******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/NCOA2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr4:111005443-111005523 1.0000 80 chr16:30156404-30156484 1.0000 80 chr22:21682083-21682163 1.0000 80 chr7:148642162-148642242 1.0000 80 chr6:82450476-82450556 1.0000 80 chr10:78376603-78376683 1.0000 80 chr5:10345016-10345096 1.0000 80 chr20:2890756-2890836 1.0000 80 chr16:7982587-7982667 1.0000 80 chr10:21350269-21350349 1.0000 80 chr22:18716249-18716329 1.0000 80 chr22:18718779-18718859 1.0000 80 chr17:38006577-38006657 1.0000 80 chr2:47483049-47483129 1.0000 80 chrX:102743876-102743956 1.0000 80 chr1:109066587-109066667 1.0000 80 chr17:38012321-38012401 1.0000 80 chr12:57887006-57887086 1.0000 80 chr11:33901755-33901835 1.0000 80 chrX:40822377-40822457 1.0000 80 chr10:17596935-17597015 1.0000 80 chr22:22605915-22605995 1.0000 80 chr19:39352184-39352264 1.0000 80 chr6:44358799-44358879 1.0000 80 chr7:4818924-4819004 1.0000 80 chr15:80297832-80297912 1.0000 80 chr19:13487494-13487574 1.0000 80 chr6:70631127-70631207 1.0000 80 chr7:112436793-112436873 1.0000 80 chr22:20659471-20659551 1.0000 80 chr11:86018474-86018554 1.0000 80 chr9:3504589-3504669 1.0000 80 chr5:105723634-105723714 1.0000 80 chr21:18344188-18344268 1.0000 80 chr1:161513363-161513443 1.0000 80 chr12:95542419-95542499 1.0000 80 chr12:113889458-11388953 1.0000 80 chr16:7026883-7026963 1.0000 80 chr16:52374296-52374376 1.0000 80 chr1:192320839-192320919 1.0000 80 chr11:47580406-47580486 1.0000 80 chr12:10588586-10588666 1.0000 80 chrX:124412621-124412701 1.0000 80 chr2:119625674-119625754 1.0000 80 chr2:43742545-43742625 1.0000 80 chr19:6700069-6700149 1.0000 80 chr16:67374712-67374792 1.0000 80 chr6:132013888-132013968 1.0000 80 chr19:39093670-39093750 1.0000 80 chr6:158590800-158590880 1.0000 80 chr17:63201932-63202012 1.0000 80 chr1:105412768-105412848 1.0000 80 chr7:75293578-75293658 1.0000 80 chr7:67874015-67874095 1.0000 80 chr1:201936019-201936099 1.0000 80 chr8:19092177-19092257 1.0000 80 chrX:3571779-3571859 1.0000 80 chr11:60372540-60372620 1.0000 80 chr16:48951715-48951795 1.0000 80 chr3:101441813-101441893 1.0000 80 chrX:128199987-128200067 1.0000 80 chr2:174642311-174642391 1.0000 80 chr3:23195465-23195545 1.0000 80 chr2:144300362-144300442 1.0000 80 chr10:66313285-66313365 1.0000 80 chr17:62721238-62721318 1.0000 80 chr15:41491969-41492049 1.0000 80 chr7:144889810-144889890 1.0000 80 chr7:20318480-20318560 1.0000 80 chr14:68278570-68278650 1.0000 80 chr8:106895174-106895254 1.0000 80 chr19:10553536-10553616 1.0000 80 chr2:85235520-85235600 1.0000 80 chr8:130497816-130497896 1.0000 80 chr16:87329042-87329122 1.0000 80 chr17:53802938-53803018 1.0000 80 chr7:104727452-104727532 1.0000 80 chr18:1721067-1721147 1.0000 80 chr1:193131488-193131568 1.0000 80 chr15:83899110-83899190 1.0000 80 chr7:144478176-144478256 1.0000 80 chr6:27727764-27727844 1.0000 80 chr10:7686484-7686564 1.0000 80 chr10:54594282-54594362 1.0000 80 chr4:174405818-174405898 1.0000 80 chr16:10970926-10971006 1.0000 80 chr1:231188339-231188419 1.0000 80 chr8:11145465-11145545 1.0000 80 chr12:10562168-10562248 1.0000 80 chr6:27068856-27068936 1.0000 80 chr10:52320276-52320356 1.0000 80 chr4:12110839-12110919 1.0000 80 chr8:17677364-17677444 1.0000 80 chr18:34343348-34343428 1.0000 80 chr7:106731082-106731162 1.0000 80 chr17:76638950-76639030 1.0000 80 chr17:35736069-35736149 1.0000 80 chr9:34379662-34379742 1.0000 80 chr1:195541009-195541089 1.0000 80 chr8:1845558-1845638 1.0000 80 chr11:8625613-8625693 1.0000 80 chrX:3432081-3432161 1.0000 80 chr22:20324211-20324291 1.0000 80 chr19:38527915-38527995 1.0000 80 chr21:33788424-33788504 1.0000 80 chrX:102490714-102490794 1.0000 80 chr1:10248366-10248446 1.0000 80 chr8:54859812-54859892 1.0000 80 chrX:88682072-88682152 1.0000 80 chr16:16728408-16728488 1.0000 80 chr18:28338189-28338269 1.0000 80 chr2:167057873-167057953 1.0000 80 chr15:75269759-75269839 1.0000 80 chr2:173486440-173486520 1.0000 80 chr20:47463138-47463218 1.0000 80 chr3:40603411-40603491 1.0000 80 chrX:129205944-129206024 1.0000 80 chrX:2387444-2387524 1.0000 80 chr15:49399915-49399995 1.0000 80 chrX:2397217-2397297 1.0000 80 chr8:103606794-103606874 1.0000 80 chr4:174404123-174404203 1.0000 80 chr6:27238253-27238333 1.0000 80 chr8:23332913-23332993 1.0000 80 chr3:169707740-169707820 1.0000 80 chr17:45335117-45335197 1.0000 80 chr7:68316297-68316377 1.0000 80 chr15:83899740-83899820 1.0000 80 chr19:38646302-38646382 1.0000 80 chr4:123637759-123637839 1.0000 80 chr8:130689968-130690048 1.0000 80 chr17:39662448-39662528 1.0000 80 chr2:201675983-201676063 1.0000 80 chr6:44174370-44174450 1.0000 80 chr3:170540432-170540512 1.0000 80 chr2:134877435-134877515 1.0000 80 chr1:40538835-40538915 1.0000 80 chr19:17819059-17819139 1.0000 80 chr10:104953152-10495323 1.0000 80 chr10:127809483-12780956 1.0000 80 chrX:2386832-2386912 1.0000 80 chr12:57887800-57887880 1.0000 80 chr1:9749336-9749416 1.0000 80 chr6:99878621-99878701 1.0000 80 chr7:150974313-150974393 1.0000 80 chr6:4380342-4380422 1.0000 80 chr2:229128556-229128636 1.0000 80 chr5:86217359-86217439 1.0000 80 chrX:9281434-9281514 1.0000 80 chr19:6700773-6700853 1.0000 80 chr12:131328349-13132842 1.0000 80 chr13:115017457-11501753 1.0000 80 chr10:94270503-94270583 1.0000 80 chr10:53313866-53313946 1.0000 80 chr8:29523871-29523951 1.0000 80 chr20:48330621-48330701 1.0000 80 chr15:46320763-46320843 1.0000 80 chr1:118861841-118861921 1.0000 80 chr21:17116048-17116128 1.0000 80 chr16:68122198-68122278 1.0000 80 chr22:30821655-30821735 1.0000 80 chr7:11220314-11220394 1.0000 80 chr10:120851675-12085175 1.0000 80 chr10:1015835-1015915 1.0000 80 chr20:52485753-52485833 1.0000 80 chr1:59196346-59196426 1.0000 80 chrX:199505-199585 1.0000 80 chr20:56048690-56048770 1.0000 80 chr15:63654669-63654749 1.0000 80 chr4:79503005-79503085 1.0000 80 chrX:2393556-2393636 1.0000 80 chr3:128263615-128263695 1.0000 80 chr3:65596832-65596912 1.0000 80 chr21:9705192-9705272 1.0000 80 chr6:18888269-18888349 1.0000 80 chrX:2382121-2382201 1.0000 80 chr17:66067505-66067585 1.0000 80 chr11:64794793-64794873 1.0000 80 chr17:77062030-77062110 1.0000 80 chr17:21792997-21793077 1.0000 80 chr21:46222576-46222656 1.0000 80 chr5:78804757-78804837 1.0000 80 chr19:17819638-17819718 1.0000 80 chr2:61034383-61034463 1.0000 80 chr1:236202039-236202119 1.0000 80 chr5:141405673-141405753 1.0000 80 chr4:163685117-163685197 1.0000 80 chr17:30570481-30570561 1.0000 80 chr2:86095160-86095240 1.0000 80 chr19:55236313-55236393 1.0000 80 chr1:236517868-236517948 1.0000 80 chr7:29789750-29789830 1.0000 80 chr8:37356597-37356677 1.0000 80 chr14:24583564-24583644 1.0000 80 chr17:76971191-76971271 1.0000 80 chr3:67068637-67068717 1.0000 80 chr3:165659268-165659348 1.0000 80 chr17:30228096-30228176 1.0000 80 chr5:162885986-162886066 1.0000 80 chr1:27125982-27126062 1.0000 80 chr17:47100168-47100248 1.0000 80 chr6:16189078-16189158 1.0000 80 chr1:145575953-145576033 1.0000 80 chr5:78474572-78474652 1.0000 80 chr19:56159382-56159462 1.0000 80 chr19:18439578-18439658 1.0000 80 chrX:66719784-66719864 1.0000 80 chr12:56635660-56635740 1.0000 80 chr7:116671463-116671543 1.0000 80 chr10:88511487-88511567 1.0000 80 chrX:2397418-2397498 1.0000 80 chr8:20362239-20362319 1.0000 80 chr10:133741892-13374197 1.0000 80 chr5:21833609-21833689 1.0000 80 chr11:76494112-76494192 1.0000 80 chr12:6387230-6387310 1.0000 80 chr7:106412635-106412715 1.0000 80 chr13:50783082-50783162 1.0000 80 chr2:153786319-153786399 1.0000 80 chr21:35123591-35123671 1.0000 80 chrX:2375392-2375472 1.0000 80 chr6:28370147-28370227 1.0000 80 chr10:106117649-10611772 1.0000 80 chr8:12417697-12417777 1.0000 80 chr1:59197003-59197083 1.0000 80 chr8:116547437-116547517 1.0000 80 chr16:86825069-86825149 1.0000 80 chr5:415658-415738 1.0000 80 chr10:115323068-11532314 1.0000 80 chr14:77647903-77647983 1.0000 80 chr19:925535-925615 1.0000 80 chr15:42894944-42895024 1.0000 80 chr19:51894427-51894507 1.0000 80 chr11:123986014-12398609 1.0000 80 chr6:13847121-13847201 1.0000 80 chr2:85788900-85788980 1.0000 80 chr14:20705338-20705418 1.0000 80 chr12:1788738-1788818 1.0000 80 chr3:127309491-127309571 1.0000 80 chr16:17962719-17962799 1.0000 80 chr12:8085973-8086053 1.0000 80 chr3:16445893-16445973 1.0000 80 chr1:151689411-151689491 1.0000 80 chr12:217201-217281 1.0000 80 chrX:2392814-2392894 1.0000 80 chr1:76351519-76351599 1.0000 80 chr15:43398212-43398292 1.0000 80 chr2:58364081-58364161 1.0000 80 chr7:27882030-27882110 1.0000 80 chr6:53480636-53480716 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_NCOA2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/NCOA2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.351 C 0.151 G 0.153 T 0.345 Background letter frequencies (from file dataset with add-one prior applied): A 0.351 C 0.152 G 0.153 T 0.345 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF YATATATR MEME-1 width = 8 sites = 149 llr = 1076 E-value = 5.3e-092 ******************************************************************************** -------------------------------------------------------------------------------- Motif YATATATR MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1a:a:a:4 pos.-specific C 4::::::: probability G :::::::5 matrix T 5:a:a:a1 bits 2.7 2.5 2.2 1.9 Relative 1.6 **** * Entropy 1.4 ****** (10.4 bits) 1.1 ****** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TATATATG consensus C A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YATATATR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:58364081-58364161 2 4.13e-05 t catatatg tgtatatata chr10:106117649-10611772 67 4.13e-05 catatataca catatatg tacaca chr2:153786319-153786399 18 4.13e-05 tcacacatca catatatg cagcatatca chr7:116671463-116671543 60 4.13e-05 catatatatg catatatg tgtgtatatg chr3:128263615-128263695 46 4.13e-05 TATGCATATT CATATATG CCATATATAA chr10:94270503-94270583 67 4.13e-05 atacatatca catatatg atatat chrX:9281434-9281514 69 4.13e-05 cagaaatttg catatatg atca chr2:173486440-173486520 56 4.13e-05 tcatatatgt catatatg tttatatctc chr18:28338189-28338269 10 4.13e-05 atacaCACA Catatatg tatatatata chrX:88682072-88682152 52 4.13e-05 tatggcatat catatatg gcatataata chr22:20324211-20324291 29 4.13e-05 aatggtatat catatatg atataaatgg chr6:27068856-27068936 47 4.13e-05 tatatcatat catatatg atatataata chr10:54594282-54594362 54 4.13e-05 tcatatatat catatatg tcatgtaata chr14:68278570-68278650 3 4.13e-05 aa catatatg aaatttatga chr2:174642311-174642391 39 4.13e-05 taaaatatat catatatg atagatataa chr7:75293578-75293658 25 4.13e-05 tatatacaca catatatg tatgtatata chr16:52374296-52374376 38 4.13e-05 atattataga catatatg taatatataa chr16:7026883-7026963 5 4.13e-05 atca catatatg gtgtatatca chr22:20659471-20659551 21 4.13e-05 atatatgtca catatatg taatatatgt chr6:70631127-70631207 5 4.13e-05 tatc catatatg tcatatatca chr10:17596935-17597015 73 4.13e-05 tgtcacatat catatatg chrX:40822377-40822457 9 4.13e-05 tataatat catatatg atatatgata chr1:109066587-109066667 35 4.13e-05 atatgtgaca catatatg tgacatatat chr22:18716249-18716329 55 4.13e-05 gatgataaat catatatg atatagatga chr22:21682083-21682163 55 4.13e-05 ccgtgtatat catatatg atatatcgtg chr4:111005443-111005523 50 4.13e-05 atatatatca catatatg atatatgata chr1:76351519-76351599 53 1.35e-04 tagtatatat tatatatg atgtattatt chr16:17962719-17962799 71 1.35e-04 CATCCtatat tatatatg at chr12:1788738-1788818 50 1.35e-04 tataatttat tatatatg ttatatataa chr7:106412635-106412715 25 1.35e-04 atatattata tatatatG atggaacact chr6:16189078-16189158 73 1.35e-04 atgcatatga tatatatg chr3:165659268-165659348 60 1.35e-04 ttatatatgg tatatatg attatgatat chr4:163685117-163685197 61 1.35e-04 tgaaatatca tatatatg aaatatatga chr5:141405673-141405753 61 1.35e-04 tatcatatca tatatatg atatattgta chr17:77062030-77062110 71 1.35e-04 atatacacca tatatatg at chr6:18888269-18888349 63 1.35e-04 atatacatga tatatatg tctatatgat chr3:65596832-65596912 33 1.35e-04 ACACATATGG TATATATG TGTGTATACA chrX:199505-199585 67 1.35e-04 atgtctatat tatatatg tatata chr20:52485753-52485833 44 1.35e-04 tagtacatac tatatatg tatcatatat chr15:46320763-46320843 57 1.35e-04 tGACTTACGC TATATATG ATTATATGAT chr8:29523871-29523951 71 1.35e-04 ttaaagttat tatatATG GT chr15:83899740-83899820 27 1.35e-04 tagtatactg tatatatg gtatatatat chr3:169707740-169707820 26 1.35e-04 tatatatgaa tatatatg atatatagat chr6:27238253-27238333 70 1.35e-04 atgtatgaga tatatatg ata chr15:75269759-75269839 15 1.35e-04 tataacacat tatatatg ttatatatat chr16:16728408-16728488 29 1.35e-04 tattctatag tatatatg atatacatac chr8:54859812-54859892 69 1.35e-04 gtatatatat tatatatg ctat chr17:76638950-76639030 30 1.35e-04 ttatatataa tatatatg taatatgtta chr8:11145465-11145545 13 1.35e-04 tactatgtat tatatatg tattatataa chr1:231188339-231188419 4 1.35e-04 tta tatatatg taatacatat chr10:7686484-7686564 20 1.35e-04 atatatcaca tatatatg atatatcaca chr7:144478176-144478256 17 1.35e-04 tattatatat tatatatg taatatgtaa chr2:85235520-85235600 27 1.35e-04 tattatgtga tatatatg atatatacat chr8:106895174-106895254 19 1.35e-04 agtatacaaa tatatatg atataagata chr15:41491969-41492049 32 1.35e-04 tcatatatat tatatatg tcatatatag chr2:144300362-144300442 46 1.35e-04 acatatatag tatatatg atatatataa chrX:128199987-128200067 65 1.35e-04 tacactatat