******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/MYBL2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr7:72476258-72476338 1.0000 80 chr17:33916711-33916791 1.0000 80 chr5:36878931-36879011 1.0000 80 chr10:33240253-33240333 1.0000 80 chr11:9921937-9922017 1.0000 80 chr3:48882802-48882882 1.0000 80 chr2:231263565-231263645 1.0000 80 chr4:164414254-164414334 1.0000 80 chrX:89713190-89713270 1.0000 80 chr15:67417952-67418032 1.0000 80 chr7:30391041-30391121 1.0000 80 chr12:9519958-9520038 1.0000 80 chr17:47466849-47466929 1.0000 80 chr15:32907551-32907631 1.0000 80 chr16:75795133-75795213 1.0000 80 chr2:189152862-189152942 1.0000 80 chr1:207865311-207865391 1.0000 80 chr7:25013751-25013831 1.0000 80 chr16:20774994-20775074 1.0000 80 chr4:178150598-178150678 1.0000 80 chr3:194241567-194241647 1.0000 80 chr2:55717862-55717942 1.0000 80 chr2:171163067-171163147 1.0000 80 chr20:35464160-35464240 1.0000 80 chr12:131732585-13173266 1.0000 80 chr2:61825775-61825855 1.0000 80 chr4:38907819-38907899 1.0000 80 chr8:99553499-99553579 1.0000 80 chr9:127516679-127516759 1.0000 80 chr9:35665154-35665234 1.0000 80 chr15:49482892-49482972 1.0000 80 chr7:112366241-112366321 1.0000 80 chr10:15885830-15885910 1.0000 80 chr3:94657034-94657114 1.0000 80 chr1:161735223-161735303 1.0000 80 chr12:14518577-14518657 1.0000 80 chr3:171589607-171589687 1.0000 80 chr7:14030464-14030544 1.0000 80 chr5:175612223-175612303 1.0000 80 chr10:85878554-85878634 1.0000 80 chr6:139811766-139811846 1.0000 80 chr9:100827928-100828008 1.0000 80 chr12:42820006-42820086 1.0000 80 chr11:78127560-78127640 1.0000 80 chrX:122983949-122984029 1.0000 80 chr1:172569220-172569300 1.0000 80 chr1:32908181-32908261 1.0000 80 chr15:83408014-83408094 1.0000 80 chr15:30918204-30918284 1.0000 80 chr6:28616602-28616682 1.0000 80 chr1:1446509-1446589 1.0000 80 chr5:72860594-72860674 1.0000 80 chr4:129733834-129733914 1.0000 80 chr2:122533017-122533097 1.0000 80 chr11:116910922-11691100 1.0000 80 chr3:177076320-177076400 1.0000 80 chr17:28019413-28019493 1.0000 80 chr7:86866431-86866511 1.0000 80 chr7:25188544-25188624 1.0000 80 chr19:19977546-19977626 1.0000 80 chrX:62571344-62571424 1.0000 80 chr10:22519463-22519543 1.0000 80 chr2:196217464-196217544 1.0000 80 chr2:114566786-114566866 1.0000 80 chr7:32767609-32767689 1.0000 80 chr11:111475250-11147533 1.0000 80 chr5:79487993-79488073 1.0000 80 chr15:83847772-83847852 1.0000 80 chr11:38242979-38243059 1.0000 80 chr5:134241541-134241621 1.0000 80 chr2:172370388-172370468 1.0000 80 chr2:54787650-54787730 1.0000 80 chr3:14264657-14264737 1.0000 80 chr14:31028394-31028474 1.0000 80 chr3:183072396-183072476 1.0000 80 chr19:53168889-53168969 1.0000 80 chr4:110834024-110834104 1.0000 80 chr2:236302973-236303053 1.0000 80 chr4:84206369-84206449 1.0000 80 chr13:24440748-24440828 1.0000 80 chr14:50359150-50359230 1.0000 80 chr14:31713260-31713340 1.0000 80 chr13:111156015-11115609 1.0000 80 chr15:80373892-80373972 1.0000 80 chr12:109128268-10912834 1.0000 80 chr9:140210743-140210823 1.0000 80 chr17:49511921-49512001 1.0000 80 chr5:157247853-157247933 1.0000 80 chr8:99890709-99890789 1.0000 80 chr15:58961520-58961600 1.0000 80 chrX:150151571-150151651 1.0000 80 chr3:49333055-49333135 1.0000 80 chr6:4777574-4777654 1.0000 80 chr11:111895302-11189538 1.0000 80 chr13:66650781-66650861 1.0000 80 chr3:138313081-138313161 1.0000 80 chr1:59972844-59972924 1.0000 80 chr12:100967435-10096751 1.0000 80 chr1:61543126-61543206 1.0000 80 chr5:147953942-147954022 1.0000 80 chr3:170290823-170290903 1.0000 80 chr16:24759753-24759833 1.0000 80 chr2:63147416-63147496 1.0000 80 chr8:144627971-144628051 1.0000 80 chr4:111232143-111232223 1.0000 80 chr5:53590075-53590155 1.0000 80 chr17:28475572-28475652 1.0000 80 chr7:134832167-134832247 1.0000 80 chr7:43849925-43850005 1.0000 80 chr4:18022461-18022541 1.0000 80 chr1:109761305-109761385 1.0000 80 chr7:16095366-16095446 1.0000 80 chrX:119376815-119376895 1.0000 80 chr6:57085072-57085152 1.0000 80 chr13:53088263-53088343 1.0000 80 chr9:37239687-37239767 1.0000 80 chr19:14492896-14492976 1.0000 80 chr10:129924681-12992476 1.0000 80 chr2:190465980-190466060 1.0000 80 chr11:91524414-91524494 1.0000 80 chr1:169452922-169453002 1.0000 80 chr2:32661426-32661506 1.0000 80 chr1:206138214-206138294 1.0000 80 chr20:35490434-35490514 1.0000 80 chr4:79632863-79632943 1.0000 80 chr7:133769705-133769785 1.0000 80 chr20:43672760-43672840 1.0000 80 chr10:51515538-51515618 1.0000 80 chr2:225450440-225450520 1.0000 80 chr4:86561271-86561351 1.0000 80 chr11:64808431-64808511 1.0000 80 chr8:97290891-97290971 1.0000 80 chr6:4865438-4865518 1.0000 80 chr11:18707725-18707805 1.0000 80 chr4:75585158-75585238 1.0000 80 chrX:124353877-124353957 1.0000 80 chr1:207693122-207693202 1.0000 80 chrX:153977090-153977170 1.0000 80 chr4:56369495-56369575 1.0000 80 chr2:86922374-86922454 1.0000 80 chr5:52541972-52542052 1.0000 80 chr11:59894824-59894904 1.0000 80 chr12:6603140-6603220 1.0000 80 chr3:101444489-101444569 1.0000 80 chr10:96152025-96152105 1.0000 80 chr18:43250369-43250449 1.0000 80 chr3:100120417-100120497 1.0000 80 chr17:39001004-39001084 1.0000 80 chr12:46918119-46918199 1.0000 80 chr1:231189475-231189555 1.0000 80 chrX:69509905-69509985 1.0000 80 chr21:37454647-37454727 1.0000 80 chr5:54736116-54736196 1.0000 80 chr17:56463028-56463108 1.0000 80 chr19:42049118-42049198 1.0000 80 chr4:73969993-73970073 1.0000 80 chr5:156570016-156570096 1.0000 80 chr1:51443182-51443262 1.0000 80 chr2:11376498-11376578 1.0000 80 chr9:126405037-126405117 1.0000 80 chr5:159848844-159848924 1.0000 80 chr2:201982243-201982323 1.0000 80 chr5:73687365-73687445 1.0000 80 chr6:13847183-13847263 1.0000 80 chr3:33690492-33690572 1.0000 80 chr4:1723198-1723278 1.0000 80 chr7:24950856-24950936 1.0000 80 chr4:187680552-187680632 1.0000 80 chr8:125538320-125538400 1.0000 80 chr14:54863526-54863606 1.0000 80 chr2:100078704-100078784 1.0000 80 chr12:12849076-12849156 1.0000 80 chr16:74330141-74330221 1.0000 80 chr12:120315302-12031538 1.0000 80 chr2:200775820-200775900 1.0000 80 chr3:132255050-132255130 1.0000 80 chr3:47764530-47764610 1.0000 80 chr15:56335953-56336033 1.0000 80 chr4:129733170-129733250 1.0000 80 chr13:49200295-49200375 1.0000 80 chr6:69286019-69286099 1.0000 80 chr3:159958665-159958745 1.0000 80 chr15:45145732-45145812 1.0000 80 chr8:26241556-26241636 1.0000 80 chr1:100459152-100459232 1.0000 80 chr2:12654995-12655075 1.0000 80 chr6:49555154-49555234 1.0000 80 chr21:38751093-38751173 1.0000 80 chr14:101782317-10178239 1.0000 80 chr9:102850645-102850725 1.0000 80 chr20:1448485-1448565 1.0000 80 chr6:80714403-80714483 1.0000 80 chr11:32915772-32915852 1.0000 80 chr5:162887605-162887685 1.0000 80 chr9:5675179-5675259 1.0000 80 chr1:160489935-160490015 1.0000 80 chr7:138124156-138124236 1.0000 80 chr11:12846073-12846153 1.0000 80 chr22:24372371-24372451 1.0000 80 chr9:115279207-115279287 1.0000 80 chr17:30468459-30468539 1.0000 80 chr10:94352864-94352944 1.0000 80 chr14:102997529-10299760 1.0000 80 chr2:201390846-201390926 1.0000 80 chr17:34257754-34257834 1.0000 80 chr3:125215668-125215748 1.0000 80 chr13:25485409-25485489 1.0000 80 chr4:175078561-175078641 1.0000 80 chr9:123883927-123884007 1.0000 80 chrX:154975597-154975677 1.0000 80 chr2:144910610-144910690 1.0000 80 chr6:147124956-147125036 1.0000 80 chr5:89826142-89826222 1.0000 80 chr15:77892423-77892503 1.0000 80 chr6:84686752-84686832 1.0000 80 chr7:129256578-129256658 1.0000 80 chr1:39851384-39851464 1.0000 80 chr11:129820137-12982021 1.0000 80 chr9:91926085-91926165 1.0000 80 chr3:151915844-151915924 1.0000 80 chr3:156837368-156837448 1.0000 80 chr6:70818225-70818305 1.0000 80 chr17:57233048-57233128 1.0000 80 chr11:94964523-94964603 1.0000 80 chrX:44203540-44203620 1.0000 80 chr1:244488488-244488568 1.0000 80 chr1:167893927-167894007 1.0000 80 chr9:15293811-15293891 1.0000 80 chr17:44156210-44156290 1.0000 80 chr2:73944194-73944274 1.0000 80 chr1:114201828-114201908 1.0000 80 chr11:119205077-11920515 1.0000 80 chr3:154966734-154966814 1.0000 80 chr11:58346313-58346393 1.0000 80 chr15:59030672-59030752 1.0000 80 chr18:70928597-70928677 1.0000 80 chr15:59988684-59988764 1.0000 80 chr11:35065684-35065764 1.0000 80 chrX:124288963-124289043 1.0000 80 chr3:20081179-20081259 1.0000 80 chr7:84467112-84467192 1.0000 80 chr20:54967240-54967320 1.0000 80 chr6:14600678-14600758 1.0000 80 chr6:90932630-90932710 1.0000 80 chr10:63170297-63170377 1.0000 80 chr5:138855086-138855166 1.0000 80 chr1:246592004-246592084 1.0000 80 chr14:37543672-37543752 1.0000 80 chr11:125757491-12575757 1.0000 80 chr6:31165810-31165890 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_MYBL2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/MYBL2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.267 C 0.237 G 0.231 T 0.266 Background letter frequencies (from file dataset with add-one prior applied): A 0.266 C 0.237 G 0.231 T 0.266 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTTBAAAW MEME-1 width = 8 sites = 175 llr = 1127 E-value = 3.2e-075 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTBAAAW MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2:::aa83 pos.