******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/MYNN.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr16:24113588-24113668 1.0000 80 chr4:169753115-169753195 1.0000 80 chr15:42411247-42411327 1.0000 80 chr11:118799935-11880001 1.0000 80 chr5:175869030-175869110 1.0000 80 chr1:155349578-155349658 1.0000 80 chr19:17865990-17866070 1.0000 80 chr12:109592112-10959219 1.0000 80 chr17:40518833-40518913 1.0000 80 chr17:40594392-40594472 1.0000 80 chr5:137203430-137203510 1.0000 80 chr3:17472217-17472297 1.0000 80 chr4:103753501-103753581 1.0000 80 chr17:80550888-80550968 1.0000 80 chr7:67080014-67080094 1.0000 80 chr12:116720662-11672074 1.0000 80 chr10:115479352-11547943 1.0000 80 chr7:1766918-1766998 1.0000 80 chr1:204119858-204119938 1.0000 80 chr3:28384048-28384128 1.0000 80 chr3:11623845-11623925 1.0000 80 chr3:57262599-57262679 1.0000 80 chr9:127458619-127458699 1.0000 80 chr5:64808096-64808176 1.0000 80 chr7:142503771-142503851 1.0000 80 chr2:203967184-203967264 1.0000 80 chr11:63672783-63672863 1.0000 80 chr19:4554874-4554954 1.0000 80 chr7:95239035-95239115 1.0000 80 chr6:33619341-33619421 1.0000 80 chr12:32086642-32086722 1.0000 80 chr3:154753550-154753630 1.0000 80 chr13:50074595-50074675 1.0000 80 chrX:22060392-22060472 1.0000 80 chr3:43020698-43020778 1.0000 80 chr12:113569443-11356952 1.0000 80 chr3:196949821-196949901 1.0000 80 chr6:125397647-125397727 1.0000 80 chr14:100905808-10090588 1.0000 80 chr3:113462243-113462323 1.0000 80 chr6:107431523-107431603 1.0000 80 chr15:57551784-57551864 1.0000 80 chr17:80551155-80551235 1.0000 80 chr1:17542689-17542769 1.0000 80 chr5:78993206-78993286 1.0000 80 chr3:150137897-150137977 1.0000 80 chr1:198607211-198607291 1.0000 80 chr1:113218773-113218853 1.0000 80 chr19:51059284-51059364 1.0000 80 chrX:128631279-128631359 1.0000 80 chr1:12679533-12679613 1.0000 80 chr12:94613826-94613906 1.0000 80 chr14:70322054-70322134 1.0000 80 chr8:30659343-30659423 1.0000 80 chr1:53391266-53391346 1.0000 80 chr5:692394-692474 1.0000 80 chr7:149325115-149325195 1.0000 80 chr19:10204634-10204714 1.0000 80 chr2:122247054-122247134 1.0000 80 chr18:28825240-28825320 1.0000 80 chr6:157138713-157138793 1.0000 80 chr1:211721223-211721303 1.0000 80 chr9:136029202-136029282 1.0000 80 chr16:12861987-12862067 1.0000 80 chr9:79331404-79331484 1.0000 80 chr1:223417160-223417240 1.0000 80 chr18:10015344-10015424 1.0000 80 chr2:197471998-197472078 1.0000 80 chr5:34032256-34032336 1.0000 80 chr20:55393567-55393647 1.0000 80 chr17:33917622-33917702 1.0000 80 chr12:50643727-50643807 1.0000 80 chr19:55737096-55737176 1.0000 80 chr5:38505659-38505739 1.0000 80 chr15:64889517-64889597 1.0000 80 chr5:149598918-149598998 1.0000 80 chr7:108206588-108206668 1.0000 80 chr4:48339947-48340027 1.0000 80 chr5:39193759-39193839 1.0000 80 chr1:71343249-71343329 1.0000 80 chr2:113442898-113442978 1.0000 80 chr3:14224669-14224749 1.0000 80 chr3:172235862-172235942 1.0000 80 chr20:55820063-55820143 1.0000 80 chr19:871682-871762 1.0000 80 chr1:197171134-197171214 1.0000 80 chr20:45991207-45991287 1.0000 80 chr17:53288430-53288510 1.0000 80 chr3:12758146-12758226 1.0000 80 chr10:91536581-91536661 1.0000 80 chr3:14250773-14250853 1.0000 80 chr17:16190028-16190108 1.0000 80 chr6:159477286-159477366 1.0000 80 chr20:34421325-34421405 1.0000 80 chr5:55471385-55471465 1.0000 80 chr18:19216863-19216943 1.0000 80 chr1:241933603-241933683 1.0000 80 chr16:46773879-46773959 1.0000 80 chr5:55289652-55289732 1.0000 80 chr20:51041840-51041920 1.0000 80 chr3:4869698-4869778 1.0000 80 chr1:93257323-93257403 1.0000 80 chr11:46849709-46849789 1.0000 80 chr11:60760622-60760702 1.0000 80 chr8:29028698-29028778 1.0000 80 chr12:7281496-7281576 1.0000 80 chr14:91815574-91815654 1.0000 80 chr11:46128507-46128587 1.0000 80 chr12:121974469-12197454 1.0000 80 chr2:47177532-47177612 1.0000 80 chr4:81355451-81355531 1.0000 80 chr9:100749973-100750053 1.0000 80 chr9:98027659-98027739 1.0000 80 chr1:33373231-33373311 1.0000 80 chr19:4768964-4769044 1.0000 80 chr10:72701135-72701215 1.0000 80 chr2:27170231-27170311 1.0000 80 chr19:14193524-14193604 1.0000 80 chr3:122221126-122221206 1.0000 80 chr7:2759869-2759949 1.0000 80 chr5:138514798-138514878 1.0000 80 chr16:4026523-4026603 1.0000 80 chrX:37853213-37853293 1.0000 80 chr22:31113631-31113711 1.0000 80 chr1:90167498-90167578 1.0000 80 chr11:118798417-11879849 1.0000 80 chr1:33607536-33607616 1.0000 80 chr11:57481469-57481549 1.0000 80 chr8:125538966-125539046 1.0000 80 chr2:183460512-183460592 1.0000 80 chr17:58150578-58150658 1.0000 80 chr8:100020596-100020676 1.0000 80 chr2:157196009-157196089 1.0000 80 chr13:115077594-11507767 1.0000 80 chr8:125622622-125622702 1.0000 80 chr17:79680414-79680494 1.0000 80 chr21:17170036-17170116 1.0000 80 chr8:99539032-99539112 1.0000 80 chr12:118831815-11883189 1.0000 80 chr8:99938263-99938343 1.0000 80 chr22:24530270-24530350 1.0000 80 chr3:152005849-152005929 1.0000 80 chr6:49621312-49621392 1.0000 80 chr15:87883758-87883838 1.0000 80 chr11:5146609-5146689 1.0000 80 chrX:71314891-71314971 1.0000 80 chr17:79378723-79378803 1.0000 80 chr19:10205177-10205257 1.0000 80 chr1:154968306-154968386 1.0000 80 chr5:43193551-43193631 1.0000 80 chr1:1121024-1121104 1.0000 80 chr10:15560489-15560569 1.0000 80 chr12:105006399-10500647 1.0000 80 chr5:32563140-32563220 1.0000 80 chr1:100814962-100815042 1.0000 80 chr12:7275666-7275746 1.0000 80 chr13:115017503-11501758 1.0000 80 chr4:169733090-169733170 1.0000 80 chr6:27764083-27764163 1.0000 80 chr19:19517289-19517369 1.0000 80 chr7:38368574-38368654 1.0000 80 chr7:39074934-39075014 1.0000 80 chr19:54684060-54684140 1.0000 80 chr1:4546095-4546175 1.0000 80 chr6:15987933-15988013 1.0000 80 chr9:97344176-97344256 1.0000 80 chr19:10203970-10204050 1.0000 80 chr19:45651577-45651657 1.0000 80 chr10:73600016-73600096 1.0000 80 chr5:78795845-78795925 1.0000 80 chr1:89594648-89594728 1.0000 80 chr1:223418290-223418370 1.0000 80 chr1:201644529-201644609 1.0000 80 chr6:31036735-31036815 1.0000 80 chr8:99283905-99283985 1.0000 80 chr8:26986340-26986420 1.0000 80 chr5:118395839-118395919 1.0000 80 chr7:156635594-156635674 1.0000 80 chr7:30815772-30815852 1.0000 80 chr17:7117360-7117440 1.0000 80 chr2:179313741-179313821 1.0000 80 chr7:24517603-24517683 1.0000 80 chr7:16503276-16503356 1.0000 80 chr7:22214011-22214091 1.0000 80 chr11:66104273-66104353 1.0000 80 chr7:112724639-112724719 1.0000 80 chr2:201630367-201630447 1.0000 80 chr20:43223466-43223546 1.0000 80 chr1:54821740-54821820 1.0000 80 chr15:48950548-48950628 1.0000 80 chr12:1193153-1193233 1.0000 80 chr11:118796677-11879675 1.0000 80 chr7:12767890-12767970 1.0000 80 chr5:138517286-138517366 1.0000 80 chr4:183184871-183184951 1.0000 80 chr6:43020956-43021036 1.0000 80 chr6:107367663-107367743 1.0000 80 chr8:125661503-125661583 1.0000 80 chr3:24347468-24347548 1.0000 80 chr20:55669712-55669792 1.0000 80 chr6:2739719-2739799 1.0000 80 chr3:126074983-126075063 1.0000 80 chr11:125387189-12538726 1.0000 80 chr1:61567331-61567411 1.0000 80 chr12:68673324-68673404 1.0000 80 chr1:113221386-113221466 1.0000 80 chr2:162065125-162065205 1.0000 80 chr6:41283856-41283936 1.0000 80 chr3:34304704-34304784 1.0000 80 chr1:150584062-150584142 1.0000 80 chr19:21326406-21326486 1.0000 80 chr1:207186825-207186905 1.0000 80 chr3:4468526-4468606 1.0000 80 chr21:48023331-48023411 1.0000 80 chr7:134832250-134832330 1.0000 80 chr19:17866892-17866972 1.0000 80 chr19:47940063-47940143 1.0000 80 chr8:102219744-102219824 1.0000 80 chr16:23875188-23875268 1.0000 80 chr10:25305068-25305148 1.0000 80 chr1:19797646-19797726 1.0000 80 chr6:16006346-16006426 1.0000 80 chr19:45731697-45731777 1.0000 80 chrX:86773699-86773779 1.0000 80 chr7:26505786-26505866 1.0000 80 chr6:28740412-28740492 1.0000 80 chr1:95587953-95588033 1.0000 80 chr9:4986916-4986996 1.0000 80 chr11:12528070-12528150 1.0000 80 chr7:115898907-115898987 1.0000 80 chr11:28365065-28365145 1.0000 80 chr8:26482894-26482974 1.0000 80 chrX:48900805-48900885 1.0000 80 chr12:76507608-76507688 1.0000 80 chr11:71659774-71659854 1.0000 80 chr1:150848129-150848209 1.0000 80 chr1:94313701-94313781 1.0000 80 chr1:100817833-100817913 1.0000 80 chr1:26962324-26962404 1.0000 80 chr5:109028770-109028850 1.0000 80 chr5:53682007-53682087 1.0000 80 chrX:109132573-109132653 1.0000 80 chr11:61248545-61248625 1.0000 80 chr4:87940527-87940607 1.0000 80 chr10:76349160-76349240 1.0000 80 chr1:93252206-93252286 1.0000 80 chr19:36451504-36451584 1.0000 80 chr19:55690768-55690848 1.0000 80 chr5:128432488-128432568 1.0000 80 chr6:89229368-89229448 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_MYNN/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/MYNN.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.272 C 0.231 G 0.227 T 0.27 Background letter frequencies (from file dataset with add-one prior applied): A 0.272 C 0.231 G 0.227 T 0.27 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AATAARAG MEME-1 width = 8 sites = 116 llr = 907 E-value = 1.9e-082 ******************************************************************************** -------------------------------------------------------------------------------- Motif AATAARAG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 87:a96a: pos.