tataTATG CAAtatat chr8:19092177-19092257 55 1.35e-04 ttacatatat tatatatg tgatatatat chr1:201936019-201936099 60 1.35e-04 tgttatgtat tatatatg ttatatatta chr1:105412768-105412848 66 1.35e-04 atatatatga tatatatg atatatg chr6:132013888-132013968 52 1.35e-04 aatatgtagt tatatatg atatatgata chr1:192320839-192320919 19 1.35e-04 acacatataa tatatatg ctatatagca chr12:113889458-11388953 66 1.35e-04 tattatataa tatatatg acatata chr19:13487494-13487574 48 1.35e-04 taatatatgt tatatatg atatatataa chr7:4818924-4819004 33 1.35e-04 cataacacgt tatatatg atatataaca chr2:47483049-47483129 73 1.35e-04 atatatggga tatatatg chr17:38006577-38006657 42 1.35e-04 tatagcatat tatatatg tatatataat chr20:2890756-2890836 70 1.35e-04 tgacgtatag tatatatg ata chr10:78376603-78376683 3 1.35e-04 at tatatatg taatatgtaa chr7:148642162-148642242 65 1.35e-04 tattatatag tatatatg atatggta chr8:116547437-116547517 66 2.30e-04 atatatatag catatata gcatata chr8:12417697-12417777 54 2.30e-04 tatatgtgta catatata cacgtatgtg chr8:20362239-20362319 49 2.30e-04 TGTTAGCata catatata atatataata chr5:78474572-78474652 1 2.30e-04 . catatata tcacatatat chr1:236202039-236202119 56 2.30e-04 ctatataggt catatata atatatatta chr19:17819638-17819718 22 2.30e-04 atacatatta catatata acatataata chr16:68122198-68122278 67 2.30e-04 atataaaata catatata tttaca chr8:17677364-17677444 27 2.30e-04 tgttatataa catatata atatacgtat chr4:12110839-12110919 55 2.30e-04 tgatatatat catatata gcgcatatga chr10:52320276-52320356 49 2.30e-04 tattatatga catatata cataatacaa chr15:83899110-83899190 41 2.30e-04 ccgtatatag catatata ctgtatatac chr7:104727452-104727532 51 2.30e-04 atatatatag catatata atatataata chr19:10553536-10553616 59 2.30e-04 ATTGCATATG CATATATA ATACTAGCAA chr7:144889810-144889890 3 2.30e-04 aa catatata taacatataa chr3:101441813-101441893 62 2.30e-04 aaatatataa catatata atatataata chr16:48951715-48951795 57 2.30e-04 taatatataa catatata tcatatatta chr11:60372540-60372620 62 2.30e-04 tcatatatat catatata ttatatatca chr19:39093670-39093750 59 2.30e-04 tacacatgta catatata cacatgtaca chr2:119625674-119625754 53 2.30e-04 ttatatataa catatata atatgtaaca chr19:39352184-39352264 37 2.30e-04 tatagcatat catatata gtatatataa chr11:33901755-33901835 6 2.30e-04 tatat catatata cacatgatat chrX:102743876-102743956 35 2.30e-04 ttatatattg catatata atatatgtta chr22:18718779-18718859 42 2.30e-04 taataaatga catatata atatatgata chr16:7982587-7982667 59 2.30e-04 tcatatatat catatata tcatatatca chr5:10345016-10345096 70 2.30e-04 taacatataa catatata ata chr16:30156404-30156484 8 2.30e-04 catatat catatata atatatgtga chr3:16445893-16445973 3 4.45e-04 aa tatatata caatatataa chr1:59196346-59196426 72 4.45e-04 tactatatag tatatata C chr7:11220314-11220394 3 4.45e-04 aa tatatata acatattata chr12:131328349-13132842 71 4.45e-04 gtatactacg tatatata gt chr5:86217359-86217439 12 4.45e-04 tattatatgc tatatata gtatatacta chr2:229128556-229128636 56 4.45e-04 tgcaatatgt tatatata ttatatgcaa chr19:17819059-17819139 53 4.45e-04 caatatatag tatatata ctatattata chr4:123637759-123637839 70 4.45e-04 cacatatgtg tatatata cac chr8:103606794-103606874 72 4.45e-04 tacaatatat tatatata a chr2:167057873-167057953 66 4.45e-04 atgcatatac tatatata gtataga chr1:10248366-10248446 2 4.45e-04 a tatatata taggggttta chr18:34343348-34343428 55 4.45e-04 ttatacacgt tatatata atatgcgtat chr1:193131488-193131568 17 4.45e-04 agtgtatata tatatata CACATATGAa chr17:62721238-62721318 19 4.45e-04 taatatatat tatatata aaatgtatgt chr10:66313285-66313365 10 4.45e-04 tgcatgtaa tatatata atatgtatgc chrX:3571779-3571859 2 4.45e-04 a tatatata atatactatg chr6:158590800-158590880 62 4.45e-04 taaaagtgtg tatatata taCACACACA chr2:43742545-43742625 1 4.45e-04 . tatatata cacacacaca chrX:124412621-124412701 72 4.45e-04 atgtcatatt tatatata t chr11:47580406-47580486 18 4.45e-04 taatataatg tatatata atatataatt chr12:95542419-95542499 41 4.45e-04 tatgttatat tatatata ttatatatta chr5:105723634-105723714 67 4.45e-04 tCACGcatat tatatata ttttat chr22:22605915-22605995 16 4.45e-04 gtatatatat tatatata cacatacata chr12:57887006-57887086 72 4.45e-04 GTTTTGAGta tatatata t chr5:21833609-21833689 13 4.63e-04 taatatatgg catatgtg atatgtcata chr10:88511487-88511567 64 4.63e-04 catatgcgca catatgtg tgcacacat chr1:118861841-118861921 57 5.56e-04 taatatataa catatatt gtatacgtta chr10:127809483-12780956 72 5.56e-04 tgcaatatag catatatt a chr15:49399915-49399995 20 5.56e-04 tatatgtata catatatt atacgtatat chrX:3432081-3432161 28 5.56e-04 atgtatatgt catatatt atacagtata chr1:59197003-59197083 6 6.51e-04 tatat aatatatg taataatgta chrX:66719784-66719864 60 6.51e-04 tgttacatgt aatatatg caatatattg chr8:130497816-130497896 70 6.51e-04 tattatctat aatatatg taa chr15:80297832-80297912 53 6.51e-04 tatagtgtat aatatatg gtatatacca chr10:21350269-21350349 14 6.51e-04 tatgttacat aatatatg ggtcagattt chr10:53313866-53313946 53 6.92e-04 gtgtatatat tatatgtg cgtatgtgat chr1:195541009-195541089 71 6.92e-04 tatcatatat tatatgtg at chr3:23195465-23195545 67 7.33e-04 ttatatacga catatatc atacat chr14:20705338-20705418 66 9.45e-04 aaatatgtac tatatatt acatgtg chr17:66067505-66067585 68 9.45e-04 atatataaaa tatatatt acata chr19:6700773-6700853 40 9.45e-04 aatatataat tatatatt ataattataa chr4:174404123-174404203 15 9.45e-04 tataatatat tatatatt tcatatgtat chr4:174405818-174405898 21 9.45e-04 taatatatat tatatatt atatgcatat chr9:3504589-3504669 73 9.45e-04 tgccatatgg tatatatt chr11:86018474-86018554 49 9.45e-04 atatatcaaa tatatatt atgtgtagta chr6:44358799-44358879 71 9.45e-04 tttaatatgt tatatatt at chr7:20318480-20318560 64 1.04e-03 atttatataa tatatatc atttatata chr7:112436793-112436873 53 1.04e-03 taatatataa tatatatc atgtaatata chr16:67374712-67374792 52 1.30e-03 tactctatag aatatata ctacatatac chr17:38012321-38012401 35 1.39e-03 atgtatattg tatatgta CAATATAACA chr18:1721067-1721147 41 1.71e-03 tacgtatacc aatatatt aaatattata chr21:18344188-18344268 33 1.89e-03 tacataacat aatatatc ttacatatta chr6:82450476-82450556 50 2.03e-03 tatactatat aatatgta tcatattata -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YATATATR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:58364081-58364161 4.1e-05 1_[+1]_71 chr10:106117649-10611772 4.1e-05 66_[+1]_6 chr2:153786319-153786399 4.1e-05 17_[+1]_55 chr7:116671463-116671543 4.1e-05 59_[+1]_13 chr3:128263615-128263695 4.1e-05 45_[+1]_27 chr10:94270503-94270583 4.1e-05 66_[+1]_6 chrX:9281434-9281514 4.1e-05 68_[+1]_4 chr2:173486440-173486520 4.1e-05 55_[+1]_17 chr18:28338189-28338269 4.1e-05 9_[+1]_63 chrX:88682072-88682152 4.1e-05 51_[+1]_21 chr22:20324211-20324291 4.1e-05 28_[+1]_44 chr6:27068856-27068936 4.1e-05 46_[+1]_26 chr10:54594282-54594362 4.1e-05 53_[+1]_19 chr14:68278570-68278650 4.1e-05 2_[+1]_70 chr2:174642311-174642391 4.1e-05 38_[+1]_34 chr7:75293578-75293658 4.1e-05 24_[+1]_48 chr16:52374296-52374376 4.1e-05 37_[+1]_35 chr16:7026883-7026963 4.1e-05 4_[+1]_68 chr22:20659471-20659551 4.1e-05 20_[+1]_52 chr6:70631127-70631207 4.1e-05 4_[+1]_68 chr10:17596935-17597015 4.1e-05 72_[+1] chrX:40822377-40822457 4.1e-05 8_[+1]_64 chr1:109066587-109066667 4.1e-05 34_[+1]_38 chr22:18716249-18716329 4.1e-05 54_[+1]_18 chr22:21682083-21682163 4.1e-05 54_[+1]_18 chr4:111005443-111005523 4.1e-05 49_[+1]_23 chr1:76351519-76351599 0.00014 52_[+1]_20 chr16:17962719-17962799 0.00014 70_[+1]_2 chr12:1788738-1788818 0.00014 49_[+1]_23 chr7:106412635-106412715 0.00014 24_[+1]_48 chr6:16189078-16189158 0.00014 72_[+1] chr3:165659268-165659348 0.00014 59_[+1]_13 chr4:163685117-163685197 0.00014 60_[+1]_12 chr5:141405673-141405753 0.00014 60_[+1]_12 chr17:77062030-77062110 0.00014 70_[+1]_2 chr6:18888269-18888349 0.00014 62_[+1]_10 chr3:65596832-65596912 0.00014 32_[+1]_40 chrX:199505-199585 0.00014 66_[+1]_6 chr20:52485753-52485833 0.00014 43_[+1]_29 chr15:46320763-46320843 0.00014 56_[+1]_16 chr8:29523871-29523951 0.00014 70_[+1]_2 chr15:83899740-83899820 0.00014 26_[+1]_46 chr3:169707740-169707820 0.00014 25_[+1]_47 chr6:27238253-27238333 0.00014 69_[+1]_3 chr15:75269759-75269839 0.00014 14_[+1]_58 chr16:16728408-16728488 0.00014 28_[+1]_44 chr8:54859812-54859892 0.00014 68_[+1]_4 chr17:76638950-76639030 0.00014 29_[+1]_43 chr8:11145465-11145545 0.00014 12_[+1]_60 chr1:231188339-231188419 0.00014 3_[+1]_69 chr10:7686484-7686564 0.00014 19_[+1]_53 chr7:144478176-144478256 0.00014 16_[+1]_56 chr2:85235520-85235600 0.00014 26_[+1]_46 chr8:106895174-106895254 0.00014 18_[+1]_54 chr15:41491969-41492049 0.00014 31_[+1]_41 chr2:144300362-144300442 0.00014 45_[+1]_27 chrX:128199987-128200067 0.00014 64_[+1]_8 chr8:19092177-19092257 0.00014 54_[+1]_18 chr1:201936019-201936099 0.00014 59_[+1]_13 chr1:105412768-105412848 0.00014 65_[+1]_7 chr6:132013888-132013968 0.00014 51_[+1]_21 chr1:192320839-192320919 0.00014 18_[+1]_54 chr12:113889458-11388953 0.00014 65_[+1]_7 chr19:13487494-13487574 0.00014 47_[+1]_25 chr7:4818924-4819004 0.00014 32_[+1]_40 chr2:47483049-47483129 0.00014 72_[+1] chr17:38006577-38006657 0.00014 41_[+1]_31 chr20:2890756-2890836 0.00014 69_[+1]_3 chr10:78376603-78376683 0.00014 2_[+1]_70 chr7:148642162-148642242 0.00014 64_[+1]_8 chr8:116547437-116547517 0.00023 65_[+1]_7 chr8:12417697-12417777 0.00023 53_[+1]_19 chr8:20362239-20362319 0.00023 48_[+1]_24 chr5:78474572-78474652 0.00023 [+1]_72 chr1:236202039-236202119 0.00023 55_[+1]_17 chr19:17819638-17819718 0.00023 21_[+1]_51 chr16:68122198-68122278 0.00023 66_[+1]_6 chr8:17677364-17677444 0.00023 26_[+1]_46 chr4:12110839-12110919 0.00023 54_[+1]_18 chr10:52320276-52320356 0.00023 48_[+1]_24 chr15:83899110-83899190 0.00023 40_[+1]_32 chr7:104727452-104727532 0.00023 50_[+1]_22 chr19:10553536-10553616 0.00023 58_[+1]_14 chr7:144889810-144889890 0.00023 2_[+1]_70 chr3:101441813-101441893 0.00023 61_[+1]_11 chr16:48951715-48951795 0.00023 56_[+1]_16 chr11:60372540-60372620 0.00023 61_[+1]_11 chr19:39093670-39093750 0.00023 58_[+1]_14 chr2:119625674-119625754 0.00023 52_[+1]_20 chr19:39352184-39352264 0.00023 36_[+1]_36 chr11:33901755-33901835 0.00023 5_[+1]_67 chrX:102743876-102743956 0.00023 34_[+1]_38 chr22:18718779-18718859 0.00023 41_[+1]_31 chr16:7982587-7982667 0.00023 58_[+1]_14 chr5:10345016-10345096 0.00023 69_[+1]_3 chr16:30156404-30156484 0.00023 7_[+1]_65 chr3:16445893-16445973 0.00044 2_[+1]_70 chr1:59196346-59196426 0.00044 71_[+1]_1 chr7:11220314-11220394 0.00044 2_[+1]_70 chr12:131328349-13132842 0.00044 70_[+1]_2 chr5:86217359-86217439 0.00044 11_[+1]_61 chr2:229128556-229128636 0.00044 55_[+1]_17 chr19:17819059-17819139 0.00044 52_[+1]_20 chr4:123637759-123637839 0.00044 69_[+1]_3 chr8:103606794-103606874 0.00044 71_[+1]_1 chr2:167057873-167057953 0.00044 65_[+1]_7 chr1:10248366-10248446 0.00044 1_[+1]_71 chr18:34343348-34343428 0.00044 54_[+1]_18 chr1:193131488-193131568 0.00044 16_[+1]_56 chr17:62721238-62721318 0.00044 18_[+1]_54 chr10:66313285-66313365 0.00044 9_[+1]_63 chrX:3571779-3571859 0.00044 1_[+1]_71 chr6:158590800-158590880 0.00044 61_[+1]_11 chr2:43742545-43742625 0.00044 [+1]_72 chrX:124412621-124412701 0.00044 71_[+1]_1 chr11:47580406-47580486 0.00044 17_[+1]_55 chr12:95542419-95542499 0.00044 40_[+1]_32 chr5:105723634-105723714 0.00044 66_[+1]_6 chr22:22605915-22605995 0.00044 15_[+1]_57 chr12:57887006-57887086 0.00044 71_[+1]_1 chr5:21833609-21833689 0.00046 12_[+1]_60 chr10:88511487-88511567 0.00046 63_[+1]_9 chr1:118861841-118861921 0.00056 56_[+1]_16 chr10:127809483-12780956 0.00056 71_[+1]_1 chr15:49399915-49399995 0.00056 19_[+1]_53 chrX:3432081-3432161 0.00056 27_[+1]_45 chr1:59197003-59197083 0.00065 5_[+1]_67 chrX:66719784-66719864 0.00065 59_[+1]_13 chr8:130497816-130497896 0.00065 69_[+1]_3 chr15:80297832-80297912 0.00065 52_[+1]_20 chr10:21350269-21350349 0.00065 13_[+1]_59 chr10:53313866-53313946 0.00069 52_[+1]_20 chr1:195541009-195541089 0.00069 70_[+1]_2 chr3:23195465-23195545 0.00073 66_[+1]_6 chr14:20705338-20705418 0.00094 65_[+1]_7 chr17:66067505-66067585 0.00094 67_[+1]_5 chr19:6700773-6700853 0.00094 39_[+1]_33 chr4:174404123-174404203 0.00094 14_[+1]_58 chr4:174405818-174405898 0.00094 20_[+1]_52 chr9:3504589-3504669 0.00094 72_[+1] chr11:86018474-86018554 0.00094 48_[+1]_24 chr6:44358799-44358879 0.00094 70_[+1]_2 chr7:20318480-20318560 0.001 63_[+1]_9 chr7:112436793-112436873 0.001 52_[+1]_20 chr16:67374712-67374792 0.0013 51_[+1]_21 chr17:38012321-38012401 0.0014 34_[+1]_38 chr18:1721067-1721147 0.0017 40_[+1]_32 chr21:18344188-18344268 0.0019 32_[+1]_40 chr6:82450476-82450556 0.002 49_[+1]_23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YATATATR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YATATATR width=8 seqs=149 chr2:58364081-58364161 ( 2) CATATATG 1 chr10:106117649-10611772 ( 67) CATATATG 1 chr2:153786319-153786399 ( 18) CATATATG 1 chr7:116671463-116671543 ( 60) CATATATG 1 chr3:128263615-128263695 ( 46) CATATATG 1 chr10:94270503-94270583 ( 67) CATATATG 1 chrX:9281434-9281514 ( 69) CATATATG 1 chr2:173486440-173486520 ( 56) CATATATG 1 chr18:28338189-28338269 ( 10) CATATATG 1 chrX:88682072-88682152 ( 52) CATATATG 1 chr22:20324211-20324291 ( 29) CATATATG 1 chr6:27068856-27068936 ( 47) CATATATG 1 chr10:54594282-54594362 ( 54) CATATATG 1 chr14:68278570-68278650 ( 3) CATATATG 1 chr2:174642311-174642391 ( 39) CATATATG 1 chr7:75293578-75293658 ( 25) CATATATG 1 chr16:52374296-52374376 ( 38) CATATATG 1 chr16:7026883-7026963 ( 