******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/MXI1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr19:6066808-6066888 1.0000 80 chrX:71314912-71314992 1.0000 80 chr20:30085819-30085899 1.0000 80 chr1:21525618-21525698 1.0000 80 chr11:15988803-15988883 1.0000 80 chr17:7117373-7117453 1.0000 80 chr19:11484380-11484460 1.0000 80 chr8:125622634-125622714 1.0000 80 chr3:171912641-171912721 1.0000 80 chr7:100104305-100104385 1.0000 80 chr1:20335054-20335134 1.0000 80 chr19:46981764-46981844 1.0000 80 chr19:55690772-55690852 1.0000 80 chr19:15334362-15334442 1.0000 80 chr9:3525842-3525922 1.0000 80 chr17:35715508-35715588 1.0000 80 chr10:3916055-3916135 1.0000 80 chr1:154178819-154178899 1.0000 80 chr1:156251150-156251230 1.0000 80 chr19:17012777-17012857 1.0000 80 chr11:59436567-59436647 1.0000 80 chr16:759704-759784 1.0000 80 chr19:11616646-11616726 1.0000 80 chr5:149893452-149893532 1.0000 80 chr7:76025576-76025656 1.0000 80 chr15:42352043-42352123 1.0000 80 chr5:176884803-176884883 1.0000 80 chr12:96883277-96883357 1.0000 80 chr19:9945455-9945535 1.0000 80 chr2:232469502-232469582 1.0000 80 chr20:1404644-1404724 1.0000 80 chr1:43613509-43613589 1.0000 80 chr2:74648747-74648827 1.0000 80 chr1:100817826-100817906 1.0000 80 chr17:49205596-49205676 1.0000 80 chr1:245132890-245132970 1.0000 80 chr5:673024-673104 1.0000 80 chr12:13254220-13254300 1.0000 80 chr12:6716682-6716762 1.0000 80 chr17:46102424-46102504 1.0000 80 chr16:58529152-58529232 1.0000 80 chr19:13842469-13842549 1.0000 80 chr20:37101364-37101444 1.0000 80 chrX:133938031-133938111 1.0000 80 chr7:45129089-45129169 1.0000 80 chr7:32945090-32945170 1.0000 80 chr17:49336684-49336764 1.0000 80 chr15:72598746-72598826 1.0000 80 chr20:62258498-62258578 1.0000 80 chr15:90728479-90728559 1.0000 80 chr7:20346900-20346980 1.0000 80 chr20:1305882-1305962 1.0000 80 chr17:74449352-74449432 1.0000 80 chr7:65580544-65580624 1.0000 80 chr3:39222371-39222451 1.0000 80 chr11:125387199-12538727 1.0000 80 chr12:123848092-12384817 1.0000 80 chr22:21983621-21983701 1.0000 80 chr12:49595055-49595135 1.0000 80 chr9:132020854-132020934 1.0000 80 chr14:23356070-23356150 1.0000 80 chr19:50554343-50554423 1.0000 80 chr20:39657119-39657199 1.0000 80 chr17:74137371-74137451 1.0000 80 chr5:81046922-81047002 1.0000 80 chr1:54821761-54821841 1.0000 80 chr16:14728041-14728121 1.0000 80 chr17:19265916-19265996 1.0000 80 chr2:29118229-29118309 1.0000 80 chr19:19145297-19145377 1.0000 80 chr16:30959605-30959685 1.0000 80 chr1:155164695-155164775 1.0000 80 chr19:17580295-17580375 1.0000 80 chr17:4268549-4268629 1.0000 80 chr17:37558898-37558978 1.0000 80 chr10:17514954-17515034 1.0000 80 chr3:195869987-195870067 1.0000 80 chr12:54653399-54653479 1.0000 80 chr3:50563566-50563646 1.0000 80 chr20:30467588-30467668 1.0000 80 chr16:88848328-88848408 1.0000 