_[+5]_22 chr16:730188-730268 0.00016 30_[+5]_42 chr15:40575127-40575207 0.00016 54_[+5]_18 chr17:73874519-73874599 0.00016 39_[+5]_33 chr1:28286522-28286602 0.0002 6_[+5]_66 chr1:27339171-27339251 0.00023 43_[+5]_29 chr20:35169944-35170024 0.00023 46_[+5]_26 chr21:34143529-34143609 0.00024 29_[+5]_43 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGRGMAG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SAGRGMAG width=8 seqs=28 chr15:85525703-85525783 ( 45) CAGAGAAG 1 chr6:168226147-168226227 ( 67) GAGAGAAG 1 chr19:12946120-12946200 ( 46) GAGAGAAG 1 chr20:36255538-36255618 ( 73) CAGAAAAG 1 chr19:18335749-18335829 ( 23) CAGAAAAG 1 chr17:8093104-8093184 ( 37) CAGGGAAG 1 chr17:79918360-79918440 ( 36) CAGGGAAG 1 chr19:41035050-41035130 ( 36) GAGGGAAG 1 chr22:22652171-22652251 ( 20) CAGAGCAG 1 chr20:10654854-10654934 ( 31) GAGGGAAG 1 chr6:82462075-82462155 ( 2) CAGAGCAG 1 chr20:33297128-33297208 ( 61) CAGAGCAG 1 chr10:103990928-10399100 ( 64) GAGGGAAG 1 chr7:103630430-103630510 ( 63) GAGGGAAG 1 chr2:37552333-37552413 ( 23) CAGAGCAG 1 chr6:109776745-109776825 ( 50) GAGGGAAG 1 chr9:94712110-94712190 ( 56) GAGAGCAG 1 chr8:95960917-95960997 ( 53) GAGAGCAG 1 chr9:128845121-128845201 ( 3) GAGGAAAG 1 chr1:39957361-39957441 ( 64) CAGAACAG 1 chr15:70393009-70393089 ( 51) CAGGGCAG 1 chr16:730188-730268 ( 31) CAGGGCAG 1 chr15:40575127-40575207 ( 55) CAGGGCAG 1 chr17:73874519-73874599 ( 40) CAGGGCAG 1 chr1:28286522-28286602 ( 7) GAGGGCAG 1 chr1:27339171-27339251 ( 44) GAGGACAG 1 chr20:35169944-35170024 ( 47) GAGGACAG 1 chr21:34143529-34143609 ( 30) CAGAGAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGRGMAG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.0174 E= 6.5e+003 -1145 65 42 -1145 271 -1145 -1145 -1145 -1145 -1145 153 -1145 161 -1145 63 -1145 49 -1145 118 -1145 171 55 -1145 -1145 271 -1145 -1145 -1145 -1145 -1145 148 -216 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGRGMAG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 6.5e+003 0.000000 0.535714 0.464286 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.464286 0.000000 0.535714 0.000000 0.214286 0.000000 0.785714 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.964286 0.035714 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAGRGMAG MEME-5 regular expression -------------------------------------------------------------------------------- [CG]AG[GA][GA][AC]AG -------------------------------------------------------------------------------- Time 20.21 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:93170315-93170395 9.56e-01 80 chr19:50831814-50831894 2.98e-01 80 chr19:12946120-12946200 2.90e-04 45_[+5(1.53e-05)]_27 chr12:100593411-10059349 3.76e-01 80 chr22:36783092-36783172 8.79e-03 59_[+3(9.02e-06)]_13 chr20:44803232-44803312 7.96e-01 80 chr13:41240415-41240495 7.82e-01 80 chr6:109776745-109776825 5.05e-03 49_[+5(7.42e-05)]_23 chr1:171810787-171810867 9.24e-01 80 chr20:43922351-43922431 6.93e-01 80 chr7:66206071-66206151 2.73e-01 80 chr3:152880459-152880539 3.75e-01 80 chr19:39998052-39998132 2.10e-01 7_[+4(4.45e-05)]_65 chr2:158454026-158454106 5.79e-01 80 chr17:79918360-79918440 3.19e-03 35_[+5(3.94e-05)]_37 chr11:34380134-34380214 1.99e-02 80 chr22:44319761-44319841 7.07e-01 80 chr20:3154579-3154659 5.40e-02 13_[+3(1.79e-05)]_59 chr12:111284753-11128483 9.22e-01 80 