-specific C 1::4::12 probability G 2::3:::1 matrix T 5aa3::14 bits 2.1 1.9 ** * 1.7 ** ** 1.5 ** ** Relative 1.3 ** ** Entropy 1.1 ** *** (9.3 bits) 0.8 ** *** 0.6 ** *** 0.4 ******* 0.2 ******* 0.0 -------- Multilevel TTTCAAAT consensus G G A sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTBAAAW MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:51443182-51443262 40 2.23e-05 TGTCCAAATA TTTCAAAT TTCCGCGCCT chr20:43672760-43672840 67 2.23e-05 TAACGGAAAT TTTCAAAT CTTGAA chr1:169452922-169453002 45 2.23e-05 ACAGATCAGC TTTCAAAT ATCAACACTG chr3:170290823-170290903 50 2.23e-05 ACAGATTCAG TTTCAAAT GTCAGGGTCC chr2:196217464-196217544 71 2.23e-05 TTACAGCAGT TTTCAAAT AC chr6:28616602-28616682 48 2.23e-05 CGGTTTTGTA TTTCAAAT CCAAAGAGAC chr1:172569220-172569300 48 2.23e-05 ACACAGCTTG TTTCAAAT TTATCAGCAA chr3:20081179-20081259 37 4.47e-05 GACGGGTACT TTTCAAAA ATATATTTTT chr15:59988684-59988764 70 4.47e-05 TTGTTCAAAT TTTCAAAA GCT chr11:12846073-12846153 29 4.47e-05 GGAACCAAGT TTTCAAAA AGAAGTCCGG chr16:74330141-74330221 12 4.47e-05 TAAATTTTGA TTTCAAAA GCAACGGCAC chr4:110834024-110834104 12 4.47e-05 TCATTCCACT TTTCAAAA AGAGAAACTG chr5:79487993-79488073 68 4.47e-05 CAAATGCACA TTTCAAAA GCAAG chr2:114566786-114566866 2 4.47e-05 c tttcaaaa gactctttgc chr3:177076320-177076400 35 4.47e-05 TCACTTCCAG TTTCAAAA TTTCCCAAGA chr2:171163067-171163147 44 4.47e-05 GACTTGTGTT TTTCAAAA TGTCCTTGTC chr16:20774994-20775074 42 4.47e-05 TTCCTTTCAA TTTCAAAA CTCCTCTATG chr10:63170297-63170377 50 6.64e-05 GATTGATCAC TTTGAAAT AGGTCATCAG chr15:77892423-77892503 13 6.64e-05 CTCATGGGAA TTTGAAAT CAGGGCACAG chr12:120315302-12031538 25 6.64e-05 GTCTTGGAAG TTTGAAAT TGGCGGTTAC chr3:101444489-101444569 72 6.64e-05 TGGGTGTAAA TTTGAAAT T chr5:134241541-134241621 9 6.64e-05 CATTTCAG TTTGAAAt gttttgtttt chr15:67417952-67418032 30 6.64e-05 TTATTTTTGA TTTGAAAT ATGAAAAGCA chr20:54967240-54967320 44 1.13e-04 AGGTTCTTCT TTTTAAAT AGGAGTTAAA chr4:175078561-175078641 14 1.13e-04 CCACTCTTTC TTTGAAAA TAAACTGCAC chr9:115279207-115279287 45 1.13e-04 gtttgcctta tttgaaaa caatttgaaa chr22:24372371-24372451 64 1.13e-04 GATTTCCATG TTTTAAAT AACATATTT chr17:56463028-56463108 68 1.13e-04 GATAAGTTGG TTTTAAAT TTCAa chr1:207693122-207693202 72 1.13e-04 gtttgcctta tttgaaaa c chr4:75585158-75585238 40 1.13e-04 GCCACACATT TTTGAAAA AGAAGGAGTG chr2:32661426-32661506 44 1.13e-04 CTCAGTGCTT TTTGAAAA AACGTTGAAG chr19:53168889-53168969 59 1.13e-04 ccatcactct ttttaaat tagccaatcg chr15:30918204-30918284 36 1.13e-04 GGGTCCTGAT TTTGAAAA GAGGAGTGGA chr3:171589607-171589687 28 1.13e-04 TCTGTTAATT TTTGAAAA CCTCCAACCC chr1:161735223-161735303 49 1.13e-04 GGTTACAGTA TTTTAAAT ATTCACTGGC chr4:38907819-38907899 33 1.13e-04 TATCCCTGAG TTTGAAAA AGCATTAAAC chr4:178150598-178150678 70 1.13e-04 TAGGTTTCAC TTTTAAAT CCT chr3:154966734-154966814 23 1.38e-04 tcctgacttt ttttaaaa accaaactgt chr17:34257754-34257834 49 1.38e-04 GCCCGCGCTT TTTTAAAA AGAGGCGCAT chr5:156570016-156570096 17 1.38e-04 CGTTACTGAC TTTTAAAA GTCGTAGCTG chr4:56369495-56369575 36 1.38e-04 ataaacaaga ttttaaaa ggctaggcac chr5:147953942-147954022 53 1.38e-04 ACGTGACAGA TTTTAAAA ATCAacatct chr1:61543126-61543206 35 1.38e-04 GCCAACAGCT TTTTAAAA AATCTCTTCC chr3:14264657-14264737 65 1.38e-04 tacatttgcc ttttaaaa ttttcaac chr16:75795133-75795213 8 1.38e-04 TTTCAAC TTTTAAAA TTTGTGACAA chr17:47466849-47466929 13 1.38e-04 TTCAGAGATT TTTTAAAA AGCAACTGAC chr5:36878931-36879011 11 1.38e-04 GCAGTTTGAA TTTTAAAA AGCCTGAAGC chr13:25485409-25485489 15 1.58e-04 GTCAAGAAAC TTTCAAAC CACTGCTCCA chr3:125215668-125215748 24 1.58e-04 TTTGTCCCCA TTTCAAAC TGACCACCAT chr5:53590075-53590155 71 1.58e-04 ctacagctgc tttcaaac ta chr11:111895302-11189538 18 1.58e-04 cagttaagtT TTTCAAAC ATTTGAAACA chr12:131732585-13173266 29 1.58e-04 TTCTGGGACT TTTCAAAC TGGAACTGAC chr11:35065684-35065764 53 1.97e-04 ttcaaactag gttcaaat aagacagaca chr18:70928597-70928677 26 1.97e-04 ttcacacctt gttcaaat aaggcaaaag chr2:73944194-73944274 17 1.97e-04 ttcaaaccat gttcaaat aaggcaaacg chr9:15293811-15293891 50 1.97e-04 ttggaaccgt gttcaaat aaagcaaact chr15:45145732-45145812 54 1.97e-04 TGATGGAGAA GTTCAAAT AAATTCTTCT chr14:54863526-54863606 28 1.97e-04 CCCGCGCGTC TTTCAAAG GTCTTCTAGG chr21:37454647-37454727 45 1.97e-04 CTCATAAACT GTTCAAAT ACAAACAACG chr11:116910922-11691100 36 1.97e-04 gaatgcttag gttcaaat cctggcgcca chr5:175612223-175612303 57 1.97e-04 atcagagaat gttcaaat gaacacagga chr17:44156210-44156290 34 2.36e-04 CACCCTCTTT GTTCAAAA GGAGTCTTAA chr5:162887605-162887685 11 2.36e-04 GAGATTTGAA TTTGAAAC CGGTAGGGAG chr12:12849076-12849156 47 2.36e-04 GGCGGAAAGT TTTGAAAC TTTTGCGCGC chr2:100078704-100078784 42 2.36e-04 CACGTGACTT TTTGAAAC TATGTACTTT chr4:1723198-1723278 22 2.36e-04 ACCGTCGGCG TTTGAAAC TCCGGCGCGC chrX:69509905-69509985 15 2.36e-04 CCGGGACGGA TTTGAAAC TTGGCGGTTA chr3:49333055-49333135 55 2.36e-04 TGATTCAAAT TTTGAAAC TAAACATATG chr1:231189475-231189555 31 2.80e-04 AGTTGACAAA ATTCAAAT GGAAACAATT chrX:124353877-124353957 56 2.80e-04 ccatggaatt attcaaat aagccaatca chr10:51515538-51515618 68 2.80e-04 CCTGTTTGTG TTTTAAAC AGGTT chr10:129924681-12992476 47 2.80e-04 GAAAACGAAG ATTCAAAT TCTGGCGCTA chr7:134832167-134832247 64 2.80e-04 CGGAAGCAAT TTTTAAAC TCTGGCCAG chr15:83847772-83847852 72 2.80e-04 ctgtagaatt attcaaat a chr11:111475250-11147533 13 2.80e-04 GAGGTTGACA ATTCAAAT GGTGTCCGTT chr9:35665154-35665234 57 2.80e-04 TCCGCGGCAG ATTCAAAT CCCAACCGCT chr2:189152862-189152942 39 2.80e-04 GGATCTACCA ATTCAAAT CCGTTATCTG chr10:33240253-33240333 11 2.80e-04 ATCACACAAA ATTCAAAT AATTCAAGCC chr6:31165810-31165890 15 3.41e-04 GGGGCGCAGA ATTCAAAA CGCTTGCGGT chr14:37543672-37543752 72 3.41e-04 acctacaaga attcaaaa g chrX:154975597-154975677 73 3.41e-04 TTCAGACACA TTTGAAAG chr4:73969993-73970073 29 3.41e-04 gattggtgag tttgaaag aagaaactga chr17:39001004-39001084 41 3.41e-04 accttaattt tttgaaag ataactttgt chr16:24759753-24759833 4 3.41e-04 AGA ATTCAAAA GAGAGTGAGT chr15:58961520-58961600 49 3.41e-04 AAACCACTGG ATTCAAAA GATAGGGAAG chr14:50359150-50359230 1 3.41e-04 . ATTCAAAA GAGCTGCAGA chr2:236302973-236303053 52 3.41e-04 gatctggctg tttgaaag tgtgtggcac chr19:19977546-19977626 23 3.41e-04 ggcctcccag tttgaaag gggtttttaa chr7:14030464-14030544 51 3.41e-04 TCAATTTCTA TTTGAAAG TTTCCTTCCT chrX:89713190-89713270 29 3.41e-04 gcagcgggaa tttgaaag cacaaaacct chr2:231263565-231263645 63 3.41e-04 gaaatcagct attcaaaa ataagcagaa chrX:124288963-124289043 8 4.03e-04 ttggtgc gtttaaat aaatccctga chr6:70818225-70818305 62 4.03e-04 AGCAATTTCA GTTGAAAA CAGAAATTCA chr19:42049118-42049198 28 4.03e-04 CTACTGATCC GTTGAAAA GGCCGTGAAT chr3:100120417-100120497 65 4.03e-04 TTAGAAGGAC TTTTAAAG ATGTGTGA chr12:109128268-10912834 56 4.03e-04 gccggtttag gtttaaat tcaggctcca chr2:54787650-54787730 37 4.03e-04 ACAACGTAAA GTTTAAAT TTAAAAAAAA chr7:25013751-25013831 5 4.03e-04 caca ttttaaag gctgaatagc chr4:164414254-164414334 47 4.03e-04 ctgtgtggca gttgaaaa atgaaagtgc chr5:52541972-52542052 63 4.47e-04 GCAGATGAAT GTTTAAAA AATCATCCAG chr4:129733834-129733914 54 4.47e-04 TCCGGAGACC GTTTAAAA GGAGCTTTAG chr8:99553499-99553579 73 4.47e-04 ggatctggtt gtttaaaa chr1:244488488-244488568 52 5.11e-04 tttgaacatg gttcaaac agttggctac chr9:37239687-37239767 23 5.11e-04 TAATTGGCCT GTTCAAAC CCTTTACAGT chr6:4777574-4777654 24 5.11e-04 gagccaggaa atttaaat ttaacgctga chr2:122533017-122533097 53 5.11e-04 ttgaaccatg gttcaaac ggatggctac chr15:49482892-49482972 69 5.11e-04 actcctgagt gttcaaac tgtg chr3:132255050-132255130 1 5.36e-04 . ATTTaaaa tacccagcag chr2:11376498-11376578 5 5.36e-04 AGCA ATTTAAAA AAATCTAGAG chr15:83408014-83408094 64 5.36e-04 ctggctaagg atttaaaa agttccagt chr1:246592004-246592084 30 5.92e-04 ttaactgctg attcaaac ccgcgcaatc chr11:119205077-11920515 52 5.92e-04 TTCGGGCGCC ATTCAAAC GGACCAATGA chr6:147124956-147125036 11 5.92e-04 ACTCAGGGCC ATTCAAAC GCGGCCGCGC chr17:30468459-30468539 26 5.92e-04 tggagcctag attcaaac ccaggaaatt chr2:12654995-12655075 33 5.92e-04 AGGGATAACA GTTCAAAG GAAACTGACA chr2:63147416-63147496 40 5.92e-04 gatatgatat attcaaac tgctaaaaga chr13:66650781-66650861 32 5.92e-04 TTCCTCTTtc tttcaact cttatcaggt chr7:112366241-112366321 43 5.92e-04 ccatggaatt attcaaac aagccaatca chr20:35464160-35464240 16 5.92e-04 TGATTGGCTA ATTCAAAC CCCAACAGAA chr2:201390846-201390926 53 6.68e-04 CGGCTGTGGC GTTTAAAC CCAAGCCGCA chr1:167893927-167894007 57 7.23e-04 ataacacagg tttgaact gataggttca chrX:44203540-44203620 71 7.23e-04 CATTTTTGTA TTTGAACT AA chr17:28019413-28019493 37 7.23e-04 CGGCTTGTCA TTTGAACT TTGAATTCAG chr11:125757491-12575757 20 8.26e-04 CGCTCTCCGG ATTTAAAC CTCAGCGGTC chr6:13847183-13847263 70 8.26e-04 gattggctgg tttgaaca att chr7:133769705-133769785 50 8.26e-04 gtttgccttt tttgaaca cagtttgaac chr7:16095366-16095446 73 8.26e-04 ttgaacacag tttgaaca chr4:18022461-18022541 66 8.26e-04 GGAGGAAGAA CTTCAAAT CCCAACC chr4:111232143-111232223 2 8.26e-04 a tttgaaca cagtttgaac chr1:59972844-59972924 32 8.26e-04 atcggcctta tttgaaca gagtttgaac chr4:84206369-84206449 4 8.26e-04 tca cttcaaat tactttcatt chr6:139811766-139811846 59 8.26e-04 ttgaacacag tttgaaca gttggctgcc chr14:102997529-10299760 70 9.71e-04 gtacttttgt tttcaata aaa chr9:5675179-5675259 9 9.71e-04 attggcta atttaaag agagtgactg chr6:49555154-49555234 3 9.71e-04 ta atttaaag agaatgacag chr3:159958665-159958745 20 9.71e-04 tgataggcta atttaaag agagtgacgg chr14:31713260-31713340 3 9.71e-04 ta atttaaag agagtgacgg chr2:61825775-61825855 3 9.71e-04 ta atttaaag agagtgacag chr6:14600678-14600758 71 1.09e-03 ccgtcactct ctttaaat ta chr17:57233048-57233128 48 1.09e-03 AGGATTTAAT TTTGAATT TTTCTTTATG chr6:84686752-84686832 71 1.09e-03 ccctcactct ctttaaat ta chr2:144910610-144910690 25 1.09e-03 ATCAGTGCTA TTTGAATT AGTCAGAGAG chr7:24950856-24950936 22 1.09e-03 CATCTGGTGG TTTGAATT TTATCAGTGG chr11:18707725-18707805 7 1.09e-03 aaaatt gttcaact tacctacttt chr8:97290891-97290971 57 1.09e-03 TGGAGATTTC TTTCAACG GTCGACCTTC chr19:14492896-14492976 5 1.09e-03 TGGG TTTGAATT TGATTTTTGT chr8:144627971-144628051 72 1.09e-03 ccatcactct ctttaaat c chr11:38242979-38243059 1 1.09e-03 . cttgaaaa gtgcaggaat chrX:122983949-122984029 59 1.09e-03 ccgtcacgct ctttaaat tagccaatcg chr3:194241567-194241647 71 1.09e-03 gaaatctcat tttgaatt gt chr6:90932630-90932710 47 1.19e-03 cccctgctct ctttaaaa cagccaatcg chr3:151915844-151915924 59 1.19e-03 tgtttgggga tttgaata ttatctctct chr1:100459152-100459232 44 1.19e-03 TATTCCAGAA CTTTAAAA GAAGAAGGAC