80 chr1:156076153-156076233 1.0000 80 chr19:55691526-55691606 1.0000 80 chr6:2739734-2739814 1.0000 80 chr21:44847183-44847263 1.0000 80 chr1:155804474-155804554 1.0000 80 chr10:103893411-10389349 1.0000 80 chr1:33546609-33546689 1.0000 80 chr7:150759511-150759591 1.0000 80 chr19:39536851-39536931 1.0000 80 chr18:3013524-3013604 1.0000 80 chr10:76349149-76349229 1.0000 80 chr11:102980101-10298018 1.0000 80 chr6:42013416-42013496 1.0000 80 chr14:106267661-10626774 1.0000 80 chr6:37070357-37070437 1.0000 80 chr11:44564033-44564113 1.0000 80 chr1:193030288-193030368 1.0000 80 chr1:211752930-211753010 1.0000 80 chr15:43803168-43803248 1.0000 80 chr21:43916461-43916541 1.0000 80 chr8:124053826-124053906 1.0000 80 chr21:33765259-33765339 1.0000 80 chr19:18058754-18058834 1.0000 80 chr10:99161018-99161098 1.0000 80 chr7:1577743-1577823 1.0000 80 chr1:156052264-156052344 1.0000 80 chr22:39615553-39615633 1.0000 80 chr7:100087610-100087690 1.0000 80 chr3:38767282-38767362 1.0000 80 chr17:4635084-4635164 1.0000 80 chr16:4784800-4784880 1.0000 80 chr3:167098081-167098161 1.0000 80 chr1:246760751-246760831 1.0000 80 chr11:76758795-76758875 1.0000 80 chr1:26459159-26459239 1.0000 80 chr11:67008700-67008780 1.0000 80 chr6:52285089-52285169 1.0000 80 chr1:151682817-151682897 1.0000 80 chr15:41407826-41407906 1.0000 80 chr11:95149293-95149373 1.0000 80 chr16:67891920-67892000 1.0000 80 chr1:230562411-230562491 1.0000 80 chr11:64684780-64684860 1.0000 80 chr19:59084191-59084271 1.0000 80 chr8:145149727-145149807 1.0000 80 chr16:75590150-75590230 1.0000 80 chr14:105948381-10594846 1.0000 80 chr19:1864242-1864322 1.0000 80 chr6:31036713-31036793 1.0000 80 chr19:5802424-5802504 1.0000 80 chr1:2574707-2574787 1.0000 80 chr19:18228600-18228680 1.0000 80 chr2:241771917-241771997 1.0000 80 chr9:131038315-131038395 1.0000 80 chr19:58874223-58874303 1.0000 80 chr16:89752985-89753065 1.0000 80 chr9:130856720-130856800 1.0000 80 chr16:58160964-58161044 1.0000 80 chr2:202113333-202113413 1.0000 80 chr2:43822848-43822928 1.0000 80 chr10:11916869-11916949 1.0000 80 chr3:47913038-47913118 1.0000 80 chr5:34839192-34839272 1.0000 80 chr12:53689013-53689093 1.0000 80 chr11:12131978-12132058 1.0000 80 chr12:125473585-12547366 1.0000 80 chr11:66049995-66050075 1.0000 80 chr22:31460091-31460171 1.0000 80 chrX:153991783-153991863 1.0000 80 chr11:537397-537477 1.0000 80 chr21:46961693-46961773 1.0000 80 chr7:129142266-129142346 1.0000 80 chr20:8000462-8000542 1.0000 80 chr5:38888351-38888431 1.0000 80 chr12:25348052-25348132 1.0000 80 chr5:132388490-132388570 1.0000 80 chr19:10806565-10806645 1.0000 80 chr11:64902596-64902676 1.0000 80 chr6:144020052-144020132 1.0000 80 chr8:29939952-29940032 1.0000 80 chr7:100273237-100273317 1.0000 80 chr16:58283798-58283878 1.0000 80 chr19:2236286-2236366 1.0000 80 chr17:72667509-72667589 1.0000 