-specific C :::::::: probability G 11::14:a matrix T 12a::::: bits 2.1 * 1.9 * ** 1.7 ** ** 1.5 *** ** Relative 1.3 *** ** Entropy 1.1 *** ** (11.3 bits) 0.9 ****** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AATAAAAG consensus T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATAARAG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:115898907-115898987 44 2.48e-05 CCCAAACGAA AATAAAAG TCTGCCTCTG chrX:86773699-86773779 17 2.48e-05 ACTTTAACAA AATAAAAG CTGTGACTGA chr1:19797646-19797726 6 2.48e-05 accat aataaaag ctacgtgcat chr16:23875188-23875268 70 2.48e-05 TCTTTGTTTA AATAAAAG AGG chr7:134832250-134832330 17 2.48e-05 TGCTTACAAA AATAAAAG CTTTGTTCGG chr20:55669712-55669792 56 2.48e-05 TCCTCACCAG AATAAAAG TCCCCACTGC chr7:12767890-12767970 10 2.48e-05 GGAAAGCAA AATAAAAG CACCCATTGG chr15:48950548-48950628 46 2.48e-05 cccatttcaa aataaaag acaagacatt chr8:26986340-26986420 59 2.48e-05 GTATTTTAAT AATAAAAG TCCTTCTGCC chr6:15987933-15988013 42 2.48e-05 TGTGCCTTTG AATAAAAG GGCCTCGCTA chr1:4546095-4546175 46 2.48e-05 ATAAAAGTTA AATAAAAG TCCCTGCAGC chr10:15560489-15560569 38 2.48e-05 ATTGTTTCAA AATAAAAG CGCACTATGA chr3:152005849-152005929 35 2.48e-05 ACATTGTCAA AATAAAAG CGTTGGTAAT chr1:33607536-33607616 2 2.48e-05 A AATAAAAG TACTTCCCCC chr16:4026523-4026603 58 2.48e-05 AGGATTTCAA AATAAAAG ACCTATGTTC chr5:138514798-138514878 33 2.48e-05 AGGCTTCCAA AATAAAAG TTCCCAGCAC chr9:98027659-98027739 34 2.48e-05 TTGGCTTCAA AATAAAAG CATCCCTTCA chr9:100749973-100750053 51 2.48e-05 catataccaa aataaaag tctttacgta chr2:47177532-47177612 37 2.48e-05 ACCATGCCAA AATAAAAG ACTCCATGCC chr6:159477286-159477366 11 2.48e-05 TGCTTCCTTA AATAAAAG CCACTTAGTT chr3:14250773-14250853 28 2.48e-05 attatgtcaa aataaaaG TCATGTCCCC chr3:12758146-12758226 40 2.48e-05 cccatttcaa aataaaag cttggtctgg chr1:211721223-211721303 42 2.48e-05 tctctttcag aataaaag ccagcgtgca chr12:94613826-94613906 53 2.48e-05 GCTCTGCCAG AATAAAAG TCAGCCCAAC chrX:128631279-128631359 43 2.48e-05 ctgccttcaa aataaaag tcctaactcc chr19:51059284-51059364 30 2.48e-05 ATGCTTTCAA AATAAAAG CAGCCCCACA chr6:33619341-33619421 35 2.48e-05 AAGCTGTCAA AATAAAAG TCCATGCTTC chr11:63672783-63672863 26 2.48e-05 CAGATGCTAA AATAAAAG CCCCCCCTTC chr9:127458619-127458699 45 2.48e-05 TGTTTTTCAA AATAAAAG CCTACTGGCT chr3:57262599-57262679 37 2.48e-05 AACTCATCAA AATAAAAG CCCTGTGTTC chr3:11623845-11623925 38 2.48e-05 CGCTTGTCAG AATAAAAG TCCTCCCTGA chr12:109592112-10959219 12 2.48e-05 GACTTTGGGA AATAAAAG TCGACTTGAC chr16:24113588-24113668 25 2.48e-05 ACTTTTCCAA AATAAAAG CCCTCTGCAG chrX:48900805-48900885 10 4.55e-05 CCCTAACAA AATAAGAG TCCCCCCTCC chr6:16006346-16006426 32 4.55e-05 CCTTTGAAAA AATAAGAG CTCTTTGATG chr3:126074983-126075063 45 4.55e-05 TGTCCTTCAA AATAAGAG TCTCCGGTCC chr11:118796677-11879675 25 4.55e-05 CCCCTGTCAA AATAAGAG CTCCCCCATC chr19:19517289-19517369 12 4.55e-05 CCCGTGTCAG AATAAGAG TCCCCGCGCG chr5:43193551-43193631 39 4.55e-05 CCCGTTTCAA AATAAGAG CGAATGAATC chr17:79378723-79378803 41 4.55e-05 TCCCCACGAA AATAAGAG TCCCCAGAAC chr17:58150578-58150658 71 4.55e-05 TACTAAGAAA AATAAGAG TC chr12:7281496-7281576 38 4.55e-05 GCCCTGTTGC AATAAGAG TCCCTACCAG chr20:55820063-55820143 36 4.55e-05 TCCCTTTCAA AATAAGAG TCTTCTTTAA chr7:108206588-108206668 16 4.55e-05 ATCCCTACCA AATAAGAG CATCTTCATG chr18:28825240-28825320 43 4.55e-05 TGAATGTCAA AATAAGAG CTCACCTACT chr19:10204634-10204714 15 4.55e-05 CTCTCACCAG AATAAGAG TTCTGCCTCT chr14:100905808-10090588 38 4.55e-05 AAGCCGTCAA AATAAGAG CCTTTGCCTG chr7:142503771-142503851 31 4.55e-05 GTGATTTCAT AATAAGAG TTTGAGATAA chr3:28384048-28384128 15 4.55e-05 GATATTCCAA AATAAGAG CAAACATCAT chr12:116720662-11672074 44 4.55e-05 gtcgcttcag aataagag acacctgggt chr7:67080014-67080094 41 4.55e-05 GTAATTTCAA AATAAGAG TTTTTCTTCA chr17:40594392-40594472 40 4.55e-05 atcctatcaa aataagag ccacagagag chr17:40518833-40518913 33 4.55e-05 atcctttcaa aataagag tcCTGGCTgg chr19:45731697-45731777 40 7.02e-05 ggaaCTTCAT ATTAAAAG TCTGGTTTgg chr12:50643727-50643807 48 7.02e-05 GCCATTTCAC ATTAAAAG TCCTGGGTCA chr2:197471998-197472078 16 7.02e-05 TAGCTTGTTG ATTAAAAG CAGCCTCTTA chr1:26962324-26962404 36 9.07e-05 aacccttagg attaagag tccccttgta chr6:28740412-28740492 12 9.07e-05 caaatgccaa attaagag cacggctatt chr13:115077594-11507767 45 9.07e-05 CCTGTTTCAT ATTAAGAG TCAGGATCTC chr5:55289652-55289732 34 9.07e-05 GTAATTTCAA ATTAAGAG TTGTTCCAAC chr18:19216863-19216943 12 9.07e-05 GATGTTTCCA ATTAAGAG TCACTTCCAT chr20:34421325-34421405 36 9.07e-05 TCCCCTCCAA ATTAAGAG TTCCCATACT chr2:122247054-122247134 51 9.07e-05 AAGACAACAA ATTAAGAG TCTGCCAGCA chr3:113462243-113462323 30 9.07e-05 GCCATTCCAA ATTAAGAG TCAGGACTTT chr3:24347468-24347548 60 1.11e-04 CATGTTTCAA AGTAAAAG TCCTTCAATT chr8:125661503-125661583 32 1.11e-04 ggcctttcac agtaaaag ttttccCTGT chr21:48023331-48023411 16 1.29e-04 CAGCTGTCAA AGTAAGAG CCCCCCTACC chr1:113221386-113221466 37 1.29e-04 aaaatttcaa agtaagag tctgacgtaa chr19:10205177-10205257 69 1.29e-04 GCCTCACTAA AGTAAGAG TCCC chr1:155349578-155349658 63 1.29e-04 GCTATTTTGC AGTAAGAG TAAAGGCAAA chr12:1193153-1193233 10 1.53e-04 ATGTGTGCT TATAAAAG TCCTTGGCAG chr7:16503276-16503356 7 1.53e-04 AAAGAA TATAAAAG CCCCTAAATC chr3:4869698-4869778 32 1.53e-04 AGCTTTCCAG TATAAAAG CCCATCAGAT chr4:48339947-48340027 19 1.53e-04 CTTGTAGCTA TATAAAAG TCACTCTTAG chr1:201644529-201644609 60 1.95e-04 ATGGTAGAGA GATAAAAG TCCCTGCTTT chr12:105006399-10500647 36 1.95e-04 CGGCTTTTGA GATAAAAG TCCTTCTGTT chr1:89594648-89594728 59 2.33e-04 GTTATTTCAA AATAGAAG CAATTCTAGG chr13:115017503-11501758 64 2.33e-04 AGCCCTGTTG GATAAGAG CCCTACACT chr12:118831815-11883189 47 2.33e-04 ACAATGTCAA AATAGAAG TCTGTTTCCC chr1:90167498-90167578 16 2.33e-04 CACCAAGCAA GATAAGAG ACTGGAGCCT chr20:55393567-55393647 35 2.33e-04 GTCATGTCAA AATAGAAG TAATTCCTTT chr9:136029202-136029282 28 2.33e-04 GCCCCACCAT AATAGAAG TCCCCTTCGC chr3:150137897-150137977 42 2.33e-04 GCCATTCCAA AATAGAAG TCTCTCTGAT chr8:99283905-99283985 51 2.50e-04 ttttatgttg aataggag tggttagagt chr19:10203970-10204050 58 2.50e-04 TCCTTACCAG AATAGGAG TCTCGGTCCC chr1:93252206-93252286 49 2.71e-04 actttttcaa aataacag tgtgaccctg chr12:113569443-11356952 38 2.71e-04 CCCCCTTCAT AATAACAG TCACCAGCAA chr7:30815772-30815852 52 2.92e-04 cttcccattt cataaaag cccacaagac chr5:39193759-39193839 32 2.92e-04 AATCCTTCAG CATAAAAG TCCTAAATAC chr9:79331404-79331484 49 2.92e-04 GCAACCTCAT CATAAAAG TCCCCTTAGG chr7:26505786-26505866 52 3.17e-04 tgacttttat tttaaaag agttgctctg chr7:22214011-22214091 6 3.17e-04 CAAAA tttaaaag tcagaagatc chr6:49621312-49621392 14 3.17e-04 TACCTTTCAT TTTAAAAG CGCTTTGTAG chr1:17542689-17542769 29 3.17e-04 ggacttctat tttaaaag gtccctctgg chrX:109132573-109132653 31 3.75e-04 GGTGGGGACT TTTAAGAG GAAGTGAGAC chr3:34304704-34304784 35 3.75e-04 CTTTTATTTT GTTAAAAG GAGCTTTATT chr5:78795845-78795925 59 3.75e-04 accatttcaa gttaaaag aacccagagt chr11:5146609-5146689 28 3.75e-04 atcccttcat gttaaaag tcctcaacaa chr4:81355451-81355531 11 3.96e-04 cttctccctt aatgaaag gactcttgtt chr6:43020956-43021036 49 4.34e-04 AGATCGCAGA GTTAAGAG ACCTGAGAAC chr1:54821740-54821820 31 4.34e-04 CACCTACCAG ATTAGAAG GCCTGTTGCT chr8:29028698-29028778 4 4.34e-04 CAC GTTAAGAG GCCCACATTT chr1:100814962-100815042 18 4.71e-04 CCTTGTAGAC TGTAAAAG TATGCCTTTA chr15:64889517-64889597 5 4.71e-04 GACA AATGAGAG CAGCTCAGGG chr13:50074595-50074675 61 4.71e-04 GAGATGCCTG TGTAAAAG TCCTCAGTGT chr2:183460512-183460592 47 4.89e-04 CGGAATAAAG ATTAGGAG GGTGAGGAGA chr5:128432488-128432568 63 5.44e-04 GCCCCAGCTC TGTAAGAG TCCCCGCCTT chr1:241933603-241933683 25 5.44e-04 GCCATTTCAG TGTAAGAG CCTCTGGGAC chr3:154753550-154753630 49 5.44e-04 cattggccat tgtaagag aggtgtctct chr11:46128507-46128587 17 5.65e-04 ATCACTCCAA CTTAAAAG TCCCACACCT chr15:87883758-87883838 5 6.87e-04 AGTG AGTAACAG AAGGAGACTT chr20:51041840-51041920 27 6.87e-04 TGACTTTTAA ATTGAAAG GAAAACCTTA chr20:45991207-45991287 62 6.87e-04 cctatttctc agtaacag cccaagtcca chr2:203967184-203967264 71 6.87e-04 gctgaatttt attgaaag cc chr5:34032256-34032336 8 7.56e-04 caatgct gatagaag tcccccagag chr19:55737096-55737176 46 7.92e-04 CCCTCTCTGT CGTAAGAG TCCCTAAATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATAARAG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:115898907-115898987 2.5e-05 43_[+1]_29 chrX:86773699-86773779 2.5e-05 16_[+1]_56 chr1:19797646-19797726 2.5e-05 5_[+1]_67 chr16:23875188-23875268 2.5e-05 69_[+1]_3 chr7:134832250-134832330 2.5e-05 16_[+1]_56 chr20:55669712-55669792 2.5e-05 55_[+1]_17 chr7:12767890-12767970 2.5e-05 9_[+1]_63 chr15:48950548-48950628 2.5e-05 45_[+1]_27 chr8:26986340-26986420 2.5e-05 58_[+1]_14 chr6:15987933-15988013 2.5e-05 41_[+1]_31 chr1:4546095-4546175 2.5e-05 45_[+1]_27 chr10:15560489-15560569 2.5e-05 37_[+1]_35 chr3:152005849-152005929 2.5e-05 34_[+1]_38 chr1:33607536-33607616 2.5e-05 1_[+1]_71 chr16:4026523-4026603 2.5e-05 57_[+1]_15 chr5:138514798-138514878 2.5e-05 32_[+1]_40 chr9:98027659-98027739 2.5e-05 33_[+1]_39 chr9:100749973-100750053 2.5e-05 50_[+1]_22 chr2:47177532-47177612 2.5e-05 36_[+1]_36 chr6:159477286-159477366 2.5e-05 10_[+1]_62 chr3:14250773-14250853 2.5e-05 27_[+1]_45 chr3:12758146-12758226 2.5e-05 39_[+1]_33 chr1:211721223-211721303 2.5e-05 41_[+1]_31 chr12:94613826-94613906 2.5e-05 52_[+1]_20 chrX:128631279-128631359 2.5e-05 42_[+1]_30 chr19:51059284-51059364 2.5e-05 29_[+1]_43 chr6:33619341-33619421 2.5e-05 34_[+1]_38 chr11:63672783-63672863 2.5e-05 25_[+1]_47 chr9:127458619-127458699 2.5e-05 44_[+1]_28 chr3:57262599-57262679 2.5e-05 36_[+1]_36 chr3:11623845-11623925 2.5e-05 37_[+1]_35 chr12:109592112-10959219 2.5e-05 11_[+1]_61 chr16:24113588-24113668 2.5e-05 24_[+1]_48 chrX:48900805-48900885 4.6e-05 9_[+1]_63 chr6:16006346-16006426 4.6e-05 31_[+1]_41 chr3:126074983-126075063 4.6e-05 44_[+1]_28 chr11:118796677-11879675 4.6e-05 24_[+1]_48 chr19:19517289-19517369 4.6e-05 11_[+1]_61 chr5:43193551-43193631 4.6e-05 38_[+1]_34 chr17:79378723-79378803 4.6e-05 40_[+1]_32 chr17:58150578-58150658 4.6e-05 70_[+1]_2 chr12:7281496-7281576 4.6e-05 37_[+1]_35 chr20:55820063-55820143 4.6e-05 35_[+1]_37 chr7:108206588-108206668 4.6e-05 15_[+1]_57 chr18:28825240-28825320 4.6e-05 42_[+1]_30 chr19:10204634-10204714 4.6e-05 14_[+1]_58 chr14:100905808-10090588 4.6e-05 37_[+1]_35 chr7:142503771-142503851 4.6e-05 30_[+1]_42 chr3:28384048-28384128 4.6e-05 14_[+1]_58 chr12:116720662-11672074 4.6e-05 43_[+1]_29 chr7:67080014-67080094 4.6e-05 40_[+1]_32 chr17:40594392-40594472 4.6e-05 39_[+1]_33 chr17:40518833-40518913 4.6e-05 32_[+1]_40 chr19:45731697-45731777 7e-05 39_[+1]_33 chr12:50643727-50643807 7e-05 47_[+1]_25 chr2:197471998-197472078 7e-05 15_[+1]_57 