5) CATATATG 1 chr22:20659471-20659551 ( 21) CATATATG 1 chr6:70631127-70631207 ( 5) CATATATG 1 chr10:17596935-17597015 ( 73) CATATATG 1 chrX:40822377-40822457 ( 9) CATATATG 1 chr1:109066587-109066667 ( 35) CATATATG 1 chr22:18716249-18716329 ( 55) CATATATG 1 chr22:21682083-21682163 ( 55) CATATATG 1 chr4:111005443-111005523 ( 50) CATATATG 1 chr1:76351519-76351599 ( 53) TATATATG 1 chr16:17962719-17962799 ( 71) TATATATG 1 chr12:1788738-1788818 ( 50) TATATATG 1 chr7:106412635-106412715 ( 25) TATATATG 1 chr6:16189078-16189158 ( 73) TATATATG 1 chr3:165659268-165659348 ( 60) TATATATG 1 chr4:163685117-163685197 ( 61) TATATATG 1 chr5:141405673-141405753 ( 61) TATATATG 1 chr17:77062030-77062110 ( 71) TATATATG 1 chr6:18888269-18888349 ( 63) TATATATG 1 chr3:65596832-65596912 ( 33) TATATATG 1 chrX:199505-199585 ( 67) TATATATG 1 chr20:52485753-52485833 ( 44) TATATATG 1 chr15:46320763-46320843 ( 57) TATATATG 1 chr8:29523871-29523951 ( 71) TATATATG 1 chr15:83899740-83899820 ( 27) TATATATG 1 chr3:169707740-169707820 ( 26) TATATATG 1 chr6:27238253-27238333 ( 70) TATATATG 1 chr15:75269759-75269839 ( 15) TATATATG 1 chr16:16728408-16728488 ( 29) TATATATG 1 chr8:54859812-54859892 ( 69) TATATATG 1 chr17:76638950-76639030 ( 30) TATATATG 1 chr8:11145465-11145545 ( 13) TATATATG 1 chr1:231188339-231188419 ( 4) TATATATG 1 chr10:7686484-7686564 ( 20) TATATATG 1 chr7:144478176-144478256 ( 17) TATATATG 1 chr2:85235520-85235600 ( 27) TATATATG 1 chr8:106895174-106895254 ( 19) TATATATG 1 chr15:41491969-41492049 ( 32) TATATATG 1 chr2:144300362-144300442 ( 46) TATATATG 1 chrX:128199987-128200067 ( 65) TATATATG 1 chr8:19092177-19092257 ( 55) TATATATG 1 chr1:201936019-201936099 ( 60) TATATATG 1 chr1:105412768-105412848 ( 66) TATATATG 1 chr6:132013888-132013968 ( 52) TATATATG 1 chr1:192320839-192320919 ( 19) TATATATG 1 chr12:113889458-11388953 ( 66) TATATATG 1 chr19:13487494-13487574 ( 48) TATATATG 1 chr7:4818924-4819004 ( 33) TATATATG 1 chr2:47483049-47483129 ( 73) TATATATG 1 chr17:38006577-38006657 ( 42) TATATATG 1 chr20:2890756-2890836 ( 70) TATATATG 1 chr10:78376603-78376683 ( 3) TATATATG 1 chr7:148642162-148642242 ( 65) TATATATG 1 chr8:116547437-116547517 ( 66) CATATATA 1 chr8:12417697-12417777 ( 54) CATATATA 1 chr8:20362239-20362319 ( 49) CATATATA 1 chr5:78474572-78474652 ( 1) CATATATA 1 chr1:236202039-236202119 ( 56) CATATATA 1 chr19:17819638-17819718 ( 22) CATATATA 1 chr16:68122198-68122278 ( 67) CATATATA 1 chr8:17677364-17677444 ( 27) CATATATA 1 chr4:12110839-12110919 ( 55) CATATATA 1 chr10:52320276-52320356 ( 49) CATATATA 1 chr15:83899110-83899190 ( 41) CATATATA 1 chr7:104727452-104727532 ( 51) CATATATA 1 chr19:10553536-10553616 ( 59) CATATATA 1 chr7:144889810-144889890 ( 3) CATATATA 1 chr3:101441813-101441893 ( 62) CATATATA 1 chr16:48951715-48951795 ( 57) CATATATA 1 chr11:60372540-60372620 ( 62) CATATATA 1 chr19:39093670-39093750 ( 59) CATATATA 1 chr2:119625674-119625754 ( 53) CATATATA 1 chr19:39352184-39352264 ( 37) CATATATA 1 chr11:33901755-33901835 ( 6) CATATATA 1 chrX:102743876-102743956 ( 35) CATATATA 1 chr22:18718779-18718859 ( 42) CATATATA 1 chr16:7982587-7982667 ( 59) CATATATA 1 chr5:10345016-10345096 ( 70) CATATATA 1 chr16:30156404-30156484 ( 8) CATATATA 1 chr3:16445893-16445973 ( 3) TATATATA 1 chr1:59196346-59196426 ( 72) TATATATA 1 chr7:11220314-11220394 ( 3) TATATATA 1 chr12:131328349-13132842 ( 71) TATATATA 1 chr5:86217359-86217439 ( 12) TATATATA 1 chr2:229128556-229128636 ( 56) TATATATA 1 chr19:17819059-17819139 ( 53) TATATATA 1 chr4:123637759-123637839 ( 70) TATATATA 1 chr8:103606794-103606874 ( 72) TATATATA 1 chr2:167057873-167057953 ( 66) TATATATA 1 chr1:10248366-10248446 ( 2) TATATATA 1 chr18:34343348-34343428 ( 55) TATATATA 1 chr1:193131488-193131568 ( 17) TATATATA 1 chr17:62721238-62721318 ( 19) TATATATA 1 chr10:66313285-66313365 ( 10) TATATATA 1 chrX:3571779-3571859 ( 2) TATATATA 1 chr6:158590800-158590880 ( 62) TATATATA 1 chr2:43742545-43742625 ( 1) TATATATA 1 chrX:124412621-124412701 ( 72) TATATATA 1 chr11:47580406-47580486 ( 18) TATATATA 1 chr12:95542419-95542499 ( 41) TATATATA 1 chr5:105723634-105723714 ( 67) TATATATA 1 chr22:22605915-22605995 ( 16) TATATATA 1 chr12:57887006-57887086 ( 72) TATATATA 1 chr5:21833609-21833689 ( 13) CATATGTG 1 chr10:88511487-88511567 ( 64) CATATGTG 1 chr1:118861841-118861921 ( 57) CATATATT 1 chr10:127809483-12780956 ( 72) CATATATT 1 chr15:49399915-49399995 ( 20) CATATATT 1 chrX:3432081-3432161 ( 28) CATATATT 1 chr1:59197003-59197083 ( 6) AATATATG 1 chrX:66719784-66719864 ( 60) AATATATG 1 chr8:130497816-130497896 ( 70) AATATATG 1 chr15:80297832-80297912 ( 53) AATATATG 1 chr10:21350269-21350349 ( 14) AATATATG 1 chr10:53313866-53313946 ( 53) TATATGTG 1 chr1:195541009-195541089 ( 71) TATATGTG 1 chr3:23195465-23195545 ( 67) CATATATC 1 chr14:20705338-20705418 ( 66) TATATATT 1 chr17:66067505-66067585 ( 68) TATATATT 1 chr19:6700773-6700853 ( 40) TATATATT 1 chr4:174404123-174404203 ( 15) TATATATT 1 chr4:174405818-174405898 ( 21) TATATATT 1 chr9:3504589-3504669 ( 73) TATATATT 1 chr11:86018474-86018554 ( 49) TATATATT 1 chr6:44358799-44358879 ( 71) TATATATT 1 chr7:20318480-20318560 ( 64) TATATATC 1 chr7:112436793-112436873 ( 53) TATATATC 1 chr16:67374712-67374792 ( 52) AATATATA 1 chr17:38012321-38012401 ( 35) TATATGTA 1 chr18:1721067-1721147 ( 41) AATATATT 1 chr21:18344188-18344268 ( 33) AATATATC 1 chr6:82450476-82450556 ( 50) AATATGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YATATATR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.80934 E= 5.3e-092 -254 139 -1386 66 151 -1386 -1386 -1386 -1386 -1386 -1386 153 151 -1386 -1386 -1386 -1386 -1386 -1386 153 145 -1386 -192 -1386 -1386 -1386 -1386 153 2 -250 180 -198 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YATATATR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 149 E= 5.3e-092 0.060403 0.395973 0.000000 0.543624 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.959732 0.000000 0.040268 0.000000 0.000000 0.000000 0.000000 1.000000 0.355705 0.026846 0.530201 0.087248 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YATATATR MEME-1 regular expression -------------------------------------------------------------------------------- [TC]ATATAT[GA] -------------------------------------------------------------------------------- Time 5.18 secs. ******************************************************************************** ******************************************************************************** MOTIF ATATMATA MEME-2 width = 8 sites = 141 llr = 976 E-value = 2.7e-063 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATATMATA MEME-2 Description -------------------------------------------------------------------------------- Simplified A a:9:4a:a pos.-specific C ::::3::: probability G ::112::: matrix T :a:91:a: bits 2.7 2.5 2.2 1.9 Relative 1.6 ** * Entropy 1.4 **** *** (10.0 bits) 1.1 **** *** 0.8 **** *** 0.5 **** *** 0.3 ******** 0.0 -------- Multilevel ATATAATA consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATATMATA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:58364081-58364161 50 9.47e-05 atatgtgtat atatcata tatattatat chr4:163685117-163685197 39 9.47e-05 aatatatgaa atatcata tatatgaaat chr5:141405673-141405753 50 9.47e-05 ataacaatat atatcata tcatatatat chr17:66067505-66067585 21 9.47e-05 aatatataat atatcata tacaaaatat chr3:169707740-169707820 66 9.47e-05 ataatattat atatcata tatatca chr8:103606794-103606874 35 9.47e-05 gttatatatt atatcata tattatgtta chr16:16728408-16728488 8 9.47e-05 atactat atatcata tagtattcta chr22:20324211-20324291 48 9.47e-05 tataaatggt atatcata tatgatatat chrX:3432081-3432161 55 9.47e-05 aaggtgttat atatcata taacataTGG chr1:195541009-195541089 60 9.47e-05 tatgtgattc atatcata tattatatgt chr4:12110839-12110919 1 9.47e-05 . atatcata tatagcgcat chr6:27068856-27068936 38 9.47e-05 tatatattat atatcata tcatatatga chr10:54594282-54594362 22 9.47e-05 catatatatc atatcata tatcatatgt chr10:7686484-7686564 70 9.47e-05 tatcacatat atatcata cat chr2:85235520-85235600 4 9.47e-05 tat atatcata ttatatatta chr8:106895174-106895254 71 9.47e-05 tataagatat atatcata ca chr3:23195465-23195545 43 9.47e-05 tatacgacat atatcata catatgttat chr2:174642311-174642391 65 9.47e-05 aatataaaat atatcata tgatatat chr11:60372540-60372620 8 9.47e-05 atcatat atatcata tatatcatat chr16:7026883-7026963 65 9.47e-05 catatactat atatcata tatattaa chr22:20659471-20659551 58 9.47e-05 tatataatat atatcata tattatatat chr7:4818924-4819004 64 9.47e-05 aacatgttat atatcata acgtgttat chrX:40822377-40822457 51 9.47e-05 tatatgatat atatcata tacgatatac chr11:33901755-33901835 72 9.47e-05 cacatgatat atatcata t chr2:47483049-47483129 35 9.47e-05 gatatataat atatcata tattatacat chr22:18716249-18716329 28 9.47e-05 tatagatgat atatcata cctgatatag chr10:21350269-21350349 46 9.47e-05 tttatatcat atatcata tattacatGG chr16:7982587-7982667 71 9.47e-05 tatatatcat atatcata ta chr22:21682083-21682163 26 9.47e-05 tataccgtat atatcata tatatgatat chr3:165659268-165659348 38 1.90e-04 gattcataat atatgata tctattatat chr5:78804757-78804837 57 1.90e-04 CTATTGTCAG ATATGATA GGGTGGTTAT chr17:77062030-77062110 47 1.90e-04 taaatgatat atatgata taccaaatat chr6:18888269-18888349 48 1.90e-04 atatatgtct atatgata tacatgatat chr1:59196346-59196426 21 1.90e-04 aatatatact atatgata tatagtatag chr20:52485753-52485833 63 1.90e-04 atcatatatt atatgata tataatatat chr15:46320763-46320843 68 1.90e-04 ATATATGATT ATATGATa tatag chr10:94270503-94270583 16 1.90e-04 CATCTCACAT ATATGata tatagcacat chr6:27238253-27238333 37 1.90e-04 tatgagatat atatgata tatatgatat chr15:49399915-49399995 51 1.90e-04 tatattatac atatgata ttgtatgtgt chr18:1721067-1721147 56 1.90e-04 attaaatatt atatgata tattacgtat chr14:68278570-68278650 40 1.90e-04 aatataaaat atatgata tataacatgt chr15:41491969-41492049 62 1.90e-04 atatgtcaat atatgata tatataatat chr2:144300362-144300442 17 1.90e-04 tatagtatat atatgata tatataatat chr8:19092177-19092257 69 1.90e-04 tatgtgatat atatgata tatg chr1:105412768-105412848 51 1.90e-04 tatatatgat atatgata tatatgatat chr17:63201932-63202012 8 1.90e-04 atagatt atatgata taggttatgt chr6:132013888-132013968 69 1.90e-04 gatatatgat atatgata tgat chr19:13487494-13487574 21 1.90e-04 tatatgttac atatgata cactacacat chr10:17596935-17597015 46 1.90e-04 cacataccat atatgata tataatatat chr22:18718779-18718859 52 1.90e-04 catatataat atatgata tatattacat chr20:2890756-2890836 17 1.90e-04 tgtatagtat atatgata tataacatca chr7:148642162-148642242 15 1.90e-04 agtgtatatg atatgata tatattatat chr4:111005443-111005523 60 1.90e-04 catatatgat atatgata tataccgcat chr3:16445893-16445973 15 4.09e-04 tatatacaat atataata tatataCACA chr7:106412635-106412715 6 4.09e-04 aatat atataata tatatattat chr8:20362239-20362319 59 4.09e-04 catatataat atataata tatgtaatat chrX:66719784-66719864 24 4.09e-04 tatatgttac atataata tatgcaatat chr5:78474572-78474652 47 4.09e-04 cacatatatt atataata tatcacatat chr1:236202039-236202119 25 4.09e-04 tataggtcat atataata tatattacct chr19:17819638-17819718 59 4.09e-04 atgtataaat atataata tatatTCACC chr3:128263615-128263695 58 4.09e-04 TATATGCCAT ATATAATA TGCATGTTCC chr16:68122198-68122278 34 4.09e-04 ggcactatat atataata tataacatat chr10:127809483-12780956 36 4.09e-04 tacatatgta atataata tatattatat chr19:17819059-17819139 33 4.09e-04 tatataatat atataata tacaatatat chr4:174404123-174404203 4 4.09e-04 aat atataata tattatatat chr15:75269759-75269839 45 4.09e-04 tatataacat atataata tgtatatttt chr18:28338189-28338269 66 4.09e-04 atatatacat atataata tctatat chrX:88682072-88682152 62 4.09e-04 catatatggc atataata tatggcatat chr17:76638950-76639030 65 4.09e-04 aatatattac atataata tataacat chr18:34343348-34343428 31 4.09e-04 tacacgttat atataata tgcgtattat chr8:17677364-17677444 55 4.09e-04 gttatataac atataata tacgtatgtt chr10:52320276-52320356 11 4.09e-04 tatataacac atataata cataatattt chr8:11145465-11145545 55 4.09e-04 aatacatagt atataata cgtatgatat chr1:231188339-231188419 25 4.09e-04 tacatatttt atataata tatgtaatat chr4:174405818-174405898 62 4.09e-04 tattatatgc atataata catattatat chr7:104727452-104727532 61 4.09e-04 catatataat atataata cataatatat chr8:130497816-130497896 1 4.09e-04 . atataata ctatacatat chr7:20318480-20318560 31 4.09e-04 tatttatgta atataata tgtaatatat chr7:144889810-144889890 63 4.09e-04 tgtatataat atataata tataacatat chr17:62721238-62721318 61 4.09e-04 aatatatgta atataata tattatataa chr10:66313285-66313365 37 4.09e-04 catgtaatat atataata tgtatgcatg chr3:101441813-101441893 72 4.09e-04 catatataat atataata t chr16:48951715-48951795 28 4.09e-04 catatattat atataata tataacatat chrX:3571779-3571859 56 4.09e-04 tatgtgatat atataata tatattatat chr1:201936019-201936099 20 4.09e-04 tatatatgtt atataata tgtatgttat chr2:119625674-119625754 28 4.09e-04 catataacat atataata tgtaacatta chrX:124412621-124412701 13 4.09e-04 tcatattgat atataata catagattat chr11:47580406-47580486 5 4.09e-04 taca atataata taatgtatat chr1:192320839-192320919 63 4.09e-04 tatataacat atataata tatataacac chr12:113889458-11388953 8 4.09e-04 atataat atataata tatgacatat chr12:95542419-95542499 58 4.09e-04 attatatatt atataata catagcatat chr7:112436793-112436873 66 4.09e-04 atatcatgta atataata tattata chr19:39352184-39352264 5 4.09e-04 tagc atataata tatactatat chr17:38012321-38012401 56 4.09e-04 TATAACATGT ATATAATA ACTCTTTTAA chrX:102743876-102743956 54 4.09e-04 tatatgttat