chr19:42891409-42891489 7.52e-01 80 chr1:21043975-21044055 6.98e-01 80 chr14:73712826-73712906 8.25e-01 80 chr19:39226911-39226991 9.68e-01 80 chr11:65101593-65101673 2.51e-01 80 chr20:23285399-23285479 9.84e-01 80 chr16:127466-127546 8.64e-01 80 chr2:37552333-37552413 2.31e-02 22_[+5(7.42e-05)]_50 chr19:5805742-5805822 2.55e-01 80 chr17:73874519-73874599 8.13e-02 80 chr19:12936594-12936674 5.24e-01 80 chr18:77748575-77748655 6.95e-01 80 chr3:48885099-48885179 4.50e-01 80 chr11:57227984-57228064 1.76e-01 80 chr19:13209262-13209342 1.90e-01 80 chr17:48227077-48227157 5.62e-01 80 chr18:12307953-12308033 1.27e-01 80 chr3:169755699-169755779 4.68e-01 80 chr14:50101449-50101529 5.27e-01 80 chr6:105401035-105401115 1.06e-03 47_[+4(9.15e-07)]_25 chr12:99039165-99039245 6.50e-01 80 chr7:92157506-92157586 8.98e-01 80 chr7:103630430-103630510 5.57e-05 42_[+4(9.08e-06)]_12_[+5(7.42e-05)]_\ 10 chr19:58858793-58858873 8.98e-01 80 chr17:8093104-8093184 7.54e-03 36_[+5(3.94e-05)]_36 chr3:50264619-50264699 9.00e-01 80 chr13:99739357-99739437 9.02e-01 80 chr11:47207550-47207630 9.97e-01 80 chr15:82339667-82339747 4.15e-01 80 chr17:40440928-40441008 2.01e-01 80 chr8:104383859-104383939 9.96e-01 80 chr19:8274625-8274705 6.47e-01 80 chr8:38644926-38645006 7.54e-01 80 chr9:139742223-139742303 3.64e-01 80 chr17:42030458-42030538 9.40e-02 80 chr16:66959043-66959123 8.99e-01 80 chr15:40575127-40575207 2.65e-01 80 chr8:48649805-48649885 7.24e-01 80 chr1:33646743-33646823 7.76e-01 80 chr19:43967266-43967346 2.67e-01 80 chr3:195270563-195270643 5.38e-02 80 chrX:148622419-148622499 3.06e-03 16_[+3(4.76e-05)]_56 chr8:94929232-94929312 2.19e-01 80 chr5:54522892-54522972 3.18e-01 80 chr10:103990928-10399100 1.67e-04 27_[+2(1.29e-05)]_28_[+5(7.42e-05)]_\ 9 chr11:72852868-72852948 2.59e-01 80 chr20:33297128-33297208 1.07e-01 60_[+5(7.42e-05)]_12 chr16:2478825-2478905 3.05e-01 80 chr6:26550941-26551021 4.33e-01 80 chr19:29218390-29218470 9.42e-01 80 chr20:44936003-44936083 1.03e-02 51_[+1(5.64e-05)]_21 chr1:39957361-39957441 1.94e-01 80 chr1:28286522-28286602 3.20e-01 80 chr9:114245391-114245471 9.36e-01 80 chr9:103235898-103235978 9.02e-02 7_[+4(8.83e-05)]_65 chr4:53525884-53525964 5.80e-02 29_[+4(9.08e-06)]_43 chr16:1463837-1463917 7.68e-01 80 chr20:35169944-35170024 4.02e-02 80 chr21:35987068-35987148 6.95e-01 80 chr9:139872690-139872770 2.79e-01 80 chr3:23244792-23244872 1.33e-01 80 chr11:407540-407620 2.69e-01 80 chr6:105850588-105850668 8.44e-02 [+1(5.64e-05)]_72 chr16:3079543-3079623 5.56e-01 80 chr7:152133493-152133573 7.32e-01 80 chr8:2480993-2481073 1.76e-01 80 chr12:40499251-40499331 6.95e-01 80 chr14:102829592-10282967 2.80e-02 35_[+1(4.26e-06)]_37 chr7:30324717-30324797 5.47e-02 15_[+3(1.79e-05)]_57 chr11:100998643-10099872 9.12e-01 80 chr14:76448677-76448757 8.99e-01 80 chr17:79917328-79917408 9.91e-01 80 chr11:66512520-66512600 5.30e-01 80 chr7:8009468-8009548 1.39e-02 50_[+4(5.16e-05)]_22 chr19:44037896-44037976 3.37e-01 80 chr2:175201250-175201330 5.21e-01 80 chr1:71512828-71512908 4.35e-01 80 chr2:46524113-46524193 5.23e-01 80 chr3:112280515-112280595 9.63e-01 80 chr8:95960917-95960997 3.73e-01 52_[+5(9.15e-05)]_20 chr7:50518078-50518158 1.00e+00 80 chr1:27339171-27339251 1.83e-01 80 chrX:135333304-135333384 1.19e-01 80 chr1:40105532-40105612 5.90e-01 80 chr2:10091878-10091958 2.54e-01 80 