******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/NCOA4.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr11:64765775-64765855 1.0000 80 chr19:21756425-21756505 1.0000 80 chr10:49683144-49683224 1.0000 80 chr21:9846771-9846851 1.0000 80 chr2:176035841-176035921 1.0000 80 chr15:21921760-21921840 1.0000 80 chr5:121485568-121485648 1.0000 80 chr2:15702971-15703051 1.0000 80 chr6:158313059-158313139 1.0000 80 chr19:45754172-45754252 1.0000 80 chr22:20764957-20765037 1.0000 80 chr19:2568195-2568275 1.0000 80 chr1:142829683-142829763 1.0000 80 chr7:135664063-135664143 1.0000 80 chr19:5358370-5358450 1.0000 80 chr17:32199314-32199394 1.0000 80 chr19:45249108-45249188 1.0000 80 chr18:20147927-20148007 1.0000 80 chr22:19077890-19077970 1.0000 80 chr3:24303304-24303384 1.0000 80 chr17:38601426-38601506 1.0000 80 chr6:161628734-161628814 1.0000 80 chr2:9457866-9457946 1.0000 80 chr22:17088508-17088588 1.0000 80 chr22:22806745-22806825 1.0000 80 chr1:166270016-166270096 1.0000 80 chr9:94582050-94582130 1.0000 80 chr4:144269578-144269658 1.0000 80 chr15:63413862-63413942 1.0000 80 chr7:148394031-148394111 1.0000 80 chr9:100735208-100735288 1.0000 80 chr12:56325246-56325326 1.0000 80 chr2:61582793-61582873 1.0000 80 chr7:73669263-73669343 1.0000 80 chr9:130976559-130976639 1.0000 80 chr1:71505811-71505891 1.0000 80 chr20:49383937-49384017 1.0000 80 chr20:61376747-61376827 1.0000 80 chr3:195919657-195919737 1.0000 80 chr1:39698118-39698198 1.0000 80 chr1:38990049-38990129 1.0000 80 chr22:20763843-20763923 1.0000 80 chr8:98749006-98749086 1.0000 80 chr3:48341448-48341528 1.0000 80 chr2:80597290-80597370 1.0000 80 chr3:5034373-5034453 1.0000 80 chr2:25020685-25020765 1.0000 80 chr6:44097589-44097669 1.0000 80 chr19:4228935-4229015 1.0000 80 chr22:22640205-22640285 1.0000 80 chr16:81659864-81659944 1.0000 80 chr12:91960664-91960744 1.0000 80 chr6:2969962-2970042 1.0000 80 chr1:181068989-181069069 1.0000 80 chr19:48606806-48606886 1.0000 80 chr22:17015076-17015156 1.0000 80 chr19:2362706-2362786 1.0000 80 chr22:22505011-22505091 1.0000 80 chr7:99718127-99718207 1.0000 80 chr22:23363893-23363973 1.0000 80 chr1:23706904-23706984 1.0000 80 chr20:562238-562318 1.0000 80 chr3:14446474-14446554 1.0000 80 chr19:54448876-54448956 1.0000 80 chr20:55989902-55989982 1.0000 80 chr16:27214792-27214872 1.0000 80 chr22:20836908-20836988 1.0000 80 chr15:31196011-31196091 1.0000 80 chr1:45240172-45240252 1.0000 80 chr11:4006568-4006648 1.0000 80 chr19:44282273-44282353 1.0000 80 chr2:131095553-131095633 1.0000 80 chr11:35061958-35062038 1.0000 80 chr22:22928738-22928818 1.0000 80 chr10:63545664-63545744 1.0000 80 chr2:84198393-84198473 1.0000 80 chr11:45939720-45939800 1.0000 80 chr22:23614226-23614306 1.0000 80 chr19:41105633-41105713 1.0000 80 chr20:36788101-36788181 1.0000 80 chr22:19981699-19981779 1.0000 80 chr1:22476790-22476870 1.0000 80 chr19:11484977-11485057 1.0000 80 chr19:3154640-3154720 1.0000 80 chr17:58213111-58213191 1.0000 80 chr22:21307679-21307759 1.0000 80 chr1:91870371-91870451 1.0000 80 chr17:42667497-42667577 1.0000 80 chr20:4042842-4042922 1.0000 80 chr2:209130842-209130922 1.0000 80 chr11:64612695-64612775 1.0000 80 chr12:111834608-11183468 1.0000 80 chr17:34842345-34842425 1.0000 80 chr17:62340797-62340877 1.0000 80 chr21:44090654-44090734 1.0000 80 chr11:65283968-65284048 1.0000 80 chr6:31937888-31937968 1.0000 80 chr22:23282930-23283010 1.0000 80 chr22:26880232-26880312 1.0000 80 chr1:224031788-224031868 1.0000 80 chr7:143543731-143543811 1.0000 80 chr5:145214358-145214438 1.0000 80 chr22:22372846-22372926 1.0000 80 chr22:20895237-20895317 1.0000 80 chr22:20822914-20822994 1.0000 80 chr16:23568302-23568382 1.0000 80 chr20:49040139-49040219 1.0000 80 chr15:66796374-66796454 1.0000 80 chr18:8915061-8915141 1.0000 80 chr12:118460082-11846016 1.0000 80 chr6:157738718-157738798 1.0000 80 chr5:40796322-40796402 1.0000 80 chr7:98871392-98871472 1.0000 80 chr9:134378321-134378401 1.0000 80 chr4:38283448-38283528 1.0000 80 chr22:23270337-23270417 1.0000 80 chr1:142832071-142832151 1.0000 80 chr7:1015132-1015212 1.0000 80 chr8:3040686-3040766 1.0000 80 chr5:10708510-10708590 1.0000 80 chr22:23333319-23333399 1.0000 80 chr15:80444183-80444263 1.0000 80 chr19:3357472-3357552 1.0000 80 chr1:182227469-182227549 1.0000 80 chr19:18403993-18404073 1.0000 80 chr22:22912719-22912799 1.0000 80 chr22:35653400-35653480 1.0000 80 chr1:241878686-241878766 1.0000 80 chr1:1532024-1532104 1.0000 80 chr19:11379597-11379677 1.0000 80 chr2:233415827-233415907 1.0000 80 chr22:21282818-21282898 1.0000 80 chr11:1866235-1866315 1.0000 80 chr19:48175500-48175580 1.0000 80 chr22:22650510-22650590 1.0000 80 chr1:228632793-228632873 1.0000 80 chr18:3583326-3583406 1.0000 80 chr6:27445584-27445664 1.0000 80 chr22:22797414-22797494 1.0000 80 chr1:4067173-4067253 1.0000 80 chr22:21937461-21937541 1.0000 80 chr1:166643535-166643615 1.0000 80 chr6:44012284-44012364 1.0000 80 chr20:48876340-48876420 1.0000 80 chr7:127535736-127535816 1.0000 80 chr16:2255452-2255532 1.0000 80 chr1:23443146-23443226 1.0000 80 chr19:10655235-10655315 1.0000 80 chr3:39222787-39222867 1.0000 80 chr1:24307833-24307913 1.0000 80 chr17:56416052-56416132 1.0000 80 chr22:19897030-19897110 1.0000 80 chr19:17861964-17862044 1.0000 80 chr8:41653693-41653773 1.0000 80 chr1:40626649-40626729 1.0000 80 chr17:19091382-19091462 1.0000 80 chr17:1933391-1933471 1.0000 80 chr6:10464049-10464129 1.0000 80 chr6:147542995-147543075 1.0000 80 chr7:152126195-152126275 1.0000 80 chr19:14116266-14116346 1.0000 80 chr7:100178113-100178193 1.0000 80 chr22:21951213-21951293 1.0000 80 chr20:31162162-31162242 1.0000 80 chr6:3777261-3777341 1.0000 80 chr19:45945835-45945915 1.0000 80 chr22:19804139-19804219 1.0000 80 chr2:61244633-61244713 1.0000 80 chr1:8852107-8852187 1.0000 80 chr22:20823521-20823601 1.0000 80 chr3:70965646-70965726 1.0000 80 chr3:14451873-14451953 1.0000 80 chr3:32535354-32535434 1.0000 80 chr5:172192954-172193034 1.0000 80 chr10:82418356-82418436 1.0000 80 chr16:68279011-68279091 1.0000 80 chr17:80296579-80296659 1.0000 80 chr1:142834565-142834645 1.0000 80 chr17:41869121-41869201 1.0000 80 chr6:17962482-17962562 1.0000 80 chr20:48895942-48896022 1.0000 80 chr6:161459039-161459119 1.0000 80 chr10:75518580-75518660 1.0000 80 chr10:51488747-51488827 1.0000 80 chr12:118810846-11881092 1.0000 80 chr1:28692967-28693047 1.0000 80 chr10:47059239-47059319 1.0000 80 chr11:74816175-74816255 1.0000 80 chr9:137216365-137216445 1.0000 80 chr19:41283041-41283121 1.0000 80 chr5:180097357-180097437 1.0000 80 chr6:44093648-44093728 1.0000 80 chr19:8139621-8139701 1.0000 80 chr11:46615591-46615671 1.0000 80 chr19:13093535-13093615 1.0000 80 chr19:10542044-10542124 1.0000 80 chr11:5256719-5256799 1.0000 80 chr1:228538325-228538405 1.0000 80 chr1:156739138-156739218 1.0000 80 chr8:99819994-99820074 1.0000 80 chr22:22927398-22927478 1.0000 80 chr19:11676405-11676485 1.0000 80 chr16:81610990-81611070 1.0000 80 chr15:41408526-41408606 1.0000 80 chr7:73140584-73140664 1.0000 80 chr19:18451154-18451234 1.0000 80 chr14:31889924-31890004 1.0000 80 chr12:104882274-10488235 1.0000 80 chr11:10771253-10771333 1.0000 80 chrX:135851138-135851218 1.0000 80 chr19:1701025-1701105 1.0000 80 chr7:106417182-106417262 1.0000 80 chr7:120688530-120688610 1.0000 80 chr19:11646644-11646724 1.0000 80 chr1:234720592-234720672 1.0000 80 chr1:4067769-4067849 1.0000 80 chr1:212937805-212937885 1.0000 80 chr1:92270006-92270086 1.0000 80 chr7:77561828-77561908 1.0000 80 chr9:117160438-117160518 1.0000 80 chr8:30013865-30013945 1.0000 80 chr20:16710585-16710665 1.0000 80 chr1:142817067-142817147 1.0000 80 chr12:121021688-12102176 1.0000 80 chr5:153125551-153125631 1.0000 80 chr22:18359822-18359902 1.0000 80 chr2:10611253-10611333 1.0000 80 chr1:207097620-207097700 1.0000 80 chr1:16471248-16471328 1.0000 80 chr1:109740248-109740328 1.0000 80 chr1:156663324-156663404 1.0000 80 chr19:1668225-1668305 1.0000 80 chr15:27597127-27597207 1.0000 80 chr22:20776628-20776708 1.0000 80 chr14:23751806-23751886 1.0000 80 chr7:73081762-73081842 1.0000 80 chr12:125360936-12536101 1.0000 80 chr1:31249117-31249197 1.0000 80 chr6:11491493-11491573 1.0000 80 chr1:2473407-2473487 1.0000 80 chr6:37788813-37788893 1.0000 80 chr6:161795272-161795352 1.0000 80 chr1:1832493-1832573 1.0000 80 chr17:29635584-29635664 1.0000 80 chr19:3706123-3706203 1.0000 80 chr2:44396827-44396907 1.0000 80 chr3:47018486-47018566 1.0000 80 chr3:5056938-5057018 1.0000 80 chr3:53290314-53290394 1.0000 80 chr10:75011844-75011924 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_NCOA4/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/NCOA4.