chr1:26962324-26962404 9.1e-05 35_[+1]_37 chr6:28740412-28740492 9.1e-05 11_[+1]_61 chr13:115077594-11507767 9.1e-05 44_[+1]_28 chr5:55289652-55289732 9.1e-05 33_[+1]_39 chr18:19216863-19216943 9.1e-05 11_[+1]_61 chr20:34421325-34421405 9.1e-05 35_[+1]_37 chr2:122247054-122247134 9.1e-05 50_[+1]_22 chr3:113462243-113462323 9.1e-05 29_[+1]_43 chr3:24347468-24347548 0.00011 59_[+1]_13 chr8:125661503-125661583 0.00011 31_[+1]_41 chr21:48023331-48023411 0.00013 15_[+1]_57 chr1:113221386-113221466 0.00013 36_[+1]_36 chr19:10205177-10205257 0.00013 68_[+1]_4 chr1:155349578-155349658 0.00013 62_[+1]_10 chr12:1193153-1193233 0.00015 9_[+1]_63 chr7:16503276-16503356 0.00015 6_[+1]_66 chr3:4869698-4869778 0.00015 31_[+1]_41 chr4:48339947-48340027 0.00015 18_[+1]_54 chr1:201644529-201644609 0.00019 59_[+1]_13 chr12:105006399-10500647 0.00019 35_[+1]_37 chr1:89594648-89594728 0.00023 58_[+1]_14 chr13:115017503-11501758 0.00023 63_[+1]_9 chr12:118831815-11883189 0.00023 46_[+1]_26 chr1:90167498-90167578 0.00023 15_[+1]_57 chr20:55393567-55393647 0.00023 34_[+1]_38 chr9:136029202-136029282 0.00023 27_[+1]_45 chr3:150137897-150137977 0.00023 41_[+1]_31 chr8:99283905-99283985 0.00025 50_[+1]_22 chr19:10203970-10204050 0.00025 57_[+1]_15 chr1:93252206-93252286 0.00027 48_[+1]_24 chr12:113569443-11356952 0.00027 37_[+1]_35 chr7:30815772-30815852 0.00029 51_[+1]_21 chr5:39193759-39193839 0.00029 31_[+1]_41 chr9:79331404-79331484 0.00029 48_[+1]_24 chr7:26505786-26505866 0.00032 51_[+1]_21 chr7:22214011-22214091 0.00032 5_[+1]_67 chr6:49621312-49621392 0.00032 13_[+1]_59 chr1:17542689-17542769 0.00032 28_[+1]_44 chrX:109132573-109132653 0.00038 30_[+1]_42 chr3:34304704-34304784 0.00038 34_[+1]_38 chr5:78795845-78795925 0.00038 58_[+1]_14 chr11:5146609-5146689 0.00038 27_[+1]_45 chr4:81355451-81355531 0.0004 10_[+1]_62 chr6:43020956-43021036 0.00043 48_[+1]_24 chr1:54821740-54821820 0.00043 30_[+1]_42 chr8:29028698-29028778 0.00043 3_[+1]_69 chr1:100814962-100815042 0.00047 17_[+1]_55 chr15:64889517-64889597 0.00047 4_[+1]_68 chr13:50074595-50074675 0.00047 60_[+1]_12 chr2:183460512-183460592 0.00049 46_[+1]_26 chr5:128432488-128432568 0.00054 62_[+1]_10 chr1:241933603-241933683 0.00054 24_[+1]_48 chr3:154753550-154753630 0.00054 48_[+1]_24 chr11:46128507-46128587 0.00056 16_[+1]_56 chr15:87883758-87883838 0.00069 4_[+1]_68 chr20:51041840-51041920 0.00069 26_[+1]_46 chr20:45991207-45991287 0.00069 61_[+1]_11 chr2:203967184-203967264 0.00069 70_[+1]_2 chr5:34032256-34032336 0.00076 7_[+1]_65 chr19:55737096-55737176 0.00079 45_[+1]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATAARAG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AATAARAG width=8 seqs=116 chr7:115898907-115898987 ( 44) AATAAAAG 1 chrX:86773699-86773779 ( 17) AATAAAAG 1 chr1:19797646-19797726 ( 6) AATAAAAG 1 chr16:23875188-23875268 ( 70) AATAAAAG 1 chr7:134832250-134832330 ( 17) AATAAAAG 1 chr20:55669712-55669792 ( 56) AATAAAAG 1 chr7:12767890-12767970 ( 10) AATAAAAG 1 chr15:48950548-48950628 ( 46) AATAAAAG 1 chr8:26986340-26986420 ( 59) AATAAAAG 1 chr6:15987933-15988013 ( 42) AATAAAAG 1 chr1:4546095-4546175 ( 46) AATAAAAG 1 chr10:15560489-15560569 ( 38) AATAAAAG 1 chr3:152005849-152005929 ( 35) AATAAAAG 1 chr1:33607536-33607616 ( 2) AATAAAAG 1 chr16:4026523-4026603 ( 58) AATAAAAG 1 chr5:138514798-138514878 ( 33) AATAAAAG 1 chr9:98027659-98027739 ( 34) AATAAAAG 1 chr9:100749973-100750053 ( 51) AATAAAAG 1 chr2:47177532-47177612 ( 37) AATAAAAG 1 chr6:159477286-159477366 ( 11) AATAAAAG 1 chr3:14250773-14250853 ( 28) AATAAAAG 1 chr3:12758146-12758226 ( 40) AATAAAAG 1 chr1:211721223-211721303 ( 42) AATAAAAG 1 chr12:94613826-94613906 ( 53) AATAAAAG 1 chrX:128631279-128631359 ( 43) AATAAAAG 1 chr19:51059284-51059364 ( 30) AATAAAAG 1 chr6:33619341-33619421 ( 35) AATAAAAG 1 chr11:63672783-63672863 ( 26) AATAAAAG 1 chr9:127458619-127458699 ( 45) AATAAAAG 1 chr3:57262599-57262679 ( 37) AATAAAAG 1 chr3:11623845-11623925 ( 38) AATAAAAG 1 chr12:109592112-10959219 ( 12) AATAAAAG 1 chr16:24113588-24113668 ( 25) AATAAAAG 1 chrX:48900805-48900885 ( 10) AATAAGAG 1 chr6:16006346-16006426 ( 32) AATAAGAG 1 chr3:126074983-126075063 ( 45) AATAAGAG 1 chr11:118796677-11879675 ( 25) AATAAGAG 1 chr19:19517289-19517369 ( 12) AATAAGAG 1 chr5:43193551-43193631 ( 39) AATAAGAG 1 chr17:79378723-79378803 ( 41) AATAAGAG 1 chr17:58150578-58150658 ( 71) AATAAGAG 1 chr12:7281496-7281576 ( 38) AATAAGAG 1 chr20:55820063-55820143 ( 36) AATAAGAG 1 chr7:108206588-108206668 ( 16) AATAAGAG 1 chr18:28825240-28825320 ( 43) AATAAGAG 1 chr19:10204634-10204714 ( 15) AATAAGAG 1 chr14:100905808-10090588 ( 38) AATAAGAG 1 chr7:142503771-142503851 ( 31) AATAAGAG 1 chr3:28384048-28384128 ( 15) AATAAGAG 1 chr12:116720662-11672074 ( 44) AATAAGAG 1 chr7:67080014-67080094 ( 41) AATAAGAG 1 chr17:40594392-40594472 ( 40) AATAAGAG 1 chr17:40518833-40518913 ( 33) AATAAGAG 1 chr19:45731697-45731777 ( 40) ATTAAAAG 1 chr12:50643727-50643807 ( 48) ATTAAAAG 1 chr2:197471998-197472078 ( 16) ATTAAAAG 1 chr1:26962324-26962404 ( 36) ATTAAGAG 1 chr6:28740412-28740492 ( 12) ATTAAGAG 1 chr13:115077594-11507767 ( 45) ATTAAGAG 1 chr5:55289652-55289732 ( 34) ATTAAGAG 1 chr18:19216863-19216943 ( 12) ATTAAGAG 1 chr20:34421325-34421405 ( 36) ATTAAGAG 1 chr2:122247054-122247134 ( 51) ATTAAGAG 1 chr3:113462243-113462323 ( 30) ATTAAGAG 1 chr3:24347468-24347548 ( 60) AGTAAAAG 1 chr8:125661503-125661583 ( 32) AGTAAAAG 1 chr21:48023331-48023411 ( 16) AGTAAGAG 1 chr1:113221386-113221466 ( 37) AGTAAGAG 1 chr19:10205177-10205257 ( 69) AGTAAGAG 1 chr1:155349578-155349658 ( 63) AGTAAGAG 1 chr12:1193153-1193233 ( 10) TATAAAAG 1 chr7:16503276-16503356 ( 7) TATAAAAG 1 chr3:4869698-4869778 ( 32) TATAAAAG 1 chr4:48339947-48340027 ( 19) TATAAAAG 1 chr1:201644529-201644609 ( 60) GATAAAAG 1 chr12:105006399-10500647 ( 36) GATAAAAG 1 chr1:89594648-89594728 ( 59) AATAGAAG 1 chr13:115017503-11501758 ( 64) GATAAGAG 1 chr12:118831815-11883189 ( 47) AATAGAAG 1 chr1:90167498-90167578 ( 16) GATAAGAG 1 chr20:55393567-55393647 ( 35) AATAGAAG 1 chr9:136029202-136029282 ( 28) AATAGAAG 1 chr3:150137897-150137977 ( 42) AATAGAAG 1 chr8:99283905-99283985 ( 51) AATAGGAG 1 chr19:10203970-10204050 ( 58) AATAGGAG 1 chr1:93252206-93252286 ( 49) AATAACAG 1 chr12:113569443-11356952 ( 38) AATAACAG 1 chr7:30815772-30815852 ( 52) CATAAAAG 1 chr5:39193759-39193839 ( 32) CATAAAAG 1 chr9:79331404-79331484 ( 49) CATAAAAG 1 chr7:26505786-26505866 ( 52) TTTAAAAG 1 chr7:22214011-22214091 ( 6) TTTAAAAG 1 chr6:49621312-49621392 ( 14) TTTAAAAG 1 chr1:17542689-17542769 ( 29) TTTAAAAG 1 chrX:109132573-109132653 ( 31) TTTAAGAG 1 chr3:34304704-34304784 ( 35) GTTAAAAG 1 chr5:78795845-78795925 ( 59) GTTAAAAG 1 chr11:5146609-5146689 ( 28) GTTAAAAG 1 chr4:81355451-81355531 ( 11) AATGAAAG 1 chr6:43020956-43021036 ( 49) GTTAAGAG 1 chr1:54821740-54821820 ( 31) ATTAGAAG 1 chr8:29028698-29028778 ( 4) GTTAAGAG 1 chr1:100814962-100815042 ( 18) TGTAAAAG 1 chr15:64889517-64889597 ( 5) AATGAGAG 1 chr13:50074595-50074675 ( 61) TGTAAAAG 1 chr2:183460512-183460592 ( 47) ATTAGGAG 1 chr5:128432488-128432568 ( 63) TGTAAGAG 1 chr1:241933603-241933683 ( 25) TGTAAGAG 1 chr3:154753550-154753630 ( 49) TGTAAGAG 1 chr11:46128507-46128587 ( 17) CTTAAAAG 1 chr15:87883758-87883838 ( 5) AGTAACAG 1 chr20:51041840-51041920 ( 27) ATTGAAAG 1 chr20:45991207-45991287 ( 62) AGTAACAG 1 chr2:203967184-203967264 ( 71) ATTGAAAG 1 chr5:34032256-34032336 ( 8) GATAGAAG 1 chr19:55737096-55737176 ( 46) CGTAAGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATAARAG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.54294 E= 1.9e-082 146 -242 -139 -116 127 -1350 -91 -27 -1350 -1350 -1350 189 183 -1350 -271 -1350 175 -1350 -139 -1350 109 -274 78 -1350 188 -1350 -1350 -1350 -1350 -1350 214 -1350 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATAARAG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 116 E= 1.9e-082 0.750000 0.043103 0.086207 0.120690 0.655172 0.000000 0.120690 0.224138 0.000000 0.000000 0.000000 1.000000 0.965517 0.000000 0.034483 0.000000 0.913793 0.000000 0.086207 0.000000 0.577586 0.034483 0.387931 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATAARAG MEME-1 regular expression -------------------------------------------------------------------------------- A[AT]TAA[AG]AG -------------------------------------------------------------------------------- Time 4.99 secs. ******************************************************************************** ******************************************************************************** MOTIF GACTYTTA MEME-2 width = 8 sites = 95 llr = 791 E-value = 5.4e-075 ******************************************************************************** -------------------------------------------------------------------------------- Motif GACTYTTA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 17:::::a pos.