chr8:125538320-125538400 10 1.19e-03 caccctata gttcaaca atacatagcc chr14:101782317-10178239 72 1.37e-03 tccagctctc tttaaaat a chr5:138855086-138855166 47 1.47e-03 TGAGATGTGC TTTAAAAA AGGACCGTTG chr15:56335953-56336033 5 1.47e-03 aacc gtttaact tcacttcagc chr6:57085072-57085152 66 1.57e-03 ccagaaaaca gtttaaca gtttttt chr9:127516679-127516759 64 1.57e-03 TTTTTAAGAT GTTCAATT TGTCTCTAC chr9:123883927-123884007 52 1.68e-03 CTGTGTTATG ATTTAACT CGCGGAGGGT chr17:28475572-28475652 53 1.68e-03 gattggctag tttgaatc ttgtcagttg chr7:84467112-84467192 41 1.77e-03 TAACTTATCT TTTTAATC TTTTGTCACA chr11:32915772-32915852 59 1.88e-03 AACGGTCCCA TTTGAATG ATAACTGGAA chrX:150151571-150151651 65 1.88e-03 GGTCGTTCTG TTTGAATG AATGATCC chr10:15885830-15885910 48 1.88e-03 tcaaagtgta gttcaacg gtagctatat chrX:153977090-153977170 33 2.09e-03 AGTGACAGGA ATTGAATT TAAGCAGCTG chr11:58346313-58346393 45 2.35e-03 AGACACAGCC GTTTAACG GTGAGAACGG chr9:126405037-126405117 11 2.35e-03 TTCAAAGCTC CTTCAACT GCCACTCTCA chr11:64808431-64808511 7 2.35e-03 CTACAC GTTAAAAA CACTAAGGGG chr5:72860594-72860674 47 2.35e-03 TGGCACAGCA GTTTAACG AGAGGAGAAG chr12:14518577-14518657 35 2.49e-03 GCGGGTTTGT TTTTGAAT CTgcggaggc chr15:32907551-32907631 73 2.57e-03 GGGGTCCTGA TTTTGAAA chr4:79632863-79632943 27 2.86e-03 CTTCTCAGCT GTTAAAAC CGTTGAGGGT chr17:49511921-49512001 71 3.39e-03 gtggcagata attggaat gt chr2:200775820-200775900 50 3.50e-03 CCAGACTTCT GTTCGAAC TTCCCGGCCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTBAAAW MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:51443182-51443262 2.2e-05 39_[+1]_33 chr20:43672760-43672840 2.2e-05 66_[+1]_6 chr1:169452922-169453002 2.2e-05 44_[+1]_28 chr3:170290823-170290903 2.2e-05 49_[+1]_23 chr2:196217464-196217544 2.2e-05 70_[+1]_2 chr6:28616602-28616682 2.2e-05 47_[+1]_25 chr1:172569220-172569300 2.2e-05 47_[+1]_25 chr3:20081179-20081259 4.5e-05 36_[+1]_36 chr15:59988684-59988764 4.5e-05 69_[+1]_3 chr11:12846073-12846153 4.5e-05 28_[+1]_44 chr16:74330141-74330221 4.5e-05 11_[+1]_61 chr4:110834024-110834104 4.5e-05 11_[+1]_61 chr5:79487993-79488073 4.5e-05 67_[+1]_5 chr2:114566786-114566866 4.5e-05 1_[+1]_71 chr3:177076320-177076400 4.5e-05 34_[+1]_38 chr2:171163067-171163147 4.5e-05 43_[+1]_29 chr16:20774994-20775074 4.5e-05 41_[+1]_31 chr10:63170297-63170377 6.6e-05 49_[+1]_23 chr15:77892423-77892503 6.6e-05 12_[+1]_60 chr12:120315302-12031538 6.6e-05 24_[+1]_48 chr3:101444489-101444569 6.6e-05 71_[+1]_1 chr5:134241541-134241621 6.6e-05 8_[+1]_64 chr15:67417952-67418032 6.6e-05 29_[+1]_43 chr20:54967240-54967320 0.00011 43_[+1]_29 chr4:175078561-175078641 0.00011 13_[+1]_59 chr9:115279207-115279287 0.00011 44_[+1]_28 chr22:24372371-24372451 0.00011 63_[+1]_9 chr17:56463028-56463108 0.00011 67_[+1]_5 chr1:207693122-207693202 0.00011 71_[+1]_1 chr4:75585158-75585238 0.00011 39_[+1]_33 chr2:32661426-32661506 0.00011 43_[+1]_29 chr19:53168889-53168969 0.00011 58_[+1]_14 chr15:30918204-30918284 0.00011 35_[+1]_37 chr3:171589607-171589687 0.00011 27_[+1]_45 chr1:161735223-161735303 0.00011 48_[+1]_24 chr4:38907819-38907899 0.00011 32_[+1]_40 chr4:178150598-178150678 0.00011 69_[+1]_3 chr3:154966734-154966814 0.00014 22_[+1]_50 chr17:34257754-34257834 0.00014 48_[+1]_24 chr5:156570016-156570096 0.00014 16_[+1]_56 chr4:56369495-56369575 0.00014 35_[+1]_37 chr5:147953942-147954022 0.00014 52_[+1]_20 chr1:61543126-61543206 0.00014 34_[+1]_38 chr3:14264657-14264737 0.00014 64_[+1]_8 chr16:75795133-75795213 0.00014 7_[+1]_65 chr17:47466849-47466929 0.00014 12_[+1]_60 chr5:36878931-36879011 0.00014 10_[+1]_62 chr13:25485409-25485489 0.00016 14_[+1]_58 chr3:125215668-125215748 0.00016 23_[+1]_49 chr5:53590075-53590155 0.00016 70_[+1]_2 chr11:111895302-11189538 0.00016 17_[+1]_55 chr12:131732585-13173266 0.00016 28_[+1]_44 chr11:35065684-35065764 0.0002 52_[+1]_20 chr18:70928597-70928677 0.0002 25_[+1]_47 chr2:73944194-73944274 0.0002 16_[+1]_56 chr9:15293811-15293891 0.0002 49_[+1]_23 chr15:45145732-45145812 0.0002 53_[+1]_19 chr14:54863526-54863606 0.0002 27_[+1]_45 chr21:37454647-37454727 0.0002 44_[+1]_28 chr11:116910922-11691100 0.0002 35_[+1]_37 chr5:175612223-175612303 0.0002 56_[+1]_16 chr17:44156210-44156290 0.00024 33_[+1]_39 chr5:162887605-162887685 0.00024 10_[+1]_62 chr12:12849076-12849156 0.00024 46_[+1]_26 chr2:100078704-100078784 0.00024 41_[+1]_31 chr4:1723198-1723278 0.00024 21_[+1]_51 chrX:69509905-69509985 0.00024 14_[+1]_58 chr3:49333055-49333135 0.00024 54_[+1]_18 chr1:231189475-231189555 0.00028 30_[+1]_42 chrX:124353877-124353957 0.00028 55_[+1]_17 chr10:51515538-51515618 0.00028 67_[+1]_5 chr10:129924681-12992476 0.00028 46_[+1]_26 chr7:134832167-134832247 0.00028 63_[+1]_9 chr15:83847772-83847852 0.00028 71_[+1]_1 chr11:111475250-11147533 0.00028 12_[+1]_60 chr9:35665154-35665234 0.00028 56_[+1]_16 chr2:189152862-189152942 0.00028 38_[+1]_34 chr10:33240253-33240333 0.00028 10_[+1]_62 chr6:31165810-31165890 0.00034 14_[+1]_58 chr14:37543672-37543752 0.00034 71_[+1]_1 chrX:154975597-154975677 0.00034 72_[+1] chr4:73969993-73970073 0.00034 28_[+1]_44 chr17:39001004-39001084 0.00034 40_[+1]_32 chr16:24759753-24759833 0.00034 3_[+1]_69 chr15:58961520-58961600 0.00034 48_[+1]_24 chr14:50359150-50359230 0.00034 [+1]_72 chr2:236302973-236303053 0.00034 51_[+1]_21 chr19:19977546-19977626 0.00034 22_[+1]_50 chr7:14030464-14030544 0.00034 50_[+1]_22 chrX:89713190-89713270 0.00034 28_[+1]_44 chr2:231263565-231263645 0.00034 62_[+1]_10 chrX:124288963-124289043 0.0004 7_[+1]_65 chr6:70818225-70818305 0.0004 61_[+1]_11 chr19:42049118-42049198 0.0004 27_[+1]_45 chr3:100120417-100120497 0.0004 64_[+1]_8 chr12:109128268-10912834 0.0004 55_[+1]_17 chr2:54787650-54787730 0.0004 36_[+1]_36 chr7:25013751-25013831 0.0004 4_[+1]_68 chr4:164414254-164414334 0.0004 46_[+1]_26 chr5:52541972-52542052 0.00045 62_[+1]_10 chr4:129733834-129733914 0.00045 53_[+1]_19 chr8:99553499-99553579 0.00045 72_[+1] chr1:244488488-244488568 0.00051 51_[+1]_21 chr9:37239687-37239767 0.00051 22_[+1]_50 chr6:4777574-4777654 0.00051 23_[+1]_49 chr2:122533017-122533097 0.00051 52_[+1]_20 chr15:49482892-49482972 0.00051 68_[+1]_4 chr3:132255050-132255130 0.00054 [+1]_72 chr2:11376498-11376578 0.00054 4_[+1]_68 chr15:83408014-83408094 0.00054 63_[+1]_9 chr1:246592004-246592084 0.00059 29_[+1]_43 chr11:119205077-11920515 0.00059 51_[+1]_21 chr6:147124956-147125036 0.00059 10_[+1]_62 chr17:30468459-30468539 0.00059 25_[+1]_47 chr2:12654995-12655075 0.00059 32_[+1]_40 chr2:63147416-63147496 0.00059 39_[+1]_33 chr13:66650781-66650861 0.00059 31_[+1]_41 chr7:112366241-112366321 0.00059 42_[+1]_30 chr20:35464160-35464240 0.00059 15_[+1]_57 chr2:201390846-201390926 0.00067 52_[+1]_20 chr1:167893927-167894007 0.00072 56_[+1]_16 chrX:44203540-44203620 0.00072 70_[+1]_2 chr17:28019413-28019493 0.00072 36_[+1]_36 chr11:125757491-12575757 0.00083 19_[+1]_53 chr6:13847183-13847263 0.00083 69_[+1]_3 chr7:133769705-133769785 0.00083 49_[+1]_23 chr7:16095366-16095446 0.00083 72_[+1] chr4:18022461-18022541 0.00083 65_[+1]_7 chr4:111232143-111232223 0.00083 1_[+1]_71 chr1:59972844-59972924 0.00083 31_[+1]_41 chr4:84206369-84206449 0.00083 3_[+1]_69 chr6:139811766-139811846 0.00083 58_[+1]_14 chr14:102997529-10299760 0.00097 69_[+1]_3 chr9:5675179-5675259 0.00097 8_[+1]_64 chr6:49555154-49555234 0.00097 2_[+1]_70 chr3:159958665-159958745 0.00097 19_[+1]_53 chr14:31713260-31713340 0.00097 2_[+1]_70 chr2:61825775-61825855 0.00097 2_[+1]_70 chr6:14600678-14600758 0.0011 70_[+1]_2 chr17:57233048-57233128 0.0011 47_[+1]_25 chr6:84686752-84686832 0.0011 70_[+1]_2 chr2:144910610-144910690 0.0011 24_[+1]_48 chr7:24950856-24950936 0.0011 21_[+1]_51 chr11:18707725-18707805 0.0011 6_[+1]_66 chr8:97290891-97290971 0.0011 56_[+1]_16 chr19:14492896-14492976 0.0011 4_[+1]_68 chr8:144627971-144628051 0.0011 71_[+1]_1 chr11:38242979-38243059 0.0011 [+1]_72 chrX:122983949-122984029 0.0011 58_[+1]_14 chr3:194241567-194241647 0.0011 70_[+1]_2 chr6:90932630-90932710 0.0012 46_[+1]_26 chr3:151915844-151915924 0.0012 58_[+1]_14 chr1:100459152-100459232 0.0012 43_[+1]_29 chr8:125538320-125538400 0.0012 9_[+1]_63 chr14:101782317-10178239 0.0014 71_[+1]_1 chr5:138855086-138855166 0.0015 46_[+1]_26 chr15:56335953-56336033 0.0015 4_[+1]_68 chr6:57085072-57085152 0.0016 65_[+1]_7 chr9:127516679-127516759 0.0016 63_[+1]_9 chr9:123883927-123884007 0.0017 51_[+1]_21 chr17:28475572-28475652 0.0017 52_[+1]_20 chr7:84467112-84467192 0.0018 40_[+1]_32 chr11:32915772-32915852 0.0019 58_[+1]_14 chrX:150151571-150151651 0.0019 64_[+1]_8 chr10:15885830-15885910 0.0019 47_[+1]_25 chrX:153977090-153977170 0.0021 32_[+1]_40 chr11:58346313-58346393 0.0024 44_[+1]_28 chr9:126405037-126405117 0.0024 10_[+1]_62 chr11:64808431-64808511 0.0024 6_[+1]_66 chr5:72860594-72860674 0.0024 46_[+1]_26 chr12:14518577-14518657 0.0025 34_[+1]_38 chr15:32907551-32907631 0.0026 72_[+1] chr4:79632863-79632943 0.0029 26_[+1]_46 chr17:49511921-49512001 0.0034 70_[+1]_2 chr2:200775820-200775900 0.0035 49_[+1]_23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTBAAAW MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTBAAAW width=8 seqs=175 chr1:51443182-51443262 ( 40) TTTCAAAT 1 chr20:43672760-43672840 ( 67) TTTCAAAT 1 chr1:169452922-169453002 ( 45) TTTCAAAT 1 chr3:170290823-170290903 ( 50) TTTCAAAT 1 chr2:196217464-196217544 ( 71) TTTCAAAT 1 chr6:28616602-28616682 ( 48) TTTCAAAT 1 chr1:172569220-172569300 ( 48) TTTCAAAT 1 chr3:20081179-20081259 ( 37) TTTCAAAA 1 chr15:59988684-59988764 ( 70) TTTCAAAA 1 chr11:12846073-12846153 ( 29) TTTCAAAA 1 chr16:74330141-74330221 ( 12) TTTCAAAA 1 chr4:110834024-110834104 ( 12) TTTCAAAA 1 chr5:79487993-79488073 ( 68) TTTCAAAA 1 chr2:114566786-114566866 ( 2) TTTCAAAA 1 chr3:177076320-177076400 ( 35) TTTCAAAA 1 chr2:171163067-171163147 ( 44) TTTCAAAA 1 chr16:20774994-20775074 ( 42) TTTCAAAA 1 chr10:63170297-63170377 ( 50) TTTGAAAT 1 chr15:77892423-77892503 ( 13) TTTGAAAT 1 chr12:120315302-12031538 ( 25) TTTGAAAT 1 chr3:101444489-101444569 ( 72) TTTGAAAT 1 chr5:134241541-134241621 ( 9) TTTGAAAT 1 chr15:67417952-67418032 ( 30) TTTGAAAT 1 chr20:54967240-54967320 ( 44) TTTTAAAT 1 chr4:175078561-175078641 ( 14) TTTGAAAA 1 chr9:115279207-115279287 ( 45) TTTGAAAA 1 chr22:24372371-24372451 ( 64) TTTTAAAT 1 chr17:56463028-56463108 ( 68) TTTTAAAT 1 chr1:207693122-207693202 ( 72) TTTGAAAA 1 chr4:75585158-75585238 ( 40) TTTGAAAA 1 chr2:32661426-32661506 ( 44) TTTGAAAA 1 chr19:53168889-53168969 ( 59) TTTTAAAT 1 chr15:30918204-30918284 ( 36) TTTGAAAA 1 chr3:171589607-171589687 ( 28) TTTGAAAA 1 chr1:161735223-161735303 ( 49) TTTTAAAT 1 chr4:38907819-38907899 ( 33) TTTGAAAA 1 chr4:178150598-178150678 ( 70) TTTTAAAT 1 chr3:154966734-154966814 ( 23) TTTTAAAA 1 chr17:34257754-34257834 ( 49) TTTTAAAA 1 chr5:156570016-156570096 ( 17) TTTTAAAA 1 chr4:56369495-56369575 ( 36) TTTTAAAA 1 chr5:147953942-147954022 ( 53) TTTTAAAA 1 chr1:61543126-61543206 ( 35) TTTTAAAA 1 chr3:14264657-14264737 ( 65) TTTTAAAA 1 chr16:75795133-75795213 ( 8) TTTTAAAA 1 chr17:47466849-47466929 ( 13) TTTTAAAA 1 chr5:36878931-36879011 ( 11) TTTTAAAA 1 chr13:25485409-25485489 ( 15) TTTCAAAC 1 chr3:125215668-125215748 ( 24) TTTCAAAC 1 chr5:53590075-53590155 ( 71) TTTCAAAC 1 chr11:111895302-11189538 ( 18) TTTCAAAC 1 chr12:131732585-13173266 ( 29) TTTCAAAC 1 chr11:35065684-35065764 ( 53) GTTCAAAT 1 chr18:70928597-70928677 ( 26) GTTCAAAT 1 chr2:73944194-73944274 ( 17) GTTCAAAT 1 chr9:15293811-15293891 ( 50) GTTCAAAT 1 chr15:45145732-45145812 ( 54) GTTCAAAT 1 chr14:54863526-54863606 ( 28) TTTCAAAG 1 chr21:37454647-37454727 ( 45) GTTCAAAT 1 chr11:116910922-11691100 ( 36) GTTCAAAT 1 chr5:175612223-175612303 ( 57) GTTCAAAT 1 chr17:44156210-44156290 ( 34) GTTCAAAA 1 chr5:162887605-162887685 ( 11) TTTGAAAC 1 chr12:12849076-12849156 ( 47) TTTGAAAC 1 chr2:100078704-100078784 ( 42) TTTGAAAC 1 chr4:1723198-1723278 ( 22) TTTGAAAC 1 chrX:69509905-69509985 ( 15) TTTGAAAC 1 chr3:49333055-49333135 ( 55) TTTGAAAC 1 chr1:231189475-231189555 ( 31) ATTCAAAT 1 chrX:124353877-124353957 ( 56) ATTCAAAT 1 chr10:51515538-51515618 ( 68) TTTTAAAC 1 chr10:129924681-12992476 ( 47) ATTCAAAT 1 chr7:134832167-134832247 ( 64) TTTTAAAC 1 chr15:83847772-83847852 ( 72) ATTCAAAT 1 chr11:111475250-11147533 ( 13) ATTCAAAT 1 chr9:35665154-35665234 ( 57) ATTCAAAT 1 chr2:189152862-189152942 ( 39) ATTCAAAT 1 chr10:33240253-33240333 ( 11) ATTCAAAT 1 chr6:31165810-31165890 ( 15) ATTCAAAA 1 chr14:37543672-37543752 ( 72) ATTCAAAA 1 chrX:154975597-154975677 ( 73) TTTGAAAG 1 chr4:73969993-73970073 ( 29) TTTGAAAG 1 chr17:39001004-39001084 ( 41) TTTGAAAG 1 chr16:24759753-24759833 ( 4) ATTCAAAA 1 chr15:58961520-58961600 ( 49) ATTCAAAA 1 chr14:50359150-50359230 ( 1) ATTCAAAA 1 chr2:236302973-236303053 ( 52) TTTGAAAG 1 chr19:19977546-19977626 ( 23) TTTGAAAG 1 chr7:14030464-14030544 ( 51) TTTGAAAG 1 chrX:89713190-89713270 ( 29) TTTGAAAG 1 chr2:231263565-231263645 ( 63) ATTCAAAA 1 chrX:124288963-124289043 ( 8) GTTTAAAT 1 chr6:70818225-70818305 ( 62) GTTGAAAA 1 chr19:42049118-42049198 ( 28) GTTGAAAA 1 chr3:100120417-100120497 ( 65) TTTTAAAG 1 chr12:109128268-10912834 ( 56) GTTTAAAT 1 chr2:54787650-54787730 ( 37) GTTTAAAT 1 chr7:25013751-25013831 ( 5) TTTTAAAG 1 chr4:164414254-164414334 ( 47) GTTGAAAA 1 chr5:52541972-52542052 ( 63) GTTTAAAA 1 chr4:129733834-129733914 ( 54) GTTTAAAA 1 chr8:99553499-99553579 ( 73) GTTTAAAA 1 chr1:244488488-244488568 ( 52) GTTCAAAC 1 chr9:37239687-37239767 ( 23) GTTCAAAC 1 chr6:4777574-4777654 ( 24) ATTTAAAT 1 chr2:122533017-122533097 ( 53) GTTCAAAC 1 chr15:49482892-49482972 ( 69) GTTCAAAC 1 chr3:132255050-132255130 ( 1) ATTTAAAA 1 chr2:11376498-11376578 ( 5) ATTTAAAA 1 chr15:83408014-83408094 ( 64) ATTTAAAA 1 chr1:246592004-246592084 ( 30) ATTCAAAC 1 chr11:119205077-11920515 ( 52) ATTCAAAC 1 chr6:147124956-147125036 ( 11) ATTCAAAC 1 chr17:30468459-30468539 ( 26) ATTCAAAC 1 chr2:12654995-12655075 ( 33) GTTCAAAG 1 chr2:63147416-63147496 ( 40) ATTCAAAC 1 chr13:66650781-66650861 ( 32) TTTCAACT 1 chr7:112366241-112366321 ( 43) ATTCAAAC 1 chr20:35464160-35464240 ( 16) ATTCAAAC 1 chr2:201390846-201390926 ( 53) GTTTAAAC 1 chr1:167893927-167894007 ( 57) TTTGAACT 1 chrX:44203540-44203620 ( 71) TTTGAACT 1 chr17:28019413-28019493 ( 37) TTTGAACT 1 chr11:125757491-12575757 ( 20) ATTTAAAC 1 chr6:13847183-13847263 ( 70) TTTGAACA 1 chr7:133769705-133769785 ( 50) TTTGAACA 1 chr7:16095366-16095446 ( 73) TTTGAACA 1 chr4:18022461-18022541 ( 66) CTTCAAAT 1 chr4:111232143-111232223 ( 2) TTTGAACA 1 chr1:59972844-59972924 ( 32) TTTGAACA 1 chr4:84206369-84206449 ( 4) CTTCAAAT 1 chr6:139811766-139811846 ( 59) TTTGAACA 1 chr14:102997529-10299760 ( 70) TTTCAATA 1 chr9:5675179-5675259 ( 9) ATTTAAAG 1 chr6:49555154-49555234 ( 3) ATTTAAAG 1 chr3:159958665-159958745 ( 20) ATTTAAAG 1 chr14:31713260-31713340 ( 3) ATTTAAAG 1 chr2:61825775-61825855 ( 3) ATTTAAAG 1 chr6:14600678-14600758 ( 71) CTTTAAAT 1 chr17:57233048-57233128 ( 48) TTTGAATT 1 chr6:84686752-84686832 ( 71) CTTTAAAT 1 chr2:144910610-144910690 ( 25) TTTGAATT 1 chr7:24950856-24950936 ( 22) TTTGAATT 1 chr11:18707725-18707805 ( 7) GTTCAACT 1 chr8:97290891-97290971 ( 57) TTTCAACG 1 chr19:14492896-14492976 ( 5) TTTGAATT 1 chr8:144627971-144628051 ( 72) CTTTAAAT 1 chr11:38242979-38243059 ( 1) CTTGAAAA 1 chrX:122983949-122984029 ( 59) CTTTAAAT 1 chr3:194241567-194241647 ( 71) TTTGAATT 1 chr6:90932630-90932710 ( 47) CTTTAAAA 1 chr3:151915844-151915924 ( 59) TTTGAATA 1 chr1:100459152-100459232 ( 44) CTTTAAAA 1 chr8:125538320-125538400 ( 10) GTTCAACA 1 chr14:101782317-10178239 ( 72) TTTAAAAT 1 chr5:138855086-138855166 ( 47) TTTAAAAA 1 chr15:56335953-56336033 ( 5) GTTTAACT 1 chr6:57085072-57085152 ( 66) GTTTAACA 1 chr9:127516679-127516759 ( 64) GTTCAATT 1 chr9:123883927-123884007 ( 52) ATTTAACT 1 chr17:28475572-28475652 ( 53) TTTGAATC 1 chr7:84467112-84467192 ( 41) TTTTAATC 1 chr11:32915772-32915852 ( 59) TTTGAATG 1 chrX:150151571-150151651 ( 65) TTTGAATG 1 chr10:15885830-15885910 ( 48) GTTCAACG 1 chrX:153977090-153977170 ( 33) ATTGAATT 1 chr11:58346313-58346393 ( 45) GTTTAACG 1 chr9:126405037-126405117 ( 11) CTTCAACT 1 chr11:64808431-64808511 ( 7) GTTAAAAA 1 chr5:72860594-72860674 ( 47) GTTTAACG 1 chr12:14518577-14518657 ( 35) TTTTGAAT 1 chr15:32907551-32907631 ( 73) TTTTGAAA 1 chr4:79632863-79632943 ( 27) GTTAAAAC 1 chr17:49511921-49512001 ( 71) ATTGGAAT 1 chr2:200775820-200775900 ( 50) GTTCGAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTBAAAW MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.04247 E= 3.2e-075 -46 -205 -21 104 -1410 -1410 -1410 191 -1410 -1410 -1410 191 -354 74 34 13 187 -1410 -333 -1410 191 -1410 -1410 -1410 161 -105 -1410 -184 36 -47 -88 44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTBAAAW MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 175 E= 3.2e-075 0.194286 0.057143 0.200000 0.548571 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.022857 0.394286 0.291429 0.291429 0.977143 0.000000 0.022857 0.000000 1.000000 0.000000 0.000000 0.000000 0.811429 0.114286 0.000000 0.074286 0.342857 0.171429 0.125714 0.360000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTBAAAW MEME-1 regular expression -------------------------------------------------------------------------------- [TG]TT[CGT]AAA[TA] -------------------------------------------------------------------------------- Time 4.85 secs. ******************************************************************************** ******************************************************************************** MOTIF KGWTTGGY MEME-2 width = 8 sites = 40 llr = 343 E-value = 1.2e-011 ******************************************************************************** -------------------------------------------------------------------------------- Motif KGWTTGGY MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1:6::::: pos.-specific C 1::::::6 probability G 4a:::aa: matrix T 3:4aa::4 bits 2.1 * ** 1.9 * **** 1.7 * **** 1.5 * **** Relative 1.3 * **** Entropy 1.1 * ***** (12.4 bits) 0.8 ******* 0.6 ******* 0.4 ******* 0.2 ******** 0.0 -------- Multilevel GGATTGGC consensus T T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGWTTGGY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:13847183-13847263 59 1.27e-05 acacgggcag ggattggc tggtttgaac chr12:6603140-6603220 56 1.27e-05 TGCCTGCCGG GGATTGGC CGGATTCTCC chr17:28475572-28475652 42 1.27e-05 aaacagttta ggattggc tagtttgaat chr4:111232143-111232223 56 1.27e-05 tatggctctg ggattggc caagacttag chr7:138124156-138124236 19 2.54e-05 tggggagagt ggtttggc gggaaaaatg chr9:5675179-5675259 34 2.54e-05 ctgggcgagt ggtttggc gggaaaaatg chr3:159958665-159958745 45 2.54e-05 cggggtgagt ggtttggc gggaaaaatg chr14:31713260-31713340 28 2.54e-05 cggggtgagt ggtttggc aggaaaaaat chr1:1446509-1446589 31 2.54e-05 cggggtgagt ggtttggc gggaaaaatg chr9:100827928-100828008 30 2.54e-05 GAAtgataac ggtttggc tgtgtctcca chr10:85878554-85878634 21 2.54e-05 cggggggagt ggtttggc gtgaaaaatg chr3:194241567-194241647 41 2.54e-05 gggatgatat ggtttggc tgtgtcccca chr1:244488488-244488568 73 4.00e-05 tggctacatt tgattggc chr9:123883927-123884007 21 4.00e-05 AGTTTGGGCG TGATTGGC CCCTGGGAGC chr13:25485409-25485489 57 4.00e-05 TTTTCTTTCC TGATTGGC ACGTGACGCT chr12:46918119-46918199 3 4.00e-05 tc tgattggc ccagctcatc chr20:35464160-35464240 6 4.00e-05 GATGC TGATTGGC TAATTCAAAC chr2:231263565-231263645 12 4.00e-05 agggagagtg tgattggc ttgtttgaat chr4:129733170-129733250 65 5.43e-05 GGGGCCGAGC GGATTGGT GCAGCTGG chr4:84206369-84206449 60 5.43e-05 gagaaataac ggattggt taacattagg chrX:150151571-150151651 27 6.89e-05 GGTCTTTCCC TGTTTGGC CTCCGTAGCC chr15:30918204-30918284 