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.268 C 0.225 G 0.245 T 0.262 Background letter frequencies (from file dataset with add-one prior applied): A 0.268 C 0.225 G 0.245 T 0.262 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TSTKTSTK MEME-1 width = 8 sites = 69 llr = 514 E-value = 9.6e-013 ******************************************************************************** -------------------------------------------------------------------------------- Motif TSTKTSTK MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :6:2:5:1 probability G :4:5:4:6 matrix T a:a3a2a4 bits 2.2 1.9 * * * * 1.7 * * * * 1.5 * * * * Relative 1.3 * * * * Entropy 1.1 *** * * (10.7 bits) 0.9 *** * * 0.6 *** **** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTGTCTG consensus G T G T sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSTKTSTK MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:156663324-156663404 36 1.43e-05 attctccatc tctgtctg tgtctctcat chr1:92270006-92270086 68 1.43e-05 CCTTCCGCAA TCTGTCTG CACAA chr19:1701025-1701105 55 1.43e-05 tctgcctctc tctgtctg tgtctctgtc chr11:10771253-10771333 27 1.43e-05 tgccgtcccc tctgtctg gtacacattc chr10:82418356-82418436 11 1.43e-05 tgtctctgtg tctgtctg tgtgagtgtc chr1:39698118-39698198 54 1.43e-05 cttttcttcc tctgtctg actcttccat chr12:104882274-10488235 26 2.99e-05 tgtgtgtatc tctgtgtg tatatgtgtg chr7:73140584-73140664 51 2.99e-05 tctgtgtatg tctgtgtg tgtatgtgtg chr9:94582050-94582130 5 2.99e-05 gtgt tctgtgtg tatgtctgtg chr5:121485568-121485648 11 2.99e-05 CAGAATTGAC TCtgtgtg tgtgtgtgtg chr22:21937461-21937541 40 4.52e-05 CTCTAGCAGT TCTGTCTT CCCCCGTCTT chr18:3583326-3583406 67 4.52e-05 cctcctcctc tctgtctt ccttct chr1:182227469-182227549 54 4.52e-05 tccCTCTCTT TCTGTCTT TCCATTTCTT chr11:4006568-4006648 71 6.08e-05 tgcatttaga tgtgtctg tg chr16:81659864-81659944 71 6.08e-05 AGGTGACTGg tgtgtctg tg chr19:1668225-1668305 52 8.93e-05 tctttctgtc tctctctg cctgtctctc chr1:228538325-228538405 56 8.93e-05 tttatctctg tctctctg tttctccatc chr2:61244633-61244713 37 8.93e-05 GAAAGGCAGC TCTTTCTG GGGCAAATAC chr6:147542995-147543075 53 8.93e-05 tttgttgttg tctctctg ttctcagata chr19:41105633-41105713 35 8.93e-05 TAtttctgtc tctttctg tttctttcta chr19:4228935-4229015 22 8.93e-05 ttcatctgtg tctctctg tctctgtctc chr8:98749006-98749086 26 8.93e-05 tctctttgtc tctctctg tttattgctg chr19:45754172-45754252 14 8.93e-05 tgcgtctctc tctctctg tcatctggct chr17:38601426-38601506 22 1.06e-04 TCCACCTTAT tctgtgtt tctgtttcag chr6:161795272-161795352 47 1.23e-04 tgtatgtatg tgtgtgtg gtatatgtgg chr6:11491493-11491573 40 1.23e-04 tgtatgtggt tgtgtgtg tgGGTATATA chr22:20776628-20776708 61 1.23e-04 agcggtgggt tgtgtgtg tgtgttggag chr15:27597127-27597207 59 1.23e-04 gtgtatagtg tgtgtgtg tatggtatgt chr1:109740248-109740328 68 1.23e-04 TGAGAgtgtg tgtgtgtg tgtgt chr1:207097620-207097700 71 1.23e-04 tggctatgag tgtgtgtg ct chr5:180097357-180097437 51 1.23e-04 tgtatgtatg tgtgtgtg tatgtatatg chr10:75518580-75518660 44 1.23e-04 tgtgtgtgtg tgtgtgtg AGATGTTTgt chr6:3777261-3777341 61 1.23e-04 gggtgtgtgc tgtgtgtg ttggctgtgt chr19:2362706-2362786 31 1.23e-04 GTAACGTGGT TGTGTGTG TACTTGCATG chr6:2969962-2970042 49 1.23e-04 tatgtgtgtg tgtgtgtg tgttgtgtgt chr2:176035841-176035921 60 1.23e-04 gtggtgtgtg tgtgtgtg tgtgAGATGT chr22:26880232-26880312 62 1.54e-04 caatttataa tctctgtg cctcagtttt chr1:28692967-28693047 12 2.18e-04 cttcattttc tctctctt tctctctttt chr6:161459039-161459119 37 2.18e-04 tcctttcttt tctttctt ctgcctttct chr20:48876340-48876420 43 2.18e-04 tcctttcctc tcTCTCTT TCCACTGTTT chr6:27445584-27445664 60 2.18e-04 ctccttcctt tctctctt ctcctttctg chr15:80444183-80444263 38 2.18e-04 ccctcccttc tctctctT TCCACACACA chr4:38283448-38283528 73 2.18e-04 ctcctccttc tctttctt chr22:22928738-22928818 8 2.18e-04 tctatta tctgtttg atttatttct chr12:91960664-91960744 6 2.18e-04 tactt tctttctt cctccttccg chr6:37788813-37788893 50 2.49e-04 GAAGGAAGAT TGTTTCTG GTGAGGACAT chr19:13093535-13093615 17 2.49e-04 gcttttcctg tgtctctg tctctcccca chr20:48895942-48896022 51 2.49e-04 taagagtacc tgtctctg gccatgtgtg chr17:42667497-42667577 73 2.67e-04 agtgtgttca tgtgtgtt chr22:21307679-21307759 22 2.67e-04 CGGTCTTCAC TGTGTGTT TTAAaacaac chr12:111834608-11183468 7 3.00e-04 CCTCAT TCTttgtt cccattttac chr22:22806745-22806825 19 3.00e-04 TGAATTCCCT TCTTTGTT CTCTTTCCCT chr1:38990049-38990129 61 3.52e-04 catctgtata tctgtttt ggagaaatgt chr22:17088508-17088588 70 3.52e-04 AGGGATGAtt tctgtttt tgt chr22:21951213-21951293 62 4.03e-04 tttgtttttt tgtttctt tttgagacag chr22:22912719-22912799 15 4.49e-04 agcagaatga tctttttg caactggtgt chr22:20822914-20822994 51 4.85e-04 tttttttgtt tgtttgtt ttttgttttg chr1:45240172-45240252 39 4.85e-04 ttgttttgtt tgtttgtt ttgttttgag chr20:36788101-36788181 16 5.00e-04 tttgaagcct tctgtgtc cctgactcac chr17:29635584-29635664 68 5.54e-04 TCAAGGGTGT TCTTTTTT TTTTA chr22:22927398-22927478 23 5.54e-04 ctcttcctct tctttttt ctttcctCCT chr7:120688530-120688610 62 6.05e-04 cttctgttct tgtttttg ttttgttttt chr2:44396827-44396907 54 6.31e-04 TGTTAAATCG TCTTTCTC TGCTGTCTAT chr5:172192954-172193034 18 6.31e-04 tcagcccatg tctttctc acaaGtgagc chr4:144269578-144269658 25 6.31e-04 ttgacttttc tctctctc tcattctcca chr17:1933391-1933471 41 7.14e-04 CTTCCAGCGC TGTCTTTT TAGTACCACA chr3:39222787-39222867 29 7.14e-04 tcttggactt tgtttttt atttccttca chr1:22476790-22476870 36 7.14e-04 AACCCTGAGA TGtctttt ttcttttctt chr6:44093648-44093728 56 8.69e-04 ATAAAATCCT TGTTTTTC AGTAGCACGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSTKTSTK MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:156663324-156663404 1.4e-05 35_[+1]_37 chr1:92270006-92270086 1.4e-05 67_[+1]_5 chr19:1701025-1701105 1.4e-05 54_[+1]_18 chr11:10771253-10771333 1.4e-05 26_[+1]_46 chr10:82418356-82418436 1.4e-05 10_[+1]_62 chr1:39698118-39698198 1.4e-05 53_[+1]_19 chr12:104882274-10488235 3e-05 25_[+1]_47 chr7:73140584-73140664 3e-05 50_[+1]_22 chr9:94582050-94582130 3e-05 4_[+1]_68 chr5:121485568-121485648 3e-05 10_[+1]_62 chr22:21937461-21937541 4.5e-05 39_[+1]_33 chr18:3583326-3583406 4.5e-05 66_[+1]_6 chr1:182227469-182227549 4.5e-05 53_[+1]_19 chr11:4006568-4006648 6.1e-05 70_[+1]_2 chr16:81659864-81659944 6.1e-05 70_[+1]_2 chr19:1668225-1668305 8.9e-05 51_[+1]_21 chr1:228538325-228538405 8.9e-05 55_[+1]_17 chr2:61244633-61244713 8.9e-05 36_[+1]_36 chr6:147542995-147543075 8.9e-05 52_[+1]_20 chr19:41105633-41105713 8.9e-05 34_[+1]_38 chr19:4228935-4229015 8.9e-05 21_[+1]_51 chr8:98749006-98749086 8.9e-05 25_[+1]_47 chr19:45754172-45754252 8.9e-05 13_[+1]_59 chr17:38601426-38601506 0.00011 21_[+1]_51 chr6:161795272-161795352 0.00012 46_[+1]_26 chr6:11491493-11491573 0.00012 39_[+1]_33 chr22:20776628-20776708 0.00012 60_[+1]_12 chr15:27597127-27597207 0.00012 58_[+1]_14 chr1:109740248-109740328 0.00012 67_[+1]_5 chr1:207097620-207097700 0.00012 70_[+1]_2 chr5:180097357-180097437 0.00012 50_[+1]_22 chr10:75518580-75518660 0.00012 43_[+1]_29 chr6:3777261-3777341 0.00012 60_[+1]_12 chr19:2362706-2362786 0.00012 30_[+1]_42 chr6:2969962-2970042 0.00012 48_[+1]_24 chr2:176035841-176035921 0.00012 59_[+1]_13 chr22:26880232-26880312 0.00015 61_[+1]_11 chr1:28692967-28693047 0.00022 11_[+1]_61 chr6:161459039-161459119 0.00022 36_[+1]_36 chr20:48876340-48876420 0.00022 42_[+1]_30 chr6:27445584-27445664 0.00022 59_[+1]_13 chr15:80444183-80444263 0.00022 37_[+1]_35 chr4:38283448-38283528 0.00022 72_[+1] chr22:22928738-22928818 0.00022 7_[+1]_65 chr12:91960664-91960744 0.00022 5_[+1]_67 chr6:37788813-37788893 0.00025 49_[+1]_23 chr19:13093535-13093615 0.00025 16_[+1]_56 chr20:48895942-48896022 