-specific C :1a:41:: probability G 82:::::: matrix T 1::a68a: bits 2.1 * 1.9 ** * 1.7 ** ** 1.5 ** ** Relative 1.3 * ** *** Entropy 1.1 * ****** (12.0 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GACTTTTA consensus G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACTYTTA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:89229368-89229448 32 2.06e-05 CACTGAACAT GACTTTTA TTTTGGTTTC chr4:87940527-87940607 32 2.06e-05 taagtctaaa gactttta ttccagagag chr7:26505786-26505866 43 2.06e-05 gacatgatct gactttta ttttaaaaga chr3:34304704-34304784 23 2.06e-05 GAATGCAGAG GACTTTTA TTTTGTTAAA chr1:61567331-61567411 49 2.06e-05 GCAGTCTCGA GACTTTTA CGCTGAAGTG chr8:99283905-99283985 38 2.06e-05 ctgtggatag gactttta tgttgaatag chr1:223418290-223418370 29 2.06e-05 CTAAATAGAT GACTTTTA AACTGAAATC chr6:27764083-27764163 41 2.06e-05 ttaggatttt gactttta ttctgaaatg chr12:7275666-7275746 37 2.06e-05 GGCCCCCTAG GACTTTTA TTCTGAAAGA chr1:1121024-1121104 27 2.06e-05 TTGGCCGAAG GACTTTTA TCTGTCTTGG chr15:87883758-87883838 42 2.06e-05 CCAAAGATGG GACTTTTA TTTTGAAAAC chr19:4768964-4769044 21 2.06e-05 GCAGATGCCA GACTTTTA TTCTGAAGCG chr20:51041840-51041920 18 2.06e-05 CTTCAAACAT GACTTTTA AATTGAAAGG chr1:241933603-241933683 73 2.06e-05 GGATAGGCAA GACTTTTA chr17:53288430-53288510 7 2.06e-05 ttttag gactttta tcgtgaaatg chr3:14224669-14224749 46 2.06e-05 GCTGACAAGT GACTTTTA TTTTGATGTG chr2:113442898-113442978 59 2.06e-05 AAAAACCTAA GACTTTTA TTTTGGACAG chr4:48339947-48340027 40 2.06e-05 CTCTTAGAGT GACTTTTA AAAACATGCT chr5:149598918-149598998 45 2.06e-05 tgaagaccag gactttta ttTTGCCATG chr14:70322054-70322134 37 2.06e-05 GGCAAGTGTA GACTTTTA TTTTGAAATA chr6:125397647-125397727 47 2.06e-05 TGCTGTGAGA GACTTTTA TTTTGGTGAA chr12:32086642-32086722 43 2.06e-05 TTAAGCCCAA GACTTTTA TTTTGAAATT chr10:115479352-11547943 68 2.06e-05 GCTGGGTTTT GACTTTTA TTTTG chr12:109592112-10959219 36 2.06e-05 TGACAACAGG GACTTTTA ACGGGCACAG chr19:17865990-17866070 58 2.06e-05 GGGCTGTGGG GACTTTTA TGGAGATGGG chr5:175869030-175869110 43 2.06e-05 gggcaatcca gactttta ttttggaagg chr1:94313701-94313781 28 3.83e-05 gtcactctgg gactctta attcggtccg chr12:68673324-68673404 45 3.83e-05 cagtggaggg gactctta tctaatgcta chr19:45651577-45651657 26 3.83e-05 CCACGGCTAG GACTCTTA TTTGGGCGAG chr7:38368574-38368654 21 3.83e-05 TGCccatttg gactctta ttttgaaatt chr8:99539032-99539112 36 3.83e-05 CAGTTTTCGT GACTCTTA TTCTTGAAGT chr22:31113631-31113711 41 3.83e-05 TGCTGGTTGA GACTCTTA TTTTGACACT chr10:72701135-72701215 47 3.83e-05 TGTGTAGGAA GACTCTTA CCCTGAAGGG chr17:33917622-33917702 39 3.83e-05 GAGCAGCAGG GACTCTTA ATTTAGAATC chr18:10015344-10015424 53 3.83e-05 GTCATGATCT GACTCTTA TTTTGTCCTC chr16:12861987-12862067 24 3.83e-05 CAACCAAAAG GACTCTTA AGACCTTTCT chr6:157138713-157138793 47 3.83e-05 gaccttgtct gactctta aaaaaaaaaa chr1:53391266-53391346 21 3.83e-05 GCCCTCTATG GACTCTTA TTTTGAAAGC chr8:30659343-30659423 38 3.83e-05 GCCCAGCCCA GACTCTTA ATTTGAAGCA chr1:113218773-113218853 36 3.83e-05 ACACTATGGG GACTCTTA AGATGAAAAA chr5:78993206-78993286 26 3.83e-05 GGCTGCTGAT GACTCTTA TCctagaagg chr19:4554874-4554954 30 3.83e-05 GCTCCTCTGG GACTCTTA TTCTGGTGGG chr5:64808096-64808176 39 3.83e-05 tgagaggagt gactctta ttttgaaagt chr3:17472217-17472297 31 3.83e-05 GACGATCCCA GACTCTTA TTTTGGAAGG chr5:137203430-137203510 17 3.83e-05 TTAGATTGTG GACTCTTA CTTTGACATG chr15:42411247-42411327 52 3.83e-05 ccctccctga gactctta ttctgaaata chr4:169753115-169753195 36 3.83e-05 CGCGCCGCCG GACTCTTA TTTTGAAGGG chr7:2759869-2759949 19 5.55e-05 CACTGCTGGA GGCTTTTA AAACACCTGT chr10:91536581-91536661 46 5.55e-05 tttttttgag ggctttta tcatgaaggg chr1:71343249-71343329 35 5.55e-05 tgtcatagat ggctttta ttttgaaata chr3:43020698-43020778 27 5.55e-05 CCCCCGGCAG GGCTTTTA TTGTGAAGGG chr7:1766918-1766998 57 5.55e-05 TATCTCCTGA GGCTTTTA TTCTGGTGGG chr5:128432488-128432568 19 7.02e-05 AGGGAGGCTG GGCTCTTA TCTAAGATAA chr5:53682007-53682087 39 7.02e-05 GCAGAGTTCT GGCTCTTA AGCTGGCTGT chr7:134832250-134832330 33 7.02e-05 AGCTTTGTTC GGCTCTTA TTTTGAAATA chr5:38505659-38505739 34 7.02e-05 gggttcacaa ggctctta ttattgtaac chr3:150137897-150137977 8 7.02e-05 TTCCTTG GGCTCTTA ATCTCCTCAA chr17:80551155-80551235 31 7.02e-05 ACCGGGCACA GGCTCTTA TTCTGAAAGG chr17:80550888-80550968 46 7.02e-05 ACCGGGCACA GGCTCTTA TTCTGAAAGA chr6:41283856-41283936 28 8.78e-05 aggtatcaag gacttcta ttttggagta chr7:156635594-156635674 55 8.78e-05 tgtgcttgca gacttcta cctttcacca chr1:33373231-33373311 63 8.78e-05 ggtcaccagt gacttcta atttggctaa chr1:17542689-17542769 20 8.78e-05 gatgcaacgg gacttcta ttttaaaagg chr7:112724639-112724719 39 1.03e-04 CCACCACGCT GACTCCTA TTATGAAACC chr20:45991207-45991287 48 1.03e-04 atccatcaat gactccta tttctcagta chr5:109028770-109028850 50 1.28e-04 TGACTAAAGG AACTTTTA TTTTGAAGCC chr7:24517603-24517683 63 1.28e-04 GAGTCTCCAG AACTTTTA ACTTGATATA chr19:14193524-14193604 61 1.28e-04 TTAAGATGAG AACTTTTA TTTTGGTGGG chr4:183184871-183184951 71 1.66e-04 cacgtgtcga aactctta ag chr19:10205177-10205257 28 1.66e-04 AACCAGTTCA AACTCTTA CCAAAGTAGC chr8:125538966-125539046 34 1.66e-04 AGAAAACCAC AACTCTTA AGTTGAAGCC chr3:122221126-122221206 51 1.66e-04 ttgttatagt gcctttta ggaggcagag chr15:57551784-57551864 34 1.66e-04 AATGGCATGG GCCTTTTA TTCTGAAATG chr1:204119858-204119938 19 1.66e-04 ACCAAACTGG GCCTTTTA TTTTGAAAAC chr4:103753501-103753581 47 1.66e-04 gatcttgagg gcctttta ttttgaaggg chr11:12528070-12528150 14 1.96e-04 GGAGAGAGGG GGCTTCTA TTTTGAAACA chr5:138517286-138517366 40 1.96e-04 ACTATCTCCA GGCTTCTA TTTTGAAGTT chr11:118798417-11879849 23 1.96e-04 agcccagaga ggctTCTA ATGTGAAAGA chr2:197471998-197472078 26 1.96e-04 ATTAAAAGCA GCCTCTTA TCTCAATGAA chr19:51059284-51059364 64 1.96e-04 AGAATTGTCA GGCTTCTA TGTCTGGAG chr1:100817833-100817913 28 2.09e-04 CTTAGCAACC GGCTCCTA GTGACCCGCG chr1:198607211-198607291 70 2.33e-04 cacatgtgtg tactttta ttt chr19:21326406-21326486 23 2.71e-04 TCTTCTAGTT TACTCTTA TTTTGAAAAG chr17:79680414-79680494 47 2.71e-04 CTGTCCAGGG GACTTGTA TTCCAGCAGC chr11:46849709-46849789 30 2.71e-04 AGACTCAGGT TACTCTTA TTCTGAAGGT chr1:93257323-93257403 51 3.07e-04 AAATTTATGT AGCTTTTA TTATGAACTG chr1:197171134-197171214 32 3.07e-04 tttatctgcg gactcgta ttatgaagcg chr5:43193551-43193631 65 3.24e-04 TCACATTCTA AGCTCTTA CCCGTGCA chr6:107431523-107431603 31 3.24e-04 TGGCATGGAG AGCTCTTA GTTTGACATG chr4:169733090-169733170 66 3.42e-04 GCTGCTTTGG GACTTTTG TTTGACA chr4:81355451-81355531 19 3.56e-04 ttaatgaaag gactcttg ttttgtagca chr1:95587953-95588033 36 3.77e-04 AGTGACTGCT TGCTTTTA TCATTGATAT chr1:201644529-201644609 72 3.77e-04 TAAAAGTCCC TGCTTTTA G chr8:100020596-100020676 46 4.09e-04 cccagcttgt ggcttgta ttttgacatg chr14:91815574-91815654 19 4.42e-04 ccgggaaagg aacttcta atttgcagca -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACTYTTA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:89229368-89229448 2.1e-05 31_[+2]_41 chr4:87940527-87940607 2.1e-05 31_[+2]_41 chr7:26505786-26505866 2.1e-05 42_[+2]_30 chr3:34304704-34304784 2.1e-05 22_[+2]_50 chr1:61567331-61567411 2.1e-05 48_[+2]_24 chr8:99283905-99283985 2.1e-05 37_[+2]_35 chr1:223418290-223418370 2.1e-05 28_[+2]_44 chr6:27764083-27764163 2.1e-05 40_[+2]_32 chr12:7275666-7275746 2.1e-05 36_[+2]_36 chr1:1121024-1121104 2.1e-05 26_[+2]_46 chr15:87883758-87883838 2.1e-05 41_[+2]_31 chr19:4768964-4769044 2.1e-05 20_[+2]_52 chr20:51041840-51041920 2.1e-05 17_[+2]_55 chr1:241933603-241933683 2.1e-05 72_[+2] chr17:53288430-53288510 2.1e-05 6_[+2]_66 chr3:14224669-14224749 2.1e-05 45_[+2]_27 chr2:113442898-113442978 2.1e-05 58_[+2]_14 chr4:48339947-48340027 2.1e-05 39_[+2]_33 chr5:149598918-149598998 2.1e-05 44_[+2]_28 chr14:70322054-70322134 2.1e-05 36_[+2]_36 chr6:125397647-125397727 2.1e-05 46_[+2]_26 chr12:32086642-32086722 2.1e-05 42_[+2]_30 chr10:115479352-11547943 2.1e-05 67_[+2]_5 chr12:109592112-10959219 2.1e-05 35_[+2]_37 chr19:17865990-17866070 2.1e-05 57_[+2]_15 chr5:175869030-175869110 2.1e-05 42_[+2]_30 chr1:94313701-94313781 3.8e-05 27_[+2]_45 chr12:68673324-68673404 3.8e-05 44_[+2]_28 chr19:45651577-45651657 3.8e-05 25_[+2]_47 chr7:38368574-38368654 3.8e-05 20_[+2]_52 chr8:99539032-99539112 3.8e-05 35_[+2]_37 chr22:31113631-31113711 3.8e-05 40_[+2]_32 chr10:72701135-72701215 3.8e-05 46_[+2]_26 chr17:33917622-33917702 3.8e-05 38_[+2]_34 chr18:10015344-10015424 3.8e-05 52_[+2]_20 chr16:12861987-12862067 3.8e-05 23_[+2]_49 chr6:157138713-157138793 3.8e-05 46_[+2]_26 chr1:53391266-53391346 3.8e-05 20_[+2]_52 chr8:30659343-30659423 3.8e-05 37_[+2]_35 chr1:113218773-113218853 3.8e-05 35_[+2]_37 chr5:78993206-78993286 3.8e-05 25_[+2]_47 chr19:4554874-4554954 3.8e-05 29_[+2]_43 chr5:64808096-64808176 3.8e-05 38_[+2]_34 chr3:17472217-17472297 3.8e-05 30_[+2]_42 chr5:137203430-137203510 3.8e-05 16_[+2]_56 chr15:42411247-42411327 3.8e-05 51_[+2]_21 chr4:169753115-169753195 3.8e-05 35_[+2]_37 chr7:2759869-2759949 5.5e-05 18_[+2]_54 chr10:91536581-91536661 5.5e-05 45_[+2]_27 chr1:71343249-71343329 5.5e-05 34_[+2]_38 chr3:43020698-43020778 5.5e-05 26_[+2]_46 chr7:1766918-1766998 5.5e-05 56_[+2]_16 chr5:128432488-128432568 7e-05 18_[+2]_54 chr5:53682007-53682087 7e-05 38_[+2]_34 chr7:134832250-134832330 7e-05 32_[+2]_40 chr5:38505659-38505739 7e-05 33_[+2]_39 chr3:150137897-150137977 7e-05 7_[+2]_65 chr17:80551155-80551235 7e-05 30_[+2]_42 chr17:80550888-80550968 7e-05 45_[+2]_27 chr6:41283856-41283936 8.8e-05 27_[+2]_45 chr7:156635594-156635674 8.8e-05 54_[+2]_18 chr1:33373231-33373311 8.8e-05 62_[+2]_10 chr1:17542689-17542769 8.8e-05 19_[+2]_53 chr7:112724639-112724719 0.0001 38_[+2]_34 chr20:45991207-45991287 0.0001 47_[+2]_25 chr5:109028770-109028850 0.00013 49_[+2]_23 chr7:24517603-24517683 0.00013 62_[+2]_10 chr19:14193524-14193604 0.00013 60_[+2]_12 chr4:183184871-183184951 0.00017 70_[+2]_2 chr19:10205177-10205257 0.00017 27_[+2]_45 chr8:125538966-125539046 0.00017 33_[+2]_39 chr3:122221126-122221206 0.00017 50_[+2]_22 chr15:57551784-57551864 0.00017 33_[+2]_39 chr1:204119858-204119938 0.00017 18_[+2]_54 chr4:103753501-103753581 0.00017 46_[+2]_26 chr11:12528070-12528150 0.0002 13_[+2]_59 chr5:138517286-138517366 0.0002 39_[+2]_33 chr11:118798417-11879849 0.0002 22_[+2]_50 chr2:197471998-197472078 0.0002 25_[+2]_47 chr19:51059284-51059364 0.0002 63_[+2]_9 chr1:100817833-100817913 0.00021 27_[+2]_45 chr1:198607211-198607291 0.00023 69_[+2]_3 chr19:21326406-21326486 0.00027 22_[+2]_50 chr17:79680414-79680494 0.00027 46_[+2]_26 chr11:46849709-46849789 0.00027 29_[+2]_43 chr1:93257323-93257403 0.00031 50_[+2]_22 chr1:197171134-197171214 0.00031 31_[+2]_41 chr5:43193551-43193631 0.00032 64_[+2]_8 chr6:107431523-107431603 0.00032 30_[+2]_42 chr4:169733090-169733170 0.00034 65_[+2]_7 chr4:81355451-81355531 0.00036 18_[+2]_54 chr1:95587953-95588033 0.00038 35_[+2]_37 chr1:201644529-201644609 0.00038 71_[+2]_1 chr8:100020596-100020676 0.00041 45_[+2]_27 chr14:91815574-91815654 0.00044 18_[+2]_54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACTYTTA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GACTYTTA width=8 seqs=95 chr6:89229368-89229448 ( 