73 6.89e-05 TGTGGAGCGC TGTTTGGC chr3:47764530-47764610 12 8.32e-05 gggaaatact ggtttggt gtgtgagagt chr17:49511921-49512001 6 8.32e-05 cgagt ggtttggt gggaaaacgt chr2:61825775-61825855 28 8.32e-05 caggttgagt ggtttggt gggaaaaatt chr9:115279207-115279287 16 9.96e-05 tggaaacagt tgattggt tacaactccg chr5:73687365-73687445 47 9.96e-05 agaaacagcc tgattggt tacagctctg chr4:73969993-73970073 18 9.96e-05 gagtaatatc tgattggt gagtttgaaa chr2:225450440-225450520 25 9.96e-05 AGGTGGTTGC TGATTGGT GGAGCTCGGA chr5:72860594-72860674 71 9.96e-05 GAAGCAAAGT TGATTGGT AG chr17:57233048-57233128 18 1.29e-04 ACCGTGTCTA CGATTGGC CTCTCCCTGA chr2:201390846-201390926 17 1.29e-04 TCGCAGGACC CGATTGGC TGATGGGGCA chr12:131732585-13173266 9 1.44e-04 CTCACCCC AGATTGGC CTTTCTGGGA chr1:207865311-207865391 66 1.57e-04 tatagctcag cgtttggc ttatttg chr2:55717862-55717942 29 1.71e-04 AGACCAGAGA AGTTTGGC GCTGAGTCAT chr1:207693122-207693202 43 1.86e-04 cagaaacagc cgattggt tatagctcag chr7:25188544-25188624 61 2.02e-04 agaaacagcc agattggt tacaccttaa chr4:164414254-164414334 68 2.02e-04 aaagtgcctc agattggt cccct chr2:190465980-190466060 40 2.17e-04 ACTTCCTGCC CGTTTGGT CACCTAGGAA chr1:100459152-100459232 13 2.33e-04 TCAGACTACC AGTTTGGT TCTAACAATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGWTTGGY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:13847183-13847263 1.3e-05 58_[+2]_14 chr12:6603140-6603220 1.3e-05 55_[+2]_17 chr17:28475572-28475652 1.3e-05 41_[+2]_31 chr4:111232143-111232223 1.3e-05 55_[+2]_17 chr7:138124156-138124236 2.5e-05 18_[+2]_54 chr9:5675179-5675259 2.5e-05 33_[+2]_39 chr3:159958665-159958745 2.5e-05 44_[+2]_28 chr14:31713260-31713340 2.5e-05 27_[+2]_45 chr1:1446509-1446589 2.5e-05 30_[+2]_42 chr9:100827928-100828008 2.5e-05 29_[+2]_43 chr10:85878554-85878634 2.5e-05 20_[+2]_52 chr3:194241567-194241647 2.5e-05 40_[+2]_32 chr1:244488488-244488568 4e-05 72_[+2] chr9:123883927-123884007 4e-05 20_[+2]_52 chr13:25485409-25485489 4e-05 56_[+2]_16 chr12:46918119-46918199 4e-05 2_[+2]_70 chr20:35464160-35464240 4e-05 5_[+2]_67 chr2:231263565-231263645 4e-05 11_[+2]_61 chr4:129733170-129733250 5.4e-05 64_[+2]_8 chr4:84206369-84206449 5.4e-05 59_[+2]_13 chrX:150151571-150151651 6.9e-05 26_[+2]_46 chr15:30918204-30918284 6.9e-05 72_[+2] chr3:47764530-47764610 8.3e-05 11_[+2]_61 chr17:49511921-49512001 8.3e-05 5_[+2]_67 chr2:61825775-61825855 8.3e-05 27_[+2]_45 chr9:115279207-115279287 0.0001 15_[+2]_57 chr5:73687365-73687445 0.0001 46_[+2]_26 chr4:73969993-73970073 0.0001 17_[+2]_55 chr2:225450440-225450520 0.0001 24_[+2]_48 chr5:72860594-72860674 0.0001 70_[+2]_2 chr17:57233048-57233128 0.00013 17_[+2]_55 chr2:201390846-201390926 0.00013 16_[+2]_56 chr12:131732585-13173266 0.00014 8_[+2]_64 chr1:207865311-207865391 0.00016 65_[+2]_7 chr2:55717862-55717942 0.00017 28_[+2]_44 chr1:207693122-207693202 0.00019 42_[+2]_30 chr7:25188544-25188624 0.0002 60_[+2]_12 chr4:164414254-164414334 0.0002 67_[+2]_5 chr2:190465980-190466060 0.00022 39_[+2]_33 chr1:100459152-100459232 0.00023 12_[+2]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGWTTGGY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KGWTTGGY width=8 seqs=40 chr6:13847183-13847263 ( 59) GGATTGGC 1 chr12:6603140-6603220 ( 56) GGATTGGC 1 chr17:28475572-28475652 ( 42) GGATTGGC 1 chr4:111232143-111232223 ( 56) GGATTGGC 1 chr7:138124156-138124236 ( 19) GGTTTGGC 1 chr9:5675179-5675259 ( 34) GGTTTGGC 1 chr3:159958665-159958745 ( 45) GGTTTGGC 1 chr14:31713260-31713340 ( 28) GGTTTGGC 1 chr1:1446509-1446589 ( 31) GGTTTGGC 1 chr9:100827928-100828008 ( 30) GGTTTGGC 1 chr10:85878554-85878634 ( 21) GGTTTGGC 1 chr3:194241567-194241647 ( 41) GGTTTGGC 1 chr1:244488488-244488568 ( 73) TGATTGGC 1 chr9:123883927-123884007 ( 21) TGATTGGC 1 chr13:25485409-25485489 ( 57) TGATTGGC 1 chr12:46918119-46918199 ( 3) TGATTGGC 1 chr20:35464160-35464240 ( 6) TGATTGGC 1 chr2:231263565-231263645 ( 12) TGATTGGC 1 chr4:129733170-129733250 ( 65) GGATTGGT 1 chr4:84206369-84206449 ( 60) GGATTGGT 1 chrX:150151571-150151651 ( 27) TGTTTGGC 1 chr15:30918204-30918284 ( 73) TGTTTGGC 1 chr3:47764530-47764610 ( 12) GGTTTGGT 1 chr17:49511921-49512001 ( 6) GGTTTGGT 1 chr2:61825775-61825855 ( 28) GGTTTGGT 1 chr9:115279207-115279287 ( 16) TGATTGGT 1 chr5:73687365-73687445 ( 47) TGATTGGT 1 chr4:73969993-73970073 ( 18) TGATTGGT 1 chr2:225450440-225450520 ( 25) TGATTGGT 1 chr5:72860594-72860674 ( 71) TGATTGGT 1 chr17:57233048-57233128 ( 18) CGATTGGC 1 chr2:201390846-201390926 ( 17) CGATTGGC 1 chr12:131732585-13173266 ( 9) AGATTGGC 1 chr1:207865311-207865391 ( 66) CGTTTGGC 1 chr2:55717862-55717942 ( 29) AGTTTGGC 1 chr1:207693122-207693202 ( 43) CGATTGGT 1 chr7:25188544-25188624 ( 61) AGATTGGT 1 chr4:164414254-164414334 ( 68) AGATTGGT 1 chr2:190465980-190466060 ( 40) CGTTTGGT 1 chr1:100459152-100459232 ( 13) AGTTTGGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGWTTGGY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.3065 E= 1.2e-011 -109 -92 88 29 -1197 -1197 212 -1197 111 -1197 -1197 68 -1197 -1197 -1197 191 -1197 -1197 -1197 191 -1197 -1197 212 -1197 -1197 -1197 212 -1197 -1197 140 -1197 50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGWTTGGY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 40 E= 1.2e-011 0.125000 0.125000 0.425000 0.325000 0.000000 0.000000 1.000000 0.000000 0.575000 0.000000 0.000000 0.425000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.625000 0.000000 0.375000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGWTTGGY MEME-2 regular expression -------------------------------------------------------------------------------- [GT]G[AT]TTGG[CT] -------------------------------------------------------------------------------- Time 8.28 secs. ******************************************************************************** ******************************************************************************** MOTIF MTGAGTCA MEME-3 width = 8 sites = 28 llr = 264 E-value = 5.6e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif MTGAGTCA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 4::a:::a pos.-specific C 4:::3:a: probability G 1:a:7::: matrix T :a:::a:: bits 2.1 * * 1.9 *** *** 1.7 *** *** 1.5 *** *** Relative 1.3 ******* Entropy 1.1 ******* (13.6 bits) 0.8 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ATGAGTCA consensus C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTGAGTCA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr5:89826142-89826222 6 1.50e-05 ATTAA CTGAGTCA TTGGTAGTCA chr14:101782317-10178239 9 1.50e-05 tagtcatc ctgagtca cctgttctgt chr2:86922374-86922454 8 1.50e-05 agtcatc ctgagtca cctgttctgt chr13:111156015-11115609 15 1.50e-05 ACGGCAGGCG CTGAGTCA CGGCTCAGGC chr2:55717862-55717942 38 1.50e-05 AAGTTTGGCG CTGAGTCA TGCTTGTGGC chr15:67417952-67418032 71 1.50e-05 ACTGACTCCT CTGAGTCA TG chr7:138124156-138124236 61 3.18e-05 gataatcaga atgagtca gggtagagta chr6:49555154-49555234 66 3.18e-05 ggtaatcgga atgagtca gggatga chr12:46918119-46918199 38 3.18e-05 gctggaccac atgagtca taagccactg chr11:59894824-59894904 60 3.18e-05 cagttgagtc atgagtca tgagtccagg chr4:56369495-56369575 19 3.18e-05 atcaacatgg atgagtca taaacaagat chr4:75585158-75585238 68 3.18e-05 GAGTTGTTAT ATGAGTCA TAAGA chr2:190465980-190466060 23 3.18e-05 GTGAACTTCT ATGAGTCA CTTCCTGCCC chr13:53088263-53088343 52 3.18e-05 cacagctctg atgagtca gcagccatca chr17:49511921-49512001 42 3.18e-05 agtgaggagg atgagtca gggcagaaca chr1:32908181-32908261 30 3.18e-05 agggtggcta atgagtca gggtggagca chr10:85878554-85878634 63 3.18e-05 ggtaatggga atgagtca gggtggagta chr2:61825775-61825855 70 3.18e-05 ggaaattgga atgagtca ggg chr6:14600678-14600758 3 4.72e-05 cc ctgactca ttctgattac chr6:84686752-84686832 4 4.72e-05 acc ctgactca ttatccaccc chr7:43849925-43850005 9 4.72e-05 gctccatc ctgactca ttccgatttc chr8:144627971-144628051 4 4.72e-05 acc ctgactca ttccagttac chr19:53168889-53168969 7 4.72e-05 tccaac ctgactca ttccataatc chr11:9921937-9922017 19 4.72e-05 ctgctccgcc ctgactca ttctccaccc chr16:24759753-24759833 16 7.91e-05 TCAAAAGAGA GTGAGTCA TGGCCACAGT chr4:73969993-73970073 53 9.42e-05 ctgagcatgt gtgactca gctcattTGA chr1:1446509-1446589 71 9.42e-05 gtaactaaag gtgactca gg chr17:47466849-47466929 43 9.42e-05 gcccagtgca gtgactca tgcctgtaat -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTGAGTCA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:89826142-89826222 1.5e-05 5_[+3]_67 chr14:101782317-10178239 1.5e-05 8_[+3]_64 chr2:86922374-86922454 1.5e-05 7_[+3]_65 chr13:111156015-11115609 1.5e-05 14_[+3]_58 chr2:55717862-55717942 1.5e-05 37_[+3]_35 chr15:67417952-67418032 1.5e-05 70_[+3]_2 chr7:138124156-138124236 3.2e-05 60_[+3]_12 chr6:49555154-49555234 3.2e-05 65_[+3]_7 chr12:46918119-46918199 3.2e-05 37_[+3]_35 chr11:59894824-59894904 3.2e-05 59_[+3]_13 chr4:56369495-56369575 3.2e-05 18_[+3]_54 chr4:75585158-75585238 3.2e-05 67_[+3]_5 chr2:190465980-190466060 3.2e-05 22_[+3]_50 chr13:53088263-53088343 3.2e-05 51_[+3]_21 chr17:49511921-49512001 3.2e-05 41_[+3]_31 chr1:32908181-32908261 3.2e-05 29_[+3]_43 chr10:85878554-85878634 3.2e-05 62_[+3]_10 chr2:61825775-61825855 3.2e-05 69_[+3]_3 chr6:14600678-14600758 4.7e-05 2_[+3]_70 chr6:84686752-84686832 4.7e-05 3_[+3]_69 chr7:43849925-43850005 4.7e-05 8_[+3]_64 chr8:144627971-144628051 4.7e-05 3_[+3]_69 chr19:53168889-53168969 4.7e-05 6_[+3]_66 chr11:9921937-9922017 4.7e-05 18_[+3]_54 chr16:24759753-24759833 7.9e-05 15_[+3]_57 chr4:73969993-73970073 9.4e-05 52_[+3]_20 chr1:1446509-1446589 9.4e-05 70_[+3]_2 chr17:47466849-47466929 9.4e-05 42_[+3]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTGAGTCA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MTGAGTCA width=8 seqs=28 chr5:89826142-89826222 ( 6) CTGAGTCA 1 chr14:101782317-10178239 ( 9) CTGAGTCA 1 chr2:86922374-86922454 ( 8) CTGAGTCA 1 