0.00025 50_[+1]_22 chr17:42667497-42667577 0.00027 72_[+1] chr22:21307679-21307759 0.00027 21_[+1]_51 chr12:111834608-11183468 0.0003 6_[+1]_66 chr22:22806745-22806825 0.0003 18_[+1]_54 chr1:38990049-38990129 0.00035 60_[+1]_12 chr22:17088508-17088588 0.00035 69_[+1]_3 chr22:21951213-21951293 0.0004 61_[+1]_11 chr22:22912719-22912799 0.00045 14_[+1]_58 chr22:20822914-20822994 0.00049 50_[+1]_22 chr1:45240172-45240252 0.00049 38_[+1]_34 chr20:36788101-36788181 0.0005 15_[+1]_57 chr17:29635584-29635664 0.00055 67_[+1]_5 chr22:22927398-22927478 0.00055 22_[+1]_50 chr7:120688530-120688610 0.0006 61_[+1]_11 chr2:44396827-44396907 0.00063 53_[+1]_19 chr5:172192954-172193034 0.00063 17_[+1]_55 chr4:144269578-144269658 0.00063 24_[+1]_48 chr17:1933391-1933471 0.00071 40_[+1]_32 chr3:39222787-39222867 0.00071 28_[+1]_44 chr1:22476790-22476870 0.00071 35_[+1]_37 chr6:44093648-44093728 0.00087 55_[+1]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSTKTSTK MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TSTKTSTK width=8 seqs=69 chr1:156663324-156663404 ( 36) TCTGTCTG 1 chr1:92270006-92270086 ( 68) TCTGTCTG 1 chr19:1701025-1701105 ( 55) TCTGTCTG 1 chr11:10771253-10771333 ( 27) TCTGTCTG 1 chr10:82418356-82418436 ( 11) TCTGTCTG 1 chr1:39698118-39698198 ( 54) TCTGTCTG 1 chr12:104882274-10488235 ( 26) TCTGTGTG 1 chr7:73140584-73140664 ( 51) TCTGTGTG 1 chr9:94582050-94582130 ( 5) TCTGTGTG 1 chr5:121485568-121485648 ( 11) TCTGTGTG 1 chr22:21937461-21937541 ( 40) TCTGTCTT 1 chr18:3583326-3583406 ( 67) TCTGTCTT 1 chr1:182227469-182227549 ( 54) TCTGTCTT 1 chr11:4006568-4006648 ( 71) TGTGTCTG 1 chr16:81659864-81659944 ( 71) TGTGTCTG 1 chr19:1668225-1668305 ( 52) TCTCTCTG 1 chr1:228538325-228538405 ( 56) TCTCTCTG 1 chr2:61244633-61244713 ( 37) TCTTTCTG 1 chr6:147542995-147543075 ( 53) TCTCTCTG 1 chr19:41105633-41105713 ( 35) TCTTTCTG 1 chr19:4228935-4229015 ( 22) TCTCTCTG 1 chr8:98749006-98749086 ( 26) TCTCTCTG 1 chr19:45754172-45754252 ( 14) TCTCTCTG 1 chr17:38601426-38601506 ( 22) TCTGTGTT 1 chr6:161795272-161795352 ( 47) TGTGTGTG 1 chr6:11491493-11491573 ( 40) TGTGTGTG 1 chr22:20776628-20776708 ( 61) TGTGTGTG 1 chr15:27597127-27597207 ( 59) TGTGTGTG 1 chr1:109740248-109740328 ( 68) TGTGTGTG 1 chr1:207097620-207097700 ( 71) TGTGTGTG 1 chr5:180097357-180097437 ( 51) TGTGTGTG 1 chr10:75518580-75518660 ( 44) TGTGTGTG 1 chr6:3777261-3777341 ( 61) TGTGTGTG 1 chr19:2362706-2362786 ( 31) TGTGTGTG 1 chr6:2969962-2970042 ( 49) TGTGTGTG 1 chr2:176035841-176035921 ( 60) TGTGTGTG 1 chr22:26880232-26880312 ( 62) TCTCTGTG 1 chr1:28692967-28693047 ( 12) TCTCTCTT 1 chr6:161459039-161459119 ( 37) TCTTTCTT 1 chr20:48876340-48876420 ( 43) TCTCTCTT 1 chr6:27445584-27445664 ( 60) TCTCTCTT 1 chr15:80444183-80444263 ( 38) TCTCTCTT 1 chr4:38283448-38283528 ( 73) TCTTTCTT 1 chr22:22928738-22928818 ( 8) TCTGTTTG 1 chr12:91960664-91960744 ( 6) TCTTTCTT 1 chr6:37788813-37788893 ( 50) TGTTTCTG 1 chr19:13093535-13093615 ( 17) TGTCTCTG 1 chr20:48895942-48896022 ( 51) TGTCTCTG 1 chr17:42667497-42667577 ( 73) TGTGTGTT 1 chr22:21307679-21307759 ( 22) TGTGTGTT 1 chr12:111834608-11183468 ( 7) TCTTTGTT 1 chr22:22806745-22806825 ( 19) TCTTTGTT 1 chr1:38990049-38990129 ( 61) TCTGTTTT 1 chr22:17088508-17088588 ( 70) TCTGTTTT 1 chr22:21951213-21951293 ( 62) TGTTTCTT 1 chr22:22912719-22912799 ( 15) TCTTTTTG 1 chr22:20822914-20822994 ( 51) TGTTTGTT 1 chr1:45240172-45240252 ( 39) TGTTTGTT 1 chr20:36788101-36788181 ( 16) TCTGTGTC 1 chr17:29635584-29635664 ( 68) TCTTTTTT 1 chr22:22927398-22927478 ( 23) TCTTTTTT 1 chr7:120688530-120688610 ( 62) TGTTTTTG 1 chr2:44396827-44396907 ( 54) TCTTTCTC 1 chr5:172192954-172193034 ( 18) TCTTTCTC 1 chr4:144269578-144269658 ( 25) TCTCTCTC 1 chr17:1933391-1933471 ( 41) TGTCTTTT 1 chr3:39222787-39222867 ( 29) TGTTTTTT 1 chr1:22476790-22476870 ( 36) TGTCTTTT 1 chr6:44093648-44093728 ( 56) TGTTTTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSTKTSTK MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.42015 E= 9.6e-013 -1275 -1275 -1275 193 -1275 143 68 -1275 -1275 -1275 -1275 193 -1275 4 101 7 -1275 -1275 -1275 193 -1275 109 56 -71 -1275 -1275 -1275 193 -1275 -163 121 47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSTKTSTK MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 69 E= 9.6e-013 0.000000 0.000000 0.000000 1.000000 0.000000 0.608696 0.391304 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.231884 0.492754 0.275362 0.000000 0.000000 0.000000 1.000000 0.000000 0.478261 0.362319 0.159420 0.000000 0.000000 0.000000 1.000000 0.000000 0.072464 0.565217 0.362319 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSTKTSTK MEME-1 regular expression -------------------------------------------------------------------------------- T[CG]T[GTC]T[CG]T[GT] -------------------------------------------------------------------------------- Time 5.08 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTGTGTG MEME-2 width = 8 sites = 25 llr = 238 E-value = 1.4e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1:1::::1 pos.-specific C :::::::: probability G :a:a1a:9 matrix T 9:9:9:a: bits 2.2 1.9 * * ** 1.7 * * ** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (13.7 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTGTGTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:161795272-161795352 26 1.70e-05 gtatgtgcag tgtgtgtg gtgtgtatgt chr6:11491493-11491573 19 1.70e-05 tgatgtgttg tgtgtgtg ctgtgtatgt chr22:20776628-20776708 21 1.70e-05 GGGCTGGCtg tgtgtgtg tcacagcgcg chr15:27597127-27597207 10 1.70e-05 tgtatggtg tgtgtgtg tatatatgat chr1:156663324-156663404 10 1.70e-05 gtcttacac tgtgtgtg tccctcgcat chr1:207097620-207097700 48 1.70e-05 ctgtggagtg tgtgtgtg gtgtgtggct chr12:104882274-10488235 58 1.70e-05 tgtgcgtgta tgtgtgtg tatgcgtgtg chr7:73140584-73140664 63 1.70e-05 tgtgtgtgta tgtgtgtg tgtctgtgta chr5:180097357-180097437 35 1.70e-05 tgtgtatgtg tgtgtgtg tatgtatgtg chr10:75518580-75518660 34 1.70e-05 GGTTTTtgtg tgtgtgtg tgtgtgtgtg chr10:82418356-82418436 35 1.70e-05 tgtctccata tgtgtgtg tctgtgtgtc chr6:3777261-3777341 17 1.70e-05 ttgggtgtac tgtgtgtg agttgtgtgt chr6:2969962-2970042 60 1.70e-05 gtgtgtgtgt tgtgtgtg tatgtgtTTA chr9:94582050-94582130 32 1.70e-05 gtctttgttc tgtgtgtg cctgtgtttg chr5:121485568-121485648 19 1.70e-05 ACTCtgtgtg tgtgtgtg tgtgtgtgtg chr2:176035841-176035921 45 1.70e-05 AAGGTAGGGg tgtgtgtg gtgtgtgtgt chr19:10542044-10542124 73 3.29e-05 tcatgccttc tgtgggtg chr7:148394031-148394111 68 3.29e-05 GAGAGGGTGG TGTGGGTG GACCA chr1:2473407-2473487 7 6.76e-05 TGCACT TGAGTGTG GCCACACCGT chr16:81659864-81659944 50 6.76e-05 GACTATTTTA TGAGTGTG GTGAGGTGAC chr17:42667497-42667577 13 8.62e-05 agtgtgttca tgtgtgta ttgtgtctag chr11:4006568-4006648 17 8.62e-05 tttttttgta tgtgtgta tacatcattt chr3:14451873-14451953 15 1.19e-04 GTCACTGGAA AGTGGGTG GGAGGGCAAA chr1:109740248-109740328 60 1.54e-04 GCCTTGTTTG AGAgtgtg tgtgtgtgtg chr2:84198393-84198473 24 1.92e-04 gtgcagatgt agtgtgta gtgtgtaagt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:161795272-161795352 1.7e-05 25_[+2]_47 chr6:11491493-11491573 1.7e-05 18_[+2]_54 chr22:20776628-20776708 1.7e-05 20_[+2]_52 chr15:27597127-27597207 1.7e-05 9_[+2]_63 chr1:156663324-156663404 1.7e-05 9_[+2]_63 chr1:207097620-207097700 1.7e-05 47_[+2]_25 chr12:104882274-10488235 1.7e-05 57_[+2]_15 chr7:73140584-73140664 1.7e-05 62_[+2]_10 chr5:180097357-180097437 1.7e-05 34_[+2]_38 chr10:75518580-75518660 1.7e-05 33_[+2]_39 chr10:82418356-82418436 1.7e-05 34_[+2]_38 chr6:3777261-3777341 1.7e-05 16_[+2]_56 chr6:2969962-2970042 1.7e-05 59_[+2]_13 chr9:94582050-94582130 1.7e-05 31_[+2]_41 chr5:121485568-121485648 1.7e-05 18_[+2]_54 chr2:176035841-176035921 1.7e-05 44_[+2]_28 chr19:10542044-10542124 3.3e-05 72_[+2] chr7:148394031-148394111 3.3e-05 67_[+2]_5 chr1:2473407-2473487 6.8e-05 6_[+2]_66 chr16:81659864-81659944 6.8e-05 49_[+2]_23 chr17:42667497-42667577 8.6e-05 12_[+2]_60 chr11:4006568-4006648 8.6e-05 16_[+2]_56 chr3:14451873-14451953 0.00012 14_[+2]_58 chr1:109740248-109740328 0.00015 59_[+2]_13 chr2:84198393-84198473 0.00019 23_[+2]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTGTGTG width=8 