32) GACTTTTA 1 chr4:87940527-87940607 ( 32) GACTTTTA 1 chr7:26505786-26505866 ( 43) GACTTTTA 1 chr3:34304704-34304784 ( 23) GACTTTTA 1 chr1:61567331-61567411 ( 49) GACTTTTA 1 chr8:99283905-99283985 ( 38) GACTTTTA 1 chr1:223418290-223418370 ( 29) GACTTTTA 1 chr6:27764083-27764163 ( 41) GACTTTTA 1 chr12:7275666-7275746 ( 37) GACTTTTA 1 chr1:1121024-1121104 ( 27) GACTTTTA 1 chr15:87883758-87883838 ( 42) GACTTTTA 1 chr19:4768964-4769044 ( 21) GACTTTTA 1 chr20:51041840-51041920 ( 18) GACTTTTA 1 chr1:241933603-241933683 ( 73) GACTTTTA 1 chr17:53288430-53288510 ( 7) GACTTTTA 1 chr3:14224669-14224749 ( 46) GACTTTTA 1 chr2:113442898-113442978 ( 59) GACTTTTA 1 chr4:48339947-48340027 ( 40) GACTTTTA 1 chr5:149598918-149598998 ( 45) GACTTTTA 1 chr14:70322054-70322134 ( 37) GACTTTTA 1 chr6:125397647-125397727 ( 47) GACTTTTA 1 chr12:32086642-32086722 ( 43) GACTTTTA 1 chr10:115479352-11547943 ( 68) GACTTTTA 1 chr12:109592112-10959219 ( 36) GACTTTTA 1 chr19:17865990-17866070 ( 58) GACTTTTA 1 chr5:175869030-175869110 ( 43) GACTTTTA 1 chr1:94313701-94313781 ( 28) GACTCTTA 1 chr12:68673324-68673404 ( 45) GACTCTTA 1 chr19:45651577-45651657 ( 26) GACTCTTA 1 chr7:38368574-38368654 ( 21) GACTCTTA 1 chr8:99539032-99539112 ( 36) GACTCTTA 1 chr22:31113631-31113711 ( 41) GACTCTTA 1 chr10:72701135-72701215 ( 47) GACTCTTA 1 chr17:33917622-33917702 ( 39) GACTCTTA 1 chr18:10015344-10015424 ( 53) GACTCTTA 1 chr16:12861987-12862067 ( 24) GACTCTTA 1 chr6:157138713-157138793 ( 47) GACTCTTA 1 chr1:53391266-53391346 ( 21) GACTCTTA 1 chr8:30659343-30659423 ( 38) GACTCTTA 1 chr1:113218773-113218853 ( 36) GACTCTTA 1 chr5:78993206-78993286 ( 26) GACTCTTA 1 chr19:4554874-4554954 ( 30) GACTCTTA 1 chr5:64808096-64808176 ( 39) GACTCTTA 1 chr3:17472217-17472297 ( 31) GACTCTTA 1 chr5:137203430-137203510 ( 17) GACTCTTA 1 chr15:42411247-42411327 ( 52) GACTCTTA 1 chr4:169753115-169753195 ( 36) GACTCTTA 1 chr7:2759869-2759949 ( 19) GGCTTTTA 1 chr10:91536581-91536661 ( 46) GGCTTTTA 1 chr1:71343249-71343329 ( 35) GGCTTTTA 1 chr3:43020698-43020778 ( 27) GGCTTTTA 1 chr7:1766918-1766998 ( 57) GGCTTTTA 1 chr5:128432488-128432568 ( 19) GGCTCTTA 1 chr5:53682007-53682087 ( 39) GGCTCTTA 1 chr7:134832250-134832330 ( 33) GGCTCTTA 1 chr5:38505659-38505739 ( 34) GGCTCTTA 1 chr3:150137897-150137977 ( 8) GGCTCTTA 1 chr17:80551155-80551235 ( 31) GGCTCTTA 1 chr17:80550888-80550968 ( 46) GGCTCTTA 1 chr6:41283856-41283936 ( 28) GACTTCTA 1 chr7:156635594-156635674 ( 55) GACTTCTA 1 chr1:33373231-33373311 ( 63) GACTTCTA 1 chr1:17542689-17542769 ( 20) GACTTCTA 1 chr7:112724639-112724719 ( 39) GACTCCTA 1 chr20:45991207-45991287 ( 48) GACTCCTA 1 chr5:109028770-109028850 ( 50) AACTTTTA 1 chr7:24517603-24517683 ( 63) AACTTTTA 1 chr19:14193524-14193604 ( 61) AACTTTTA 1 chr4:183184871-183184951 ( 71) AACTCTTA 1 chr19:10205177-10205257 ( 28) AACTCTTA 1 chr8:125538966-125539046 ( 34) AACTCTTA 1 chr3:122221126-122221206 ( 51) GCCTTTTA 1 chr15:57551784-57551864 ( 34) GCCTTTTA 1 chr1:204119858-204119938 ( 19) GCCTTTTA 1 chr4:103753501-103753581 ( 47) GCCTTTTA 1 chr11:12528070-12528150 ( 14) GGCTTCTA 1 chr5:138517286-138517366 ( 40) GGCTTCTA 1 chr11:118798417-11879849 ( 23) GGCTTCTA 1 chr2:197471998-197472078 ( 26) GCCTCTTA 1 chr19:51059284-51059364 ( 64) GGCTTCTA 1 chr1:100817833-100817913 ( 28) GGCTCCTA 1 chr1:198607211-198607291 ( 70) TACTTTTA 1 chr19:21326406-21326486 ( 23) TACTCTTA 1 chr17:79680414-79680494 ( 47) GACTTGTA 1 chr11:46849709-46849789 ( 30) TACTCTTA 1 chr1:93257323-93257403 ( 51) AGCTTTTA 1 chr1:197171134-197171214 ( 32) GACTCGTA 1 chr5:43193551-43193631 ( 65) AGCTCTTA 1 chr6:107431523-107431603 ( 31) AGCTCTTA 1 chr4:169733090-169733170 ( 66) GACTTTTG 1 chr4:81355451-81355531 ( 19) GACTCTTG 1 chr1:95587953-95588033 ( 36) TGCTTTTA 1 chr1:201644529-201644609 ( 72) TGCTTTTA 1 chr8:100020596-100020676 ( 46) GGCTTGTA 1 chr14:91815574-91815654 ( 19) AACTTCTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACTYTTA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.16214 E= 5.4e-075 -137 -1321 189 -236 138 -213 10 -1321 -1321 211 -1321 -1321 -1321 -1321 -1321 189 -1321 90 -1321 107 -1321 -87 -284 164 -1321 -1321 -1321 189 185 -1321 -343 -1321 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACTYTTA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 95 E= 5.4e-075 0.105263 0.000000 0.842105 0.052632 0.705263 0.052632 0.242105 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.431579 0.000000 0.568421 0.000000 0.126316 0.031579 0.842105 0.000000 0.000000 0.000000 1.000000 0.978947 0.000000 0.021053 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACTYTTA MEME-2 regular expression -------------------------------------------------------------------------------- G[AG]CT[TC]TTA -------------------------------------------------------------------------------- Time 8.57 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTTGAAR MEME-3 width = 8 sites = 56 llr = 451 E-value = 7.5e-017 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTGAAR MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1:1::996 pos.-specific C ::2:::1: probability G :11:a1:4 matrix T 996a:::: bits 2.1 * 1.9 ** 1.7 ** 1.5 ** **** Relative 1.3 ** **** Entropy 1.1 ** ***** (11.6 bits) 0.9 ** ***** 0.6 ** ***** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTTGAAA consensus C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTGAAR MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:12528070-12528150 22 2.43e-05 GGGGCTTCTA TTTTGAAA CAGTGGTCAT chr7:134832250-134832330 41 2.43e-05 TCGGCTCTTA TTTTGAAA TAAAATAGAT chr19:21326406-21326486 31 2.43e-05 TTTACTCTTA TTTTGAAA AGGTAACCTC chr7:38368574-38368654 29 2.43e-05 tggactctta ttttgaaa ttacatcatc chr15:87883758-87883838 50 2.43e-05 GGGACTTTTA TTTTGAAA ACAAGGACAA chr1:71343249-71343329 43 2.43e-05 atggctttta ttttgaaa tatgttcctc chr1:53391266-53391346 29 2.43e-05 TGGACTCTTA TTTTGAAA GCAATATCCA chr14:70322054-70322134 45 2.43e-05 TAGACTTTTA TTTTGAAA TAACCCCCAC chr3:196949821-196949901 69 2.43e-05 GTGCCTACTA TTTTGAAA TAGC chr3:154753550-154753630 69 2.43e-05 gtgtctctta ttttgaaa caga chr12:32086642-32086722 51 2.43e-05 AAGACTTTTA TTTTGAAA TTCGGGGACt chr7:95239035-95239115 41 2.43e-05 CATGCTATTA TTTTGAAA AGTGCTGTGC chr5:64808096-64808176 47 2.43e-05 gtgactctta ttttgaaa gttctactgt chr1:204119858-204119938 27 2.43e-05 GGGCCTTTTA TTTTGAAA ACGCTACTCC chr5:109028770-109028850 58 4.45e-05 GGAACTTTTA TTTTGAAG CCATAATGAA chr5:138517286-138517366 48 4.45e-05 CAGGCTTCTA TTTTGAAG TTGAGAAATC chr9:97344176-97344256 59 4.45e-05 ctcactccta ttttgaag aggaaaccat chr7:149325115-149325195 39 4.45e-05 TGAGCTTCTA TTTTGAAG TGGCAACTCA chr2:203967184-203967264 4 4.45e-05 tta ttttgaag tatgttcctt chr4:103753501-103753581 55 4.45e-05 gggcctttta ttttgaag gggatgggat chr4:169753115-169753195 44 4.45e-05 CGGACTCTTA TTTTGAAG GGCGGCGGGT chr6:27764083-27764163 49 6.53e-05 ttgactttta ttctgaaa tgggaagtca chr12:7275666-7275746 45 6.53e-05 AGGACTTTTA TTCTGAAA GAGCCAAGGC chr17:80551155-80551235 39 6.53e-05 CAGGCTCTTA TTCTGAAA GGGTACGCAG chr15:57551784-57551864 42 6.53e-05 GGGCCTTTTA TTCTGAAA TGGAGCTCTT chr17:80550888-80550968 54 6.53e-05 CAGGCTCTTA TTCTGAAA GACCCAGTGA chr15:42411247-42411327 60 6.53e-05 gagactctta ttctgaaa tagctggtGT chr16:4026523-4026603 16 8.26e-05 AGTGATACGG TTCTGAAG GCCAGCGTCC chr19:4768964-4769044 29 8.26e-05 CAGACTTTTA TTCTGAAG CGTGGGCCAC chr11:46849709-46849789 38 8.26e-05 GTTACTCTTA TTCTGAAG GTTTTAGAGA chr16:46773879-46773959 36 8.26e-05 GGGGCCTTTA TTCTGAAG CTGTTGTGTC chr7:112724639-112724719 47 1.07e-04 CTGACTCCTA TTATGAAA CCCAAGGAAG chr1:4546095-4546175 11 1.07e-04 acggttcttt ttatgaaa tgtgatttca chr1:100814962-100815042 36 1.07e-04 TATGCCTTTA TTATGAAA CTACAACCAA chr6:107367663-107367743 69 1.52e-04 CTAACTAGAG ATTTGAAA TGTA chr3:17472217-17472297 39 1.52e-04 CAGACTCTTA TTTTGGAA GGAAACTGTC chr5:175869030-175869110 51 1.52e-04 cagactttta ttttggaa gggtctcagc chr1:197171134-197171214 40 1.72e-04 cggactcgta ttatgaag cgcaaggTCC chr7:67080014-67080094 1 1.72e-04 . TTATGAAG TAATTTCATA chr1:150848129-150848209 27 2.30e-04 GGGACTAGTA ATTTGAAG ATCTGATCTC chr9:4986916-4986996 58 2.30e-04 CACCCAGAAC ATTTGAAG ATGAATAATC chr6:41283856-41283936 36 2.30e-04 aggacttcta ttttggag tactattgag chr8:99938263-99938343 26 2.30e-04 AAGTGAATAA TTTTGGAG ACAGTGACTA chr2:157196009-157196089 62 2.30e-04 TGGACTTCAA TTGTGAAA TGAAGCACAG chr1:33607536-33607616 38 2.30e-04 TCCTACTTTT TTTTGGAG GCTGTGCCTC chr8:30659343-30659423 46 2.30e-04 CAGACTCTTA ATTTGAAG CAACTCTAAA chr14:100905808-10090588 58 2.30e-04 TTTGCCTGTC TTGTGAAA GTTAACTTGC chr3:43020698-43020778 35 2.47e-04 AGGGCTTTTA TTGTGAAG GGAGCTTCCC chr8:100020596-100020676 72 2.88e-04 tgtgcttgta ttttgaca t chr2:183460512-183460592 27 2.88e-04 AGGACTACTA TTTTGACA TCCGGAATAA chr22:31113631-31113711 49 2.88e-04 GAGACTCTTA TTTTGACA CTTAGAGTCT chr10:91536581-91536661 65 2.88e-04 catgaaggga tgttgaaa tgcccttt chr2:162065125-162065205 11 3.22e-04 gggtctctta tgttgaag tcaggatgtg chr1:17542689-17542769 53 3.22e-04 ctggctgcta tgttgaag ctggactgtg chr6:2739719-2739799 60 3.61e-04 ACCTGTGTGC ATCTGAAA CCCCAAGTGG chr6:33619341-33619421 17 3.92e-04 TGATCCTTCC ATCTGAAG AAGCTGTCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTGAAR MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:12528070-12528150 2.4e-05 21_[+3]_51 chr7:134832250-134832330 2.4e-05 40_[+3]_32 chr19:21326406-21326486 2.4e-05 30_[+3]_42 chr7:38368574-38368654 2.4e-05 28_[+3]_44 chr15:87883758-87883838 2.4e-05 49_[+3]_23 chr1:71343249-71343329 2.4e-05 42_[+3]_30 chr1:53391266-53391346 2.4e-05 28_[+3]_44 chr14:70322054-70322134 2.4e-05 44_[+3]_28 chr3:196949821-196949901 2.4e-05 68_[+3]_4 chr3:154753550-154753630 2.4e-05 68_[+3]_4 chr12:32086642-32086722 2.4e-05 50_[+3]_22 chr7:95239035-95239115 2.4e-05 40_[+3]_32 chr5:64808096-64808176 2.4e-05 46_[+3]_26 chr1:204119858-204119938 2.4e-05 26_[+3]_46 chr5:109028770-109028850 4.5e-05 57_[+3]_15 chr5:138517286-138517366 4.5e-05 