chr13:111156015-11115609 ( 15) CTGAGTCA 1 chr2:55717862-55717942 ( 38) CTGAGTCA 1 chr15:67417952-67418032 ( 71) CTGAGTCA 1 chr7:138124156-138124236 ( 61) ATGAGTCA 1 chr6:49555154-49555234 ( 66) ATGAGTCA 1 chr12:46918119-46918199 ( 38) ATGAGTCA 1 chr11:59894824-59894904 ( 60) ATGAGTCA 1 chr4:56369495-56369575 ( 19) ATGAGTCA 1 chr4:75585158-75585238 ( 68) ATGAGTCA 1 chr2:190465980-190466060 ( 23) ATGAGTCA 1 chr13:53088263-53088343 ( 52) ATGAGTCA 1 chr17:49511921-49512001 ( 42) ATGAGTCA 1 chr1:32908181-32908261 ( 30) ATGAGTCA 1 chr10:85878554-85878634 ( 63) ATGAGTCA 1 chr2:61825775-61825855 ( 70) ATGAGTCA 1 chr6:14600678-14600758 ( 3) CTGACTCA 1 chr6:84686752-84686832 ( 4) CTGACTCA 1 chr7:43849925-43850005 ( 9) CTGACTCA 1 chr8:144627971-144628051 ( 4) CTGACTCA 1 chr19:53168889-53168969 ( 7) CTGACTCA 1 chr11:9921937-9922017 ( 19) CTGACTCA 1 chr16:24759753-24759833 ( 16) GTGAGTCA 1 chr4:73969993-73970073 ( 53) GTGACTCA 1 chr1:1446509-1446589 ( 71) GTGACTCA 1 chr17:47466849-47466929 ( 43) GTGACTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTGAGTCA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.95252 E= 5.6e-010 69 86 -69 -1145 -1145 -1145 -1145 191 -1145 -1145 212 -1145 191 -1145 -1145 -1145 -1145 44 156 -1145 -1145 -1145 -1145 191 -1145 208 -1145 -1145 191 -1145 -1145 -1145 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTGAGTCA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 5.6e-010 0.428571 0.428571 0.142857 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.321429 0.678571 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MTGAGTCA MEME-3 regular expression -------------------------------------------------------------------------------- [AC]TGA[GC]TCA -------------------------------------------------------------------------------- Time 11.63 secs. ******************************************************************************** ******************************************************************************** MOTIF RRCNGTTA MEME-4 width = 8 sites = 66 llr = 474 E-value = 9.6e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif RRCNGTTA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 55:2:::6 pos.-specific C :1a4:::: probability G 54:2a::3 matrix T :::2:aa2 bits 2.1 * * 1.9 * *** 1.7 * *** 1.5 * *** Relative 1.3 * *** Entropy 1.1 * * *** (10.4 bits) 0.8 * * *** 0.6 *** **** 0.4 *** **** 0.2 *** **** 0.0 -------- Multilevel GACCGTTA consensus AG A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRCNGTTA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr21:38751093-38751173 11 1.30e-05 ATAAGACCAT GGCCGTTA ACAGTTAGAG chr3:100120417-100120497 9 1.30e-05 ACCTCTGT GGCCGTTA GCACGGTTTT chr11:64808431-64808511 57 1.30e-05 GCTCGATGGG GGCCGTTA GCCGCCCTAG chr4:86561271-86561351 34 1.30e-05 tacactatga ggccgtta gccacctgcc chr13:24440748-24440828 15 1.30e-05 ctcccttagt ggccgtta catctggcag chr20:35490434-35490514 52 2.80e-05 CAGGCTGTGG GACCGTTA GGCTGGGCGG chr3:138313081-138313161 40 2.80e-05 CCGCCTCCGC GACCGTTA CCACCGCCGG chr3:94657034-94657114 11 2.80e-05 GAGCCTCGCC GACCGTTA GTCCTCACAG chr2:171163067-171163147 22 2.80e-05 ACTGTTGACT GACCGTTA GTCTGACTTG chr3:48882802-48882882 29 2.80e-05 CCACAGCAAT GACCGTTA ATTAACTCCT chr20:54967240-54967320 18 4.30e-05 CCAAGAGCTC AGCCGTTA GAATTCAAAG chr11:18707725-18707805 27 4.30e-05 cctactttgg agccgtta gattctagat chr17:33916711-33916791 37 4.30e-05 TCCTCAGAAC AGCCGTTA CTTGTCTGGT chr3:14264657-14264737 20 6.03e-05 agtttgtccc aaccgtta tctattgccc chr11:38242979-38243059 57 7.16e-05 tggcaggaag ggccgttg tgacaggagg chr11:125757491-12575757 38 9.74e-05 CTCAGCGGTC GGCGGTTA ACCGCAGGCT chr5:138855086-138855166 57 9.74e-05 TTTAAAAAAG GACCGTTG AGAAAGGGGT chr11:94964523-94964603 66 9.74e-05 GAAGGGAGGT GGCGGTTA GCTAAGT chr12:120315302-12031538 34 9.74e-05 GTTTGAAATT GGCGGTTA CGCAGGATGC chrX:69509905-69509985 25 9.74e-05 TTTGAAACTT GGCGGTTA AAGCTCCGGC chr9:127516679-127516759 35 9.74e-05 AGTCAGAACT GACCGTTG GAATACCAGC chr3:47764530-47764610 40 1.41e-04 tagataagga gacggtta cagctatata chr5:159848844-159848924 39 1.41e-04 AGATGAATGC GGCTGTTA AGACCTGCGT chr12:42820006-42820086 44 1.41e-04 ATTGTCTCAT GGCAGTTA GGAATCATAA chr3:156837368-156837448 8 1.88e-04 gacagct gactgtta ccgctcatgt chr2:12654995-12655075 47 1.88e-04 AAAGGAAACT GACAGTTA AAAATGAAGG chr13:53088263-53088343 29 2.18e-04 cagccacccc aaccgttg gcaaccacag chr2:144910610-144910690 47 2.68e-04 AGAGAGGGCT AGCAGTTA GCGTTTGGAA chr3:132255050-132255130 14 2.68e-04 Taaaataccc agcagtta gctggatgat chr10:96152025-96152105 28 2.68e-04 ccctgaccta aacggtta tgttatctat chr19:14492896-14492976 69 2.68e-04 AGGTGACTGT AACGGTTA TCAG chr12:9519958-9520038 56 2.68e-04 TGTGGCAAGC AGCAGTTA TTTGAGCTGA chr7:30391041-30391121 14 2.68e-04 AAATTGTGTA AGCAGTTA ATTGTAAGGT chr15:59030672-59030752 39 3.20e-04 AGCTACACCT AACAGTTA CAAGTTAAAG chr5:79487993-79488073 38 3.20e-04 AGTTGTGGCT AACTGTTA ACTGCCTAAG chr2:196217464-196217544 12 3.20e-04 TTTTCCCTTC AACTGTTA ACGCATCCAA chr2:225450440-225450520 45 3.46e-04 AGCTCGGAGC GGCGGTTG GGAGGGTCCT chr12:100967435-10096751 46 3.46e-04 cggcagcggc ggcggTTG GTCAGGGGCG chrX:62571344-62571424 49 3.46e-04 TCCGCCCCTC GACCGTTT CCCTCAAACG chr5:52541972-52542052 20 3.84e-04 TTTTTTTCTG GGCAGTTG AAACTATCTT chr4:164414254-164414334 14 3.84e-04 gttgctgcct ggcagttg caagcccttc chr11:12846073-12846153 66 4.28e-04 TAAGATAAGA GACTGTTG TGTGAAA chr1:109761305-109761385 13 4.28e-04 ACACTTCTGT GACTGTTG CCTCTTCCTG chr6:14600678-14600758 33 4.72e-04 gctgtgtcat aaccgttt ttcccgccaa chr13:111156015-11115609 31 4.72e-04 CACGGCTCAG GCCCGTTA GTGTCTGGCT chr7:14030464-14030544 15 4.72e-04 CAGCTGTTCC GCCCGTTA GGAAACGTGC chr15:32907551-32907631 6 4.72e-04 GGTTT GCCCGTTA CACCCCTTCG chr9:15293811-15293891 35 5.16e-04 aaatgtagcc aacggttg gaaccgtgtt chr7:16095366-16095446 49 5.16e-04 gttacagctc agcagttg ctttatttga chr4:111232143-111232223 72 5.16e-04 gccaagactt agctgttg t chr7:86866431-86866511 34 5.16e-04 gaaatcaacg agcagttg acaacaatac chr20:43672760-43672840 45 5.49e-04 TCAAATCATG AACTGTTG AGGTTAACGG chr1:59972844-59972924 47 5.49e-04 acagagtttg aacagttg gccgcctgtg chr4:110834024-110834104 25 5.49e-04 CAAAAAGAGA AACTGTTG GGAGAGGAAT chr5:156570016-156570096 4 5.77e-04 TCC ACCCGTTA CTGACTTTTA chr4:129733834-129733914 22 5.77e-04 TGCCTTCGAA ACCCGTTA GGAATGCGTC chr4:38907819-38907899 67 5.77e-04 AATAAAAAGT ACCCGTTA CAAGAC chr2:73944194-73944274 53 6.21e-04 gaaccaatcc ggctgttt ctgtggctta chr3:170290823-170290903 13 6.55e-04 GTCGCCACAT GACTGTTT TCTGTAGTGA chr18:70928597-70928677 62 7.45e-04 taaccaatct agctgttt ctgtccctca chr5:157247853-157247933 9 7.45e-04 GCACTCTC AACGGTTT CTTAAACACA chr6:28616602-28616682 36 7.45e-04 GAGCTCACTT AACGGTTT TGTATTTCAA chr8:99553499-99553579 13 7.45e-04 ggtagtttct aacggttt agcaccatcc chr4:178150598-178150678 14 7.45e-04 AGATATTCCC AGCAGTTT ACTTGAGCAA chr3:154966734-154966814 35 8.13e-04 ttaaaaacca aactgttt ctaaaattat chr17:28475572-28475652 33 8.13e-04 aaggaaggga aacagttt aggattggct -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRCNGTTA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr21:38751093-38751173 1.3e-05 10_[+4]_62 chr3:100120417-100120497 1.3e-05 8_[+4]_64 chr11:64808431-64808511 1.3e-05 56_[+4]_16 chr4:86561271-86561351 1.3e-05 33_[+4]_39 chr13:24440748-24440828 1.3e-05 14_[+4]_58 chr20:35490434-35490514 2.8e-05 51_[+4]_21 chr3:138313081-138313161 2.8e-05 39_[+4]_33 chr3:94657034-94657114 2.8e-05 10_[+4]_62 chr2:171163067-171163147 2.8e-05 21_[+4]_51 chr3:48882802-48882882 2.8e-05 28_[+4]_44 chr20:54967240-54967320 4.3e-05 17_[+4]_55 chr11:18707725-18707805 4.3e-05 26_[+4]_46 chr17:33916711-33916791 4.3e-05 36_[+4]_36 chr3:14264657-14264737 6e-05 19_[+4]_53 chr11:38242979-38243059 7.2e-05 56_[+4]_16 chr11:125757491-12575757 9.7e-05 37_[+4]_35 chr5:138855086-138855166 9.7e-05 56_[+4]_16 chr11:94964523-94964603 9.7e-05 65_[+4]_7 chr12:120315302-12031538 9.7e-05 33_[+4]_39 chrX:69509905-69509985 9.7e-05 24_[+4]_48 chr9:127516679-127516759 9.7e-05 34_[+4]_38 chr3:47764530-47764610 0.00014 39_[+4]_33 chr5:159848844-159848924 0.00014 38_[+4]_34 chr12:42820006-42820086 0.00014 43_[+4]_29 chr3:156837368-156837448 0.00019 7_[+4]_65 chr2:12654995-12655075 0.00019 46_[+4]_26 chr13:53088263-53088343 0.00022 28_[+4]_44 chr2:144910610-144910690 0.00027 46_[+4]_26 chr3:132255050-132255130 0.00027 13_[+4]_59 chr10:96152025-96152105 0.00027 27_[+4]_45 chr19:14492896-14492976 0.00027 68_[+4]_4 chr12:9519958-9520038 0.00027 55_[+4]_17 chr7:30391041-30391121 0.00027 13_[+4]_59 chr15:59030672-59030752 0.00032 38_[+4]_34 chr5:79487993-79488073 0.00032 37_[+4]_35 chr2:196217464-196217544 0.00032 11_[+4]_61 chr2:225450440-225450520 0.00035 44_[+4]_28 chr12:100967435-10096751 0.00035 45_[+4]_27 chrX:62571344-62571424 0.00035 48_[+4]_24 chr5:52541972-52542052 0.00038 19_[+4]_53 chr4:164414254-164414334 0.00038 13_[+4]_59 chr11:12846073-12846153 0.00043 65_[+4]_7 chr1:109761305-109761385 0.00043 12_[+4]_60 chr6:14600678-14600758 0.00047 32_[+4]_40 chr13:111156015-11115609 0.00047 30_[+4]_42 chr7:14030464-14030544 0.00047 14_[+4]_58 chr15:32907551-32907631 0.00047 5_[+4]_67 chr9:15293811-15293891 0.00052 34_[+4]_38 chr7:16095366-16095446 0.00052 48_[+4]_24 chr4:111232143-111232223 0.00052 71_[+4]_1 chr7:86866431-86866511 0.00052 33_[+4]_39 chr20:43672760-43672840 0.00055 44_[+4]_28 chr1:59972844-59972924 0.00055 46_[+4]_26 chr4:110834024-110834104 0.00055 24_[+4]_48 chr5:156570016-156570096 0.00058 3_[+4]_69 chr4:129733834-129733914 0.00058 21_[+4]_51 chr4:38907819-38907899 0.00058 66_[+4]_6 chr2:73944194-73944274 0.00062 52_[+4]_20 chr3:170290823-170290903 0.00065 12_[+4]_60 chr18:70928597-70928677 0.00074 61_[+4]_11 chr5:157247853-157247933 0.00074 8_[+4]_64 chr6:28616602-28616682 0.00074 35_[+4]_37 chr8:99553499-99553579 0.00074 12_[+4]_60 chr4:178150598-178150678 