seqs=25 chr6:161795272-161795352 ( 26) TGTGTGTG 1 chr6:11491493-11491573 ( 19) TGTGTGTG 1 chr22:20776628-20776708 ( 21) TGTGTGTG 1 chr15:27597127-27597207 ( 10) TGTGTGTG 1 chr1:156663324-156663404 ( 10) TGTGTGTG 1 chr1:207097620-207097700 ( 48) TGTGTGTG 1 chr12:104882274-10488235 ( 58) TGTGTGTG 1 chr7:73140584-73140664 ( 63) TGTGTGTG 1 chr5:180097357-180097437 ( 35) TGTGTGTG 1 chr10:75518580-75518660 ( 34) TGTGTGTG 1 chr10:82418356-82418436 ( 35) TGTGTGTG 1 chr6:3777261-3777341 ( 17) TGTGTGTG 1 chr6:2969962-2970042 ( 60) TGTGTGTG 1 chr9:94582050-94582130 ( 32) TGTGTGTG 1 chr5:121485568-121485648 ( 19) TGTGTGTG 1 chr2:176035841-176035921 ( 45) TGTGTGTG 1 chr19:10542044-10542124 ( 73) TGTGGGTG 1 chr7:148394031-148394111 ( 68) TGTGGGTG 1 chr1:2473407-2473487 ( 7) TGAGTGTG 1 chr16:81659864-81659944 ( 50) TGAGTGTG 1 chr17:42667497-42667577 ( 13) TGTGTGTA 1 chr11:4006568-4006648 ( 17) TGTGTGTA 1 chr3:14451873-14451953 ( 15) AGTGGGTG 1 chr1:109740248-109740328 ( 60) AGAGTGTG 1 chr2:84198393-84198473 ( 24) AGTGTGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0004 E= 1.4e-008 -116 -1129 -1129 175 -1129 -1129 203 -1129 -116 -1129 -1129 175 -1129 -1129 203 -1129 -1129 -1129 -103 175 -1129 -1129 203 -1129 -1129 -1129 -1129 193 -116 -1129 184 -1129 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 1.4e-008 0.120000 0.000000 0.000000 0.880000 0.000000 0.000000 1.000000 0.000000 0.120000 0.000000 0.000000 0.880000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.120000 0.880000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.120000 0.000000 0.880000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-2 regular expression -------------------------------------------------------------------------------- TGTGTGTG -------------------------------------------------------------------------------- Time 8.83 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTKTCYC MEME-3 width = 8 sites = 56 llr = 421 E-value = 7.2e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTKTCYC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 38::3a47 probability G :::4:::: matrix T 72a67:63 bits 2.2 * 1.9 * 1.7 * * 1.5 * * Relative 1.3 ** * Entropy 1.1 ******** (10.8 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTTTCTC consensus CT GC CT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTKTCYC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:156663324-156663404 68 1.41e-05 cctctctctg tctttctc GGGGC chr6:27445584-27445664 13 1.41e-05 ttcctcctct tctttctc cttcatcctc chr17:38601426-38601506 6 1.41e-05 GCGTT TCTTTCTC CACCTTATtc chr19:8139621-8139701 48 2.61e-05 atcacagcac tctttccc tgtgatcaca chr19:41283041-41283121 62 2.61e-05 tgggagaaat tctttccc tgcctcaatt chr18:3583326-3583406 46 2.61e-05 ctctttcttg tctttccc cttcctcctc chr22:22806745-22806825 28 2.61e-05 TTCTTTGTTC TCTTTCCC TTTGCTACCA chr22:20776628-20776708 39 3.93e-05 tcacagcgcg tctgtctc tgtgagcggt chr19:1701025-1701105 16 3.93e-05 tgtgtctctc tctgtctc tatctcttct chr1:228538325-228538405 8 3.93e-05 atttctc tctgtctc tatatttctc chr19:13093535-13093615 37 3.93e-05 tctccccatc tctgtctc tccataccca chr19:4228935-4229015 32 3.93e-05 tctctctgtc tctgtctc tgtcatctcc chr22:22927398-22927478 14 7.47e-05 ctcctcctcc tcttcctc ttcttttttc chr6:161459039-161459119 48 7.47e-05 ctttcttctg cctttctc acgctttctc chr20:48876340-48876420 69 7.47e-05 TTTTTCTCTT CCTTTCTC CCCA chr11:10771253-10771333 5 1.12e-04 aagc tcttcccc aacatgccgt chr1:28692967-28693047 33 1.12e-04 ctcttttctt tctttctt tctttctttt chr1:166643535-166643615 13 1.12e-04 ttcttgctcc ccttTCCC CACTTGTCCC chr1:182227469-182227549 16 1.12e-04 tctccttcct tcttcccc ttcttctttc chr19:44282273-44282353 1 1.12e-04 . TCTTCCCC CAAATCCCGG chr12:91960664-91960744 45 1.12e-04 ttatcatccc tcttcccc accttcttcg chr22:26880232-26880312 13 1.26e-04 ttaaaggtCG TCTTTCCT TTTATTACGG chr8:98749006-98749086 53 1.26e-04 gtcctgtgta tctttcct tttctcttat chr1:39698118-39698198 2 1.26e-04 c tctttcct ctatgaatgc chr1:1832493-1832573 44 1.48e-04 agagccagat cctgtctc aagaaagaaa chr19:1668225-1668305 68 1.48e-04 tgcctgtctc tctgcctc tctgt chr1:92270006-92270086 20 1.48e-04 AGCTCATGAA CCTGTCTC CCATCCTTCC chr1:8852107-8852187 32 1.48e-04 aaagcaagac cctgtctc aaaagaagga chr19:41105633-41105713 57 1.48e-04 tttctagtta cctgtctc ttttcctctc chr22:20836908-20836988 61 1.48e-04 aagcggtact tctgcctc agcctcccaa chr9:94582050-94582130 50 1.94e-04 cctgtgtttg tctgtctt tgaatgtcat chr2:15702971-15703051 43 1.94e-04 ttctgcaaag cctgtccc ctccacttgg chr1:156739138-156739218 8 2.10e-04 tgtttta tttttctc cattgcactt chr3:24303304-24303384 34 2.10e-04 actttgctga tttttctc actgaacaat chr19:3706123-3706203 18 2.60e-04 GCCTTCTGTG CCTTCCCC GCATCCCCCC chr7:127535736-127535816 29 2.60e-04 TTAGCTTTTC CCTTTCTT CAGAAAAGAT chr22:22640205-22640285 43 2.60e-04 acatttcatc tcttcctt tcatttcatc chr19:45754172-45754252 31 2.60e-04 gtcatctggc tcttcctt catctccttg chr17:29635584-29635664 13 2.74e-04 AAACACACGA TTTTTCCC TGCTAAACAG chr20:49040139-49040219 67 2.74e-04 ctggtcctaa tttttccc actgTT chr15:80444183-80444263 14 2.98e-04 cccctcccct cctttcct ctttttccct chr7:99718127-99718207 16 2.98e-04 ACTTTACGTT TCTTCCCT GGATTCCTTT chr1:142829683-142829763 39 3.23e-04 tctatctact tttgtctc catatgttta chr19:54448876-54448956 45 3.58e-04 ATTGGTGCTG TCTGCCTT GCCTGCAGGA chr3:39222787-39222867 13 3.99e-04 aactgctaac cttttctc ttggactttg chr6:157738718-157738798 49 3.99e-04 ccaatacctc cttttctc acactgctcc chr6:2969962-2970042 10 3.99e-04 ACTTCCTGC TTTGTCCC TCTGTTTCCT chr2:44396827-44396907 12 4.34e-04 CTCATCAGCT TCTGCCCT ACTCTGCGCT chr22:20823521-20823601 26 4.34e-04 AGAAGGATGA CCTGTCCT CACATGGACG chr19:10655235-10655315 31 4.34e-04 atcagaacta cctTCCTT CATCCTGAAT chr19:48606806-48606886 46 4.34e-04 attagtcatg tctgccct gggcttggca chr10:75011844-75011924 11 4.77e-04 GCACAATTCC CTTTTCCC ACTGAAATGT chr7:120688530-120688610 47 4.77e-04 ttaacgtttt tttttctt ctgttcttgt chr1:22476790-22476870 58 4.77e-04 tttcttttct tttttctt tttttttgag chr1:40626649-40626729 62 6.62e-04 tctttgctta ttttcctt ctaccaggga chr6:17962482-17962562 52 8.41e-04 agagaaagac tccgtctc aaaaaacaaa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTKTCYC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:156663324-156663404 1.4e-05 67_[+3]_5 chr6:27445584-27445664 1.4e-05 12_[+3]_60 chr17:38601426-38601506 1.4e-05 5_[+3]_67 chr19:8139621-8139701 2.6e-05 47_[+3]_25 chr19:41283041-41283121 2.6e-05 61_[+3]_11 chr18:3583326-3583406 2.6e-05 45_[+3]_27 chr22:22806745-22806825 2.6e-05 27_[+3]_45 chr22:20776628-20776708 3.9e-05 38_[+3]_34 chr19:1701025-1701105 3.9e-05 15_[+3]_57 chr1:228538325-228538405 3.9e-05 7_[+3]_65 chr19:13093535-13093615 3.9e-05 36_[+3]_36 chr19:4228935-4229015 3.9e-05 31_[+3]_41 chr22:22927398-22927478 7.5e-05 13_[+3]_59 chr6:161459039-161459119 7.5e-05 47_[+3]_25 chr20:48876340-48876420 7.5e-05 68_[+3]_4 chr11:10771253-10771333 0.00011 4_[+3]_68 chr1:28692967-28693047 0.00011 32_[+3]_40 chr1:166643535-166643615 0.00011 12_[+3]_60 chr1:182227469-182227549 0.00011 15_[+3]_57 chr19:44282273-44282353 0.00011 [+3]_72 chr12:91960664-91960744 0.00011 44_[+3]_28 chr22:26880232-26880312 0.00013 12_[+3]_60 chr8:98749006-98749086 0.00013 52_[+3]_20 chr1:39698118-39698198 0.00013 1_[+3]_71 chr1:1832493-1832573 0.00015 43_[+3]_29 chr19:1668225-1668305 0.00015 67_[+3]_5 chr1:92270006-92270086 0.00015 19_[+3]_53 chr1:8852107-8852187 0.00015 31_[+3]_41 chr19:41105633-41105713 0.00015 56_[+3]_16 chr22:20836908-20836988 0.00015 60_[+3]_12 chr9:94582050-94582130 0.00019 49_[+3]_23 chr2:15702971-15703051 0.00019 42_[+3]_30 chr1:156739138-156739218 0.00021 7_[+3]_65 chr3:24303304-24303384 0.00021 33_[+3]_39 chr19:3706123-3706203 0.00026 17_[+3]_55 chr7:127535736-127535816 0.00026 28_[+3]_44 chr22:22640205-22640285 0.00026 42_[+3]_30 chr19:45754172-45754252 0.00026 30_[+3]_42 chr17:29635584-29635664 0.00027 12_[+3]_60 chr20:49040139-49040219 0.00027 66_[+3]_6 chr15:80444183-80444263 0.0003 13_[+3]_59 chr7:99718127-99718207 0.0003 15_[+3]_57 chr1:142829683-142829763 0.00032 38_[+3]_34 chr19:54448876-54448956 0.00036 44_[+3]_28 chr3:39222787-39222867 0.0004 12_[+3]_60 chr6:157738718-157738798 0.0004 48_[+3]_24 