47_[+3]_25 chr9:97344176-97344256 4.5e-05 58_[+3]_14 chr7:149325115-149325195 4.5e-05 38_[+3]_34 chr2:203967184-203967264 4.5e-05 3_[+3]_69 chr4:103753501-103753581 4.5e-05 54_[+3]_18 chr4:169753115-169753195 4.5e-05 43_[+3]_29 chr6:27764083-27764163 6.5e-05 48_[+3]_24 chr12:7275666-7275746 6.5e-05 44_[+3]_28 chr17:80551155-80551235 6.5e-05 38_[+3]_34 chr15:57551784-57551864 6.5e-05 41_[+3]_31 chr17:80550888-80550968 6.5e-05 53_[+3]_19 chr15:42411247-42411327 6.5e-05 59_[+3]_13 chr16:4026523-4026603 8.3e-05 15_[+3]_57 chr19:4768964-4769044 8.3e-05 28_[+3]_44 chr11:46849709-46849789 8.3e-05 37_[+3]_35 chr16:46773879-46773959 8.3e-05 35_[+3]_37 chr7:112724639-112724719 0.00011 46_[+3]_26 chr1:4546095-4546175 0.00011 10_[+3]_62 chr1:100814962-100815042 0.00011 35_[+3]_37 chr6:107367663-107367743 0.00015 68_[+3]_4 chr3:17472217-17472297 0.00015 38_[+3]_34 chr5:175869030-175869110 0.00015 50_[+3]_22 chr1:197171134-197171214 0.00017 39_[+3]_33 chr7:67080014-67080094 0.00017 [+3]_72 chr1:150848129-150848209 0.00023 26_[+3]_46 chr9:4986916-4986996 0.00023 57_[+3]_15 chr6:41283856-41283936 0.00023 35_[+3]_37 chr8:99938263-99938343 0.00023 25_[+3]_47 chr2:157196009-157196089 0.00023 61_[+3]_11 chr1:33607536-33607616 0.00023 37_[+3]_35 chr8:30659343-30659423 0.00023 45_[+3]_27 chr14:100905808-10090588 0.00023 57_[+3]_15 chr3:43020698-43020778 0.00025 34_[+3]_38 chr8:100020596-100020676 0.00029 71_[+3]_1 chr2:183460512-183460592 0.00029 26_[+3]_46 chr22:31113631-31113711 0.00029 48_[+3]_24 chr10:91536581-91536661 0.00029 64_[+3]_8 chr2:162065125-162065205 0.00032 10_[+3]_62 chr1:17542689-17542769 0.00032 52_[+3]_20 chr6:2739719-2739799 0.00036 59_[+3]_13 chr6:33619341-33619421 0.00039 16_[+3]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTGAAR MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTGAAR width=8 seqs=56 chr11:12528070-12528150 ( 22) TTTTGAAA 1 chr7:134832250-134832330 ( 41) TTTTGAAA 1 chr19:21326406-21326486 ( 31) TTTTGAAA 1 chr7:38368574-38368654 ( 29) TTTTGAAA 1 chr15:87883758-87883838 ( 50) TTTTGAAA 1 chr1:71343249-71343329 ( 43) TTTTGAAA 1 chr1:53391266-53391346 ( 29) TTTTGAAA 1 chr14:70322054-70322134 ( 45) TTTTGAAA 1 chr3:196949821-196949901 ( 69) TTTTGAAA 1 chr3:154753550-154753630 ( 69) TTTTGAAA 1 chr12:32086642-32086722 ( 51) TTTTGAAA 1 chr7:95239035-95239115 ( 41) TTTTGAAA 1 chr5:64808096-64808176 ( 47) TTTTGAAA 1 chr1:204119858-204119938 ( 27) TTTTGAAA 1 chr5:109028770-109028850 ( 58) TTTTGAAG 1 chr5:138517286-138517366 ( 48) TTTTGAAG 1 chr9:97344176-97344256 ( 59) TTTTGAAG 1 chr7:149325115-149325195 ( 39) TTTTGAAG 1 chr2:203967184-203967264 ( 4) TTTTGAAG 1 chr4:103753501-103753581 ( 55) TTTTGAAG 1 chr4:169753115-169753195 ( 44) TTTTGAAG 1 chr6:27764083-27764163 ( 49) TTCTGAAA 1 chr12:7275666-7275746 ( 45) TTCTGAAA 1 chr17:80551155-80551235 ( 39) TTCTGAAA 1 chr15:57551784-57551864 ( 42) TTCTGAAA 1 chr17:80550888-80550968 ( 54) TTCTGAAA 1 chr15:42411247-42411327 ( 60) TTCTGAAA 1 chr16:4026523-4026603 ( 16) TTCTGAAG 1 chr19:4768964-4769044 ( 29) TTCTGAAG 1 chr11:46849709-46849789 ( 38) TTCTGAAG 1 chr16:46773879-46773959 ( 36) TTCTGAAG 1 chr7:112724639-112724719 ( 47) TTATGAAA 1 chr1:4546095-4546175 ( 11) TTATGAAA 1 chr1:100814962-100815042 ( 36) TTATGAAA 1 chr6:107367663-107367743 ( 69) ATTTGAAA 1 chr3:17472217-17472297 ( 39) TTTTGGAA 1 chr5:175869030-175869110 ( 51) TTTTGGAA 1 chr1:197171134-197171214 ( 40) TTATGAAG 1 chr7:67080014-67080094 ( 1) TTATGAAG 1 chr1:150848129-150848209 ( 27) ATTTGAAG 1 chr9:4986916-4986996 ( 58) ATTTGAAG 1 chr6:41283856-41283936 ( 36) TTTTGGAG 1 chr8:99938263-99938343 ( 26) TTTTGGAG 1 chr2:157196009-157196089 ( 62) TTGTGAAA 1 chr1:33607536-33607616 ( 38) TTTTGGAG 1 chr8:30659343-30659423 ( 46) ATTTGAAG 1 chr14:100905808-10090588 ( 58) TTGTGAAA 1 chr3:43020698-43020778 ( 35) TTGTGAAG 1 chr8:100020596-100020676 ( 72) TTTTGACA 1 chr2:183460512-183460592 ( 27) TTTTGACA 1 chr22:31113631-31113711 ( 49) TTTTGACA 1 chr10:91536581-91536661 ( 65) TGTTGAAA 1 chr2:162065125-162065205 ( 11) TGTTGAAG 1 chr1:17542689-17542769 ( 53) TGTTGAAG 1 chr6:2739719-2739799 ( 60) ATCTGAAA 1 chr6:33619341-33619421 ( 17) ATCTGAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTGAAR MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.56875 E= 7.5e-017 -134 -1245 -1245 172 -1245 -1245 -208 181 -161 -11 -208 125 -1245 -1245 -1245 189 -1245 -1245 214 -1245 174 -1245 -134 -1245 180 -211 -1245 -1245 112 -1245 86 -1245 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTGAAR MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 56 E= 7.5e-017 0.107143 0.000000 0.000000 0.892857 0.000000 0.000000 0.053571 0.946429 0.089286 0.214286 0.053571 0.642857 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.910714 0.000000 0.089286 0.000000 0.946429 0.053571 0.000000 0.000000 0.589286 0.000000 0.410714 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTGAAR MEME-3 regular expression -------------------------------------------------------------------------------- TT[TC]TGAA[AG] -------------------------------------------------------------------------------- Time 12.03 secs. ******************************************************************************** ******************************************************************************** MOTIF SCCTCCYC MEME-4 width = 8 sites = 32 llr = 277 E-value = 2.5e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif SCCTCCYC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::::1: pos.-specific C 4aa:983a probability G 4::::::: matrix T 2::a126: bits 2.1 ** * 1.9 *** * 1.7 *** * 1.5 **** * Relative 1.3 ***** * Entropy 1.1 ***** * (12.5 bits) 0.9 ***** * 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCCTCCTC consensus C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCTCCYC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:61248545-61248625 61 1.09e-05 CTCCTGCTTG GCCTCCTC CAGGAGGGCT chrX:48900805-48900885 46 1.09e-05 CGCCACTGCC GCCTCCTC CGCTAAGCCA chr11:118796677-11879675 49 1.09e-05 CATCTCGCTT GCCTCCTC GCCCAACCCG chr17:79378723-79378803 4 1.09e-05 GGT GCCTCCTC TCTGCGGACT chr2:27170231-27170311 52 1.09e-05 CAAAGTAAAG GCCTCCTC CCCCACCCCT chr3:172235862-172235942 8 1.09e-05 CTCCCCC GCCTCCTC CCATCCTTTC chr4:169753115-169753195 6 1.09e-05 GCCAC GCCTCCTC TCTCCCGCCC chr19:36451504-36451584 16 2.20e-05 acaagtctgt ccctcctc cactcaaaat chr5:34032256-34032336 48 2.20e-05 aaaatattag ccctcctc caccttccag chr1:95587953-95588033 69 3.13e-05 CCTAGTTGCA GCCTCCCC TTGA chr19:10203970-10204050 15 3.13e-05 CAGGAGTCCC GCCTCCCC TATCCTCTCA chr19:17866892-17866972 66 4.07e-05 TGCCCTTGCT CCCTCCCC AGCTGGG chr19:19517289-19517369 49 4.07e-05 GGAGGGCCGG CCCTCCCC CAGCTCGCGC chr5:43193551-43193631 6 4.07e-05 ACCCC CCCTCCCC CACCCCATTC chr1:33607536-33607616 18 4.07e-05 AGTACTTCCC CCCTCCCC TCTCCTACTT chr12:7281496-7281576 63 4.07e-05 CAGACTTCTT CCCTCCCC GCATGGTGAG chr3:24347468-24347548 29 5.37e-05 CAAACATACT TCCTCCTC TTGCTAATTT chr16:4026523-4026603 31 5.37e-05 AAGGCCAGCG TCCTCCTC AGTATGCAGA chr16:24113588-24113668 60 5.37e-05 CAGATAAAAG TCCTCCTC AGATTTACGG chr7:156635594-156635674 7 7.75e-05 gctctc tcctcccc tttccagcca chr12:121974469-12197454 28 7.75e-05 GACCACACTG GCCTCTTC TCTCTAAGCA chr11:46128507-46128587 68 7.75e-05 CCCCACGGCT GCCTCTTC TGCAG chr12:7275666-7275746 6 9.04e-05 TTGAG CCCTCTTC ACTCTGATAG chr3:14250773-14250853 43 9.04e-05 aaGTCATGTC CCCTCTTC CTGCAAAAGA chr19:10204634-10204714 57 1.01e-04 AAAGAGTCCT GCCTCTCC CATTTCCTCA chr17:33917622-33917702 17 1.38e-04 AGAGTGATAT CCCTTCTC TTTAGAGCAG chr11:63672783-63672863 38 1.38e-04 TAAAAGCCCC CCCTTCTC TCCTGGGTTC chr1:204119858-204119938 67 1.49e-04 GGTTCTGTCA GCCTCCAC ACTTGG chr20:55669712-55669792 14 1.60e-04 CCCCTCATTT CCCTCCAC AGCAAGTTCG chr7:30815772-30815852 40 1.71e-04 caaaatagta gccttccc atttcataaa chr19:45731697-45731777 3 1.82e-04 ag cccttccc actcctaact chr1:201644529-201644609 39 1.97e-04 AACCTCAGCT TCCTCTTC ACCATGGTAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCTCCYC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:61248545-61248625 1.1e-05 60_[+4]_12 chrX:48900805-48900885 1.1e-05 45_[+4]_27 chr11:118796677-11879675 1.1e-05 48_[+4]_24 chr17:79378723-79378803 1.1e-05 3_[+4]_69 chr2:27170231-27170311 1.1e-05 51_[+4]_21 chr3:172235862-172235942 1.1e-05 7_[+4]_65 chr4:169753115-169753195 1.1e-05 5_[+4]_67 chr19:36451504-36451584 2.2e-05 15_[+4]_57 chr5:34032256-34032336 2.2e-05 47_[+4]_25 chr1:95587953-95588033 3.1e-05 68_[+4]_4 chr19:10203970-10204050 3.1e-05 14_[+4]_58 chr19:17866892-17866972 4.1e-05 65_[+4]_7 chr19:19517289-19517369 4.1e-05 48_[+4]_24 chr5:43193551-43193631 4.1e-05 5_[+4]_67 chr1:33607536-33607616 4.1e-05 17_[+4]_55 chr12:7281496-7281576 4.1e-05 62_[+4]_10 chr3:24347468-24347548 5.4e-05 28_[+4]_44 chr16:4026523-4026603 5.4e-05 30_[+4]_42 chr16:24113588-24113668 5.4e-05 59_[+4]_13 chr7:156635594-156635674 7.7e-05 6_[+4]_66 chr12:121974469-12197454 7.7e-05 27_[+4]_45 chr11:46128507-46128587 7.7e-05 67_[+4]_5 chr12:7275666-7275746 9e-05 5_[+4]_67 chr3:14250773-14250853 9e-05 42_[+4]_30 chr19:10204634-10204714 0.0001 56_[+4]_16 chr17:33917622-33917702 0.00014 16_[+4]_56 chr11:63672783-63672863 0.00014 37_[+4]_35 chr1:204119858-204119938 0.00015 66_[+4]_6 chr20:55669712-55669792 0.00016 13_[+4]_59 chr7:30815772-30815852 0.00017 39_[+4]_33 chr19:45731697-45731777 0.00018 2_[+4]_70 chr1:201644529-201644609 0.0002 38_[+4]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCTCCYC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SCCTCCYC width=8 seqs=32 chr11:61248545-61248625 ( 61) GCCTCCTC 1 chrX:48900805-48900885 ( 46) GCCTCCTC 1 chr11:118796677-11879675 ( 49) GCCTCCTC 1 chr17:79378723-79378803 ( 4) GCCTCCTC 1 chr2:27170231-27170311 ( 52) GCCTCCTC 1 chr3:172235862-172235942 ( 8) GCCTCCTC 1 chr4:169753115-169753195 ( 6) GCCTCCTC 1 chr19:36451504-36451584 ( 16) CCCTCCTC 1 chr5:34032256-34032336 ( 48) CCCTCCTC 1 chr1:95587953-95588033 ( 69) GCCTCCCC 1 chr19:10203970-10204050 ( 15) GCCTCCCC 1 chr19:17866892-17866972 ( 66) CCCTCCCC 1 chr19:19517289-19517369 ( 49) CCCTCCCC 1 chr5:43193551-43193631 ( 6) CCCTCCCC 1 chr1:33607536-33607616 ( 18) CCCTCCCC 1 chr12:7281496-7281576 ( 63) CCCTCCCC 1 chr3:24347468-24347548 ( 29) TCCTCCTC 1 chr16:4026523-4026603 ( 31) TCCTCCTC 1 chr16:24113588-24113668 ( 60) TCCTCCTC 1 chr7:156635594-156635674 ( 7) TCCTCCCC 1 chr12:121974469-12197454 ( 28) GCCTCTTC 1 chr11:46128507-46128587 ( 68) GCCTCTTC 1 chr12:7275666-7275746 ( 6) CCCTCTTC 1 chr3:14250773-14250853 ( 43) CCCTCTTC 1 chr19:10204634-10204714 ( 57) GCCTCTCC 1 chr17:33917622-33917702 ( 17) CCCTTCTC 1 chr11:63672783-63672863 ( 38) CCCTTCTC 1 chr1:204119858-204119938 ( 67) GCCTCCAC 1 chr20:55669712-55669792 ( 14) CCCTCCAC 1 chr7:30815772-30815852 ( 40) GCCTTCCC 1 chr19:45731697-45731777 ( 3) CCCTTCCC 1 chr1:201644529-201644609 ( 39) TCCTCTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCTCCYC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.4765 E= 2.5e-004 -1164 81 95 -79 -1164 211 -1164 -1164 -1164 211 -1164 -1164 -1164 -1164 -1164 189 -1164 192 -1164 -111 -1164 181 -1164 -53 -212 57 -1164 113 -1164 211 -1164 -1164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCTCCYC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 2.5e-004 0.000000 0.406250 0.437500 0.156250 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.875000 0.000000 0.125000 0.000000 0.812500 0.000000 0.187500 0.062500 0.343750 0.000000 0.593750 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCTCCYC MEME-4 regular expression -------------------------------------------------------------------------------- [GC]CCTCC[TC]C -------------------------------------------------------------------------------- Time 15.41 secs. ******************************************************************************** ******************************************************************************** MOTIF TTGCYAKG MEME-5 width = 8 sites = 22 llr = 200 E-value = 2.9e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTGCYAKG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::92: pos.-specific C :::a5::: probability G ::a:::5a matrix T aa::514: bits 2.1 ** * 1.9 **** * 1.7 **** * 1.5 **** * * Relative 1.3 **** * * Entropy 1.1 ****** * (13.1 bits) 0.9 ****** * 0.6 ****** * 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTGCCAGG consensus T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCYAKG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:55690768-55690848 65 1.24e-05 CAACGGGTTG TTGCCAGG ACAACGGG chr1:33373231-33373311 46 1.24e-05 aaaagagtcg ttgccagg gtcaccagtg chr11:61248545-61248625 16 2.68e-05 GGGGACGCTG TTGCTAGG CACCAGTTGC chr19:17866892-17866972 15 2.68e-05 AGGAAGCCTG TTGCTAGG CGACTGGTTG chr10:73600016-73600096 46 2.68e-05 AACAGGCAGG TTGCTAGG AAACCAAGAG chr19:54684060-54684140 29 2.68e-05 TGGCGTTCTG TTGCTAGG GAACCGTTTC chr22:24530270-24530350 23 2.68e-05 CCGCGACGTG TTGCTAGG CAGCAGTATC chrX:37853213-37853293 31 2.68e-05 GAAGTTCCAG TTGCTAGG GTGACCAGGT chr10:76349160-76349240 31 4.16e-05 CTCGCAGCAG TTGCCATG GAAACTTGGC chr11:125387189-12538726 26 4.16e-05 GGCTGCCAGG TTGCCATG CCAATAAGGT chr11:66104273-66104353 59 4.16e-05 GGATTTTAGG TTGCCATG GAGAAAATAT chrX:71314891-71314971 62 4.16e-05 ATGGCCCCTG TTGCCATG GTTCCCAAGC chr8:125622622-125622702 43 4.16e-05 AACAGATCTG TTGCCATG ACAACAATCA chr5:149598918-149598998 55 4.16e-05 gacttttatt TTGCCATG GGGCAGATCT chr4:169733090-169733170 46 5.88e-05 AGAAAGGTGG TTGCTATG GAGCTGCTTT chr4:81355451-81355531 44 5.88e-05 gcaggacctg ttgctatg gagtaaggac chr11:46849709-46849789 70 7.36e-05 TAAGCTAAAG TTGCCAAG TAT chr5:53682007-53682087 15 9.09e-05 ACTTTAGCTG TTGCTAAG GCAACTGCAG chr6:41283856-41283936 12 9.09e-05 ccttgttaag ttgctaag gtatcaagga chr8:26986340-26986420 31 9.09e-05 ATAGTGACAG TTGCTAAG CAAAGGGGTT chr8:26482894-26482974 43 1.03e-04 ATGGTAACTG TTGCCTGG CAACGGGAGA chr17:7117360-7117440 17 1.03e-04 CGTTTCTCTG TTGCCTGG CAACGCAGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCYAKG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:55690768-55690848 1.2e-05 64_[+5]_8 chr1:33373231-33373311 1.2e-05 45_[+5]_27 chr11:61248545-61248625 2.7e-05 15_[+5]_57 chr19:17866892-17866972 2.7e-05 14_[+5]_58 chr10:73600016-73600096 2.7e-05 45_[+5]_27 chr19:54684060-54684140 2.7e-05 28_[+5]_44 chr22:24530270-24530350 2.7e-05 22_[+5]_50 chrX:37853213-37853293 2.7e-05 30_[+5]_42 chr10:76349160-76349240 4.2e-05 30_[+5]_42 chr11:125387189-12538726 4.2e-05 25_[+5]_47 chr11:66104273-66104353 4.2e-05 58_[+5]_14 chrX:71314891-71314971 4.2e-05 61_[+5]_11 chr8:125622622-125622702 4.2e-05 42_[+5]_30 chr5:149598918-149598998 4.2e-05 54_[+5]_18 chr4:169733090-169733170 5.9e-05 45_[+5]_27 chr4:81355451-81355531 5.9e-05 43_[+5]_29 chr11:46849709-46849789 7.4e-05 69_[+5]_3 chr5:53682007-53682087 9.1e-05 14_[+5]_58 chr6:41283856-41283936 9.1e-05 11_[+5]_61 chr8:26986340-26986420 9.1e-05 30_[+5]_42 chr8:26482894-26482974 0.0001 42_[+5]_30 chr17:7117360-7117440 0.0001 16_[+5]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCYAKG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTGCYAKG width=8 seqs=22 chr19:55690768-55690848 ( 65) TTGCCAGG 1 chr1:33373231-33373311 ( 46) TTGCCAGG 1 chr11:61248545-61248625 ( 16) TTGCTAGG 1 chr19:17866892-17866972 ( 15) TTGCTAGG 1 chr10:73600016-73600096 ( 46) TTGCTAGG 1 chr19:54684060-54684140 ( 29) TTGCTAGG 1 chr22:24530270-24530350 ( 23) TTGCTAGG 1 chrX:37853213-37853293 ( 31) TTGCTAGG 1 chr10:76349160-76349240 ( 31) TTGCCATG 1 chr11:125387189-12538726 ( 26) TTGCCATG 1 chr11:66104273-66104353 ( 59) TTGCCATG 1 chrX:71314891-71314971 ( 62) TTGCCATG 1 chr8:125622622-125622702 ( 43) TTGCCATG 1 chr5:149598918-149598998 ( 55) TTGCCATG 1 chr4:169733090-169733170 ( 46) TTGCTATG 1 chr4:81355451-81355531 ( 44) TTGCTATG 1 chr11:46849709-46849789 ( 70) TTGCCAAG 1 chr5:53682007-53682087 ( 15) TTGCTAAG 1 chr6:41283856-41283936 ( 12) TTGCTAAG 1 chr8:26986340-26986420 ( 31) TTGCTAAG 1 chr8:26482894-26482974 ( 43) TTGCCTGG 1 chr17:7117360-7117440 ( 17) TTGCCTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCYAKG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.7218 E= 2.9e+000 -1110 -1110 -1110 189 -1110 -1110 -1110 189 -1110 -1110 214 -1110 -1110 211 -1110 -1110 -1110 111 -1110 89 174 -1110 -1110 -157 -58 -1110 100 43 -1110 -1110 214 -1110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCYAKG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 2.9e+000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.909091 0.000000 0.000000 0.090909 0.181818 0.000000 0.454545 0.363636 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCYAKG MEME-5 regular expression -------------------------------------------------------------------------------- TTGC[CT]A[GT]G -------------------------------------------------------------------------------- Time 18.73 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:24113588-24113668 1.76e-04 24_[+1(2.48e-05)]_27_[+4(5.37e-05)]_\ 13 chr4:169753115-169753195 2.81e-05 5_[+4(1.09e-05)]_22_[+2(3.83e-05)]_\ [+3(4.45e-05)]_29 chr15:42411247-42411327 1.49e-03 51_[+2(3.83e-05)]_[+3(6.53e-05)]_13 chr11:118799935-11880001 8.53e-01 80 chr5:175869030-175869110 4.09e-04 42_[+2(2.06e-05)]_30 chr1:155349578-155349658 8.72e-03 80 chr19:17865990-17866070 3.66e-03 57_[+2(2.06e-05)]_15 chr12:109592112-10959219 7.16e-04 11_[+1(2.48e-05)]_16_[+2(2.06e-05)]_\ 37 chr17:40518833-40518913 9.55e-02 32_[+1(4.55e-05)]_40 chr17:40594392-40594472 6.39e-02 39_[+1(4.55e-05)]_33 chr5:137203430-137203510 2.78e-02 16_[+2(3.83e-05)]_56 chr3:17472217-17472297 1.81e-03 30_[+2(3.83e-05)]_42 chr4:103753501-103753581 1.76e-03 54_[+3(4.45e-05)]_18 chr17:80550888-80550968 6.79e-03 2_[+3(6.53e-05)]_35_[+2(7.02e-05)]_\ [+3(6.53e-05)]_19 chr7:67080014-67080094 2.26e-02 17_[+1(4.55e-05)]_15_[+1(4.55e-05)]_\ 32 chr12:116720662-11672074 4.60e-02 43_[+1(4.55e-05)]_29 chr10:115479352-11547943 1.26e-02 67_[+2(2.06e-05)]_5 chr7:1766918-1766998 7.89e-02 56_[+2(5.55e-05)]_16 chr1:204119858-204119938 2.65e-04 26_[+3(2.43e-05)]_46 chr3:28384048-28384128 1.10e-02 14_[+1(4.55e-05)]_58 chr3:11623845-11623925 3.07e-03 37_[+1(2.48e-05)]_35 chr3:57262599-57262679 1.07e-01 36_[+1(2.48e-05)]_36 chr9:127458619-127458699 2.17e-03 44_[+1(2.48e-05)]_28 chr5:64808096-64808176 1.47e-04 38_[+2(3.83e-05)]_[+3(2.43e-05)]_26 chr7:142503771-142503851 5.85e-02 30_[+1(4.55e-05)]_42 chr2:203967184-203967264 3.19e-03 3_[+3(4.45e-05)]_69 chr11:63672783-63672863 1.65e-04 25_[+1(2.48e-05)]_47 chr19:4554874-4554954 2.95e-02 29_[+2(3.83e-05)]_43 chr7:95239035-95239115 5.36e-03 40_[+3(2.43e-05)]_32 chr6:33619341-33619421 8.74e-03 34_[+1(2.48e-05)]_38 chr12:32086642-32086722 2.21e-03 42_[+2(2.06e-05)]_[+3(2.43e-05)]_22 chr3:154753550-154753630 4.85e-03 68_[+3(2.43e-05)]_4 chr13:50074595-50074675 3.14e-01 80 chrX:22060392-22060472 8.14e-01 80 chr3:43020698-43020778 4.09e-03 26_[+2(5.55e-05)]_46 chr12:113569443-11356952 1.44e-01 80 chr3:196949821-196949901 6.21e-03 68_[+3(2.43e-05)]_4 chr6:125397647-125397727 5.95e-03 46_[+2(2.06e-05)]_26 chr14:100905808-10090588 3.33e-04 37_[+1(4.55e-05)]_35 chr3:113462243-113462323 3.02e-02 29_[+1(9.07e-05)]_43 chr6:107431523-107431603 2.55e-02 80 chr15:57551784-57551864 6.92e-03 41_[+3(6.53e-05)]_31 chr17:80551155-80551235 5.95e-03 30_[+2(7.02e-05)]_[+3(6.53e-05)]_34 chr1:17542689-17542769 5.06e-04 19_[+2(8.78e-05)]_53 chr5:78993206-78993286 5.03e-02 25_[+2(3.83e-05)]_47 chr3:150137897-150137977 3.93e-03 7_[+2(7.02e-05)]_65 chr1:198607211-198607291 1.65e-01 80 chr1:113218773-113218853 2.67e-02 35_[+2(3.83e-05)]_37 chr19:51059284-51059364 7.29e-04 29_[+1(2.48e-05)]_43 chrX:128631279-128631359 1.62e-02 42_[+1(2.48e-05)]_30 chr1:12679533-12679613 4.86e-02 80 chr12:94613826-94613906 1.52e-02 52_[+1(2.48e-05)]_20 chr14:70322054-70322134 2.62e-04 36_[+2(2.06e-05)]_[+3(2.43e-05)]_28 chr8:30659343-30659423 8.98e-03 37_[+2(3.83e-05)]_35 chr1:53391266-53391346 7.38e-05 