atataata tgttatatat chr17:38006577-38006657 24 4.09e-04 atacatgtac atataata tatagcatat chr5:10345016-10345096 14 4.09e-04 catataACAT atataata tatatataaa chr10:78376603-78376683 57 4.09e-04 aatatattac atataata tgtaatatgt chr6:82450476-82450556 72 4.09e-04 attatatact atataata t chr16:30156404-30156484 66 4.09e-04 tatgtatcac atataata tatgtga chr1:76351519-76351599 5 6.24e-04 ttat atattata tagtatatgt chr1:59197003-59197083 71 6.24e-04 tatattacat atattata ta chr5:21833609-21833689 65 6.24e-04 tctatggcat atattata tgtaatat chr7:11220314-11220394 13 6.24e-04 tatatataac atattata tattatcttc chr10:53313866-53313946 19 6.24e-04 atacgtgtat atattata tgtgcgtatg chr5:86217359-86217439 1 6.24e-04 . atattata tgctatatat chr2:229128556-229128636 38 6.24e-04 tatattatat atattata tgcaatatgt chr15:83899740-83899820 41 6.24e-04 tatggtatat atattata tataccatat chr7:144478176-144478256 45 6.24e-04 tatatgtaat atattata tatgtaatat chrX:128199987-128200067 22 6.24e-04 aatatacacc atattata tatgcaatac chr6:158590800-158590880 21 6.24e-04 tgtatattat atattata tattgtatat chr16:52374296-52374376 59 6.24e-04 tatataagat atattata gatggtatat chr5:105723634-105723714 38 6.24e-04 tatatcatgc atattata tatattatgt chr15:80297832-80297912 37 6.24e-04 aatatatggt atattata tagtgtataa chr6:44358799-44358879 12 6.24e-04 aatatgttat atattata tattaaacat chr8:116547437-116547517 40 6.66e-04 tatagcatat atagcata tatatagcat chr8:37356597-37356677 52 6.66e-04 tatagtgtat atagcata gcatatacta chr7:29789750-29789830 35 6.66e-04 atcccttaac atagcata ggtcttttac chr2:167057873-167057953 44 6.66e-04 tatacgctat atagcata tagtatgcat chr8:54859812-54859892 23 6.66e-04 tatataagat atagcata tatatttata chr15:83899110-83899190 3 6.66e-04 at atagcata tatactgtat chr6:16189078-16189158 53 7.07e-04 atatatacac atgtcata tgatgcatat chr2:173486440-173486520 26 7.07e-04 tatctcatat atgtcata tatgtttata chrX:102490714-102490794 32 7.50e-04 tctgcctctc ataggata gatgggacat chr16:67374712-67374792 73 8.47e-04 catatactct atagaata chr1:109066587-109066667 51 8.88e-04 tgtgacatat atgtgata tatatgctat chr16:17962719-17962799 53 9.83e-04 TAAATGTATA ATGTAATA CATCCtatat chr1:118861841-118861921 44 9.83e-04 tatacgttat atgtaata tataacatat chr8:29523871-29523951 7 9.83e-04 tttaat atgtaata tttaatatat chr19:6700773-6700853 26 9.83e-04 gaaatatatt atgtaata tataattata chr19:10553536-10553616 2 9.83e-04 C ATGTAATA TTAGTAATAG chr2:153786319-153786399 48 1.03e-03 tgcatgcaac atatcaca tatacgtaac chr3:65596832-65596912 71 1.12e-03 actatatact atagtata ta chr12:131328349-13132842 14 1.12e-03 ctacgtatat atagtata tattgtatgt chr9:3504589-3504669 55 1.12e-03 tataaaatat atagtata tgccatatgg chr12:1788738-1788818 32 1.21e-03 GTtattgtat atgttata tataatttat chr22:22605915-22605995 58 1.48e-03 ttaatagcta atatctta cactggtata chrX:199505-199585 35 1.62e-03 atatatgtat atatgtta tgtatgtgtt chr11:86018474-86018554 16 1.83e-03 tatatcaaat atatatta tgtgtagtat chr14:20705338-20705418 1 1.93e-03 . ATATTACA TGTGGCACAT chr21:18344188-18344268 66 1.93e-03 tatatcttac atattaca taacata -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATATMATA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:58364081-58364161 9.5e-05 49_[+2]_23 chr4:163685117-163685197 9.5e-05 38_[+2]_34 chr5:141405673-141405753 9.5e-05 49_[+2]_23 chr17:66067505-66067585 9.5e-05 20_[+2]_52 chr3:169707740-169707820 9.5e-05 65_[+2]_7 chr8:103606794-103606874 9.5e-05 34_[+2]_38 chr16:16728408-16728488 9.5e-05 7_[+2]_65 chr22:20324211-20324291 9.5e-05 47_[+2]_25 chrX:3432081-3432161 9.5e-05 54_[+2]_18 chr1:195541009-195541089 9.5e-05 59_[+2]_13 chr4:12110839-12110919 9.5e-05 [+2]_72 chr6:27068856-27068936 9.5e-05 37_[+2]_35 chr10:54594282-54594362 9.5e-05 21_[+2]_51 chr10:7686484-7686564 9.5e-05 69_[+2]_3 chr2:85235520-85235600 9.5e-05 3_[+2]_69 chr8:106895174-106895254 9.5e-05 70_[+2]_2 chr3:23195465-23195545 9.5e-05 42_[+2]_30 chr2:174642311-174642391 9.5e-05 64_[+2]_8 chr11:60372540-60372620 9.5e-05 7_[+2]_65 chr16:7026883-7026963 9.5e-05 64_[+2]_8 chr22:20659471-20659551 9.5e-05 57_[+2]_15 chr7:4818924-4819004 9.5e-05 63_[+2]_9 chrX:40822377-40822457 9.5e-05 50_[+2]_22 chr11:33901755-33901835 9.5e-05 71_[+2]_1 chr2:47483049-47483129 9.5e-05 34_[+2]_38 chr22:18716249-18716329 9.5e-05 27_[+2]_45 chr10:21350269-21350349 9.5e-05 45_[+2]_27 chr16:7982587-7982667 9.5e-05 70_[+2]_2 chr22:21682083-21682163 9.5e-05 25_[+2]_47 chr3:165659268-165659348 0.00019 37_[+2]_35 chr5:78804757-78804837 0.00019 56_[+2]_16 chr17:77062030-77062110 0.00019 46_[+2]_26 chr6:18888269-18888349 0.00019 47_[+2]_25 chr1:59196346-59196426 0.00019 20_[+2]_52 chr20:52485753-52485833 0.00019 62_[+2]_10 chr15:46320763-46320843 0.00019 67_[+2]_5 chr10:94270503-94270583 0.00019 15_[+2]_57 chr6:27238253-27238333 0.00019 36_[+2]_36 chr15:49399915-49399995 0.00019 50_[+2]_22 chr18:1721067-1721147 0.00019 55_[+2]_17 chr14:68278570-68278650 0.00019 39_[+2]_33 chr15:41491969-41492049 0.00019 61_[+2]_11 chr2:144300362-144300442 0.00019 16_[+2]_56 chr8:19092177-19092257 0.00019 68_[+2]_4 chr1:105412768-105412848 0.00019 50_[+2]_22 chr17:63201932-63202012 0.00019 7_[+2]_65 chr6:132013888-132013968 0.00019 68_[+2]_4 chr19:13487494-13487574 0.00019 20_[+2]_52 chr10:17596935-17597015 0.00019 45_[+2]_27 chr22:18718779-18718859 0.00019 51_[+2]_21 chr20:2890756-2890836 0.00019 16_[+2]_56 chr7:148642162-148642242 0.00019 14_[+2]_58 chr4:111005443-111005523 0.00019 59_[+2]_13 chr3:16445893-16445973 0.00041 14_[+2]_58 chr7:106412635-106412715 0.00041 5_[+2]_67 chr8:20362239-20362319 0.00041 58_[+2]_14 chrX:66719784-66719864 0.00041 23_[+2]_49 chr5:78474572-78474652 0.00041 46_[+2]_26 chr1:236202039-236202119 0.00041 24_[+2]_48 chr19:17819638-17819718 0.00041 58_[+2]_14 chr3:128263615-128263695 0.00041 57_[+2]_15 chr16:68122198-68122278 0.00041 33_[+2]_39 chr10:127809483-12780956 0.00041 35_[+2]_37 chr19:17819059-17819139 0.00041 32_[+2]_40 chr4:174404123-174404203 0.00041 3_[+2]_69 chr15:75269759-75269839 0.00041 44_[+2]_28 chr18:28338189-28338269 0.00041 65_[+2]_7 chrX:88682072-88682152 0.00041 61_[+2]_11 chr17:76638950-76639030 0.00041 64_[+2]_8 chr18:34343348-34343428 0.00041 30_[+2]_42 chr8:17677364-17677444 0.00041 54_[+2]_18 chr10:52320276-52320356 0.00041 10_[+2]_62 chr8:11145465-11145545 0.00041 54_[+2]_18 chr1:231188339-231188419 0.00041 24_[+2]_48 chr4:174405818-174405898 0.00041 61_[+2]_11 chr7:104727452-104727532 0.00041 60_[+2]_12 chr8:130497816-130497896 0.00041 [+2]_72 chr7:20318480-20318560 0.00041 30_[+2]_42 chr7:144889810-144889890 0.00041 62_[+2]_10 chr17:62721238-62721318 0.00041 60_[+2]_12 chr10:66313285-66313365 0.00041 36_[+2]_36 chr3:101441813-101441893 0.00041 71_[+2]_1 chr16:48951715-48951795 0.00041 27_[+2]_45 chrX:3571779-3571859 0.00041 55_[+2]_17 chr1:201936019-201936099 0.00041 19_[+2]_53 chr2:119625674-119625754 0.00041 27_[+2]_45 chrX:124412621-124412701 0.00041 12_[+2]_60 chr11:47580406-47580486 0.00041 4_[+2]_68 chr1:192320839-192320919 0.00041 62_[+2]_10 chr12:113889458-11388953 0.00041 7_[+2]_65 chr12:95542419-95542499 0.00041 57_[+2]_15 chr7:112436793-112436873 0.00041 65_[+2]_7 chr19:39352184-39352264 0.00041 4_[+2]_68 chr17:38012321-38012401 0.00041 55_[+2]_17 chrX:102743876-102743956 0.00041 53_[+2]_19 chr17:38006577-38006657 0.00041 23_[+2]_49 chr5:10345016-10345096 0.00041 13_[+2]_59 chr10:78376603-78376683 0.00041 56_[+2]_16 chr6:82450476-82450556 0.00041 71_[+2]_1 chr16:30156404-30156484 0.00041 65_[+2]_7 chr1:76351519-76351599 0.00062 4_[+2]_68 chr1:59197003-59197083 0.00062 70_[+2]_2 chr5:21833609-21833689 0.00062 64_[+2]_8 chr7:11220314-11220394 0.00062 12_[+2]_60 chr10:53313866-53313946 0.00062 18_[+2]_54 chr5:86217359-86217439 0.00062 [+2]_72 chr2:229128556-229128636 0.00062 37_[+2]_35 chr15:83899740-83899820 0.00062 40_[+2]_32 chr7:144478176-144478256 0.00062 44_[+2]_28 chrX:128199987-128200067 0.00062 21_[+2]_51 chr6:158590800-158590880 0.00062 20_[+2]_52 chr16:52374296-52374376 0.00062 58_[+2]_14 chr5:105723634-105723714 0.00062 37_[+2]_35 chr15:80297832-80297912 0.00062 36_[+2]_36 chr6:44358799-44358879 0.00062 11_[+2]_61 chr8:116547437-116547517 0.00067 39_[+2]_33 chr8:37356597-37356677 0.00067 51_[+2]_21 chr7:29789750-29789830 0.00067 34_[+2]_38 chr2:167057873-167057953 0.00067 43_[+2]_29 chr8:54859812-54859892 0.00067 22_[+2]_50 chr15:83899110-83899190 0.00067 2_[+2]_70 chr6:16189078-16189158 0.00071 52_[+2]_20 chr2:173486440-173486520 0.00071 25_[+2]_47 chrX:102490714-102490794 0.00075 31_[+2]_41 chr16:67374712-67374792 0.00085 72_[+2] chr1:109066587-109066667 0.00089 50_[+2]_22 chr16:17962719-17962799 0.00098 52_[+2]_20 chr1:118861841-118861921 0.00098 43_[+2]_29 chr8:29523871-29523951 0.00098 6_[+2]_66 chr19:6700773-6700853 0.00098 25_[+2]_47 chr19:10553536-10553616 0.00098 1_[+2]_71 chr2:153786319-153786399 0.001 47_[+2]_25 chr3:65596832-65596912 0.0011 70_[+2]_2 chr12:131328349-13132842 0.0011 13_[+2]_59 chr9:3504589-3504669 0.0011 54_[+2]_18 chr12:1788738-1788818 0.0012 31_[+2]_41 chr22:22605915-22605995 0.0015 57_[+2]_15 chrX:199505-199585 0.0016 34_[+2]_38 chr11:86018474-86018554 0.0018 15_[+2]_57 chr14:20705338-20705418 0.0019 [+2]_72 chr21:18344188-18344268 0.0019 65_[+2]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATATMATA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATATMATA width=8 seqs=141 chr2:58364081-58364161 ( 50) ATATCATA 1 chr4:163685117-163685197 ( 39) ATATCATA 1 chr5:141405673-141405753 ( 50) ATATCATA 1 chr17:66067505-66067585 ( 21) ATATCATA 1 chr3:169707740-169707820 ( 66) ATATCATA 1 chr8:103606794-103606874 ( 35) ATATCATA 1 chr16:16728408-16728488 ( 8) ATATCATA 1 chr22:20324211-20324291 ( 48) ATATCATA 1 chrX:3432081-3432161 ( 55) ATATCATA 1 chr1:195541009-195541089 ( 60) ATATCATA 1 chr4:12110839-12110919 ( 1) ATATCATA 1 chr6:27068856-27068936 ( 38) ATATCATA 1 chr10:54594282-54594362 ( 22) ATATCATA 1 chr10:7686484-7686564 ( 70) ATATCATA 1 chr2:85235520-85235600 ( 4) ATATCATA 1 chr8:106895174-106895254 ( 71) ATATCATA 1 chr3:23195465-23195545 ( 43) ATATCATA 1 chr2:174642311-174642391 ( 65) ATATCATA 1 chr11:60372540-60372620 ( 8) ATATCATA 1 chr16:7026883-7026963 ( 65) ATATCATA 1 chr22:20659471-20659551 ( 58) ATATCATA 1 chr7:4818924-4819004 ( 64) ATATCATA 1 chrX:40822377-40822457 ( 51) ATATCATA 1 chr11:33901755-33901835 ( 72) ATATCATA 1 chr2:47483049-47483129 ( 35) ATATCATA 1 chr22:18716249-18716329 ( 28) ATATCATA 1 chr10:21350269-21350349 ( 46) ATATCATA 1 chr16:7982587-7982667 ( 71) ATATCATA 1 chr22:21682083-21682163 ( 26) ATATCATA 1 chr3:165659268-165659348 ( 38) ATATGATA 1 chr5:78804757-78804837 ( 57) ATATGATA 1 chr17:77062030-77062110 ( 47) ATATGATA 1 chr6:18888269-18888349 ( 48) ATATGATA 1 chr1:59196346-59196426 ( 21) ATATGATA 1 chr20:52485753-52485833 ( 63) ATATGATA 1 chr15:46320763-46320843 ( 68) ATATGATA 1 chr10:94270503-94270583 ( 16) ATATGATA 1 chr6:27238253-27238333 ( 37) ATATGATA 1 chr15:49399915-49399995 ( 51) ATATGATA 1 chr18:1721067-1721147 ( 56) ATATGATA 1 chr14:68278570-68278650 ( 40) ATATGATA 1 chr15:41491969-41492049 ( 62) ATATGATA 1 chr2:144300362-144300442 ( 17) ATATGATA 1 chr8:19092177-19092257 ( 69) ATATGATA 1 chr1:105412768-105412848 ( 51) ATATGATA 1 chr17:63201932-63202012 ( 8) ATATGATA 1 chr6:132013888-132013968 ( 69) ATATGATA 1 chr19:13487494-13487574 ( 21) ATATGATA 1 chr10:17596935-17597015 ( 46) ATATGATA 1 chr22:18718779-18718859 ( 52) ATATGATA 1 chr20:2890756-2890836 ( 17) ATATGATA 1 chr7:148642162-148642242 ( 15) ATATGATA 1 chr4:111005443-111005523 ( 60) ATATGATA 1 chr3:16445893-16445973 ( 15) ATATAATA 1 chr7:106412635-106412715 ( 6) ATATAATA 1 chr8:20362239-20362319 ( 59) ATATAATA 1 chrX:66719784-66719864 ( 24) ATATAATA 1 chr5:78474572-78474652 ( 47) ATATAATA 1 chr1:236202039-236202119 ( 25) ATATAATA 1 chr19:17819638-17819718 ( 59) ATATAATA 1 chr3:128263615-128263695 ( 58) ATATAATA 1 chr16:68122198-68122278 ( 34) ATATAATA 1 chr10:127809483-12780956 ( 36) ATATAATA 1 chr19:17819059-17819139 ( 33) ATATAATA 1 chr4:174404123-174404203 ( 4) ATATAATA 1 chr15:75269759-75269839 ( 45) ATATAATA 1 chr18:28338189-28338269 ( 66) ATATAATA 1 chrX:88682072-88682152 ( 62) ATATAATA 1 chr17:76638950-76639030 ( 65) ATATAATA 1 chr18:34343348-34343428 ( 31) ATATAATA 1 chr8:17677364-17677444 ( 55) ATATAATA 1 chr10:52320276-52320356 ( 11) ATATAATA 1 chr8:11145465-11145545 ( 55) ATATAATA 1 chr1:231188339-231188419 ( 25) ATATAATA 1 chr4:174405818-174405898 ( 62) ATATAATA 1 chr7:104727452-104727532 ( 61) ATATAATA 1 chr8:130497816-130497896 ( 1) ATATAATA 1 chr7:20318480-20318560 ( 31) ATATAATA 1 chr7:144889810-144889890 ( 63) ATATAATA 1 chr17:62721238-62721318 ( 61) ATATAATA 1 chr10:66313285-66313365 ( 37) ATATAATA 1 chr3:101441813-101441893 ( 72) ATATAATA 1 chr16:48951715-48951795 ( 28) ATATAATA 1 chrX:3571779-3571859 ( 56) ATATAATA 1 chr1:201936019-201936099 ( 20) ATATAATA 1 chr2:119625674-119625754 ( 28) ATATAATA 1 chrX:124412621-124412701 ( 13) ATATAATA 1 chr11:47580406-47580486 ( 5) ATATAATA 1 chr1:192320839-192320919 ( 63) ATATAATA 1 chr12:113889458-11388953 ( 8) ATATAATA 1 chr12:95542419-95542499 ( 58) ATATAATA 1 chr7:112436793-112436873 ( 66) ATATAATA 1 chr19:39352184-39352264 ( 5) ATATAATA 1 chr17:38012321-38012401 ( 56) ATATAATA 1 chrX:102743876-102743956 ( 54) ATATAATA 1 chr17:38006577-38006657 ( 24) ATATAATA 1 chr5:10345016-10345096 ( 14) ATATAATA 1 chr10:78376603-78376683 ( 57) ATATAATA 1 chr6:82450476-82450556 ( 72) ATATAATA 1 chr16:30156404-30156484 ( 66) ATATAATA 1 chr1:76351519-76351599 ( 5) ATATTATA 1 chr1:59197003-59197083 ( 71) ATATTATA 1 chr5:21833609-21833689 ( 65) ATATTATA 1 chr7:11220314-11220394 ( 13) ATATTATA 1 chr10:53313866-53313946 ( 19) ATATTATA 1 chr5:86217359-86217439 ( 1) ATATTATA 1 chr2:229128556-229128636 ( 38) ATATTATA 1 chr15:83899740-83899820 ( 41) ATATTATA 1 chr7:144478176-144478256 ( 45) ATATTATA 1 chrX:128199987-128200067 ( 22) ATATTATA 1 chr6:158590800-158590880 ( 21) ATATTATA 1 chr16:52374296-52374376 ( 59) ATATTATA 1 chr5:105723634-105723714 ( 38) ATATTATA 1 chr15:80297832-80297912 ( 37) ATATTATA 1 chr6:44358799-44358879 ( 12) ATATTATA 1 chr8:116547437-116547517 ( 40) ATAGCATA 1 chr8:37356597-37356677 ( 52) ATAGCATA 1 chr7:29789750-29789830 ( 35) ATAGCATA 1 chr2:167057873-167057953 ( 44) ATAGCATA 1 chr8:54859812-54859892 ( 23) ATAGCATA 1 chr15:83899110-83899190 ( 3) ATAGCATA 1 chr6:16189078-16189158 ( 53) ATGTCATA 1 chr2:173486440-173486520 ( 26) ATGTCATA 1 chrX:102490714-102490794 ( 32) ATAGGATA 1 chr16:67374712-67374792 ( 73) ATAGAATA 1 chr1:109066587-109066667 ( 51) ATGTGATA 1 chr16:17962719-17962799 ( 53) ATGTAATA 1 chr1:118861841-118861921 ( 44) ATGTAATA 1 chr8:29523871-29523951 ( 7) ATGTAATA 1 chr19:6700773-6700853 ( 26) ATGTAATA 1 chr19:10553536-10553616 ( 2) ATGTAATA 1 chr2:153786319-153786399 ( 48) ATATCACA 1 chr3:65596832-65596912 ( 71) ATAGTATA 1 chr12:131328349-13132842 ( 14) ATAGTATA 1 chr9:3504589-3504669 ( 55) ATAGTATA 1 chr12:1788738-1788818 ( 32) ATGTTATA 1 chr22:22605915-22605995 ( 58) ATATCTTA 1 chrX:199505-199585 ( 35) ATATGTTA 1 chr11:86018474-86018554 ( 16) ATATATTA 1 chr14:20705338-20705418 ( 1) ATATTACA 1 chr21:18344188-18344268 ( 66) ATATTACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATATMATA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.11624 E= 2.7e-063 151 -1378 -1378 -1378 -1378 -1378 -1378 153 142 -1378 -126 -1378 -1378 -1378 -97 142 13 87 33 -121 148 -1378 -1378 -402 -1378 -283 -1378 150 151 -1378 -1378 -1378 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATATMATA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 141 E= 2.7e-063 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.936170 0.000000 0.063830 0.000000 0.000000 0.000000 0.078014 0.921986 0.382979 0.276596 0.191489 0.148936 0.978723 0.000000 0.000000 0.021277 0.000000 0.021277 0.000000 0.978723 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATATMATA MEME-2 regular expression -------------------------------------------------------------------------------- ATAT[AC]ATA -------------------------------------------------------------------------------- Time 8.77 secs. ******************************************************************************** ******************************************************************************** MOTIF TRWTATAT MEME-3 width = 8 sites = 130 llr = 868 E-value = 3.6e-037 ******************************************************************************** -------------------------------------------------------------------------------- Motif TRWTATAT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :66:9:a: pos.-specific C :::1:::: probability G :41:1::: matrix T a:39:a:a bits 2.7 2.5 2.2 1.9 Relative 1.6 * *** Entropy 1.4 * ***** (9.6 bits) 1.1 * ***** 0.8 ** ***** 0.5 ** ***** 0.3 ******** 0.0 -------- Multilevel TAATATAT consensus GT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRWTATAT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:165659268-165659348 72 9.37e-05 tatatgatta tgatatat g chr17:77062030-77062110 30 9.37e-05 tatgattata tgatatat aaatgatata chr6:18888269-18888349 34 9.37e-05 atgatataca tgatatat atgtctatat chr20:52485753-52485833 27 9.37e-05 atatattata tgatatat agtacatact chr15:46320763-46320843 40 9.37e-05 atataatata tgatatat GACTTACGCT chr10:94270503-94270583 44 9.37e-05 acatctcaca tgatatat agcacataca chr3:169707740-169707820 47 9.37e-05 tatagatata tgatatat cataatatta chr6:27238253-27238333 49 9.37e-05 atgatatata tgatatat atcatgtatg chr22:20324211-20324291 58 9.37e-05 atatcatata tgatatat acaatatatc chr4:12110839-12110919 70 9.37e-05 atagcgcata tgatatat atc chr8:11145465-11145545 67 9.37e-05 ataatacgta tgatatat aatata chr10:7686484-7686564 44 9.37e-05 cacatatata tgatatat atcacatata chr18:1721067-1721147 23 9.37e-05 aaatattata tgatatat tacgtatacc chr2:85235520-85235600 69 9.37e-05 atatgttaca tgatatat atct chr8:106895174-106895254 1 9.37e-05 . tgatatat agtatacaaa chr14:68278570-68278650 18 9.37e-05 atgaaattta tgatatat aacaaatata chr2:174642311-174642391 73 9.37e-05 atatatcata tgatatat chrX:3571779-3571859 20 9.37e-05 atatactatg tgatatat ataatatata chr1:105412768-105412848 6 9.37e-05 atata tgatatat gatatatatg chr6:132013888-132013968 19 9.37e-05 tggttatata tgatatat ggttatatat chrX:124412621-124412701 40 9.37e-05 tatgtcatat tgatatat attacataga chr1:161513363-161513443 2 9.37e-05 t tgatatat ttccaaactt chr10:17596935-17597015 19 9.37e-05 ataccatata tgatatat aatatatgtc chrX:40822377-40822457 22 9.37e-05 atatgatata tgatatat atgatataag chr11:33901755-33901835 18 9.37e-05 tatatacaca tgatatat atatcatata chr1:109066587-109066667 1 9.37e-05 . tgatatat gtgatatatg chr2:47483049-47483129 24 9.37e-05 attatatgca tgatatat aatatatcat chr7:148642162-148642242 48 9.37e-05 gtatatgata tgatatat attatatagt chr16:30156404-30156484 23 9.37e-05 ataatatatg tgatatat atcacatata chr4:111005443-111005523 9 9.37e-05 cttatata tgatatat aacatataac chr1:59197003-59197083 58 3.09e-04 acactatgca taatatat tacatatatt chr5:21833609-21833689 40 3.09e-04 atattatatg taatatat tatataatct chr8:20362239-20362319 71 3.09e-04 ataatatatg taatatat aa chr19:17819638-17819718 35 3.09e-04 atataacata taatatat tacattatgt chr17:66067505-66067585 56 3.09e-04 acaaaatata taatatat aaaatatata chr1:118861841-118861921 15 3.09e-04 acgttatatg taatatat aacatatatt chr8:29523871-29523951 17 3.09e-04 atgtaatatt taatatat ttaatattac chr2:229128556-229128636 2 3.09e-04 g taatatat tatatatatt chr4:174404123-174404203 55 3.09e-04 aatttatatg taatatat ttcatgtata chr18:28338189-28338269 54 3.09e-04 acataatata taatatat acatatataa chr16:16728408-16728488 63 3.09e-04 acacaaacta taatatat gtactatata chr17:76638950-76639030 54 3.09e-04 gttatatacg taatatat tacatataat chr10:52320276-52320356 34 3.09e-04 tatttatgtg taatatat tatatgacat chr6:27068856-27068936 60 3.09e-04 atatgatata taatatat gatgtattat chr1:231188339-231188419 37 3.09e-04 ataatatatg taatatat attttttata chr4:174405818-174405898 11 3.09e-04 acatgatgta taatatat attatatatt chr10:54594282-54594362 67 3.09e-04 atatgtcatg taatatat agcaca chr7:144478176-144478256 73 3.09e-04 gtaatatatg taatatat chr7:104727452-104727532 71 3.09e-04 atataataca taatatat ag chr7:20318480-20318560 41 3.09e-04 atataatatg taatatat tacatattta chr7:144889810-144889890 27 3.09e-04 ataacatata taatatat ataacatata chr17:62721238-62721318 50 3.09e-04 atattatata taatatat gtaatataat chr16:48951715-48951795 47 3.09e-04 ataacatata taatatat aacatatata chr6:158590800-158590880 3 3.09e-04 ta taatatat tgtatattat chr11:47580406-47580486 63 3.09e-04 atataacaca taatatat tgtatataat chr1:192320839-192320919 50 3.09e-04 ataacacata taatatat aacatatata chr16:52374296-52374376 46 3.09e-04 gacatatatg taatatat aagatatatt chr21:18344188-18344268 53 3.09e-04 acatattaca taatatat cttacatatt chr22:20659471-20659551 29 3.09e-04 cacatatatg taatatat gtcatatatt chr7:112436793-112436873 29 3.09e-04 tcatgtaata taatatat atcatgtaat chr19:13487494-13487574 8 3.09e-04 ctacaca taatatat gttacatatg chr15:80297832-80297912 26 3.09e-04 atatagtgta taatatat ggtatattat chr19:39352184-39352264 52 3.09e-04 atagtatata taatatat actatattat chr17:38006577-38006657 56 3.09e-04 tatgtatata taatatat agcatattgt chr22:18718779-18718859 71 3.09e-04 atattacata taatatat ga chr5:10345016-10345096 46 3.09e-04 ataacatata taatatat tatatataac chr10:78376603-78376683 46 3.09e-04 atgtaatatg taatatat tacatataat chr1:236202039-236202119 10 4.01e-04 tattaccta tgttatat aggtcatata chrX:199505-199585 49 4.01e-04 gttatgtatg tgttatat atgtctatat chr5:86217359-86217439 30 4.01e-04 gtatatacta tgttatat gctatatgta chr8:103606794-103606874 24 4.01e-04 atatggcata tgttatat attatatcat chr2:173486440-173486520 3 4.01e-04 ca tgttatat gtttatatct chr8:17677364-17677444 69 4.01e-04 aatatacgta tgttatat aaca chr3:23195465-23195545 55 4.01e-04 atcatacata tgttatat acgacatata chr1:201936019-201936099 32 4.01e-04 ataatatgta tgttatat gttgtatata chr12:95542419-95542499 33 4.01e-04 acatagcata tgttatat tatatatatt chr6:44358799-44358879 36 4.01e-04 acatttaata tgttatat attatatatt chrX:102743876-102743956 62 4.01e-04 atatataata tgttatat ataatgtatg chr2:58364081-58364161 60 6.12e-04 atatcatata tattatat atatctcata chr1:76351519-76351599 36 6.12e-04 gtattatatg tattatat agtatatatt chr5:78474572-78474652 64 6.12e-04 atatcacata tattatat attacatat chr1:59196346-59196426 44 6.12e-04 tatagataca tattatat gtgcgatata chr16:68122198-68122278 51 6.12e-04 atataacata tattatat ataaaataca chr10:127809483-12780956 46 6.12e-04 atataatata tattatat attacatatg chr19:17819059-17819139 71 6.12e-04 ctatattata tattatat at chr15:49399915-49399995 7 6.12e-04 tataca tattatat gtatacatat chr15:75269759-75269839 30 6.12e-04 atgttatata tattatat ataacatata chrX:88682072-88682152 35 6.12e-04 ATATATGGca tattatat atggcatatc chr1:195541009-195541089 22 6.12e-04 tcatatcata tattatat gtgattcata chr8:130497816-130497896 53 6.12e-04 atatgtgtat tattatat attatctata chr15:41491969-41492049 10 6.12e-04 tatgtcata tattatat aatgtcatat chr11:60372540-60372620 43 6.12e-04 atatcatata tattatat atcatatata chr8:19092177-19092257 8 6.12e-04 atacata tattatat gtgatattac chr2:119625674-119625754 6 6.12e-04 acata tattatat ataacatata chr16:7026883-7026963 43 6.12e-04 atatattgta tattatat atatcatata chr12:113889458-11388953 56 6.12e-04 atatgacata tattatat aatatatatg chr5:105723634-105723714 14 6.12e-04 atatcacgca tattatat ataacatata chr6:82450476-82450556 61 6.12e-04 atatgtatca tattatat actatataat chr9:3504589-3504669 31 6.53e-04 atatgccata tggtatat attgcatata chr22:22605915-22605995 69 6.53e-04 tatcttacac tggtatat ttat chr12:131328349-13132842 46 7.47e-04 tacgtatata tagtatat attgtatgta chr15:83899740-83899820 60 7.47e-04 ataccatata tagtatat tgtatatata chr8:54859812-54859892 57 7.47e-04 atataagata tagtatat atattatata chr2:144300362-144300442 9 7.47e-04 cacatata tagtatat atatgatata chr2:153786319-153786399 1 7.88e-04 . tgacatat cacacatcac chr8:37356597-37356677 6 9.64e-04 tagcc taacatat actatagcat chrX:3432081-3432161 63 9.64e-04 atatatcata taacataT GGTGTTATGT chr7:4818924-4819004 46 9.64e-04 atatgatata taacatat aacatgttat chr7:67874015-67874095 3 1.06e-03 TA taatgtat tatgattcac chr19:6700069-6700149 28 1.06e-03 tggtttatta taatgtat taaattataa chr14:20705338-20705418 29 1.24e-03 ATAAAATATG TACTATAT ATTACATGTG chr3:65596832-65596912 60 1.24e-03 ACACGTGTAG tactatat actatagtat chr15:83899110-83899190 56 1.24e-03 atactgtata tactatat gccgtatata chr20:2890756-2890836 48 1.24e-03 atactatacg tcatatat aatatgacgt chr6:16189078-16189158 15 1.28e-03 tatatacaca tgtcatat gatgtatatg chr22:21682083-21682163 2 1.28e-03 a tgtcatat atacgatata chr4:163685117-163685197 15 1.42e-03 atatatgaaa tatcatat atatgaaata chr12:1788738-1788818 24 1.51e-03 GAAATGGAGT tattgtat atgttatata chrX:66719784-66719864 73 1.51e-03 atatgcaata tattgtat chr5:141405673-141405753 72 1.51e-03 atatatgata tattgtat a chr17:38012321-38012401 3 1.51e-03 ta tattgtat atgtacaata chr3:40603411-40603491 36 1.62e-03 caccccaacc tcttatat ctctgtgccc chr12:10562168-10562248 69 1.64e-03 AAGCTATAAG TGGTGTAT ATTT chr12:10588586-10588666 62 1.64e-03 AAGCTATAAA TGGTGTAT ATTTTGACAG chr2:167057873-167057953 18 1.68e-03 atactctata tagcatat agtatgcata chr1:193131488-193131568 6 1.72e-03 atata tagtgtat atatatatat chr22:18716249-18716329 6 1.76e-03 atata tcgtatat atgatataga chr19:51894427-51894507 53 1.80e-03 TCTTTATTCC TGCCATAT CCTCAAGACA chr17:76971191-76971271 70 1.94e-03 AACATCAGGT TCACATAT TGT chr16:17962719-17962799 63 2.08e-03 ATGTAATACA TCCtatat tatatatgat -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRWTATAT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:165659268-165659348 9.4e-05 71_[+3]_1 chr17:77062030-77062110 9.4e-05 29_[+3]_43 chr6:18888269-18888349 9.4e-05 33_[+3]_39 chr20:52485753-52485833 9.4e-05 26_[+3]_46 chr15:46320763-46320843 9.4e-05 39_[+3]_33 chr10:94270503-94270583 9.4e-05 43_[+3]_29 chr3:169707740-169707820 9.4e-05 46_[+3]_26 chr6:27238253-27238333 9.4e-05 48_[+3]_24 chr22:20324211-20324291 9.4e-05 57_[+3]_15 chr4:12110839-12110919 9.4e-05 69_[+3]_3 chr8:11145465-11145545 9.4e-05 66_[+3]_6 chr10:7686484-7686564 9.4e-05 43_[+3]_29 chr18:1721067-1721147 9.4e-05 22_[+3]_50 chr2:85235520-85235600 9.4e-05 68_[+3]_4 chr8:106895174-106895254 9.4e-05 [+3]_72 chr14:68278570-68278650 9.4e-05 17_[+3]_55 chr2:174642311-174642391 9.4e-05 72_[+3] chrX:3571779-3571859 9.4e-05 19_[+3]_53 chr1:105412768-105412848 9.4e-05 5_[+3]_67 chr6:132013888-132013968 9.4e-05 18_[+3]_54 chrX:124412621-124412701 9.4e-05 39_[+3]_33 chr1:161513363-161513443 9.4e-05 1_[+3]_71 chr10:17596935-17597015 9.4e-05 18_[+3]_54 chrX:40822377-40822457 9.4e-05 21_[+3]_51 chr11:33901755-33901835 9.4e-05 17_[+3]_55 chr1:109066587-109066667 9.4e-05 [+3]_72 chr2:47483049-47483129 9.4e-05 23_[+3]_49 chr7:148642162-148642242 