chr6:2969962-2970042 0.0004 9_[+3]_63 chr2:44396827-44396907 0.00043 11_[+3]_61 chr22:20823521-20823601 0.00043 25_[+3]_47 chr19:10655235-10655315 0.00043 30_[+3]_42 chr19:48606806-48606886 0.00043 45_[+3]_27 chr10:75011844-75011924 0.00048 10_[+3]_62 chr7:120688530-120688610 0.00048 46_[+3]_26 chr1:22476790-22476870 0.00048 57_[+3]_15 chr1:40626649-40626729 0.00066 61_[+3]_11 chr6:17962482-17962562 0.00084 51_[+3]_21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTKTCYC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTKTCYC width=8 seqs=56 chr1:156663324-156663404 ( 68) TCTTTCTC 1 chr6:27445584-27445664 ( 13) TCTTTCTC 1 chr17:38601426-38601506 ( 6) TCTTTCTC 1 chr19:8139621-8139701 ( 48) TCTTTCCC 1 chr19:41283041-41283121 ( 62) TCTTTCCC 1 chr18:3583326-3583406 ( 46) TCTTTCCC 1 chr22:22806745-22806825 ( 28) TCTTTCCC 1 chr22:20776628-20776708 ( 39) TCTGTCTC 1 chr19:1701025-1701105 ( 16) TCTGTCTC 1 chr1:228538325-228538405 ( 8) TCTGTCTC 1 chr19:13093535-13093615 ( 37) TCTGTCTC 1 chr19:4228935-4229015 ( 32) TCTGTCTC 1 chr22:22927398-22927478 ( 14) TCTTCCTC 1 chr6:161459039-161459119 ( 48) CCTTTCTC 1 chr20:48876340-48876420 ( 69) CCTTTCTC 1 chr11:10771253-10771333 ( 5) TCTTCCCC 1 chr1:28692967-28693047 ( 33) TCTTTCTT 1 chr1:166643535-166643615 ( 13) CCTTTCCC 1 chr1:182227469-182227549 ( 16) TCTTCCCC 1 chr19:44282273-44282353 ( 1) TCTTCCCC 1 chr12:91960664-91960744 ( 45) TCTTCCCC 1 chr22:26880232-26880312 ( 13) TCTTTCCT 1 chr8:98749006-98749086 ( 53) TCTTTCCT 1 chr1:39698118-39698198 ( 2) TCTTTCCT 1 chr1:1832493-1832573 ( 44) CCTGTCTC 1 chr19:1668225-1668305 ( 68) TCTGCCTC 1 chr1:92270006-92270086 ( 20) CCTGTCTC 1 chr1:8852107-8852187 ( 32) CCTGTCTC 1 chr19:41105633-41105713 ( 57) CCTGTCTC 1 chr22:20836908-20836988 ( 61) TCTGCCTC 1 chr9:94582050-94582130 ( 50) TCTGTCTT 1 chr2:15702971-15703051 ( 43) CCTGTCCC 1 chr1:156739138-156739218 ( 8) TTTTTCTC 1 chr3:24303304-24303384 ( 34) TTTTTCTC 1 chr19:3706123-3706203 ( 18) CCTTCCCC 1 chr7:127535736-127535816 ( 29) CCTTTCTT 1 chr22:22640205-22640285 ( 43) TCTTCCTT 1 chr19:45754172-45754252 ( 31) TCTTCCTT 1 chr17:29635584-29635664 ( 13) TTTTTCCC 1 chr20:49040139-49040219 ( 67) TTTTTCCC 1 chr15:80444183-80444263 ( 14) CCTTTCCT 1 chr7:99718127-99718207 ( 16) TCTTCCCT 1 chr1:142829683-142829763 ( 39) TTTGTCTC 1 chr19:54448876-54448956 ( 45) TCTGCCTT 1 chr3:39222787-39222867 ( 13) CTTTTCTC 1 chr6:157738718-157738798 ( 49) CTTTTCTC 1 chr6:2969962-2970042 ( 10) TTTGTCCC 1 chr2:44396827-44396907 ( 12) TCTGCCCT 1 chr22:20823521-20823601 ( 26) CCTGTCCT 1 chr19:10655235-10655315 ( 31) CCTTCCTT 1 chr19:48606806-48606886 ( 46) TCTGCCCT 1 chr10:75011844-75011924 ( 11) CTTTTCCC 1 chr7:120688530-120688610 ( 47) TTTTTCTT 1 chr1:22476790-22476870 ( 58) TTTTTCTT 1 chr1:40626649-40626729 ( 62) TTTTCCTT 1 chr6:17962482-17962562 ( 52) TCCGTCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTKTCYC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0167 E= 7.2e-003 -1245 34 -1245 145 -1245 180 -1245 -29 -1245 -365 -1245 191 -1245 -1245 54 130 -1245 34 -1245 145 -1245 215 -1245 -1245 -1245 87 -1245 117 -1245 159 -1245 30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTKTCYC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 56 E= 7.2e-003 0.000000 0.285714 0.000000 0.714286 0.000000 0.785714 0.000000 0.214286 0.000000 0.017857 0.000000 0.982143 0.000000 0.000000 0.357143 0.642857 0.000000 0.285714 0.000000 0.714286 0.000000 1.000000 0.000000 0.000000 0.000000 0.410714 0.000000 0.589286 0.000000 0.678571 0.000000 0.321429 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTKTCYC MEME-3 regular expression -------------------------------------------------------------------------------- [TC][CT]T[TG][TC]C[TC][CT] -------------------------------------------------------------------------------- Time 12.54 secs. ******************************************************************************** ******************************************************************************** MOTIF GAGACAGA MEME-4 width = 8 sites = 56 llr = 434 E-value = 1.2e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGACAGA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a:73a:a pos.-specific C 2:2:6:3: probability G 8:832:7: matrix T :::::::: bits 2.2 1.9 * * * 1.7 * * * 1.5 * * * Relative 1.3 *** * * Entropy 1.1 **** *** (11.2 bits) 0.9 **** *** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAGACAGA consensus C CGA C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACAGA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:5056938-5057018 19 1.71e-05 aaagatggga gagacaga gagagcaaga chr1:4067769-4067849 58 1.71e-05 aaaagataca gagacaga aaaagggaag chr1:4067173-4067253 60 1.71e-05 gagagacaga gagacaga gagacagaga chr11:1866235-1866315 57 1.71e-05 catggagaca gagacaga cagagggaca chr1:1532024-1532104 4 1.71e-05 aca gagacaga tacagagaga chr18:8915061-8915141 45 1.71e-05 aagagagaaa gagacaga aaatcaaaga chr11:65283968-65284048 65 1.71e-05 acagaggaga gagacaga gagagagg chr1:22476790-22476870 73 1.71e-05 cttttttttt gagacaga chr1:181068989-181069069 66 1.71e-05 GAAGGCAAGA GAGACAGA TGTCTGT chr15:63413862-63413942 3 1.71e-05 ga gagacaga aaggaaaaac chr12:125360936-12536101 54 3.27e-05 cacacacacg gagacaca cacattggca chr8:41653693-41653773 47 3.27e-05 caagaaaact gagacaca gagaaaagtg chr20:61376747-61376827 47 3.27e-05 caggagaaca gagacaca gagatacaga chr19:2568195-2568275 69 3.27e-05 cacacatata gagacaca tata chr22:20764957-20765037 17 3.27e-05 catacacaga gagacaca cagatgcata chr11:5256719-5256799 73 6.87e-05 ggatagggaa gagaaaga chr10:51488747-51488827 26 6.87e-05 gagatgagag gagaaaga aacgggacgg chr6:17962482-17962562 43 6.87e-05 ctagatgaca gagaaaga ctccgtctca chr17:80296579-80296659 2 6.87e-05 a gagaaaga gaAAATACTT chr1:24307833-24307913 68 6.87e-05 ttgaactcgg gaggcaga ggttg chr22:23333319-23333399 2 6.87e-05 g gaggcaga ggttgcagtg chr3:195919657-195919737 59 6.87e-05 CCTACGTGGA GAGGCAGA GCCTGGGACG chr1:71505811-71505891 9 6.87e-05 gagaaaga gagaaaga aaaaaagaaa chr2:61582793-61582873 36 6.87e-05 tggaagaaat gaggcaga aaaacactac chr9:100735208-100735288 40 6.87e-05 gagagaagaa gagaaaga gggagggagg chr6:158313059-158313139 48 6.87e-05 GGAGTGGGAA GAGAAAGA GGATGAAGAT chr7:77561828-77561908 61 1.19e-04 gagagaggga gagagaga aagaggaaga chrX:135851138-135851218 9 1.19e-04 aagagagg gagagaga gtaagagagg chr22:22797414-22797494 53 1.19e-04 gagagagaaa gagagaga aaagaaagaa chr11:35061958-35062038 70 1.19e-04 AGCAGTGGGA GAGAGAGA GAA chr5:121485568-121485648 54 1.19e-04 gcgtgagaga gagagaga gagagaggga chr19:11646644-11646724 43 1.52e-04 GCGACATGAA GAGAAACA GAATGACTCA chr8:99819994-99820074 29 1.52e-04 AAAGCAGGCA GAGAAACA GAGGCAACAG chr1:16471248-16471328 9 1.85e-04 ggtggaag gacacaca ccaggggcaa chr17:19091382-19091462 26 1.85e-04 cgaaaaccac gaggaaga gaggtagcgt chr5:10708510-10708590 44 1.85e-04 acacatatca gacacaca cacacacaca chr7:143543731-143543811 1 1.85e-04 . gaggaaga aaggaacaaa chr2:15702971-15703051 12 1.85e-04 gaacacacca gacacaca tcaacttcag chr1:234720592-234720672 62 2.99e-04 GAGGTGAAGT CAGGCAGA AGTGTCAGGG chr7:106417182-106417262 67 2.99e-04 agtagagctg gagggaga gttaca chr22:19077890-19077970 44 2.99e-04 atcctaaaag caggcaga aaaagaagac chr7:98871392-98871472 44 3.31e-04 aggaaaggaa gacagaga ggaaaggaag chr6:31937888-31937968 61 3.31e-04 GAAGTTCATG CACACAGA GGGATTCCAG chr22:19981699-19981779 35 3.31e-04 GTGGGAGATG GACAGAga tgaatggatg chr20:49383937-49384017 8 3.31e-04 acacaca cacacaGA ACAATTTAAG chr15:21921760-21921840 54 3.65e-04 CAAGGAAAAA GAGGAACA TTAATAGGGC chr3:5034373-5034453 48 4.41e-04 ggaaagaagg gagggaca gagggaagga chr20:31162162-31162242 1 4.58e-04 . gacgaaga aactgaggca chr1:142817067-142817147 42 5.04e-04 tcagactggg caggaaga gtgaaattcc chr10:47059239-47059319 46 5.04e-04 aatccaaaac cacacaca tcataaaacc chr7:100178113-100178193 68 5.04e-04 cacacccaaa cacacaca acaca chr6:44012284-44012364 52 5.04e-04 ctcacataca cacacaca cattcatata chr1:228632793-228632873 69 5.04e-04 aaaacacgca cacacaca caaa chr15:80444183-80444263 48 5.04e-04 tctctctTTC CACACACA CATAACCTGt chr17:32199314-32199394 49 5.04e-04 AGGGGTCAGG CAGGAAGA TGAGCAAAGA chr3:32535354-32535434 27 5.81e-04 