chr13:28024321-28024401 9.92e-02 80 chr7:66147362-66147442 1.98e-01 80 chr3:80819710-80819790 5.61e-01 80 chr1:1270397-1270477 9.99e-01 80 chr6:157695659-157695739 2.80e-04 58_[+1(1.31e-06)]_14 chr19:15666920-15667000 6.36e-02 80 chr20:56964214-56964294 5.82e-01 80 chr7:128865221-128865301 1.71e-01 80 chr5:151304236-151304316 6.29e-01 80 chr17:34091648-34091728 7.20e-02 80 chr6:82462075-82462155 1.13e-02 1_[+5(7.42e-05)]_71 chr10:33246579-33246659 2.07e-01 80 chr16:730188-730268 8.44e-02 80 chr2:24715013-24715093 3.55e-03 71_[+3(9.02e-06)]_1 chr1:16543677-16543757 9.79e-01 80 chr1:9749263-9749343 3.53e-01 80 chr13:48878004-48878084 2.78e-01 80 chr5:180596839-180596919 8.60e-01 80 chr1:63782689-63782769 2.38e-01 80 chr22:29999761-29999841 3.22e-01 80 chr11:14913478-14913558 7.93e-02 80 chr3:50310736-50310816 3.39e-04 57_[+4(3.30e-06)]_15 chr19:58873352-58873432 1.54e-02 6_[+3(9.02e-06)]_66 chrX:134655393-134655473 2.86e-01 80 chr19:55865870-55865950 7.03e-01 80 chr10:92617255-92617335 8.43e-01 80 chr2:239148986-239149066 1.83e-01 80 chr19:57702711-57702791 4.43e-04 18_[+2(9.90e-06)]_54 chr1:6500293-6500373 1.56e-02 80 chr16:29823683-29823763 9.71e-01 80 chr11:9286366-9286446 3.47e-02 80 chr1:94884095-94884175 3.97e-01 80 chr15:78369635-78369715 9.93e-01 80 chr4:183727848-183727928 2.84e-03 38_[+4(1.33e-05)]_34 chr2:242673744-242673824 4.64e-02 80 chr19:41110383-41110463 3.40e-04 71_[+2(7.21e-07)]_1 chr12:50100927-50101007 9.93e-01 80 chr14:50065319-50065399 4.89e-01 80 chr15:62360720-62360800 4.97e-02 61_[+4(1.33e-05)]_11 chr19:18335749-18335829 2.28e-03 22_[+5(1.87e-05)]_50 chr11:2950896-2950976 8.87e-01 80 chr11:9780195-9780275 7.91e-01 80 chr17:72733101-72733181 4.50e-01 80 chr7:98972026-98972106 9.97e-01 80 chr1:246670394-246670474 7.12e-01 80 chr9:80850920-80851000 9.62e-01 80 chr2:64371348-64371428 5.86e-01 80 chrX:149106752-149106832 9.16e-01 80 chr1:27930877-27930957 3.39e-02 80 chr9:133556371-133556451 9.54e-01 80 chrX:133507254-133507334 9.49e-01 80 chr17:44344638-44344718 4.30e-02 34_[+4(4.55e-05)]_38 chr16:58060250-58060330 9.99e-01 80 chr20:307327-307407 1.50e-02 [+3(2.21e-05)]_72 chr2:43864666-43864746 9.16e-01 80 chr19:41119465-41119545 1.79e-01 80 chr21:34143529-34143609 1.77e-01 80 chr19:38746868-38746948 7.50e-01 80 chr15:70393009-70393089 1.97e-01 80 chr19:10444553-10444633 3.96e-02 80 chr20:10654854-10654934 9.14e-02 30_[+5(7.42e-05)]_42 chr9:128509802-128509882 3.28e-01 80 chr7:35839911-35839991 4.17e-01 80 chr11:726625-726705 1.16e-04 55_[+2(4.69e-06)]_17 chr22:25844008-25844088 2.01e-01 80 chr12:2861942-2862022 4.70e-01 80 chr1:27986569-27986649 9.80e-01 80 chr18:60384077-60384157 4.58e-01 80 chr6:2766142-2766222 7.24e-01 80 chr19:57149512-57149592 7.05e-01 80 chr8:142726263-142726343 6.81e-01 80 chr5:150036043-150036123 8.99e-01 80 chr16:49192108-49192188 1.37e-03 70_[+4(2.23e-05)]_2 chr6:170101649-170101729 1.28e-01 80 chr9:125703413-125703493 3.97e-01 80 chr19:55880660-55880740 8.25e-01 80 chr19:50528363-50528443 2.95e-01 80 chr11:10329823-10329903 3.26e-04 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because requested number of motifs (5) found. ******************************************************************************** CPU: c22n06.farnam.hpc.yale.internal ********************************************************************************