9.4e-05 47_[+3]_25 chr16:30156404-30156484 9.4e-05 22_[+3]_50 chr4:111005443-111005523 9.4e-05 8_[+3]_64 chr1:59197003-59197083 0.00031 57_[+3]_15 chr5:21833609-21833689 0.00031 39_[+3]_33 chr8:20362239-20362319 0.00031 70_[+3]_2 chr19:17819638-17819718 0.00031 34_[+3]_38 chr17:66067505-66067585 0.00031 55_[+3]_17 chr1:118861841-118861921 0.00031 14_[+3]_58 chr8:29523871-29523951 0.00031 16_[+3]_56 chr2:229128556-229128636 0.00031 1_[+3]_71 chr4:174404123-174404203 0.00031 54_[+3]_18 chr18:28338189-28338269 0.00031 53_[+3]_19 chr16:16728408-16728488 0.00031 62_[+3]_10 chr17:76638950-76639030 0.00031 53_[+3]_19 chr10:52320276-52320356 0.00031 33_[+3]_39 chr6:27068856-27068936 0.00031 59_[+3]_13 chr1:231188339-231188419 0.00031 36_[+3]_36 chr4:174405818-174405898 0.00031 10_[+3]_62 chr10:54594282-54594362 0.00031 66_[+3]_6 chr7:144478176-144478256 0.00031 72_[+3] chr7:104727452-104727532 0.00031 70_[+3]_2 chr7:20318480-20318560 0.00031 40_[+3]_32 chr7:144889810-144889890 0.00031 26_[+3]_46 chr17:62721238-62721318 0.00031 49_[+3]_23 chr16:48951715-48951795 0.00031 46_[+3]_26 chr6:158590800-158590880 0.00031 2_[+3]_70 chr11:47580406-47580486 0.00031 62_[+3]_10 chr1:192320839-192320919 0.00031 49_[+3]_23 chr16:52374296-52374376 0.00031 45_[+3]_27 chr21:18344188-18344268 0.00031 52_[+3]_20 chr22:20659471-20659551 0.00031 28_[+3]_44 chr7:112436793-112436873 0.00031 28_[+3]_44 chr19:13487494-13487574 0.00031 7_[+3]_65 chr15:80297832-80297912 0.00031 25_[+3]_47 chr19:39352184-39352264 0.00031 51_[+3]_21 chr17:38006577-38006657 0.00031 55_[+3]_17 chr22:18718779-18718859 0.00031 70_[+3]_2 chr5:10345016-10345096 0.00031 45_[+3]_27 chr10:78376603-78376683 0.00031 45_[+3]_27 chr1:236202039-236202119 0.0004 9_[+3]_63 chrX:199505-199585 0.0004 48_[+3]_24 chr5:86217359-86217439 0.0004 29_[+3]_43 chr8:103606794-103606874 0.0004 23_[+3]_49 chr2:173486440-173486520 0.0004 2_[+3]_70 chr8:17677364-17677444 0.0004 68_[+3]_4 chr3:23195465-23195545 0.0004 54_[+3]_18 chr1:201936019-201936099 0.0004 31_[+3]_41 chr12:95542419-95542499 0.0004 32_[+3]_40 chr6:44358799-44358879 0.0004 35_[+3]_37 chrX:102743876-102743956 0.0004 61_[+3]_11 chr2:58364081-58364161 0.00061 59_[+3]_13 chr1:76351519-76351599 0.00061 35_[+3]_37 chr5:78474572-78474652 0.00061 63_[+3]_9 chr1:59196346-59196426 0.00061 43_[+3]_29 chr16:68122198-68122278 0.00061 50_[+3]_22 chr10:127809483-12780956 0.00061 45_[+3]_27 chr19:17819059-17819139 0.00061 70_[+3]_2 chr15:49399915-49399995 0.00061 6_[+3]_66 chr15:75269759-75269839 0.00061 29_[+3]_43 chrX:88682072-88682152 0.00061 34_[+3]_38 chr1:195541009-195541089 0.00061 21_[+3]_51 chr8:130497816-130497896 0.00061 52_[+3]_20 chr15:41491969-41492049 0.00061 9_[+3]_63 chr11:60372540-60372620 0.00061 42_[+3]_30 chr8:19092177-19092257 0.00061 7_[+3]_65 chr2:119625674-119625754 0.00061 5_[+3]_67 chr16:7026883-7026963 0.00061 42_[+3]_30 chr12:113889458-11388953 0.00061 55_[+3]_17 chr5:105723634-105723714 0.00061 13_[+3]_59 chr6:82450476-82450556 0.00061 60_[+3]_12 chr9:3504589-3504669 0.00065 30_[+3]_42 chr22:22605915-22605995 0.00065 68_[+3]_4 chr12:131328349-13132842 0.00075 45_[+3]_27 chr15:83899740-83899820 0.00075 59_[+3]_13 chr8:54859812-54859892 0.00075 56_[+3]_16 chr2:144300362-144300442 0.00075 8_[+3]_64 chr2:153786319-153786399 0.00079 [+3]_72 chr8:37356597-37356677 0.00096 5_[+3]_67 chrX:3432081-3432161 0.00096 62_[+3]_10 chr7:4818924-4819004 0.00096 45_[+3]_27 chr7:67874015-67874095 0.0011 2_[+3]_70 chr19:6700069-6700149 0.0011 27_[+3]_45 chr14:20705338-20705418 0.0012 28_[+3]_44 chr3:65596832-65596912 0.0012 59_[+3]_13 chr15:83899110-83899190 0.0012 55_[+3]_17 chr20:2890756-2890836 0.0012 47_[+3]_25 chr6:16189078-16189158 0.0013 14_[+3]_58 chr22:21682083-21682163 0.0013 1_[+3]_71 chr4:163685117-163685197 0.0014 14_[+3]_58 chr12:1788738-1788818 0.0015 23_[+3]_49 chrX:66719784-66719864 0.0015 72_[+3] chr5:141405673-141405753 0.0015 71_[+3]_1 chr17:38012321-38012401 0.0015 2_[+3]_70 chr3:40603411-40603491 0.0016 35_[+3]_37 chr12:10562168-10562248 0.0016 68_[+3]_4 chr12:10588586-10588666 0.0016 61_[+3]_11 chr2:167057873-167057953 0.0017 17_[+3]_55 chr1:193131488-193131568 0.0017 5_[+3]_67 chr22:18716249-18716329 0.0018 5_[+3]_67 chr19:51894427-51894507 0.0018 52_[+3]_20 chr17:76971191-76971271 0.0019 69_[+3]_3 chr16:17962719-17962799 0.0021 62_[+3]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRWTATAT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TRWTATAT width=8 seqs=130 chr3:165659268-165659348 ( 72) TGATATAT 1 chr17:77062030-77062110 ( 30) TGATATAT 1 chr6:18888269-18888349 ( 34) TGATATAT 1 chr20:52485753-52485833 ( 27) TGATATAT 1 chr15:46320763-46320843 ( 40) TGATATAT 1 chr10:94270503-94270583 ( 44) TGATATAT 1 chr3:169707740-169707820 ( 47) TGATATAT 1 chr6:27238253-27238333 ( 49) TGATATAT 1 chr22:20324211-20324291 ( 58) TGATATAT 1 chr4:12110839-12110919 ( 70) TGATATAT 1 chr8:11145465-11145545 ( 67) TGATATAT 1 chr10:7686484-7686564 ( 44) TGATATAT 1 chr18:1721067-1721147 ( 23) TGATATAT 1 chr2:85235520-85235600 ( 69) TGATATAT 1 chr8:106895174-106895254 ( 1) TGATATAT 1 chr14:68278570-68278650 ( 18) TGATATAT 1 chr2:174642311-174642391 ( 73) TGATATAT 1 chrX:3571779-3571859 ( 20) TGATATAT 1 chr1:105412768-105412848 ( 6) TGATATAT 1 chr6:132013888-132013968 ( 19) TGATATAT 1 chrX:124412621-124412701 ( 40) TGATATAT 1 chr1:161513363-161513443 ( 2) TGATATAT 1 chr10:17596935-17597015 ( 19) TGATATAT 1 chrX:40822377-40822457 ( 22) TGATATAT 1 chr11:33901755-33901835 ( 18) TGATATAT 1 chr1:109066587-109066667 ( 1) TGATATAT 1 chr2:47483049-47483129 ( 24) TGATATAT 1 chr7:148642162-148642242 ( 48) TGATATAT 1 chr16:30156404-30156484 ( 23) TGATATAT 1 chr4:111005443-111005523 ( 9) TGATATAT 1 chr1:59197003-59197083 ( 58) TAATATAT 1 chr5:21833609-21833689 ( 40) TAATATAT 1 chr8:20362239-20362319 ( 71) TAATATAT 1 chr19:17819638-17819718 ( 35) TAATATAT 1 chr17:66067505-66067585 ( 56) TAATATAT 1 chr1:118861841-118861921 ( 15) TAATATAT 1 chr8:29523871-29523951 ( 17) TAATATAT 1 chr2:229128556-229128636 ( 2) TAATATAT 1 chr4:174404123-174404203 ( 55) TAATATAT 1 chr18:28338189-28338269 ( 54) TAATATAT 1 chr16:16728408-16728488 ( 63) TAATATAT 1 chr17:76638950-76639030 ( 54) TAATATAT 1 chr10:52320276-52320356 ( 34) TAATATAT 1 chr6:27068856-27068936 ( 60) TAATATAT 1 chr1:231188339-231188419 ( 37) TAATATAT 1 chr4:174405818-174405898 ( 11) TAATATAT 1 chr10:54594282-54594362 ( 67) TAATATAT 1 chr7:144478176-144478256 ( 73) TAATATAT 1 chr7:104727452-104727532 ( 71) TAATATAT 1 chr7:20318480-20318560 ( 41) TAATATAT 1 chr7:144889810-144889890 ( 27) TAATATAT 1 chr17:62721238-62721318 ( 50) TAATATAT 1 chr16:48951715-48951795 ( 47) TAATATAT 1 chr6:158590800-158590880 ( 3) TAATATAT 1 chr11:47580406-47580486 ( 63) TAATATAT 1 chr1:192320839-192320919 ( 50) TAATATAT 1 chr16:52374296-52374376 ( 46) TAATATAT 1 chr21:18344188-18344268 ( 53) TAATATAT 1 chr22:20659471-20659551 ( 29) TAATATAT 1 chr7:112436793-112436873 ( 29) TAATATAT 1 chr19:13487494-13487574 ( 8) TAATATAT 1 chr15:80297832-80297912 ( 26) TAATATAT 1 chr19:39352184-39352264 ( 52) TAATATAT 1 chr17:38006577-38006657 ( 56) TAATATAT 1 chr22:18718779-18718859 ( 71) TAATATAT 1 chr5:10345016-10345096 ( 46) TAATATAT 1 chr10:78376603-78376683 ( 46) TAATATAT 1 chr1:236202039-236202119 ( 10) TGTTATAT 1 chrX:199505-199585 ( 49) TGTTATAT 1 chr5:86217359-86217439 ( 30) TGTTATAT 1 chr8:103606794-103606874 ( 24) TGTTATAT 1 chr2:173486440-173486520 ( 3) TGTTATAT 1 chr8:17677364-17677444 ( 69) TGTTATAT 1 chr3:23195465-23195545 ( 55) TGTTATAT 1 chr1:201936019-201936099 ( 32) TGTTATAT 1 chr12:95542419-95542499 ( 33) TGTTATAT 1 chr6:44358799-44358879 ( 36) TGTTATAT 1 chrX:102743876-102743956 ( 62) TGTTATAT 1 chr2:58364081-58364161 ( 60) TATTATAT 1 chr1:76351519-76351599 ( 36) TATTATAT 1 chr5:78474572-78474652 ( 64) TATTATAT 1 chr1:59196346-59196426 ( 44) TATTATAT 1 chr16:68122198-68122278 ( 51) TATTATAT 1 chr10:127809483-12780956 ( 46) TATTATAT 1 chr19:17819059-17819139 ( 71) TATTATAT 1 chr15:49399915-49399995 ( 7) TATTATAT 1 chr15:75269759-75269839 ( 30) TATTATAT 1 chrX:88682072-88682152 ( 35) TATTATAT 1 chr1:195541009-195541089 ( 22) TATTATAT 1 chr8:130497816-130497896 ( 53) TATTATAT 1 chr15:41491969-41492049 ( 10) TATTATAT 1 chr11:60372540-60372620 ( 43) TATTATAT 1 chr8:19092177-19092257 ( 8) TATTATAT 1 chr2:119625674-119625754 ( 6) TATTATAT 1 chr16:7026883-7026963 ( 43) TATTATAT 1 chr12:113889458-11388953 ( 56) TATTATAT 1 chr5:105723634-105723714 ( 14) TATTATAT 1 chr6:82450476-82450556 ( 61) TATTATAT 1 chr9:3504589-3504669 ( 31) TGGTATAT 1 chr22:22605915-22605995 ( 69) TGGTATAT 1 chr12:131328349-13132842 ( 46) TAGTATAT 1 chr15:83899740-83899820 ( 60) TAGTATAT 1 chr8:54859812-54859892 ( 57) TAGTATAT 1 chr2:144300362-144300442 ( 9) TAGTATAT 1 chr2:153786319-153786399 ( 1) TGACATAT 1 chr8:37356597-37356677 ( 6) TAACATAT 1 chrX:3432081-3432161 ( 63) TAACATAT 1 chr7:4818924-4819004 ( 46) TAACATAT 1 chr7:67874015-67874095 ( 3) TAATGTAT 1 chr19:6700069-6700149 ( 28) TAATGTAT 1 chr14:20705338-20705418 ( 29) TACTATAT 1 chr3:65596832-65596912 ( 60) TACTATAT 1 chr15:83899110-83899190 ( 56) TACTATAT 1 chr20:2890756-2890836 ( 48) TCATATAT 1 chr6:16189078-16189158 ( 15) TGTCATAT 1 chr22:21682083-21682163 ( 2) TGTCATAT 1 chr4:163685117-163685197 ( 15) TATCATAT 1 chr12:1788738-1788818 ( 24) TATTGTAT 1 chrX:66719784-66719864 ( 73) TATTGTAT 1 chr5:141405673-141405753 ( 72) TATTGTAT 1 chr17:38012321-38012401 ( 3) TATTGTAT 1 chr3:40603411-40603491 ( 36) TCTTATAT 1 chr12:10562168-10562248 ( 69) TGGTGTAT 1 chr12:10588586-10588666 ( 62) TGGTGTAT 1 chr2:167057873-167057953 ( 18) TAGCATAT 1 chr1:193131488-193131568 ( 6) TAGTGTAT 1 chr22:18716249-18716329 ( 6) TCGTATAT 1 chr19:51894427-51894507 ( 53) TGCCATAT 1 chr17:76971191-76971271 ( 70) TCACATAT 1 chr16:17962719-17962799 ( 63) TCCTATAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRWTATAT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.87896 E= 3.6e-037 -1367 -1367 -1367 153 74 -198 130 -1367 72 -198 -85 -20 -1367 -98 -1367 142 141 -1367 -114 -1367 -1367 -1367 -1367 153 151 -1367 -1367 -1367 -1367 -1367 -1367 153 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRWTATAT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 130 E= 3.6e-037 0.000000 0.000000 0.000000 1.000000 0.584615 0.038462 0.376923 0.000000 0.576923 0.038462 0.084615 0.300000 0.000000 0.076923 0.000000 0.923077 0.930769 0.000000 0.069231 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRWTATAT MEME-3 regular expression -------------------------------------------------------------------------------- T[AG][AT]TATAT -------------------------------------------------------------------------------- Time 12.13 secs. ******************************************************************************** ******************************************************************************** MOTIF AAGGGAYC MEME-4 width = 8 sites = 35 llr = 340 E-value = 1.0e-022 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAGGGAYC MEME-4 Description -------------------------------------------------------------------------------- Simplified A 79:::91: pos.-specific C 2:::::69 probability G ::aaa1:: matrix T 1:::::3: bits 2.7 *** 2.5 *** * 2.2 *** * 1.9 *** * Relative 1.6 *** * Entropy 1.4 *** * (14.0 bits) 1.1 ***** * 0.8 ******* 0.5 ******** 0.3 ******** 0.0 -------- Multilevel AAGGGACC consensus C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGGGAYC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:2392814-2392894 70 3.58e-06 GCTTGTGGCT AAGGGACC GCC chrX:2375392-2375472 44 3.58e-06 TATGTGGCGC AAGGGACC TCTGCTGTGT chrX:2397418-2397498 19 3.58e-06 GAATGTGGCC AAGGGACC ACCACCATGT chr17:47100168-47100248 5 3.58e-06 TACT AAGGGACC ATCTTGAAAG chrX:2393556-2393636 34 3.58e-06 GCATGTGGCT AAGGGACC GCCGCCAGGT chr10:1015835-1015915 3 3.58e-06 GT AAGGGACC GTGAGCATTT chrX:2386832-2386912 61 3.58e-06 GCTTGTGGCT AAGGGACC ACCGCCATGT chrX:2397217-2397297 69 3.58e-06 GCATGTGGCT AAGGGACC ACCA chrX:2387444-2387524 51 3.58e-06 GCATGTGGCC AAGGGACC GCCACCCTAT chr17:53802938-53803018 34 3.58e-06 AAACACAATT AAGGGACC GGAGACAATT chr6:28370147-28370227 3 5.13e-06 CC CAGGGACC TAGGTGAAAC chr12:56635660-56635740 44 5.13e-06 GCTGGGAAGG CAGGGACC AAGCCCCAGT chr2:201675983-201676063 30 5.13e-06 CTGCAGCGCG CAGGGACC GCGGTTGGAG chr20:48330621-48330701 68 6.69e-06 CTCGGGGGCC AAGGGGCC ATCTA chr10:120851675-12085175 12 1.48e-05 ATTCTCTCCC AAGGGATC ATCAGTATAT chr3:170540432-170540512 39 1.48e-05 ccgcagaaat aagggatc agggcgcaga chr17:39662448-39662528 14 1.48e-05 cagagacctt aagggatc ttagggacca chr21:33788424-33788504 2 1.48e-05 C AAGGGATC CTCATATTTT chr8:1845558-1845638 33 1.48e-05 GCTCTGTCCT AAGGGATC GGATCGCAGT chr10:115323068-11532314 31 1.90e-05 AGGTTAGTTT CAGGGATC CGGATATAGG chr11:76494112-76494192 7 1.90e-05 AGGGGG CAGGGATC CGGGATGCAG chr10:133741892-13374197 32 1.90e-05 TCATGTCTGT CAGGGATC CCTTTTGTTT chr16:86825069-86825149 12 2.25e-05 TCCCTAAAGT TAGGGACC ACACTTCCTG chr6:53480636-53480716 7 3.23e-05 CTTTGC AAGGGAAC TTTGATCTCT chr12:8085973-8086053 7 3.23e-05 TCTGCT AAGGGAAC CCAGCTTCTT chr6:4380342-4380422 33 3.23e-05 CAACTGAGGT AAGGGAAC ATCAGTAAAG chr1:9749336-9749416 15 3.39e-05 TGCGAACCCC AAGGGCCC CGCCTGGCAG chr5:415658-415738 12 4.92e-05 GTGGGAGGCC TAGGGGCC GAATCTGCCT chr3:67068637-67068717 48 