ccagggtagt cagggaga gaagctcgat -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACAGA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:5056938-5057018 1.7e-05 18_[+4]_54 chr1:4067769-4067849 1.7e-05 57_[+4]_15 chr1:4067173-4067253 1.7e-05 59_[+4]_13 chr11:1866235-1866315 1.7e-05 56_[+4]_16 chr1:1532024-1532104 1.7e-05 3_[+4]_69 chr18:8915061-8915141 1.7e-05 44_[+4]_28 chr11:65283968-65284048 1.7e-05 64_[+4]_8 chr1:22476790-22476870 1.7e-05 72_[+4] chr1:181068989-181069069 1.7e-05 65_[+4]_7 chr15:63413862-63413942 1.7e-05 2_[+4]_70 chr12:125360936-12536101 3.3e-05 53_[+4]_19 chr8:41653693-41653773 3.3e-05 46_[+4]_26 chr20:61376747-61376827 3.3e-05 46_[+4]_26 chr19:2568195-2568275 3.3e-05 68_[+4]_4 chr22:20764957-20765037 3.3e-05 16_[+4]_56 chr11:5256719-5256799 6.9e-05 72_[+4] chr10:51488747-51488827 6.9e-05 25_[+4]_47 chr6:17962482-17962562 6.9e-05 42_[+4]_30 chr17:80296579-80296659 6.9e-05 1_[+4]_71 chr1:24307833-24307913 6.9e-05 67_[+4]_5 chr22:23333319-23333399 6.9e-05 1_[+4]_71 chr3:195919657-195919737 6.9e-05 58_[+4]_14 chr1:71505811-71505891 6.9e-05 8_[+4]_64 chr2:61582793-61582873 6.9e-05 35_[+4]_37 chr9:100735208-100735288 6.9e-05 39_[+4]_33 chr6:158313059-158313139 6.9e-05 47_[+4]_25 chr7:77561828-77561908 0.00012 60_[+4]_12 chrX:135851138-135851218 0.00012 8_[+4]_64 chr22:22797414-22797494 0.00012 52_[+4]_20 chr11:35061958-35062038 0.00012 69_[+4]_3 chr5:121485568-121485648 0.00012 53_[+4]_19 chr19:11646644-11646724 0.00015 42_[+4]_30 chr8:99819994-99820074 0.00015 28_[+4]_44 chr1:16471248-16471328 0.00018 8_[+4]_64 chr17:19091382-19091462 0.00018 25_[+4]_47 chr5:10708510-10708590 0.00018 43_[+4]_29 chr7:143543731-143543811 0.00018 [+4]_72 chr2:15702971-15703051 0.00018 11_[+4]_61 chr1:234720592-234720672 0.0003 61_[+4]_11 chr7:106417182-106417262 0.0003 66_[+4]_6 chr22:19077890-19077970 0.0003 43_[+4]_29 chr7:98871392-98871472 0.00033 43_[+4]_29 chr6:31937888-31937968 0.00033 60_[+4]_12 chr22:19981699-19981779 0.00033 34_[+4]_38 chr20:49383937-49384017 0.00033 7_[+4]_65 chr15:21921760-21921840 0.00036 53_[+4]_19 chr3:5034373-5034453 0.00044 47_[+4]_25 chr20:31162162-31162242 0.00046 [+4]_72 chr1:142817067-142817147 0.0005 41_[+4]_31 chr10:47059239-47059319 0.0005 45_[+4]_27 chr7:100178113-100178193 0.0005 67_[+4]_5 chr6:44012284-44012364 0.0005 51_[+4]_21 chr1:228632793-228632873 0.0005 68_[+4]_4 chr15:80444183-80444263 0.0005 47_[+4]_25 chr17:32199314-32199394 0.0005 48_[+4]_24 chr3:32535354-32535434 0.00058 26_[+4]_46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACAGA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGACAGA width=8 seqs=56 chr3:5056938-5057018 ( 19) GAGACAGA 1 chr1:4067769-4067849 ( 58) GAGACAGA 1 chr1:4067173-4067253 ( 60) GAGACAGA 1 chr11:1866235-1866315 ( 57) GAGACAGA 1 chr1:1532024-1532104 ( 4) GAGACAGA 1 chr18:8915061-8915141 ( 45) GAGACAGA 1 chr11:65283968-65284048 ( 65) GAGACAGA 1 chr1:22476790-22476870 ( 73) GAGACAGA 1 chr1:181068989-181069069 ( 66) GAGACAGA 1 chr15:63413862-63413942 ( 3) GAGACAGA 1 chr12:125360936-12536101 ( 54) GAGACACA 1 chr8:41653693-41653773 ( 47) GAGACACA 1 chr20:61376747-61376827 ( 47) GAGACACA 1 chr19:2568195-2568275 ( 69) GAGACACA 1 chr22:20764957-20765037 ( 17) GAGACACA 1 chr11:5256719-5256799 ( 73) GAGAAAGA 1 chr10:51488747-51488827 ( 26) GAGAAAGA 1 chr6:17962482-17962562 ( 43) GAGAAAGA 1 chr17:80296579-80296659 ( 2) GAGAAAGA 1 chr1:24307833-24307913 ( 68) GAGGCAGA 1 chr22:23333319-23333399 ( 2) GAGGCAGA 1 chr3:195919657-195919737 ( 59) GAGGCAGA 1 chr1:71505811-71505891 ( 9) GAGAAAGA 1 chr2:61582793-61582873 ( 36) GAGGCAGA 1 chr9:100735208-100735288 ( 40) GAGAAAGA 1 chr6:158313059-158313139 ( 48) GAGAAAGA 1 chr7:77561828-77561908 ( 61) GAGAGAGA 1 chrX:135851138-135851218 ( 9) GAGAGAGA 1 chr22:22797414-22797494 ( 53) GAGAGAGA 1 chr11:35061958-35062038 ( 70) GAGAGAGA 1 chr5:121485568-121485648 ( 54) GAGAGAGA 1 chr19:11646644-11646724 ( 43) GAGAAACA 1 chr8:99819994-99820074 ( 29) GAGAAACA 1 chr1:16471248-16471328 ( 9) GACACACA 1 chr17:19091382-19091462 ( 26) GAGGAAGA 1 chr5:10708510-10708590 ( 44) GACACACA 1 chr7:143543731-143543811 ( 1) GAGGAAGA 1 chr2:15702971-15703051 ( 12) GACACACA 1 chr1:234720592-234720672 ( 62) CAGGCAGA 1 chr7:106417182-106417262 ( 67) GAGGGAGA 1 chr22:19077890-19077970 ( 44) CAGGCAGA 1 chr7:98871392-98871472 ( 44) GACAGAGA 1 chr6:31937888-31937968 ( 61) CACACAGA 1 chr22:19981699-19981779 ( 35) GACAGAGA 1 chr20:49383937-49384017 ( 8) CACACAGA 1 chr15:21921760-21921840 ( 54) GAGGAACA 1 chr3:5034373-5034453 ( 48) GAGGGACA 1 chr20:31162162-31162242 ( 1) GACGAAGA 1 chr1:142817067-142817147 ( 42) CAGGAAGA 1 chr10:47059239-47059319 ( 46) CACACACA 1 chr7:100178113-100178193 ( 68) CACACACA 1 chr6:44012284-44012364 ( 52) CACACACA 1 chr1:228632793-228632873 ( 69) CACACACA 1 chr15:80444183-80444263 ( 48) CACACACA 1 chr17:32199314-32199394 ( 49) CAGGAAGA 1 chr3:32535354-32535434 ( 27) CAGGGAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACAGA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0167 E= 1.2e-008 -1245 -7 168 -1245 190 -1245 -1245 -1245 -1245 4 165 -1245 145 -1245 13 -1245 0 130 -46 -1245 190 -1245 -1245 -1245 -1245 43 151 -1245 190 -1245 -1245 -1245 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACAGA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 56 E= 1.2e-008 0.000000 0.214286 0.785714 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.232143 0.767857 0.000000 0.732143 0.000000 0.267857 0.000000 0.267857 0.553571 0.178571 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.303571 0.696429 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACAGA MEME-4 regular expression -------------------------------------------------------------------------------- [GC]A[GC][AG][CA]A[GC]A -------------------------------------------------------------------------------- Time 16.16 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCATYTY MEME-5 width = 8 sites = 29 llr = 253 E-value = 1.0e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCATYTY MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::9:::: pos.-specific C 8aa:14:6 probability G :::::::: matrix T 2::196a4 bits 2.2 ** 1.9 ** * 1.7 ** * 1.5 *** * Relative 1.3 ***** * Entropy 1.1 ******** (12.6 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCCATTTC consensus T C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCATYTY MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr5:153125551-153125631 27 1.24e-05 tctaggtatc cccatttc acagctaggt chr8:41653693-41653773 24 1.24e-05 TCACAGCAGA cccatttc ccagacaaga chr22:23270337-23270417 3 1.24e-05 tg cccatttc acagatgaga chr20:55989902-55989982 65 1.24e-05 gttgactgtg cccatttc acagatgg chr22:21937461-21937541 64 2.30e-05 TCTTTCAAGG CCCATCTC AGAGCCTGT chr19:41105633-41105713 12 2.30e-05 TCAGGCTCTT CCCATCTC TGCATTAttt chr3:53290314-53290394 34 3.73e-05 CACGGCGAAT cccatttt agagatggac chr7:73081762-73081842 26 3.73e-05 catctccaac cccatttt acagaagaga chr17:56416052-56416132 66 3.73e-05 atagaggtgg cccatttt gaacctg chr12:111834608-11183468 15 3.73e-05 ATTCTttgtt cccatttt acagatgcgg chr19:11484977-11485057 31 3.73e-05 tatcataagc cccatttt acagcagggc chr1:22476790-22476870 8 3.73e-05 gatgaag cccatttt ctcCACCTGG chr3:14446474-14446554 20 3.73e-05 GTGAGCAGTA CCCATTTT ATAGATGGAC chr6:44097589-44097669 41 3.73e-05 ggattattgt cccatttt acaaatgaag chr9:130976559-130976639 18 3.73e-05 CTCACAGCAA cccatttt actgatgtgg chr7:73669263-73669343 17 3.73e-05 ccacccccac cccatttt gcagaggagg chr1:182227469-182227549 62 6.41e-05 TTTCTGTCTT TCCATTTC TTAATAATAA chr22:22806745-22806825 46 7.47e-05 TTTGCTACCA CCCACTTC TCCCCTCTAA chr19:1668225-1668305 6 8.70e-05 ctgtc tccatctc tctcgttgtc chr1:142817067-142817147 57 8.70e-05 agagtgaaat tccatctc aaaaaacaaa chr1:228538325-228538405 68 8.70e-05 tctctgtttc tccatctc tttct chr19:13093535-13093615 68 8.70e-05 cccatgtctc tccatctc catgt chr19:11676405-11676485 70 9.62e-05 gagggatctt cccacctc agc chr12:91960664-91960744 65 9.62e-05 cttcttcgtt cccacctc ccttccct chr19:21756425-21756505 17 9.62e-05 aggtgatcca cccacctc agcctcccaa chr3:70965646-70965726 50 1.25e-04 ccatgttatc tccatttt acagaaggga