0.00074 13_[+4]_59 chr3:154966734-154966814 0.00081 34_[+4]_38 chr17:28475572-28475652 0.00081 32_[+4]_40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRCNGTTA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RRCNGTTA width=8 seqs=66 chr21:38751093-38751173 ( 11) GGCCGTTA 1 chr3:100120417-100120497 ( 9) GGCCGTTA 1 chr11:64808431-64808511 ( 57) GGCCGTTA 1 chr4:86561271-86561351 ( 34) GGCCGTTA 1 chr13:24440748-24440828 ( 15) GGCCGTTA 1 chr20:35490434-35490514 ( 52) GACCGTTA 1 chr3:138313081-138313161 ( 40) GACCGTTA 1 chr3:94657034-94657114 ( 11) GACCGTTA 1 chr2:171163067-171163147 ( 22) GACCGTTA 1 chr3:48882802-48882882 ( 29) GACCGTTA 1 chr20:54967240-54967320 ( 18) AGCCGTTA 1 chr11:18707725-18707805 ( 27) AGCCGTTA 1 chr17:33916711-33916791 ( 37) AGCCGTTA 1 chr3:14264657-14264737 ( 20) AACCGTTA 1 chr11:38242979-38243059 ( 57) GGCCGTTG 1 chr11:125757491-12575757 ( 38) GGCGGTTA 1 chr5:138855086-138855166 ( 57) GACCGTTG 1 chr11:94964523-94964603 ( 66) GGCGGTTA 1 chr12:120315302-12031538 ( 34) GGCGGTTA 1 chrX:69509905-69509985 ( 25) GGCGGTTA 1 chr9:127516679-127516759 ( 35) GACCGTTG 1 chr3:47764530-47764610 ( 40) GACGGTTA 1 chr5:159848844-159848924 ( 39) GGCTGTTA 1 chr12:42820006-42820086 ( 44) GGCAGTTA 1 chr3:156837368-156837448 ( 8) GACTGTTA 1 chr2:12654995-12655075 ( 47) GACAGTTA 1 chr13:53088263-53088343 ( 29) AACCGTTG 1 chr2:144910610-144910690 ( 47) AGCAGTTA 1 chr3:132255050-132255130 ( 14) AGCAGTTA 1 chr10:96152025-96152105 ( 28) AACGGTTA 1 chr19:14492896-14492976 ( 69) AACGGTTA 1 chr12:9519958-9520038 ( 56) AGCAGTTA 1 chr7:30391041-30391121 ( 14) AGCAGTTA 1 chr15:59030672-59030752 ( 39) AACAGTTA 1 chr5:79487993-79488073 ( 38) AACTGTTA 1 chr2:196217464-196217544 ( 12) AACTGTTA 1 chr2:225450440-225450520 ( 45) GGCGGTTG 1 chr12:100967435-10096751 ( 46) GGCGGTTG 1 chrX:62571344-62571424 ( 49) GACCGTTT 1 chr5:52541972-52542052 ( 20) GGCAGTTG 1 chr4:164414254-164414334 ( 14) GGCAGTTG 1 chr11:12846073-12846153 ( 66) GACTGTTG 1 chr1:109761305-109761385 ( 13) GACTGTTG 1 chr6:14600678-14600758 ( 33) AACCGTTT 1 chr13:111156015-11115609 ( 31) GCCCGTTA 1 chr7:14030464-14030544 ( 15) GCCCGTTA 1 chr15:32907551-32907631 ( 6) GCCCGTTA 1 chr9:15293811-15293891 ( 35) AACGGTTG 1 chr7:16095366-16095446 ( 49) AGCAGTTG 1 chr4:111232143-111232223 ( 72) AGCTGTTG 1 chr7:86866431-86866511 ( 34) AGCAGTTG 1 chr20:43672760-43672840 ( 45) AACTGTTG 1 chr1:59972844-59972924 ( 47) AACAGTTG 1 chr4:110834024-110834104 ( 25) AACTGTTG 1 chr5:156570016-156570096 ( 4) ACCCGTTA 1 chr4:129733834-129733914 ( 22) ACCCGTTA 1 chr4:38907819-38907899 ( 67) ACCCGTTA 1 chr2:73944194-73944274 ( 53) GGCTGTTT 1 chr3:170290823-170290903 ( 13) GACTGTTT 1 chr18:70928597-70928677 ( 62) AGCTGTTT 1 chr5:157247853-157247933 ( 9) AACGGTTT 1 chr6:28616602-28616682 ( 36) AACGGTTT 1 chr8:99553499-99553579 ( 13) AACGGTTT 1 chr4:178150598-178150678 ( 14) AGCAGTTT 1 chr3:154966734-154966814 ( 35) AACTGTTT 1 chr17:28475572-28475652 ( 33) AACAGTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRCNGTTA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.87455 E= 9.6e-003 86 -1269 116 -1269 82 -138 93 -1269 -1269 208 -1269 -1269 -33 73 -23 -43 -1269 -1269 212 -1269 -1269 -1269 -1269 191 -1269 -1269 -1269 191 111 -1269 16 -67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRCNGTTA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 66 E= 9.6e-003 0.484848 0.000000 0.515152 0.000000 0.469697 0.090909 0.439394 0.000000 0.000000 1.000000 0.000000 0.000000 0.212121 0.393939 0.196970 0.196970 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.575758 0.000000 0.257576 0.166667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRCNGTTA MEME-4 regular expression -------------------------------------------------------------------------------- [GA][AG]C[CA]GTT[AG] -------------------------------------------------------------------------------- Time 14.94 secs. ******************************************************************************** ******************************************************************************** MOTIF CCAAACCA MEME-5 width = 8 sites = 16 llr = 157 E-value = 1.8e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCAAACCA MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::9a9::a pos.-specific C 9a1:1a9: probability G :::::::: matrix T 1:::::1: bits 2.1 * * 1.9 * * * * 1.7 * * * * 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (14.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCAAACCA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAAACCA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:14600678-14600758 47 1.58e-05 gtttttcccg ccaaacca ctcaccccgt chr6:84686752-84686832 41 1.58e-05 atttttcccg ccaaacca ctcaccccca chr7:43849925-43850005 53 1.58e-05 atttttcccg ccaaacca ctcaccctgt chr8:144627971-144628051 48 1.58e-05 atttttcccg ccaaacca ctcaccccat chr8:99890709-99890789 54 1.58e-05 atttttcccg ccaaacca ctcaccccgt chr19:53168889-53168969 35 1.58e-05 atttttccca ccaaacca ctcaccccat chr3:183072396-183072476 49 1.58e-05 cctttctgga ccaaacca atgtacatct chrX:122983949-122984029 35 1.58e-05 ttttttccct ccaaacca ctcaccccgt chr3:171589607-171589687 49 1.58e-05 CCAACCCAAT CCAAACCA GACAAAACTA chr11:9921937-9922017 56 1.58e-05 atttttccca ccaaacca ctcaccctgt chr3:154966734-154966814 52 5.13e-05 tctaaaatta tcaaacca tcctttgctg chr2:73944194-73944274 8 5.13e-05 ccagtgt tcaaacca tgttcaaata chr14:101782317-10178239 41 5.13e-05 gtctttcccg ccaaacta ctctccccgc chr6:4865438-4865518 63 5.13e-05 tcccttcccg ccaaacta ctcatcccgc chr1:39851384-39851464 14 7.94e-05 GCTATCAGCA CCCAACCA GAGGCTGTAA chr16:20774994-20775074 5 7.94e-05 TAGG CCAACCCA TAACCGCCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAAACCA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:14600678-14600758 1.6e-05 46_[+5]_26 chr6:84686752-84686832 1.6e-05 40_[+5]_32 chr7:43849925-43850005 1.6e-05 52_[+5]_20 chr8:144627971-144628051 1.6e-05 47_[+5]_25 chr8:99890709-99890789 1.6e-05 53_[+5]_19 chr19:53168889-53168969 1.6e-05 34_[+5]_38 chr3:183072396-183072476 1.6e-05 48_[+5]_24 chrX:122983949-122984029 1.6e-05 34_[+5]_38 chr3:171589607-171589687 1.6e-05 48_[+5]_24 chr11:9921937-9922017 1.6e-05 55_[+5]_17 chr3:154966734-154966814 5.1e-05 51_[+5]_21 chr2:73944194-73944274 5.1e-05 7_[+5]_65 chr14:101782317-10178239 5.1e-05 40_[+5]_32 chr6:4865438-4865518 5.1e-05 62_[+5]_10 chr1:39851384-39851464 7.9e-05 13_[+5]_59 chr16:20774994-20775074 7.9e-05 4_[+5]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAAACCA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCAAACCA width=8 seqs=16 chr6:14600678-14600758 ( 47) CCAAACCA 1 chr6:84686752-84686832 ( 41) CCAAACCA 1 chr7:43849925-43850005 ( 53) CCAAACCA 1 chr8:144627971-144628051 ( 48) CCAAACCA 1 chr8:99890709-99890789 ( 54) CCAAACCA 1 chr19:53168889-53168969 ( 35) CCAAACCA 1 chr3:183072396-183072476 ( 49) CCAAACCA 1 chrX:122983949-122984029 ( 35) CCAAACCA 1 chr3:171589607-171589687 ( 49) CCAAACCA 1 chr11:9921937-9922017 ( 56) CCAAACCA 1 chr3:154966734-154966814 ( 52) TCAAACCA 1 chr2:73944194-73944274 ( 8) TCAAACCA 1 chr14:101782317-10178239 ( 41) CCAAACTA 1 chr6:4865438-4865518 ( 63) CCAAACTA 1 chr1:39851384-39851464 ( 14) CCCAACCA 1 chr16:20774994-20775074 ( 5) CCAACCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAAACCA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1543 E= 1.8e+000 -1064 188 -1064 -109 -1064 208 -1064 -1064 181 -192 -1064 -1064 191 -1064 -1064 -1064 181 -192 -1064 -1064 -1064 208 -1064 -1064 -1064 188 -1064 -109 191 -1064 -1064 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAAACCA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 1.8e+000 0.000000 0.875000 0.000000 0.125000 0.000000 1.000000 0.000000 0.000000 0.937500 0.062500 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.937500 0.062500 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.875000 0.000000 0.125000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAAACCA MEME-5 regular expression -------------------------------------------------------------------------------- CCAAACCA -------------------------------------------------------------------------------- Time 18.14 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:72476258-72476338 9.54e-01 80 chr17:33916711-33916791 3.09e-02 36_[+4(4.30e-05)]_36 chr5:36878931-36879011 1.10e-01 80 chr10:33240253-33240333 5.18e-02 80 chr11:9921937-9922017 3.11e-03 18_[+3(4.72e-05)]_29_[+5(1.58e-05)]_\ 17 chr3:48882802-48882882 5.02e-03 28_[+4(2.80e-05)]_44 chr2:231263565-231263645 1.74e-02 11_[+2(4.00e-05)]_61 chr4:164414254-164414334 2.53e-03 80 chrX:89713190-89713270 1.08e-01 80 chr15:67417952-67418032 2.48e-03 29_[+1(6.64e-05)]_33_[+3(1.50e-05)]_\ 2 chr7:30391041-30391121 2.86e-01 80 chr12:9519958-9520038 2.29e-01 80 chr17:47466849-47466929 1.83e-02 42_[+3(9.42e-05)]_30 chr15:32907551-32907631 8.57e-02 80 chr16:75795133-75795213 6.49e-02 80 chr2:189152862-189152942 3.93e-02 80 chr1:207865311-207865391 2.98e-01 80 chr7:25013751-25013831 2.70e-01 80 chr16:20774994-20775074 9.86e-03 4_[+5(7.94e-05)]_29_[+1(4.47e-05)]_\ 31 chr4:178150598-178150678 3.37e-02 80 chr3:194241567-194241647 5.30e-03 40_[+2(2.54e-05)]_32 chr2:55717862-55717942 6.51e-03 37_[+3(1.50e-05)]_35 chr2:171163067-171163147 2.08e-03 21_[+4(2.80e-05)]_14_[+1(4.47e-05)]_\ 29 chr20:35464160-35464240 3.48e-03 5_[+2(4.00e-05)]_67 chr12:131732585-13173266 9.89e-03 80 chr2:61825775-61825855 9.20e-04 27_[+2(8.32e-05)]_34_[+3(3.18e-05)]_\ 3 chr4:38907819-38907899 2.99e-02 80 chr8:99553499-99553579 1.48e-02 80 chr9:127516679-127516759 3.73e-02 34_[+4(9.74e-05)]_38 chr9:35665154-35665234 4.26e-02 80 chr15:49482892-49482972 9.07e-02 80 chr7:112366241-112366321 1.38e-01 80 chr10:15885830-15885910 5.45e-01 80 chr3:94657034-94657114 1.22e-01 10_[+4(2.80e-05)]_62 chr1:161735223-161735303 