6.15e-05 TTGTTAAACT TAGGGATC AAACTTAGCT chrX:2382121-2382201 34 6.15e-05 GTACGTGGCT AAGGGACG GCCGCCATGT chr7:106731082-106731162 7 6.51e-05 CAGCCT AAGGGGAC ATCTGCAGTT chr2:85788900-85788980 43 6.86e-05 TCTCTGGTGT GAGGGATC GGGCGCAAAG chr1:145575953-145576033 9 7.15e-05 GGAGGTAT AGGGGGCC GGACTGGGCG chr11:64794793-64794873 59 8.88e-05 GGCCGCGCAC CCGGGATC GGAACAGCGC chr12:10562168-10562248 26 1.22e-04 TGTGTGATGT CAGGGACT GTGCTCTATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGGGAYC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:2392814-2392894 3.6e-06 69_[+4]_3 chrX:2375392-2375472 3.6e-06 43_[+4]_29 chrX:2397418-2397498 3.6e-06 18_[+4]_54 chr17:47100168-47100248 3.6e-06 4_[+4]_68 chrX:2393556-2393636 3.6e-06 33_[+4]_39 chr10:1015835-1015915 3.6e-06 2_[+4]_70 chrX:2386832-2386912 3.6e-06 60_[+4]_12 chrX:2397217-2397297 3.6e-06 68_[+4]_4 chrX:2387444-2387524 3.6e-06 50_[+4]_22 chr17:53802938-53803018 3.6e-06 33_[+4]_39 chr6:28370147-28370227 5.1e-06 2_[+4]_70 chr12:56635660-56635740 5.1e-06 43_[+4]_29 chr2:201675983-201676063 5.1e-06 29_[+4]_43 chr20:48330621-48330701 6.7e-06 67_[+4]_5 chr10:120851675-12085175 1.5e-05 11_[+4]_61 chr3:170540432-170540512 1.5e-05 38_[+4]_34 chr17:39662448-39662528 1.5e-05 13_[+4]_59 chr21:33788424-33788504 1.5e-05 1_[+4]_71 chr8:1845558-1845638 1.5e-05 32_[+4]_40 chr10:115323068-11532314 1.9e-05 30_[+4]_42 chr11:76494112-76494192 1.9e-05 6_[+4]_66 chr10:133741892-13374197 1.9e-05 31_[+4]_41 chr16:86825069-86825149 2.3e-05 11_[+4]_61 chr6:53480636-53480716 3.2e-05 6_[+4]_66 chr12:8085973-8086053 3.2e-05 6_[+4]_66 chr6:4380342-4380422 3.2e-05 32_[+4]_40 chr1:9749336-9749416 3.4e-05 14_[+4]_58 chr5:415658-415738 4.9e-05 11_[+4]_61 chr3:67068637-67068717 6.1e-05 47_[+4]_25 chrX:2382121-2382201 6.1e-05 33_[+4]_39 chr7:106731082-106731162 6.5e-05 6_[+4]_66 chr2:85788900-85788980 6.9e-05 42_[+4]_30 chr1:145575953-145576033 7.2e-05 8_[+4]_64 chr11:64794793-64794873 8.9e-05 58_[+4]_14 chr12:10562168-10562248 0.00012 25_[+4]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGGGAYC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAGGGAYC width=8 seqs=35 chrX:2392814-2392894 ( 70) AAGGGACC 1 chrX:2375392-2375472 ( 44) AAGGGACC 1 chrX:2397418-2397498 ( 19) AAGGGACC 1 chr17:47100168-47100248 ( 5) AAGGGACC 1 chrX:2393556-2393636 ( 34) AAGGGACC 1 chr10:1015835-1015915 ( 3) AAGGGACC 1 chrX:2386832-2386912 ( 61) AAGGGACC 1 chrX:2397217-2397297 ( 69) AAGGGACC 1 chrX:2387444-2387524 ( 51) AAGGGACC 1 chr17:53802938-53803018 ( 34) AAGGGACC 1 chr6:28370147-28370227 ( 3) CAGGGACC 1 chr12:56635660-56635740 ( 44) CAGGGACC 1 chr2:201675983-201676063 ( 30) CAGGGACC 1 chr20:48330621-48330701 ( 68) AAGGGGCC 1 chr10:120851675-12085175 ( 12) AAGGGATC 1 chr3:170540432-170540512 ( 39) AAGGGATC 1 chr17:39662448-39662528 ( 14) AAGGGATC 1 chr21:33788424-33788504 ( 2) AAGGGATC 1 chr8:1845558-1845638 ( 33) AAGGGATC 1 chr10:115323068-11532314 ( 31) CAGGGATC 1 chr11:76494112-76494192 ( 7) CAGGGATC 1 chr10:133741892-13374197 ( 32) CAGGGATC 1 chr16:86825069-86825149 ( 12) TAGGGACC 1 chr6:53480636-53480716 ( 7) AAGGGAAC 1 chr12:8085973-8086053 ( 7) AAGGGAAC 1 chr6:4380342-4380422 ( 33) AAGGGAAC 1 chr1:9749336-9749416 ( 15) AAGGGCCC 1 chr5:415658-415738 ( 12) TAGGGGCC 1 chr3:67068637-67068717 ( 48) TAGGGATC 1 chrX:2382121-2382201 ( 34) AAGGGACG 1 chr7:106731082-106731162 ( 7) AAGGGGAC 1 chr2:85788900-85788980 ( 43) GAGGGATC 1 chr1:145575953-145576033 ( 9) AGGGGGCC 1 chr11:64794793-64794873 ( 59) CCGGGATC 1 chr12:10562168-10562248 ( 26) CAGGGACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGGGAYC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.84661 E= 1.0e-022 91 59 -242 -201 143 -241 -242 -1177 -1177 -1177 271 -1177 -1177 -1177 271 -1177 -1177 -1177 271 -1177 129 -241 -42 -1177 -162 191 -1177 -14 -1177 264 -242 -359 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGGGAYC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 1.0e-022 0.657143 0.228571 0.028571 0.085714 0.942857 0.028571 0.028571 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.857143 0.028571 0.114286 0.000000 0.114286 0.571429 0.000000 0.314286 0.000000 0.942857 0.028571 0.028571 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGGGAYC MEME-4 regular expression -------------------------------------------------------------------------------- [AC]AGGGA[CT]C -------------------------------------------------------------------------------- Time 15.29 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCTRGSC MEME-5 width = 8 sites = 44 llr = 384 E-value = 5.9e-019 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCTRGSC MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::421: pos.-specific C 8aa1:238 probability G 1::15662 matrix T 1::82::: bits 2.7 * 2.5 ** 2.2 ** 1.9 ** * Relative 1.6 *** * Entropy 1.4 *** ** (12.6 bits) 1.1 *** ** 0.8 **** *** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CCCTGGGC consensus AAC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTRGSC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:30228096-30228176 56 6.60e-07 tatccactcc ccctgggc tctcacagca chr15:63654669-63654749 29 6.60e-07 AGCAGATAAG CCCTGGGC AATGGTCCAG chr7:150974313-150974393 65 1.31e-06 CCTCGGCGGG CCCTGGCC AGACCCGT chr19:925535-925615 71 1.90e-06 CTCTTCTTCC CCCGGGGC GC chrX:2393556-2393636 68 3.41e-06 TGAAGATGTT CCCTAGGC ATGTG chrX:2387444-2387524 35 3.41e-06 TGAAGACACT CCCTAGGC ATGTGGCCAA chr15:43398212-43398292 41 4.36e-06 AGTTGCCGAC CCCCGGCC AGAGGCAAGC chr2:134877435-134877515 47 4.36e-06 TGCCAAACGT CCCCGGCC GGAATTTCTG chr11:8625613-8625693 71 5.02e-06 TTCTGACGAT CCCTGGGG CT chr7:106731082-106731162 62 8.99e-06 AACTGACAAT CCCTGAGC TTCTTCTGTG chr19:51894427-51894507 6 1.18e-05 gggac ccctgccc ccttctctct chr11:64794793-64794873 44 1.18e-05 TTCAGACGCT CCCTTGGC CGCGCACCCG chr19:56159382-56159462 67 1.47e-05 AGGGGCGCTA GCCTGGCC CGACTG chr10:104953152-10495323 19 1.77e-05 AGCCGACGCT CCCTGACC GCGCTGCGTC chr6:44174370-44174450 15 2.04e-05 tgtttctgat cccttgcc tcctggggat chr6:13847121-13847201 27 2.26e-05 actttccgat ccctaggg gagggggtgc chr20:56048690-56048770 17 2.26e-05 ttttaaagtt ccctaggg aattctaatg chr22:30821655-30821735 22 2.60e-05 GTCTGTAAAA CCCGAGCC TGGGAGAGGG chr20:47463138-47463218 37 2.60e-05 TGTAGACGCT CCCTGGAC CCCAGCAAAA chr2:85788900-85788980 22 2.89e-05 GTCCCTGCGT CCCTGCGG TGCTCTCTGG chr17:21792997-21793077 53 2.89e-05 agcgacaaat ccctgcgg cttggcggag chrX:2392814-2392894 54 3.51e-05 TGAAGACGTT CCCTAAGC TTGTGGCTAA chr1:9749336-9749416 35 3.51e-05 CCTGGCAGCG TCCTGGGC CTCCGGGCGA chrX:2386832-2386912 45 3.51e-05 TGAAGACGTT CCCTAAGC TTGTGGCTAA chrX:2397217-2397297 2 3.51e-05 T CCCTAAGC ATGTGGCCCA chr12:217201-217281 63 5.87e-05 tgttccctaa ccctaacc ctaaccctaa chr20:48330621-48330701 4 6.25e-05 ACC GCCCAGGC TTTCGGGGAA chr17:35736069-35736149 69 6.25e-05 ACCCTGCAGT GCCTTGGC TCTG chr14:24583564-24583644 5 6.94e-05 GGGA CGCTGGGC ACCCCTTAGG chr1:151689411-151689491 66 7.69e-05 TTGATAATAA CCCTTCCC CCATCTT chr3:127309491-127309571 8 7.69e-05 CCTGCAG CCCTTCCC GACAGCGGCG chrX:9281434-9281514 41 8.22e-05 tgtctactat tccggggc atacacccca chrX:2397418-2397498 67 9.26e-05 AAGAATATGG CCCTGTGC ACACTG chr1:145575953-145576033 45 9.26e-05 GGCATTTGCG GCCGGCGC CAGGGTGGAG chr5:415658-415738 43 1.13e-04 CTGCTGGGAG GCCTAGGG GCCGAATCTG chr4:79503005-79503085 13 1.13e-04 TCTTCCTCTT CCCTTACC CCAATCTAAG chr3:40603411-40603491 28 1.13e-04 tatttccaca ccccaacc tcttatatct chr12:8085973-8086053 35 1.22e-04 TGTAACTAAC CCCTAAGG GATAATACAG chr10:115323068-11532314 68 1.22e-04 TTGACTATCA GCCTGGAC TTTCC chr9:34379662-34379742 38 1.33e-04 CACACTGCAT TCCGGGCC GGTGCTCGTA chr16:86825069-86825149 45 1.48e-04 AAGTCTGAGC CCCCAGAC CCAGTGCCAT chrX:129205944-129206024 52 1.70e-04 TTTATGCAGA TCCCAGGC AGACAGGGGC chr13:115017457-11501753 10 2.01e-04 GGATAAGAG CCCTACAC TAACCCTGTT chr17:47100168-47100248 57 2.13e-04 AACTGGGGTT CCCTTAGG CCCTTACTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTRGSC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:30228096-30228176 6.6e-07 55_[+5]_17 chr15:63654669-63654749 6.6e-07 28_[+5]_44 chr7:150974313-150974393 1.3e-06 64_[+5]_8 chr19:925535-925615 1.9e-06 70_[+5]_2 chrX:2393556-2393636 3.4e-06 67_[+5]_5 chrX:2387444-2387524 3.4e-06 34_[+5]_38 chr15:43398212-43398292 4.4e-06 40_[+5]_32 chr2:134877435-134877515 4.4e-06 46_[+5]_26 chr11:8625613-8625693 5e-06 70_[+5]_2 chr7:106731082-106731162 9e-06 61_[+5]_11 chr19:51894427-51894507 1.2e-05 5_[+5]_67 chr11:64794793-64794873 1.2e-05 43_[+5]_29 chr19:56159382-56159462 1.5e-05 66_[+5]_6 chr10:104953152-10495323 1.8e-05 18_[+5]_54 chr6:44174370-44174450 2e-05 14_[+5]_58 chr6:13847121-13847201 2.3e-05 26_[+5]_46 chr20:56048690-56048770 2.3e-05 16_[+5]_56 chr22:30821655-30821735 2.6e-05 21_[+5]_51 chr20:47463138-47463218 2.6e-05 36_[+5]_36 chr2:85788900-85788980 2.9e-05 21_[+5]_51 chr17:21792997-21793077 2.9e-05 52_[+5]_20 chrX:2392814-2392894 3.5e-05 53_[+5]_19 chr1:9749336-9749416 3.5e-05 34_[+5]_38 chrX:2386832-2386912 3.5e-05 44_[+5]_28 chrX:2397217-2397297 3.5e-05 1_[+5]_71 chr12:217201-217281 5.9e-05 62_[+5]_10 chr20:48330621-48330701 6.2e-05 3_[+5]_69 chr17:35736069-35736149 6.2e-05 68_[+5]_4 chr14:24583564-24583644 6.9e-05 4_[+5]_68 chr1:151689411-151689491 7.7e-05 65_[+5]_7 chr3:127309491-127309571 7.7e-05 7_[+5]_65 chrX:9281434-9281514 8.2e-05 40_[+5]_32 chrX:2397418-2397498 9.3e-05 66_[+5]_6 chr1:145575953-145576033 9.3e-05 44_[+5]_28 chr5:415658-415738 0.00011 42_[+5]_30 chr4:79503005-79503085 0.00011 12_[+5]_60 chr3:40603411-40603491 0.00011 27_[+5]_45 chr12:8085973-8086053 0.00012 34_[+5]_38 chr10:115323068-11532314 0.00012 67_[+5]_5 chr9:34379662-34379742 0.00013 37_[+5]_35 chr16:86825069-86825149 0.00015 44_[+5]_28 chrX:129205944-129206024 0.00017 51_[+5]_21 chr13:115017457-11501753 0.0002 9_[+5]_63 chr17:47100168-47100248 0.00021 56_[+5]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTRGSC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCTRGSC width=8 seqs=44 chr17:30228096-30228176 ( 56) CCCTGGGC 1 chr15:63654669-63654749 ( 29) CCCTGGGC 1 chr7:150974313-150974393 ( 65) CCCTGGCC 1 chr19:925535-925615 ( 71) CCCGGGGC 1 chrX:2393556-2393636 ( 68) CCCTAGGC 1 chrX:2387444-2387524 ( 35) CCCTAGGC 1 chr15:43398212-43398292 ( 41) CCCCGGCC 1 chr2:134877435-134877515 ( 47) CCCCGGCC 1 chr11:8625613-8625693 ( 71) CCCTGGGG 1 chr7:106731082-106731162 ( 62) CCCTGAGC 1 chr19:51894427-51894507 ( 6) CCCTGCCC 1 chr11:64794793-64794873 ( 44) CCCTTGGC 1 chr19:56159382-56159462 ( 67) GCCTGGCC 1 chr10:104953152-10495323 ( 19) CCCTGACC 1 chr6:44174370-44174450 ( 15) CCCTTGCC 1 chr6:13847121-13847201 ( 27) CCCTAGGG 1 chr20:56048690-56048770 ( 17) CCCTAGGG 1 chr22:30821655-30821735 ( 22) CCCGAGCC 1 chr20:47463138-47463218 ( 37) CCCTGGAC 1 chr2:85788900-85788980 ( 22) CCCTGCGG 1 chr17:21792997-21793077 ( 53) CCCTGCGG 1 chrX:2392814-2392894 ( 54) CCCTAAGC 1 chr1:9749336-9749416 ( 35) TCCTGGGC 1 chrX:2386832-2386912 ( 45) CCCTAAGC 1 chrX:2397217-2397297 ( 2) CCCTAAGC 1 chr12:217201-217281 ( 63) CCCTAACC 1 chr20:48330621-48330701 ( 4) GCCCAGGC 1 chr17:35736069-35736149 ( 69) GCCTTGGC 1 chr14:24583564-24583644 ( 5) CGCTGGGC 1 chr1:151689411-151689491 ( 66) CCCTTCCC 1 chr3:127309491-127309571 ( 8) CCCTTCCC 1 chrX:9281434-9281514 ( 41) TCCGGGGC 1 chrX:2397418-2397498 ( 67) CCCTGTGC 1 chr1:145575953-145576033 ( 45) GCCGGCGC 1 chr5:415658-415738 ( 43) GCCTAGGG 1 chr4:79503005-79503085 ( 13) CCCTTACC 1 chr3:40603411-40603491 ( 28) CCCCAACC 1 chr12:8085973-8086053 ( 35) CCCTAAGG 1 chr10:115323068-11532314 ( 68) GCCTGGAC 1 chr9:34379662-34379742 ( 38) TCCGGGCC 1 chr16:86825069-86825149 ( 45) CCCCAGAC 1 chrX:129205944-129206024 ( 52) TCCCAGGC 1 chr13:115017457-11501753 ( 10) CCCTACAC 1 chr17:47100168-47100248 ( 57) CCCTTAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTRGSC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.7763 E= 5.9e-019 -1210 235 -16 -192 -1210 269 -275 -1210 -1210 272 -1210 -1210 -1210 -15 -43 112 5 -1210 164 -112 -62 7 195 -392 -195 107 195 -1210 -1210 243 25 -1210 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTRGSC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 44 E= 5.9e-019 0.000000 0.772727 0.136364 0.090909 0.000000 0.977273 0.022727 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.136364 0.113636 0.750000 0.363636 0.000000 0.477273 0.159091 0.227273 0.159091 0.590909 0.022727 0.090909 0.318182 0.590909 0.000000 0.000000 0.818182 0.181818 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTRGSC MEME-5 regular expression -------------------------------------------------------------------------------- CCCT[GA][GA][GC]C -------------------------------------------------------------------------------- Time 18.40 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:111005443-111005523 8.08e-04 8_[+3(9.37e-05)]_21_[+3(9.37e-05)]_\ 4_[+1(4.13e-05)]_5_[+3(9.37e-05)]_10 chr16:30156404-30156484 1.56e-03 3_[+2(9.47e-05)]_11_[+3(9.37e-05)]_\ 17_[+3(9.37e-05)]_25 chr22:21682083-21682163 4.51e-04 25_[+2(9.47e-05)]_21_[+1(4.13e-05)]_\ 18 chr7:148642162-148642242 1.90e-03 17_[+3(9.37e-05)]_22_[+3(9.37e-05)]_\ 25 chr6:82450476-82450556 6.31e-02 80 chr10:78376603-78376683 7.84e-03 80 chr5:10345016-10345096 1.13e-02 80 chr20:2890756-2890836 1.80e-03 19_[+3(9.37e-05)]_53 chr16:7982587-7982667 