chr1:166643535-166643615 73 1.25e-04 TGGTCCTCTT CCCTTTTC chr17:29635584-29635664 52 1.62e-04 CTGTTTTTTA CCCTTCTC AAGGGTGTTC chr20:48876340-48876420 27 1.62e-04 ccatcctctc cccttctc ctttcctctc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCATYTY MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:153125551-153125631 1.2e-05 26_[+5]_46 chr8:41653693-41653773 1.2e-05 23_[+5]_49 chr22:23270337-23270417 1.2e-05 2_[+5]_70 chr20:55989902-55989982 1.2e-05 64_[+5]_8 chr22:21937461-21937541 2.3e-05 63_[+5]_9 chr19:41105633-41105713 2.3e-05 11_[+5]_61 chr3:53290314-53290394 3.7e-05 33_[+5]_39 chr7:73081762-73081842 3.7e-05 25_[+5]_47 chr17:56416052-56416132 3.7e-05 65_[+5]_7 chr12:111834608-11183468 3.7e-05 14_[+5]_58 chr19:11484977-11485057 3.7e-05 30_[+5]_42 chr1:22476790-22476870 3.7e-05 7_[+5]_65 chr3:14446474-14446554 3.7e-05 19_[+5]_53 chr6:44097589-44097669 3.7e-05 40_[+5]_32 chr9:130976559-130976639 3.7e-05 17_[+5]_55 chr7:73669263-73669343 3.7e-05 16_[+5]_56 chr1:182227469-182227549 6.4e-05 61_[+5]_11 chr22:22806745-22806825 7.5e-05 45_[+5]_27 chr19:1668225-1668305 8.7e-05 5_[+5]_67 chr1:142817067-142817147 8.7e-05 56_[+5]_16 chr1:228538325-228538405 8.7e-05 67_[+5]_5 chr19:13093535-13093615 8.7e-05 67_[+5]_5 chr19:11676405-11676485 9.6e-05 69_[+5]_3 chr12:91960664-91960744 9.6e-05 64_[+5]_8 chr19:21756425-21756505 9.6e-05 16_[+5]_56 chr3:70965646-70965726 0.00012 49_[+5]_23 chr1:166643535-166643615 0.00012 72_[+5] chr17:29635584-29635664 0.00016 51_[+5]_21 chr20:48876340-48876420 0.00016 26_[+5]_46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCATYTY MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCATYTY width=8 seqs=29 chr5:153125551-153125631 ( 27) CCCATTTC 1 chr8:41653693-41653773 ( 24) CCCATTTC 1 chr22:23270337-23270417 ( 3) CCCATTTC 1 chr20:55989902-55989982 ( 65) CCCATTTC 1 chr22:21937461-21937541 ( 64) CCCATCTC 1 chr19:41105633-41105713 ( 12) CCCATCTC 1 chr3:53290314-53290394 ( 34) CCCATTTT 1 chr7:73081762-73081842 ( 26) CCCATTTT 1 chr17:56416052-56416132 ( 66) CCCATTTT 1 chr12:111834608-11183468 ( 15) CCCATTTT 1 chr19:11484977-11485057 ( 31) CCCATTTT 1 chr1:22476790-22476870 ( 8) CCCATTTT 1 chr3:14446474-14446554 ( 20) CCCATTTT 1 chr6:44097589-44097669 ( 41) CCCATTTT 1 chr9:130976559-130976639 ( 18) CCCATTTT 1 chr7:73669263-73669343 ( 17) CCCATTTT 1 chr1:182227469-182227549 ( 62) TCCATTTC 1 chr22:22806745-22806825 ( 46) CCCACTTC 1 chr19:1668225-1668305 ( 6) TCCATCTC 1 chr1:142817067-142817147 ( 57) TCCATCTC 1 chr1:228538325-228538405 ( 68) TCCATCTC 1 chr19:13093535-13093615 ( 68) TCCATCTC 1 chr19:11676405-11676485 ( 70) CCCACCTC 1 chr12:91960664-91960744 ( 65) CCCACCTC 1 chr19:21756425-21756505 ( 17) CCCACCTC 1 chr3:70965646-70965726 ( 50) TCCATTTT 1 chr1:166643535-166643615 ( 73) CCCTTTTC 1 chr17:29635584-29635664 ( 52) CCCTTCTC 1 chr20:48876340-48876420 ( 27) CCCTTCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCATYTY MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.93691 E= 1.0e-002 -1150 182 -1150 -34 -1150 215 -1150 -1150 -1150 215 -1150 -1150 174 -1150 -1150 -134 -1150 -71 -1150 172 -1150 75 -1150 125 -1150 -1150 -1150 193 -1150 146 -1150 54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCATYTY MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 1.0e-002 0.000000 0.793103 0.000000 0.206897 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.896552 0.000000 0.000000 0.103448 0.000000 0.137931 0.000000 0.862069 0.000000 0.379310 0.000000 0.620690 0.000000 0.000000 0.000000 1.000000 0.000000 0.620690 0.000000 0.379310 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCATYTY MEME-5 regular expression -------------------------------------------------------------------------------- [CT]CCAT[TC]T[CT] -------------------------------------------------------------------------------- Time 19.67 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:64765775-64765855 7.49e-01 80 chr19:21756425-21756505 1.87e-01 16_[+5(9.62e-05)]_56 chr10:49683144-49683224 6.38e-01 80 chr21:9846771-9846851 3.53e-01 80 chr2:176035841-176035921 9.39e-03 44_[+2(1.70e-05)]_1_[+2(1.70e-05)]_\ [+2(1.70e-05)]_11 chr15:21921760-21921840 4.86e-01 80 chr5:121485568-121485648 1.04e-04 12_[+2(1.70e-05)]_[+2(1.70e-05)]_\ [+2(1.70e-05)]_44 chr2:15702971-15703051 2.25e-02 80 chr6:158313059-158313139 1.38e-01 47_[+4(6.87e-05)]_25 chr19:45754172-45754252 1.45e-02 13_[+1(8.93e-05)]_59 chr22:20764957-20765037 2.79e-01 16_[+4(3.27e-05)]_56 chr19:2568195-2568275 2.75e-01 68_[+4(3.27e-05)]_4 chr1:142829683-142829763 1.55e-01 80 chr7:135664063-135664143 2.68e-01 80 chr19:5358370-5358450 6.15e-01 80 chr17:32199314-32199394 2.16e-01 80 chr19:45249108-45249188 1.31e-01 80 chr18:20147927-20148007 4.83e-01 80 chr22:19077890-19077970 6.53e-01 80 chr3:24303304-24303384 6.58e-03 80 chr17:38601426-38601506 2.37e-04 5_[+3(1.41e-05)]_46_[+1(8.93e-05)]_\ 13 chr6:161628734-161628814 9.02e-01 80 chr2:9457866-9457946 9.58e-01 80 chr22:17088508-17088588 1.91e-01 80 chr22:22806745-22806825 5.93e-04 27_[+3(2.61e-05)]_10_[+5(7.47e-05)]_\ 27 chr1:166270016-166270096 8.21e-01 80 chr9:94582050-94582130 1.50e-04 4_[+1(2.99e-05)]_19_[+2(1.70e-05)]_\ 10_[+1(4.52e-05)]_23 chr4:144269578-144269658 4.85e-02 80 chr15:63413862-63413942 1.89e-01 2_[+4(1.71e-05)]_70 chr7:148394031-148394111 3.94e-02 67_[+2(3.29e-05)]_5 chr9:100735208-100735288 1.97e-01 39_[+4(6.87e-05)]_33 chr12:56325246-56325326 7.02e-01 80 chr2:61582793-61582873 3.52e-01 35_[+4(6.87e-05)]_37 chr7:73669263-73669343 5.16e-02 16_[+5(3.73e-05)]_56 chr9:130976559-130976639 9.27e-02 17_[+5(3.73e-05)]_55 chr1:71505811-71505891 2.17e-01 [+4(6.87e-05)]_[+4(6.87e-05)]_64 chr20:49383937-49384017 6.16e-01 80 chr20:61376747-61376827 2.42e-01 [+4(3.27e-05)]_22_[+4(3.27e-05)]_8_\ [+4(3.27e-05)]_14_[+4(3.27e-05)]_4 chr3:195919657-195919737 3.51e-01 38_[+4(6.87e-05)]_12_[+4(6.87e-05)]_\ 14 chr1:39698118-39698198 6.79e-04 53_[+1(1.43e-05)]_19 chr1:38990049-38990129 1.26e-01 80 chr22:20763843-20763923 9.51e-01 80 chr8:98749006-98749086 1.07e-03 25_[+1(8.93e-05)]_47 chr3:48341448-48341528 3.41e-01 80 chr2:80597290-80597370 1.64e-01 80 chr3:5034373-5034453 2.77e-01 80 chr2:25020685-25020765 8.19e-01 80 chr6:44097589-44097669 6.26e-02 40_[+5(3.73e-05)]_32 chr19:4228935-4229015 2.17e-03 25_[+3(3.93e-05)]_47 chr22:22640205-22640285 9.66e-02 80 chr16:81659864-81659944 3.26e-03 12_[+2(6.76e-05)]_29_[+2(6.76e-05)]_\ 13_[+1(6.08e-05)]_2 chr12:91960664-91960744 1.42e-03 9_[+3(7.47e-05)]_47_[+5(9.62e-05)]_\ 8 chr6:2969962-2970042 3.73e-04 40_[+2(1.70e-05)]_[+2(1.70e-05)]_3_\ [+2(1.70e-05)]_13 chr1:181068989-181069069 7.64e-02 65_[+4(1.71e-05)]_7 chr19:48606806-48606886 2.02e-01 80 chr22:17015076-17015156 7.23e-01 80 chr19:2362706-2362786 1.10e-02 30_[+2(1.70e-05)]_42 chr22:22505011-22505091 8.53e-01 80 chr7:99718127-99718207 3.51e-02 80 chr22:23363893-23363973 2.13e-01 80 chr1:23706904-23706984 8.49e-01 80 chr20:562238-562318 5.52e-01 80 chr3:14446474-14446554 2.02e-02 19_[+5(3.73e-05)]_53 chr19:54448876-54448956 2.09e-01 80 chr20:55989902-55989982 7.77e-03 64_[+5(1.24e-05)]_8 chr16:27214792-27214872 4.47e-01 80 chr22:20836908-20836988 1.90e-01 80 chr15:31196011-31196091 8.70e-01 80 chr1:45240172-45240252 4.19e-02 80 chr11:4006568-4006648 3.26e-03 16_[+2(8.62e-05)]_30_[+1(8.93e-05)]_\ 8_[+1(6.08e-05)]_2 chr19:44282273-44282353 6.99e-02 80 chr2:131095553-131095633 8.54e-01 80 chr11:35061958-35062038 2.42e-02 80 chr22:22928738-22928818 9.32e-02 80 chr10:63545664-63545744 6.77e-01 80 chr2:84198393-84198473 2.48e-01 80 chr11:45939720-45939800 4.78e-01 80 chr22:23614226-23614306 8.37e-01 80 chr19:41105633-41105713 1.42e-04 11_[+5(2.30e-05)]_9_[+3(3.93e-05)]_\ 44 chr20:36788101-36788181 9.50e-02 80 chr22:19981699-19981779 5.22e-01 80 chr1:22476790-22476870 3.17e-05 7_[+5(3.73e-05)]_57_[+4(1.71e-05)] chr19:11484977-11485057 9.49e-02 30_[+5(3.73e-05)]_42 chr19:3154640-3154720 7.69e-01 80 chr17:58213111-58213191 8.90e-01 80 chr22:21307679-21307759 4.13e-02 80 chr1:91870371-91870451 9.19e-01 80 chr17:42667497-42667577 4.12e-02 12_[+2(8.62e-05)]_8_[+2(6.76e-05)]_\ 44 chr20:4042842-4042922 1.63e-01 80 chr2:209130842-209130922 3.81e-01 80 