1.03e-01 80 chr12:14518577-14518657 3.54e-01 80 chr3:171589607-171589687 5.82e-03 38_[+5(7.94e-05)]_2_[+5(1.58e-05)]_\ 24 chr7:14030464-14030544 1.21e-01 80 chr5:175612223-175612303 2.73e-01 80 chr10:85878554-85878634 2.01e-03 20_[+2(2.54e-05)]_34_[+3(3.18e-05)]_\ 10 chr6:139811766-139811846 6.10e-02 80 chr9:100827928-100828008 2.41e-03 29_[+2(2.54e-05)]_43 chr12:42820006-42820086 1.70e-01 80 chr11:78127560-78127640 7.35e-01 80 chrX:122983949-122984029 1.40e-02 34_[+5(1.58e-05)]_38 chr1:172569220-172569300 2.43e-02 47_[+1(2.23e-05)]_25 chr1:32908181-32908261 2.91e-02 29_[+3(3.18e-05)]_27_[+3(3.18e-05)]_\ 8 chr15:83408014-83408094 3.44e-02 80 chr15:30918204-30918284 1.03e-02 72_[+2(6.89e-05)] chr6:28616602-28616682 4.07e-03 47_[+1(2.23e-05)]_25 chr1:1446509-1446589 4.70e-03 30_[+2(2.54e-05)]_32_[+3(9.42e-05)]_\ 2 chr5:72860594-72860674 3.12e-02 70_[+2(9.96e-05)]_2 chr4:129733834-129733914 3.63e-02 80 chr2:122533017-122533097 5.65e-02 80 chr11:116910922-11691100 8.59e-02 80 chr3:177076320-177076400 1.24e-02 34_[+1(4.47e-05)]_38 chr17:28019413-28019493 3.09e-02 80 chr7:86866431-86866511 3.06e-01 80 chr7:25188544-25188624 1.40e-01 80 chr19:19977546-19977626 8.14e-02 80 chrX:62571344-62571424 1.73e-01 80 chr10:22519463-22519543 5.44e-01 80 chr2:196217464-196217544 1.44e-02 70_[+1(2.23e-05)]_2 chr2:114566786-114566866 2.71e-02 1_[+1(4.47e-05)]_71 chr7:32767609-32767689 5.76e-01 80 chr11:111475250-11147533 8.16e-02 80 chr5:79487993-79488073 9.36e-03 67_[+1(4.47e-05)]_5 chr15:83847772-83847852 1.73e-01 80 chr11:38242979-38243059 1.15e-02 56_[+4(7.16e-05)]_16 chr5:134241541-134241621 5.47e-02 8_[+1(6.64e-05)]_64 chr2:172370388-172370468 2.26e-01 80 chr2:54787650-54787730 5.52e-01 80 chr3:14264657-14264737 1.74e-03 19_[+4(6.03e-05)]_53 chr14:31028394-31028474 8.88e-01 80 chr3:183072396-183072476 3.84e-02 48_[+5(1.58e-05)]_24 chr19:53168889-53168969 1.33e-04 6_[+3(4.72e-05)]_20_[+5(1.58e-05)]_\ 38 chr4:110834024-110834104 2.53e-03 11_[+1(4.47e-05)]_61 chr2:236302973-236303053 5.90e-03 80 chr4:84206369-84206449 1.43e-02 59_[+2(5.43e-05)]_13 chr13:24440748-24440828 3.05e-02 14_[+4(1.30e-05)]_58 chr14:50359150-50359230 4.70e-02 80 chr14:31713260-31713340 4.92e-03 27_[+2(2.54e-05)]_45 chr13:111156015-11115609 2.69e-03 14_[+3(1.50e-05)]_58 chr15:80373892-80373972 5.22e-01 80 chr12:109128268-10912834 1.66e-02 80 chr9:140210743-140210823 9.98e-01 80 chr17:49511921-49512001 1.49e-03 5_[+2(8.32e-05)]_28_[+3(3.18e-05)]_\ 31 chr5:157247853-157247933 2.74e-01 80 chr8:99890709-99890789 6.43e-02 53_[+5(1.58e-05)]_19 chr15:58961520-58961600 8.21e-02 80 chrX:150151571-150151651 4.42e-02 26_[+2(6.89e-05)]_46 chr3:49333055-49333135 1.92e-02 80 chr6:4777574-4777654 2.85e-01 80 chr11:111895302-11189538 6.26e-02 80 chr13:66650781-66650861 5.50e-01 80 chr3:138313081-138313161 1.08e-02 39_[+4(2.80e-05)]_33 chr1:59972844-59972924 2.56e-02 80 chr12:100967435-10096751 1.64e-01 80 chr1:61543126-61543206 8.06e-02 80 chr5:147953942-147954022 1.09e-01 80 chr3:170290823-170290903 3.30e-03 49_[+1(2.23e-05)]_23 chr16:24759753-24759833 8.80e-03 15_[+3(7.91e-05)]_57 chr2:63147416-63147496 1.47e-01 80 chr8:144627971-144628051 5.00e-04 3_[+3(4.72e-05)]_36_[+5(1.58e-05)]_\ 25 chr4:111232143-111232223 1.63e-03 55_[+2(1.27e-05)]_17 chr5:53590075-53590155 3.64e-03 72_[+5(9.93e-05)] chr17:28475572-28475652 6.02e-03 41_[+2(1.27e-05)]_31 chr7:134832167-134832247 1.39e-01 80 chr7:43849925-43850005 2.78e-03 8_[+3(4.72e-05)]_36_[+5(1.58e-05)]_\ 20 chr4:18022461-18022541 5.82e-01 80 chr1:109761305-109761385 3.96e-01 80 chr7:16095366-16095446 6.33e-02 80 chrX:119376815-119376895 9.06e-01 80 chr6:57085072-57085152 1.07e-01 80 chr13:53088263-53088343 2.24e-03 51_[+3(3.18e-05)]_21 chr9:37239687-37239767 2.95e-02 80 chr19:14492896-14492976 6.33e-03 80 chr10:129924681-12992476 6.92e-02 80 chr2:190465980-190466060 2.60e-03 22_[+3(3.18e-05)]_50 chr11:91524414-91524494 5.17e-01 80 chr1:169452922-169453002 3.94e-02 44_[+1(2.23e-05)]_28 chr2:32661426-32661506 1.92e-01 80 chr1:206138214-206138294 2.14e-01 80 chr20:35490434-35490514 5.11e-02 51_[+4(2.80e-05)]_21 chr4:79632863-79632943 1.34e-02 80 chr7:133769705-133769785 8.51e-02 80 chr20:43672760-43672840 5.81e-03 66_[+1(2.23e-05)]_6 chr10:51515538-51515618 1.49e-01 80 chr2:225450440-225450520 6.21e-02 24_[+2(9.96e-05)]_48 chr4:86561271-86561351 4.81e-02 33_[+4(1.30e-05)]_39 chr11:64808431-64808511 3.46e-02 56_[+4(1.30e-05)]_16 chr8:97290891-97290971 2.93e-01 80 chr6:4865438-4865518 1.16e-02 62_[+5(5.13e-05)]_10 chr11:18707725-18707805 2.05e-02 26_[+4(4.30e-05)]_46 chr4:75585158-75585238 2.94e-03 1_[+3(4.72e-05)]_58_[+3(3.18e-05)]_\ 5 chrX:124353877-124353957 1.91e-01 80 chr1:207693122-207693202 1.94e-02 80 chrX:153977090-153977170 3.32e-01 80 chr4:56369495-56369575 5.28e-03 18_[+3(3.18e-05)]_54 chr2:86922374-86922454 2.67e-02 7_[+3(1.50e-05)]_46_[+3(4.72e-05)]_\ 11 chr5:52541972-52542052 3.36e-02 80 chr11:59894824-59894904 9.70e-02 59_[+3(3.18e-05)]_13 chr12:6603140-6603220 1.18e-02 55_[+2(1.27e-05)]_17 chr3:101444489-101444569 1.96e-01 71_[+1(6.64e-05)]_1 chr10:96152025-96152105 1.56e-01 80 chr18:43250369-43250449 4.89e-01 80 chr3:100120417-100120497 2.58e-03 8_[+4(1.30e-05)]_64 chr17:39001004-39001084 4.37e-01 80 chr12:46918119-46918199 2.59e-03 2_[+2(4.00e-05)]_27_[+3(3.18e-05)]_\ 35 chr1:231189475-231189555 3.40e-01 80 chrX:69509905-69509985 8.24e-03 24_[+4(9.74e-05)]_48 chr21:37454647-37454727 1.44e-02 80 chr5:54736116-54736196 9.36e-01 80 chr17:56463028-56463108 5.56e-02 80 chr19:42049118-42049198 1.47e-01 80 chr4:73969993-73970073 1.96e-03 17_[+2(9.96e-05)]_27_[+3(9.42e-05)]_\ 20 chr5:156570016-156570096 2.72e-02 80 chr1:51443182-51443262 6.41e-02 39_[+1(2.23e-05)]_33 chr2:11376498-11376578 3.54e-01 80 chr9:126405037-126405117 9.84e-02 80 chr5:159848844-159848924 1.05e-01 80 chr2:201982243-201982323 3.04e-01 80 chr5:73687365-73687445 3.13e-01 46_[+2(9.96e-05)]_26 chr6:13847183-13847263 2.31e-03 58_[+2(1.27e-05)]_14 chr3:33690492-33690572 7.29e-01 80 chr4:1723198-1723278 2.88e-01 80 chr7:24950856-24950936 3.93e-01 80 chr4:187680552-187680632 6.88e-01 80 chr8:125538320-125538400 3.09e-01 80 chr14:54863526-54863606 1.44e-01 80 chr2:100078704-100078784 1.28e-01 80 chr12:12849076-12849156 4.38e-02 80 chr16:74330141-74330221 9.71e-02 11_[+1(4.47e-05)]_61 chr12:120315302-12031538 4.85e-03 24_[+1(6.64e-05)]_1_[+4(9.74e-05)]_\ 39 chr2:200775820-200775900 8.69e-01 80 chr3:132255050-132255130 4.00e-02 80 chr3:47764530-47764610 1.33e-02 11_[+2(8.32e-05)]_61 chr15:56335953-56336033 3.26e-02 80 chr4:129733170-129733250 1.06e-01 64_[+2(5.43e-05)]_8 chr13:49200295-49200375 6.55e-01 80 chr6:69286019-69286099 4.96e-01 80 chr3:159958665-159958745 2.14e-02 44_[+2(2.54e-05)]_28 chr15:45145732-45145812 3.76e-01 80 chr8:26241556-26241636 3.64e-01 80 chr1:100459152-100459232 7.44e-03 80 chr2:12654995-12655075 5.12e-02 80 chr6:49555154-49555234 4.99e-03 65_[+3(3.18e-05)]_7 chr21:38751093-38751173 3.40e-02 10_[+4(1.30e-05)]_62 chr14:101782317-10178239 4.92e-04 8_[+3(1.50e-05)]_24_[+5(5.13e-05)]_\ 32 chr9:102850645-102850725 3.56e-01 80 chr20:1448485-1448565 6.80e-01 80 chr6:80714403-80714483 9.70e-01 80 chr11:32915772-32915852 7.16e-01 80 chr5:162887605-162887685 1.14e-01 80 chr9:5675179-5675259 2.08e-02 33_[+2(2.54e-05)]_39 chr1:160489935-160490015 9.63e-01 80 chr7:138124156-138124236 2.42e-03 18_[+2(2.54e-05)]_34_[+3(3.18e-05)]_\ 12 chr11:12846073-12846153 1.31e-02 28_[+1(4.47e-05)]_44 chr22:24372371-24372451 6.02e-03 80 chr9:115279207-115279287 2.47e-03 15_[+2(9.96e-05)]_57 chr17:30468459-30468539 1.38e-01 80 chr10:94352864-94352944 3.54e-01 80 chr14:102997529-10299760 2.38e-01 80 chr2:201390846-201390926 8.38e-03 80 chr17:34257754-34257834 3.68e-01 80 chr3:125215668-125215748 5.08e-02 80 chr13:25485409-25485489 1.97e-04 16_[+5(5.13e-05)]_32_[+2(4.00e-05)]_\ 16 chr4:175078561-175078641 1.03e-01 80 chr9:123883927-123884007 4.63e-02 20_[+2(4.00e-05)]_52 chrX:154975597-154975677 2.47e-02 80 chr2:144910610-144910690 1.17e-02 80 chr6:147124956-147125036 3.45e-01 80 chr5:89826142-89826222 2.28e-02 5_[+3(1.50e-05)]_67 chr15:77892423-77892503 5.65e-02 12_[+1(6.64e-05)]_60 chr6:84686752-84686832 4.72e-04 3_[+3(4.72e-05)]_29_[+5(1.58e-05)]_\ 32 chr7:129256578-129256658 3.27e-01 80 chr1:39851384-39851464 5.67e-02 13_[+5(7.94e-05)]_59 chr11:129820137-12982021 7.25e-01 80 chr9:91926085-91926165 4.93e-01 80 chr3:151915844-151915924 6.65e-02 80 chr3:156837368-156837448 3.98e-02 80 chr6:70818225-70818305 3.07e-01 80 chr17:57233048-57233128 7.50e-02 80 chr11:94964523-94964603 1.59e-01 65_[+4(9.74e-05)]_7 chrX:44203540-44203620 1.28e-01 80 chr1:244488488-244488568 1.22e-03 72_[+2(4.00e-05)] chr1:167893927-167894007 1.28e-01 80 chr9:15293811-15293891 2.25e-02 80 chr17:44156210-44156290 2.25e-01 80 chr2:73944194-73944274 1.54e-03 7_[+5(5.13e-05)]_65 chr1:114201828-114201908 4.24e-01 80 chr11:119205077-11920515 1.31e-01 80 chr3:154966734-154966814 2.20e-03 51_[+5(5.13e-05)]_21 chr11:58346313-58346393 5.58e-02 80 chr15:59030672-59030752 1.08e-01 80 chr18:70928597-70928677 1.58e-02 80 chr15:59988684-59988764 9.66e-02 69_[+1(4.47e-05)]_3 chr11:35065684-35065764 5.94e-03 43_[+5(9.93e-05)]_29 chrX:124288963-124289043 4.93e-02 80 chr3:20081179-20081259 2.55e-02 36_[+1(4.47e-05)]_36 chr7:84467112-84467192 1.10e-01 80 chr20:54967240-54967320 7.73e-03 17_[+4(4.30e-05)]_55 chr6:14600678-14600758 3.98e-05 2_[+3(4.72e-05)]_36_[+5(1.58e-05)]_\ 26 chr6:90932630-90932710 2.49e-01 80 chr10:63170297-63170377 5.73e-02 49_[+1(6.64e-05)]_23 chr5:138855086-138855166 7.49e-02 56_[+4(9.74e-05)]_16 chr1:246592004-246592084 1.37e-02 80 chr14:37543672-37543752 9.57e-02 80 chr11:125757491-12575757 3.38e-02 37_[+4(9.74e-05)]_35 chr6:31165810-31165890 2.24e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************