1.06e-02 2_[+2(9.47e-05)]_1_[+2(9.47e-05)]_1_\ [+2(9.47e-05)]_8_[+2(9.47e-05)]_1_[+2(9.47e-05)]_1_[+2(9.47e-05)]_1_\ [+2(9.47e-05)]_9 chr10:21350269-21350349 2.56e-03 38_[+2(9.47e-05)]_34 chr22:18716249-18716329 4.73e-04 23_[+3(9.37e-05)]_23_[+1(4.13e-05)]_\ 18 chr22:18718779-18718859 2.71e-03 54_[+3(9.37e-05)]_18 chr17:38006577-38006657 7.84e-03 80 chr2:47483049-47483129 7.00e-04 23_[+3(9.37e-05)]_3_[+2(9.47e-05)]_\ 38 chrX:102743876-102743956 1.09e-02 80 chr1:109066587-109066667 2.36e-03 [+3(9.37e-05)]_1_[+3(9.37e-05)]_4_\ [+1(4.13e-05)]_5_[+1(4.13e-05)]_3_[+1(4.13e-05)]_[+3(9.37e-05)]_19 chr17:38012321-38012401 9.28e-02 80 chr12:57887006-57887086 5.48e-01 80 chr11:33901755-33901835 1.72e-03 1_[+2(9.47e-05)]_8_[+3(9.37e-05)]_\ [+2(9.47e-05)]_8_[+3(9.37e-05)]_[+2(9.47e-05)]_8_[+3(9.37e-05)]_7 chrX:40822377-40822457 4.41e-04 8_[+1(4.13e-05)]_5_[+3(9.37e-05)]_\ 15_[+3(9.37e-05)]_28 chr10:17596935-17597015 4.48e-04 12_[+1(4.13e-05)]_22_[+1(4.13e-05)]_\ 22_[+1(4.13e-05)] chr22:22605915-22605995 2.92e-02 80 chr19:39352184-39352264 4.07e-03 32_[+2(9.47e-05)]_40 chr6:44358799-44358879 4.38e-02 80 chr7:4818924-4819004 9.06e-04 38_[+3(9.37e-05)]_17_[+2(9.47e-05)]_\ 9 chr15:80297832-80297912 2.62e-02 80 chr19:13487494-13487574 9.85e-04 53_[+3(9.37e-05)]_19 chr6:70631127-70631207 3.18e-03 4_[+1(4.13e-05)]_4_[+2(9.47e-05)]_4_\ [+2(9.47e-05)]_1_[+2(9.47e-05)]_6_[+2(9.47e-05)]_1_[+2(9.47e-05)]_12 chr7:112436793-112436873 3.01e-02 80 chr22:20659471-20659551 1.16e-03 20_[+1(4.13e-05)]_29_[+2(9.47e-05)]_\ 15 chr11:86018474-86018554 2.19e-01 80 chr9:3504589-3504669 5.97e-02 80 chr5:105723634-105723714 3.28e-02 80 chr21:18344188-18344268 9.26e-02 80 chr1:161513363-161513443 3.39e-02 1_[+3(9.37e-05)]_71 chr12:95542419-95542499 2.08e-02 80 chr12:113889458-11388953 7.85e-03 80 chr16:7026883-7026963 1.78e-03 4_[+1(4.13e-05)]_4_[+2(9.47e-05)]_\ 26_[+2(9.47e-05)]_6_[+2(9.47e-05)]_8 chr16:52374296-52374376 4.54e-03 37_[+1(4.13e-05)]_35 chr1:192320839-192320919 7.77e-03 80 chr11:47580406-47580486 9.60e-03 80 chr12:10588586-10588666 4.47e-02 80 chrX:124412621-124412701 7.73e-03 8_[+3(9.37e-05)]_23_[+3(9.37e-05)]_\ 33 chr2:119625674-119625754 1.69e-02 80 chr2:43742545-43742625 3.81e-01 80 chr19:6700069-6700149 5.17e-01 80 chr16:67374712-67374792 2.28e-01 80 chr6:132013888-132013968 1.95e-03 1_[+3(9.37e-05)]_9_[+3(9.37e-05)]_\ 31_[+3(9.37e-05)]_15 chr19:39093670-39093750 5.08e-01 80 chr6:158590800-158590880 2.28e-02 80 chr17:63201932-63202012 2.09e-01 80 chr1:105412768-105412848 1.95e-03 5_[+3(9.37e-05)]_8_[+3(9.37e-05)]_8_\ [+3(9.37e-05)]_1_[+3(9.37e-05)]_8_[+3(9.37e-05)]_1_[+3(9.37e-05)]_1 chr7:75293578-75293658 2.61e-01 24_[+1(4.13e-05)]_48 chr7:67874015-67874095 3.34e-01 80 chr1:201936019-201936099 9.33e-03 80 chr8:19092177-19092257 1.95e-03 62_[+3(9.37e-05)]_1_[+3(9.37e-05)]_\ 1 chrX:3571779-3571859 7.83e-03 19_[+3(9.37e-05)]_22_[+3(9.37e-05)]_\ 23 chr11:60372540-60372620 6.59e-03 7_[+2(9.47e-05)]_1_[+2(9.47e-05)]_8_\ [+2(9.47e-05)]_8_[+2(9.47e-05)]_1_[+2(9.47e-05)]_15 chr16:48951715-48951795 4.09e-03 61_[+2(9.47e-05)]_11 chr3:101441813-101441893 7.72e-03 80 chrX:128199987-128200067 1.62e-02 80 chr2:174642311-174642391 4.77e-04 8_[+1(4.13e-05)]_22_[+1(4.13e-05)]_\ 18_[+2(9.47e-05)]_[+3(9.37e-05)] chr3:23195465-23195545 1.09e-02 15_[+2(9.47e-05)]_19_[+2(9.47e-05)]_\ 19_[+2(9.47e-05)]_3 chr2:144300362-144300442 1.95e-03 19_[+3(9.37e-05)]_24_[+3(9.37e-05)]_\ 21 chr10:66313285-66313365 1.75e-02 80 chr17:62721238-62721318 1.70e-02 80 chr15:41491969-41492049 1.95e-03 64_[+3(9.37e-05)]_8 chr7:144889810-144889890 1.13e-02 80 chr7:20318480-20318560 3.02e-02 80 chr14:68278570-68278650 7.97e-04 2_[+1(4.13e-05)]_7_[+3(9.37e-05)]_\ 17_[+3(9.37e-05)]_30 chr8:106895174-106895254 1.17e-03 [+3(9.37e-05)]_29_[+2(9.47e-05)]_25_\ [+2(9.47e-05)]_2 chr19:10553536-10553616 4.20e-02 80 chr2:85235520-85235600 1.17e-03 3_[+2(9.47e-05)]_12_[+3(9.37e-05)]_\ 1_[+3(9.37e-05)]_28_[+3(9.37e-05)]_4 chr8:130497816-130497896 2.11e-02 80 chr16:87329042-87329122 4.82e-01 80 chr17:53802938-53803018 4.11e-02 33_[+4(3.58e-06)]_39 chr7:104727452-104727532 9.15e-03 80 chr18:1721067-1721147 1.14e-02 22_[+3(9.37e-05)]_28_[+3(9.37e-05)]_\ 14 chr1:193131488-193131568 7.03e-02 80 chr15:83899110-83899190 3.76e-02 80 chr7:144478176-144478256 1.05e-02 80 chr6:27727764-27727844 9.73e-01 80 chr10:7686484-7686564 1.17e-03 7_[+3(9.37e-05)]_10_[+3(9.37e-05)]_\ 10_[+3(9.37e-05)]_18_[+2(9.47e-05)]_3 chr10:54594282-54594362 1.16e-03 7_[+2(9.47e-05)]_1_[+2(9.47e-05)]_4_\ [+2(9.47e-05)]_4_[+2(9.47e-05)]_5_[+1(4.13e-05)]_19 chr4:174405818-174405898 2.85e-02 80 chr16:10970926-10971006 3.77e-01 80 chr1:231188339-231188419 4.07e-03 80 chr8:11145465-11145545 3.36e-03 66_[+3(9.37e-05)]_6 chr12:10562168-10562248 4.39e-02 80 chr6:27068856-27068936 4.76e-04 37_[+2(9.47e-05)]_1_[+1(4.13e-05)]_\ 26 chr10:52320276-52320356 1.13e-02 80 chr4:12110839-12110919 1.37e-03 [+2(9.47e-05)]_11_[+3(9.37e-05)]_17_\ [+3(9.37e-05)]_17_[+3(9.37e-05)]_3 chr8:17677364-17677444 1.34e-02 80 chr18:34343348-34343428 6.46e-02 80 chr7:106731082-106731162 3.92e-03 6_[+4(6.51e-05)]_47_[+5(8.99e-06)]_\ 11 chr17:76638950-76639030 7.80e-03 80 chr17:35736069-35736149 2.22e-01 68_[+5(6.25e-05)]_4 chr9:34379662-34379742 8.59e-02 80 chr1:195541009-195541089 1.16e-02 13_[+2(9.47e-05)]_15_[+2(9.47e-05)]_\ 15_[+2(9.47e-05)]_13 chr8:1845558-1845638 3.14e-02 32_[+4(1.48e-05)]_40 chr11:8625613-8625693 2.95e-02 35_[+5(2.26e-05)]_27_[+5(5.02e-06)]_\ 2 chrX:3432081-3432161 4.47e-03 54_[+2(9.47e-05)]_18 chr22:20324211-20324291 4.67e-04 28_[+1(4.13e-05)]_15_[+1(4.13e-05)]_\ 21 chr19:38527915-38527995 1.80e-01 80 chr21:33788424-33788504 1.03e-02 1_[+4(1.48e-05)]_71 chrX:102490714-102490794 1.23e-01 80 chr1:10248366-10248446 2.42e-02 80 chr8:54859812-54859892 1.64e-02 80 chrX:88682072-88682152 9.28e-04 51_[+1(4.13e-05)]_21 chr16:16728408-16728488 2.66e-03 7_[+2(9.47e-05)]_65 chr18:28338189-28338269 3.39e-03 9_[+1(4.13e-05)]_63 chr2:167057873-167057953 5.17e-02 80 chr15:75269759-75269839 9.29e-03 80 chr2:173486440-173486520 5.98e-03 20_[+1(4.13e-05)]_1_[+1(4.13e-05)]_\ 9_[+1(4.13e-05)]_1_[+1(4.13e-05)]_17 chr20:47463138-47463218 6.86e-02 36_[+5(2.60e-05)]_36 chr3:40603411-40603491 1.00e-01 80 chrX:129205944-129206024 9.79e-02 80 chrX:2387444-2387524 2.50e-04 34_[+5(3.41e-06)]_8_[+4(3.58e-06)]_\ 22 chr15:49399915-49399995 1.92e-02 80 chrX:2397217-2397297 1.51e-03 1_[+5(3.51e-05)]_9_[+4(9.69e-05)]_4_\ [+5(9.26e-05)]_14_[+5(3.51e-05)]_8_[+4(3.58e-06)]_4 chr8:103606794-103606874 6.27e-03 34_[+2(9.47e-05)]_38 chr4:174404123-174404203 2.85e-02 80 chr6:27238253-27238333 1.89e-03 3_[+3(9.37e-05)]_1_[+3(9.37e-05)]_\ 19_[+3(9.37e-05)]_1_[+3(9.37e-05)]_24 chr8:23332913-23332993 4.35e-01 80 chr3:169707740-169707820 1.17e-03 31_[+3(9.37e-05)]_7_[+3(9.37e-05)]_\ 11_[+2(9.47e-05)]_7 chr17:45335117-45335197 7.32e-01 80 chr7:68316297-68316377 8.72e-01 80 chr15:83899740-83899820 1.26e-02 80 chr19:38646302-38646382 8.17e-01 80 chr4:123637759-123637839 6.70e-01 80 chr8:130689968-130690048 4.73e-01 80 chr17:39662448-39662528 1.02e-01 13_[+4(1.48e-05)]_1_[+4(2.25e-05)]_\ 50 chr2:201675983-201676063 2.47e-02 29_[+4(5.13e-06)]_43 chr6:44174370-44174450 1.13e-01 14_[+5(2.04e-05)]_58 chr3:170540432-170540512 3.59e-02 38_[+4(1.48e-05)]_34 chr2:134877435-134877515 9.46e-03 46_[+5(4.36e-06)]_26 chr1:40538835-40538915 3.70e-01 80 chr19:17819059-17819139 1.76e-02 80 chr10:104953152-10495323 3.31e-02 18_[+5(1.77e-05)]_54 chr10:127809483-12780956 2.02e-02 80 chrX:2386832-2386912 1.23e-03 44_[+5(3.51e-05)]_8_[+4(3.58e-06)]_\ 12 chr12:57887800-57887880 5.87e-01 80 chr1:9749336-9749416 7.75e-03 14_[+4(3.39e-05)]_12_[+5(3.51e-05)]_\ 38 chr6:99878621-99878701 7.66e-01 80 chr7:150974313-150974393 4.01e-03 64_[+5(1.31e-06)]_8 chr6:4380342-4380422 2.42e-02 32_[+4(3.23e-05)]_40 chr2:229128556-229128636 2.31e-02 80 chr5:86217359-86217439 1.96e-02 80 chrX:9281434-9281514 1.11e-03 40_[+5(8.22e-05)]_20_[+1(4.13e-05)]_\ 4 chr19:6700773-6700853 3.70e-02 80 chr12:131328349-13132842 5.74e-02 80 chr13:115017457-11501753 1.92e-01 80 chr10:94270503-94270583 7.34e-04 12_[+1(4.13e-05)]_23_[+3(9.37e-05)]_\ 15_[+1(4.13e-05)]_6 chr10:53313866-53313946 4.53e-02 80 chr8:29523871-29523951 1.39e-02 80 chr20:48330621-48330701 3.49e-03 3_[+5(6.25e-05)]_48_[+4(8.42e-05)]_\ [+4(6.69e-06)]_5 chr15:46320763-46320843 1.47e-03 25_[+3(9.37e-05)]_6_[+3(9.37e-05)]_\ 23_[+3(9.37e-05)]_2 chr1:118861841-118861921 3.55e-02 80 chr21:17116048-17116128 5.68e-01 80 chr16:68122198-68122278 1.23e-03 80 chr22:30821655-30821735 3.30e-02 21_[+5(2.60e-05)]_51 chr7:11220314-11220394 2.10e-02 80 chr10:120851675-12085175 6.96e-03 11_[+4(1.48e-05)]_61 chr10:1015835-1015915 2.92e-02 2_[+4(3.58e-06)]_37_[+4(3.58e-06)]_\ 25 chr20:52485753-52485833 1.68e-03 26_[+3(9.37e-05)]_31_[+3(9.37e-05)]_\ 7 chr1:59196346-59196426 4.53e-03 23_[+3(9.37e-05)]_49 chrX:199505-199585 6.68e-03 80 chr20:56048690-56048770 2.66e-02 16_[+5(2.26e-05)]_56 chr15:63654669-63654749 3.61e-03 28_[+5(6.60e-07)]_44 chr4:79503005-79503085 2.79e-01 80 chrX:2393556-2393636 2.29e-04 17_[+5(3.51e-05)]_8_[+4(3.58e-06)]_\ 26_[+5(3.41e-06)]_5 chr3:128263615-128263695 8.40e-03 45_[+1(4.13e-05)]_27 chr3:65596832-65596912 2.42e-02 80 chr21:9705192-9705272 3.17e-01 80 chr6:18888269-18888349 1.93e-03 7_[+3(9.37e-05)]_18_[+3(9.37e-05)]_\ 18_[+3(9.37e-05)]_13 chrX:2382121-2382201 1.13e-01 33_[+4(6.15e-05)]_39 chr17:66067505-66067585 1.01e-02 20_[+2(9.47e-05)]_52 chr11:64794793-64794873 7.09e-03 43_[+5(1.18e-05)]_7_[+4(8.88e-05)]_\ 14 chr17:77062030-77062110 1.86e-03 7_[+3(9.37e-05)]_14_[+3(9.37e-05)]_\ 3_[+3(9.37e-05)]_32 chr17:21792997-21793077 8.47e-02 52_[+5(2.89e-05)]_20 chr21:46222576-46222656 3.15e-01 80 chr5:78804757-78804837 1.21e-01 80 chr19:17819638-17819718 1.13e-02 80 chr2:61034383-61034463 6.15e-01 80 chr1:236202039-236202119 4.63e-03 80 chr5:141405673-141405753 1.06e-03 49_[+2(9.47e-05)]_9_[+3(9.37e-05)]_\ 6 chr4:163685117-163685197 7.36e-03 13_[+2(9.47e-05)]_17_[+2(9.47e-05)]_\ 8_[+2(9.47e-05)]_18 chr17:30570481-30570561 7.38e-01 80 chr2:86095160-86095240 4.70e-01 80 chr19:55236313-55236393 1.63e-01 80 chr1:236517868-236517948 8.35e-01 80 chr7:29789750-29789830 1.23e-01 80 chr8:37356597-37356677 4.31e-02 80 chr14:24583564-24583644 9.24e-02 4_[+5(6.94e-05)]_68 chr17:76971191-76971271 6.06e-01 80 chr3:67068637-67068717 3.38e-01 47_[+4(6.15e-05)]_25 chr3:165659268-165659348 1.94e-03 10_[+3(9.37e-05)]_53_[+3(9.37e-05)]_\ 1 chr17:30228096-30228176 6.42e-03 55_[+5(6.60e-07)]_17 chr5:162885986-162886066 7.79e-01 80 chr1:27125982-27126062 9.94e-01 80 chr17:47100168-47100248 4.90e-03 4_[+4(3.58e-06)]_68 chr6:16189078-16189158 1.93e-03 69_[+3(9.37e-05)]_3 chr1:145575953-145576033 2.42e-02 8_[+4(7.15e-05)]_28_[+5(9.26e-05)]_\ 28 chr5:78474572-78474652 1.13e-02 80 chr19:56159382-56159462 1.70e-02 66_[+5(1.47e-05)]_6 chr19:18439578-18439658 2.77e-01 80 chrX:66719784-66719864 2.24e-02 80 chr12:56635660-56635740 3.37e-02 43_[+4(5.13e-06)]_29 chr7:116671463-116671543 2.62e-01 29_[+1(4.13e-05)]_22_[+1(4.13e-05)]_\ 13 chr10:88511487-88511567 5.87e-01 80 chrX:2397418-2397498 2.74e-03 18_[+4(3.58e-06)]_40_[+5(9.26e-05)]_\ 6 chr8:20362239-20362319 2.17e-03 80 chr10:133741892-13374197 7.14e-02 31_[+4(1.90e-05)]_41 chr5:21833609-21833689 1.91e-02 80 chr11:76494112-76494192 7.02e-02 6_[+4(1.90e-05)]_66 chr12:6387230-6387310 9.21e-01 80 chr7:106412635-106412715 2.55e-03 80 chr13:50783082-50783162 3.39e-01 80 chr2:153786319-153786399 9.22e-03 17_[+1(4.13e-05)]_55 chr21:35123591-35123671 4.87e-01 80 chrX:2375392-2375472 1.98e-02 43_[+4(3.58e-06)]_29 chr6:28370147-28370227 3.47e-02 2_[+4(5.13e-06)]_70 chr10:106117649-10611772 2.62e-01 [+1(4.13e-05)]_14_[+1(4.13e-05)]_14_\ [+1(4.13e-05)]_14_[+1(4.13e-05)]_6 chr8:12417697-12417777 5.30e-01 80 chr1:59197003-59197083 1.10e-02 80 chr8:116547437-116547517 4.56e-02 80 chr16:86825069-86825149 1.57e-02 11_[+4(2.25e-05)]_61 chr5:415658-415738 2.21e-02 11_[+4(4.92e-05)]_26_[+4(4.92e-05)]_\ 27 chr10:115323068-11532314 8.49e-03 30_[+4(1.90e-05)]_42 chr14:77647903-77647983 4.97e-01 80 chr19:925535-925615 4.78e-03 34_[+5(6.25e-05)]_28_[+5(1.90e-06)]_\ 2 chr15:42894944-42895024 9.90e-01 80 chr19:51894427-51894507 4.70e-02 5_[+5(1.18e-05)]_67 chr11:123986014-12398609 9.25e-01 80 chr6:13847121-13847201 3.44e-02 26_[+5(2.26e-05)]_46 chr2:85788900-85788980 1.09e-02 21_[+5(2.89e-05)]_13_[+4(6.86e-05)]_\ 30 chr14:20705338-20705418 1.13e-01 80 chr12:1788738-1788818 1.78e-02 80 chr3:127309491-127309571 1.52e-01 7_[+5(7.69e-05)]_65 chr16:17962719-17962799 3.27e-03 80 chr12:8085973-8086053 1.39e-02 6_[+4(3.23e-05)]_66 chr3:16445893-16445973 1.56e-02 80 chr1:151689411-151689491 3.06e-01 22_[+5(7.69e-05)]_35_[+5(7.69e-05)]_\ 7 chr12:217201-217281 1.32e-01 56_[+5(5.87e-05)]_4_[+5(5.87e-05)]_\ 4 chrX:2392814-2392894 5.25e-04 3_[+5(3.51e-05)]_42_[+5(3.51e-05)]_\ 8_[+4(3.58e-06)]_3 chr1:76351519-76351599 1.62e-02 80 chr15:43398212-43398292 3.86e-02 40_[+5(4.36e-06)]_32 chr2:58364081-58364161 1.92e-03 1_[+1(4.13e-05)]_7_[+2(9.47e-05)]_6_\ [+2(9.47e-05)]_11_[+2(9.47e-05)]_23 chr7:27882030-27882110 9.12e-01 80 chr6:53480636-53480716 8.57e-02 6_[+4(3.23e-05)]_66 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n06.farnam.hpc.yale.internal ********************************************************************************