chr11:64612695-64612775 4.21e-01 80 chr12:111834608-11183468 6.04e-03 14_[+5(3.73e-05)]_58 chr17:34842345-34842425 3.52e-01 80 chr17:62340797-62340877 7.97e-01 80 chr21:44090654-44090734 9.42e-01 80 chr11:65283968-65284048 7.88e-02 51_[+4(1.71e-05)]_5_[+4(1.71e-05)]_\ 8 chr6:31937888-31937968 5.48e-01 80 chr22:23282930-23283010 9.31e-01 80 chr22:26880232-26880312 1.12e-02 80 chr1:224031788-224031868 3.70e-01 80 chr7:143543731-143543811 3.24e-01 80 chr5:145214358-145214438 7.54e-01 80 chr22:22372846-22372926 6.42e-01 80 chr22:20895237-20895317 7.57e-01 80 chr22:20822914-20822994 3.10e-01 80 chr16:23568302-23568382 4.86e-01 80 chr20:49040139-49040219 2.02e-01 80 chr15:66796374-66796454 2.92e-01 80 chr18:8915061-8915141 1.74e-01 44_[+4(1.71e-05)]_10_[+4(6.87e-05)]_\ 10 chr12:118460082-11846016 9.02e-01 80 chr6:157738718-157738798 5.80e-02 80 chr5:40796322-40796402 9.83e-01 80 chr7:98871392-98871472 6.57e-01 80 chr9:134378321-134378401 6.31e-01 80 chr4:38283448-38283528 4.05e-03 80 chr22:23270337-23270417 6.19e-02 2_[+5(1.24e-05)]_70 chr1:142832071-142832151 4.91e-01 80 chr7:1015132-1015212 9.97e-01 80 chr8:3040686-3040766 6.77e-01 80 chr5:10708510-10708590 3.43e-01 80 chr22:23333319-23333399 1.29e-01 1_[+4(6.87e-05)]_71 chr15:80444183-80444263 2.35e-04 80 chr19:3357472-3357552 1.93e-01 80 chr1:182227469-182227549 4.24e-04 53_[+1(4.52e-05)]_[+5(6.41e-05)]_11 chr19:18403993-18404073 8.20e-01 80 chr22:22912719-22912799 2.95e-01 80 chr22:35653400-35653480 6.47e-01 80 chr1:241878686-241878766 3.52e-01 80 chr1:1532024-1532104 1.71e-01 3_[+4(1.71e-05)]_8_[+4(6.87e-05)]_6_\ [+4(1.71e-05)]_[+4(6.87e-05)]_31 chr19:11379597-11379677 3.07e-01 80 chr2:233415827-233415907 6.71e-02 80 chr22:21282818-21282898 7.54e-01 80 chr11:1866235-1866315 1.90e-01 6_[+4(1.71e-05)]_4_[+4(3.27e-05)]_\ [+4(1.71e-05)]_[+4(8.44e-05)]_8_[+4(1.71e-05)]_12_[+4(8.44e-05)]_2 chr19:48175500-48175580 8.90e-01 80 chr22:22650510-22650590 8.80e-01 80 chr1:228632793-228632873 5.46e-01 80 chr18:3583326-3583406 3.77e-04 45_[+3(2.61e-05)]_13_[+1(4.52e-05)]_\ 6 chr6:27445584-27445664 1.06e-03 [+3(7.47e-05)]_4_[+3(1.41e-05)]_35_\ [+3(7.47e-05)]_17 chr22:22797414-22797494 1.10e-01 36_[+4(6.87e-05)]_2_[+4(6.87e-05)]_\ 26 chr1:4067173-4067253 1.41e-01 4_[+4(1.71e-05)]_2_[+4(1.71e-05)]_\ 29_[+4(1.71e-05)]_[+4(1.71e-05)]_[+4(1.71e-05)]_5 chr22:21937461-21937541 8.66e-05 39_[+1(4.52e-05)]_16_[+5(2.30e-05)]_\ 9 chr1:166643535-166643615 1.97e-02 80 chr6:44012284-44012364 4.42e-01 80 chr20:48876340-48876420 2.04e-03 68_[+3(7.47e-05)]_4 chr7:127535736-127535816 8.58e-02 80 chr16:2255452-2255532 9.08e-01 80 chr1:23443146-23443226 8.60e-02 80 chr19:10655235-10655315 1.26e-01 80 chr3:39222787-39222867 7.91e-02 80 chr1:24307833-24307913 1.26e-01 67_[+4(6.87e-05)]_5 chr17:56416052-56416132 3.78e-02 65_[+5(3.73e-05)]_7 chr22:19897030-19897110 7.03e-01 80 chr19:17861964-17862044 1.85e-02 80 chr8:41653693-41653773 2.76e-04 23_[+5(1.24e-05)]_15_[+4(3.27e-05)]_\ 26 chr1:40626649-40626729 2.26e-01 80 chr17:19091382-19091462 2.27e-02 80 chr17:1933391-1933471 1.96e-01 80 chr6:10464049-10464129 5.62e-01 80 chr6:147542995-147543075 7.24e-03 52_[+1(8.93e-05)]_20 chr7:152126195-152126275 5.77e-01 80 chr19:14116266-14116346 9.95e-01 80 chr7:100178113-100178193 7.57e-01 80 chr22:21951213-21951293 2.81e-02 80 chr20:31162162-31162242 1.17e-01 80 chr6:3777261-3777341 1.08e-02 16_[+2(1.70e-05)]_14_[+2(1.70e-05)]_\ 1_[+2(3.29e-05)]_5_[+2(1.70e-05)]_12 chr19:45945835-45945915 4.70e-01 80 chr22:19804139-19804219 7.65e-01 80 chr2:61244633-61244713 1.52e-02 36_[+1(8.93e-05)]_36 chr1:8852107-8852187 1.38e-01 80 chr22:20823521-20823601 1.68e-01 80 chr3:70965646-70965726 2.58e-01 80 chr3:14451873-14451953 3.12e-01 80 chr3:32535354-32535434 3.76e-01 80 chr5:172192954-172193034 7.25e-04 17_[+3(1.41e-05)]_55 chr10:82418356-82418436 3.76e-04 10_[+1(1.43e-05)]_16_[+2(1.70e-05)]_\ [+1(2.99e-05)]_[+1(2.99e-05)]_22 chr16:68279011-68279091 9.15e-01 80 chr17:80296579-80296659 2.70e-02 1_[+4(6.87e-05)]_71 chr1:142834565-142834645 2.38e-02 80 chr17:41869121-41869201 8.56e-01 80 chr6:17962482-17962562 9.82e-03 42_[+4(6.87e-05)]_30 chr20:48895942-48896022 2.11e-02 80 chr6:161459039-161459119 3.69e-03 47_[+3(7.47e-05)]_25 chr10:75518580-75518660 2.50e-03 29_[+2(1.70e-05)]_[+2(1.70e-05)]_35 chr10:51488747-51488827 3.52e-01 25_[+4(6.87e-05)]_23_[+4(6.87e-05)]_\ 16 chr12:118810846-11881092 9.99e-01 80 chr1:28692967-28693047 2.22e-03 15_[+3(1.41e-05)]_57 chr10:47059239-47059319 6.68e-01 80 chr11:74816175-74816255 6.96e-01 80 chr9:137216365-137216445 3.36e-01 80 chr19:41283041-41283121 4.70e-02 61_[+3(2.61e-05)]_11 chr5:180097357-180097437 1.14e-02 2_[+2(8.62e-05)]_6_[+2(8.62e-05)]_6_\ [+2(1.70e-05)]_10_[+2(1.70e-05)]_10_[+2(8.62e-05)]_6 chr6:44093648-44093728 9.22e-02 80 chr19:8139621-8139701 1.71e-02 47_[+3(2.61e-05)]_25 chr11:46615591-46615671 9.72e-01 80 chr19:13093535-13093615 1.50e-04 20_[+3(3.93e-05)]_2_[+5(2.30e-05)]_\ 29_[+5(8.70e-05)]_5 chr19:10542044-10542124 2.39e-02 72_[+2(3.29e-05)] chr11:5256719-5256799 3.68e-01 72_[+4(6.87e-05)] chr1:228538325-228538405 2.14e-04 7_[+3(3.93e-05)]_8_[+3(3.93e-05)]_\ [+3(3.93e-05)]_12_[+3(3.93e-05)]_8_[+5(8.70e-05)]_5 chr1:156739138-156739218 5.88e-02 80 chr8:99819994-99820074 5.13e-01 80 chr22:22927398-22927478 6.11e-03 13_[+3(7.47e-05)]_59 chr19:11676405-11676485 1.54e-01 69_[+5(9.62e-05)]_3 chr16:81610990-81611070 4.83e-01 80 chr15:41408526-41408606 8.08e-01 80 chr7:73140584-73140664 1.27e-03 4_[+1(6.08e-05)]_12_[+1(2.99e-05)]_\ 20_[+2(1.70e-05)]_2_[+2(1.70e-05)]_10 chr19:18451154-18451234 3.76e-01 80 chr14:31889924-31890004 7.06e-01 80 chr12:104882274-10488235 2.89e-03 13_[+2(1.70e-05)]_4_[+1(2.99e-05)]_\ 4_[+2(8.62e-05)]_12_[+2(1.70e-05)]_15 chr11:10771253-10771333 6.05e-04 26_[+1(1.43e-05)]_46 chrX:135851138-135851218 2.58e-01 80 chr19:1701025-1701105 8.82e-05 15_[+3(3.93e-05)]_31_[+1(1.43e-05)]_\ 4_[+1(4.52e-05)]_6 chr7:106417182-106417262 5.66e-01 80 chr7:120688530-120688610 1.31e-01 80 chr19:11646644-11646724 5.30e-01 80 chr1:234720592-234720672 6.03e-02 80 chr1:4067769-4067849 1.41e-01 2_[+4(1.71e-05)]_23_[+4(1.71e-05)]_\ 16_[+4(1.71e-05)]_15 chr1:212937805-212937885 7.87e-01 80 chr1:92270006-92270086 6.44e-04 67_[+1(1.43e-05)]_5 chr7:77561828-77561908 1.10e-01 64_[+4(6.87e-05)]_8 chr9:117160438-117160518 2.47e-01 80 chr8:30013865-30013945 7.78e-01 80 chr20:16710585-16710665 5.97e-01 80 chr1:142817067-142817147 1.87e-02 56_[+5(8.70e-05)]_16 chr12:121021688-12102176 5.75e-01 80 chr5:153125551-153125631 3.69e-02 9_[+5(3.73e-05)]_9_[+5(1.24e-05)]_\ 46 chr22:18359822-18359902 1.00e+00 80 chr2:10611253-10611333 3.53e-01 80 chr1:207097620-207097700 1.08e-02 [+2(1.70e-05)]_17_[+2(1.70e-05)]_12_\ [+2(1.70e-05)]_17_[+2(1.70e-05)]_2 chr1:16471248-16471328 6.38e-02 80 chr1:109740248-109740328 2.96e-03 63_[+2(1.70e-05)]_[+2(1.70e-05)]_1 chr1:156663324-156663404 1.74e-07 9_[+2(1.70e-05)]_18_[+1(1.43e-05)]_\ 24_[+3(1.41e-05)]_5 chr19:1668225-1668305 4.00e-04 5_[+5(8.70e-05)]_8_[+1(8.93e-05)]_\ 12_[+1(8.93e-05)]_2_[+1(8.93e-05)]_4_[+1(8.93e-05)]_9 chr15:27597127-27597207 1.14e-02 7_[+2(1.70e-05)]_41_[+2(1.70e-05)]_\ 16 chr22:20776628-20776708 8.48e-05 18_[+2(1.70e-05)]_12_[+3(3.93e-05)]_\ 14_[+2(1.70e-05)]_12 chr14:23751806-23751886 3.68e-01 80 chr7:73081762-73081842 2.07e-01 25_[+5(3.73e-05)]_47 chr12:125360936-12536101 2.47e-01 53_[+4(3.27e-05)]_19 chr1:31249117-31249197 1.00e+00 80 chr6:11491493-11491573 1.11e-02 [+2(8.62e-05)]_8_[+2(1.70e-05)]_15_\ [+2(1.70e-05)]_33 chr1:2473407-2473487 3.35e-02 6_[+2(6.76e-05)]_66 chr6:37788813-37788893 7.76e-02 80 chr6:161795272-161795352 1.12e-02 25_[+2(1.70e-05)]_11_[+2(1.70e-05)]_\ 28 chr1:1832493-1832573 5.58e-02 80 chr17:29635584-29635664 2.51e-03 80 chr19:3706123-3706203 5.44e-02 80 chr2:44396827-44396907 8.43e-04 53_[+3(1.41e-05)]_19 chr3:47018486-47018566 5.89e-01 80 chr3:5056938-5057018 7.72e-02 18_[+4(1.71e-05)]_54 chr3:53290314-53290394 8.89e-02 33_[+5(3.73e-05)]_39 chr10:75011844-75011924 4.07e-02 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n06.farnam.hpc.yale.internal ********************************************************************************