20_[+2(3.83e-05)]_[+3(2.43e-05)]_44 chr5:692394-692474 9.57e-01 80 chr7:149325115-149325195 2.71e-02 38_[+3(4.45e-05)]_34 chr19:10204634-10204714 1.22e-02 14_[+1(4.55e-05)]_58 chr2:122247054-122247134 8.66e-02 50_[+1(9.07e-05)]_22 chr18:28825240-28825320 7.68e-02 42_[+1(4.55e-05)]_30 chr6:157138713-157138793 5.51e-02 46_[+2(3.83e-05)]_26 chr1:211721223-211721303 2.70e-02 41_[+1(2.48e-05)]_31 chr9:136029202-136029282 1.83e-01 80 chr16:12861987-12862067 7.22e-02 23_[+2(3.83e-05)]_49 chr9:79331404-79331484 7.58e-02 80 chr1:223417160-223417240 7.03e-02 80 chr18:10015344-10015424 7.95e-02 52_[+2(3.83e-05)]_20 chr2:197471998-197472078 1.59e-03 15_[+1(7.02e-05)]_57 chr5:34032256-34032336 1.51e-02 47_[+4(2.20e-05)]_25 chr20:55393567-55393647 1.44e-02 80 chr17:33917622-33917702 2.77e-03 38_[+2(3.83e-05)]_34 chr12:50643727-50643807 1.01e-01 47_[+1(7.02e-05)]_25 chr19:55737096-55737176 1.03e-01 80 chr5:38505659-38505739 4.41e-02 33_[+2(7.02e-05)]_39 chr15:64889517-64889597 3.34e-02 80 chr5:149598918-149598998 7.41e-04 44_[+2(2.06e-05)]_2_[+5(4.16e-05)]_\ 18 chr7:108206588-108206668 5.46e-02 15_[+1(4.55e-05)]_57 chr4:48339947-48340027 1.88e-03 39_[+2(2.06e-05)]_33 chr5:39193759-39193839 2.71e-01 80 chr1:71343249-71343329 3.31e-04 34_[+2(5.55e-05)]_[+3(2.43e-05)]_30 chr2:113442898-113442978 2.06e-02 58_[+2(2.06e-05)]_14 chr3:14224669-14224749 5.45e-03 45_[+2(2.06e-05)]_27 chr3:172235862-172235942 2.94e-02 7_[+4(1.09e-05)]_65 chr20:55820063-55820143 1.06e-01 35_[+1(4.55e-05)]_37 chr19:871682-871762 4.65e-02 80 chr1:197171134-197171214 4.30e-02 80 chr20:45991207-45991287 6.99e-03 80 chr17:53288430-53288510 1.67e-02 6_[+2(2.06e-05)]_66 chr3:12758146-12758226 3.40e-02 39_[+1(2.48e-05)]_33 chr10:91536581-91536661 1.60e-02 8_[+2(5.55e-05)]_29_[+2(5.55e-05)]_\ 27 chr3:14250773-14250853 2.71e-03 27_[+1(2.48e-05)]_7_[+4(9.04e-05)]_\ 30 chr17:16190028-16190108 2.72e-01 80 chr6:159477286-159477366 2.09e-02 10_[+1(2.48e-05)]_62 chr20:34421325-34421405 2.27e-02 35_[+1(9.07e-05)]_37 chr5:55471385-55471465 4.41e-01 80 chr18:19216863-19216943 6.64e-02 11_[+1(9.07e-05)]_61 chr1:241933603-241933683 7.97e-04 72_[+2(2.06e-05)] chr16:46773879-46773959 5.10e-02 35_[+3(8.26e-05)]_37 chr5:55289652-55289732 1.36e-01 33_[+1(9.07e-05)]_39 chr20:51041840-51041920 1.06e-03 17_[+2(2.06e-05)]_55 chr3:4869698-4869778 6.27e-02 80 chr1:93257323-93257403 1.66e-01 80 chr11:46849709-46849789 2.91e-04 37_[+3(8.26e-05)]_24_[+5(7.36e-05)]_\ 3 chr11:60760622-60760702 3.21e-01 80 chr8:29028698-29028778 1.03e-01 80 chr12:7281496-7281576 1.12e-04 37_[+1(4.55e-05)]_17_[+4(4.07e-05)]_\ 10 chr14:91815574-91815654 4.03e-01 80 chr11:46128507-46128587 2.45e-03 67_[+4(7.75e-05)]_5 chr12:121974469-12197454 1.65e-01 27_[+4(7.75e-05)]_45 chr2:47177532-47177612 9.96e-03 36_[+1(2.48e-05)]_36 chr4:81355451-81355531 1.00e-03 43_[+5(5.88e-05)]_29 chr9:100749973-100750053 7.28e-02 50_[+1(2.48e-05)]_22 chr9:98027659-98027739 1.70e-03 33_[+1(2.48e-05)]_39 chr1:33373231-33373311 1.08e-03 45_[+5(1.24e-05)]_9_[+2(8.78e-05)]_\ 10 chr19:4768964-4769044 3.51e-03 20_[+2(2.06e-05)]_[+3(8.26e-05)]_44 chr10:72701135-72701215 1.07e-01 46_[+2(3.83e-05)]_26 chr2:27170231-27170311 5.11e-03 51_[+4(1.09e-05)]_21 chr19:14193524-14193604 4.58e-03 80 chr3:122221126-122221206 1.14e-02 80 chr7:2759869-2759949 1.19e-03 18_[+2(5.55e-05)]_54 chr5:138514798-138514878 5.87e-02 32_[+1(2.48e-05)]_40 chr16:4026523-4026603 1.31e-04 15_[+3(8.26e-05)]_7_[+4(5.37e-05)]_\ 19_[+1(2.48e-05)]_15 chrX:37853213-37853293 4.35e-02 30_[+5(2.68e-05)]_42 chr22:31113631-31113711 5.73e-03 40_[+2(3.83e-05)]_32 chr1:90167498-90167578 3.75e-01 80 chr11:118798417-11879849 2.92e-02 80 chr1:33607536-33607616 1.08e-04 1_[+1(2.48e-05)]_8_[+4(4.07e-05)]_\ 55 chr11:57481469-57481549 1.06e-01 80 chr8:125538966-125539046 6.12e-02 80 chr2:183460512-183460592 4.09e-02 80 chr17:58150578-58150658 1.77e-02 24_[+1(9.07e-05)]_38_[+1(4.55e-05)]_\ 2 chr8:100020596-100020676 2.12e-02 80 chr2:157196009-157196089 1.91e-01 80 chr13:115077594-11507767 2.29e-01 44_[+1(9.07e-05)]_28 chr8:125622622-125622702 2.39e-02 42_[+5(4.16e-05)]_30 chr17:79680414-79680494 4.39e-02 80 chr21:17170036-17170116 3.56e-01 80 chr8:99539032-99539112 8.10e-03 35_[+2(3.83e-05)]_37 chr12:118831815-11883189 8.64e-02 80 chr8:99938263-99938343 3.53e-02 80 chr22:24530270-24530350 1.86e-01 22_[+5(2.68e-05)]_50 chr3:152005849-152005929 5.21e-02 34_[+1(2.48e-05)]_38 chr6:49621312-49621392 1.21e-02 80 chr15:87883758-87883838 1.55e-04 41_[+2(2.06e-05)]_[+3(2.43e-05)]_23 chr11:5146609-5146689 2.73e-01 80 chrX:71314891-71314971 1.33e-01 46_[+5(4.16e-05)]_7_[+5(4.16e-05)]_\ 11 chr17:79378723-79378803 4.62e-04 3_[+4(1.09e-05)]_29_[+1(4.55e-05)]_\ 32 chr19:10205177-10205257 1.78e-02 80 chr1:154968306-154968386 2.70e-01 80 chr5:43193551-43193631 4.59e-04 5_[+4(4.07e-05)]_25_[+1(4.55e-05)]_\ 34 chr1:1121024-1121104 4.51e-02 26_[+2(2.06e-05)]_46 chr10:15560489-15560569 6.67e-02 37_[+1(2.48e-05)]_35 chr12:105006399-10500647 6.67e-03 80 chr5:32563140-32563220 4.09e-01 80 chr1:100814962-100815042 6.25e-03 80 chr12:7275666-7275746 8.01e-05 5_[+4(9.04e-05)]_23_[+2(2.06e-05)]_\ [+3(6.53e-05)]_28 chr13:115017503-11501758 1.40e-01 80 chr4:169733090-169733170 7.07e-03 45_[+5(5.88e-05)]_27 chr6:27764083-27764163 6.23e-04 40_[+2(2.06e-05)]_[+3(6.53e-05)]_24 chr19:19517289-19517369 6.72e-03 11_[+1(4.55e-05)]_29_[+4(4.07e-05)]_\ 24 chr7:38368574-38368654 3.74e-04 20_[+2(3.83e-05)]_[+3(2.43e-05)]_44 chr7:39074934-39075014 6.37e-01 80 chr19:54684060-54684140 5.35e-02 28_[+5(2.68e-05)]_44 chr1:4546095-4546175 3.77e-03 34_[+1(2.48e-05)]_3_[+1(2.48e-05)]_\ 27 chr6:15987933-15988013 2.72e-02 41_[+1(2.48e-05)]_31 chr9:97344176-97344256 3.04e-02 58_[+3(4.45e-05)]_14 chr19:10203970-10204050 1.10e-02 14_[+4(3.13e-05)]_58 chr19:45651577-45651657 2.67e-02 25_[+2(3.83e-05)]_47 chr10:73600016-73600096 1.76e-01 45_[+5(2.68e-05)]_27 chr5:78795845-78795925 1.82e-01 80 chr1:89594648-89594728 1.38e-01 80 chr1:223418290-223418370 1.04e-02 28_[+2(2.06e-05)]_44 chr1:201644529-201644609 2.50e-03 80 chr6:31036735-31036815 2.26e-01 80 chr8:99283905-99283985 4.39e-04 37_[+2(2.06e-05)]_35 chr8:26986340-26986420 8.48e-04 30_[+5(9.09e-05)]_20_[+1(2.48e-05)]_\ 14 chr5:118395839-118395919 2.13e-01 80 chr7:156635594-156635674 3.40e-03 6_[+4(7.75e-05)]_40_[+2(8.78e-05)]_\ 18 chr7:30815772-30815852 3.90e-02 80 chr17:7117360-7117440 1.40e-01 80 chr2:179313741-179313821 7.39e-01 80 chr7:24517603-24517683 2.19e-01 80 chr7:16503276-16503356 1.11e-02 80 chr7:22214011-22214091 4.77e-02 80 chr11:66104273-66104353 6.19e-03 58_[+5(4.16e-05)]_14 chr7:112724639-112724719 4.94e-03 80 chr2:201630367-201630447 9.06e-02 80 chr20:43223466-43223546 5.67e-02 80 chr1:54821740-54821820 1.89e-02 80 chr15:48950548-48950628 9.58e-03 45_[+1(2.48e-05)]_27 chr12:1193153-1193233 1.06e-02 80 chr11:118796677-11879675 1.76e-03 24_[+1(4.55e-05)]_16_[+4(1.09e-05)]_\ 24 chr7:12767890-12767970 1.11e-02 9_[+1(2.48e-05)]_63 chr5:138517286-138517366 3.51e-03 47_[+3(4.45e-05)]_25 chr4:183184871-183184951 1.20e-02 80 chr6:43020956-43021036 2.69e-01 80 chr6:107367663-107367743 4.51e-02 80 chr8:125661503-125661583 9.78e-02 80 chr3:24347468-24347548 4.94e-04 28_[+4(5.37e-05)]_44 chr20:55669712-55669792 1.24e-02 55_[+1(2.48e-05)]_17 chr6:2739719-2739799 2.80e-01 80 chr3:126074983-126075063 1.60e-01 44_[+1(4.55e-05)]_28 chr11:125387189-12538726 4.44e-02 25_[+5(4.16e-05)]_47 chr1:61567331-61567411 1.08e-02 48_[+2(2.06e-05)]_24 chr12:68673324-68673404 7.36e-03 44_[+2(3.83e-05)]_28 chr1:113221386-113221466 1.45e-01 80 chr2:162065125-162065205 9.14e-02 80 chr6:41283856-41283936 1.04e-03 11_[+5(9.09e-05)]_8_[+2(8.78e-05)]_\ 45 chr3:34304704-34304784 2.88e-03 22_[+2(2.06e-05)]_50 chr1:150584062-150584142 3.27e-01 80 chr19:21326406-21326486 4.21e-03 30_[+3(2.43e-05)]_42 chr1:207186825-207186905 8.54e-02 80 chr3:4468526-4468606 1.82e-01 80 chr21:48023331-48023411 2.70e-01 80 chr7:134832250-134832330 3.32e-05 16_[+1(2.48e-05)]_8_[+2(7.02e-05)]_\ [+3(2.43e-05)]_32 chr19:17866892-17866972 2.94e-03 14_[+5(2.68e-05)]_43_[+4(4.07e-05)]_\ 7 chr19:47940063-47940143 9.44e-01 80 chr8:102219744-102219824 4.81e-01 80 chr16:23875188-23875268 9.86e-02 69_[+1(2.48e-05)]_3 chr10:25305068-25305148 4.08e-01 80 chr1:19797646-19797726 2.60e-02 5_[+1(2.48e-05)]_67 chr6:16006346-16006426 5.04e-02 31_[+1(4.55e-05)]_41 chr19:45731697-45731777 9.17e-04 39_[+1(7.02e-05)]_33 chrX:86773699-86773779 1.84e-02 16_[+1(2.48e-05)]_56 chr7:26505786-26505866 8.62e-04 42_[+2(2.06e-05)]_30 chr6:28740412-28740492 9.70e-03 11_[+1(9.07e-05)]_61 chr1:95587953-95588033 9.88e-04 68_[+4(3.13e-05)]_4 chr9:4986916-4986996 7.28e-02 80 chr11:12528070-12528150 3.51e-03 21_[+3(2.43e-05)]_51 chr7:115898907-115898987 3.20e-02 43_[+1(2.48e-05)]_29 chr11:28365065-28365145 8.39e-01 80 chr8:26482894-26482974 2.87e-01 80 chrX:48900805-48900885 1.17e-03 9_[+1(4.55e-05)]_4_[+4(4.07e-05)]_\ 16_[+4(1.09e-05)]_27 chr12:76507608-76507688 8.77e-01 80 chr11:71659774-71659854 4.56e-01 80 chr1:150848129-150848209 4.00e-02 80 chr1:94313701-94313781 6.74e-02 27_[+2(3.83e-05)]_45 chr1:100817833-100817913 3.73e-01 80 chr1:26962324-26962404 6.22e-02 35_[+1(9.07e-05)]_37 chr5:109028770-109028850 1.02e-02 57_[+3(4.45e-05)]_15 chr5:53682007-53682087 1.28e-02 14_[+5(9.09e-05)]_16_[+2(7.02e-05)]_\ 34 chrX:109132573-109132653 3.45e-03 26_[+2(2.06e-05)]_46 chr11:61248545-61248625 1.32e-03 15_[+5(2.68e-05)]_6_[+5(2.68e-05)]_\ 23_[+4(1.09e-05)]_12 chr4:87940527-87940607 2.52e-02 31_[+2(2.06e-05)]_41 chr10:76349160-76349240 3.17e-02 30_[+5(4.16e-05)]_42 chr1:93252206-93252286 2.22e-02 80 chr19:36451504-36451584 6.34e-02 15_[+4(2.20e-05)]_57 chr19:55690768-55690848 2.08e-03 64_[+5(1.24e-05)]_8 chr5:128432488-128432568 3.06e-02 18_[+2(7.02e-05)]_54 chr6:89229368-89229448 2.11e-02 31_[+2(2.06e-05)]_41 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n04.farnam.hpc.yale.internal ********************************************************************************