80 chr19:52693010-52693090 1.0000 80 chr17:71088828-71088908 1.0000 80 chr12:101673889-10167396 1.0000 80 chr2:172289924-172290004 1.0000 80 chr19:46296100-46296180 1.0000 80 chr1:12719165-12719245 1.0000 80 chr3:49966970-49967050 1.0000 80 chr17:33307428-33307508 1.0000 80 chr8:30515792-30515872 1.0000 80 chr1:33501812-33501892 1.0000 80 chrX:48326752-48326832 1.0000 80 chr16:88923256-88923336 1.0000 80 chr17:41132517-41132597 1.0000 80 chr1:208267801-208267881 1.0000 80 chr4:128554025-128554105 1.0000 80 chr1:207752852-207752932 1.0000 80 chr14:62229086-62229166 1.0000 80 chr7:65541383-65541463 1.0000 80 chr15:85143684-85143764 1.0000 80 chr15:85524104-85524184 1.0000 80 chr5:154317281-154317361 1.0000 80 chr20:61847594-61847674 1.0000 80 chr19:14492968-14493048 1.0000 80 chr3:183967308-183967388 1.0000 80 chr19:6110464-6110544 1.0000 80 chr10:106113446-10611352 1.0000 80 chr20:50157925-50158005 1.0000 80 chr1:32254231-32254311 1.0000 80 chr15:101142446-10114252 1.0000 80 chr5:175815565-175815645 1.0000 80 chr11:47600196-47600276 1.0000 80 chr19:2151823-2151903 1.0000 80 chr16:30538660-30538740 1.0000 80 chr3:42814720-42814800 1.0000 80 chr16:69760382-69760462 1.0000 80 chr8:19627187-19627267 1.0000 80 chr12:100594459-10059453 1.0000 80 chr9:132175989-132176069 1.0000 80 chr8:144513006-144513086 1.0000 80 chr3:129147446-129147526 1.0000 80 chr8:126010733-126010813 1.0000 80 chr6:138276537-138276617 1.0000 80 chr4:57302511-57302591 1.0000 80 chr15:69706475-69706555 1.0000 80 chr1:165567400-165567480 1.0000 80 chr16:89766682-89766762 1.0000 80 chr1:156456862-156456942 1.0000 80 chr17:1953211-1953291 1.0000 80 chr3:195163940-195164020 1.0000 80 chr4:103266658-103266738 1.0000 80 chr19:18268124-18268204 1.0000 80 chr16:3202288-3202368 1.0000 80 chr19:48972160-48972240 1.0000 80 chr3:13493335-13493415 1.0000 80 chr15:42787727-42787807 1.0000 80 chr1:118727845-118727925 1.0000 80 chr22:30988192-30988272 1.0000 80 chr6:43142468-43142548 1.0000 80 chr19:41903234-41903314 1.0000 80 chr7:128432954-128433034 1.0000 80 chr19:54684055-54684135 1.0000 80 chr11:116969269-11696934 1.0000 80 chr7:100450172-100450252 1.0000 80 chr11:65951330-65951410 1.0000 80 chr1:245026238-245026318 1.0000 80 chr1:44495869-44495949 1.0000 80 chr11:71159687-71159767 1.0000 80 chr14:103995528-10399560 1.0000 80 chr17:25853716-25853796 1.0000 80 chr2:183989580-183989660 1.0000 80 chr6:33256924-33257004 1.0000 80 chr8:144025186-144025266 1.0000 80 chr19:47940096-47940176 1.0000 80 chr12:76478527-76478607 1.0000 80 chr16:10837604-10837684 1.0000 80 chr11:122932217-12293229 1.0000 80 chr21:38738995-38739075 1.0000 80 chr19:14117082-14117162 1.0000 80 chr1:166459381-166459461 1.0000 80 chr7:152372584-152372664 1.0000 80 chr16:84178841-84178921 1.0000 80 chr20:43992103-43992183 1.0000 80 chr19:54370838-54370918 1.0000 80 chr6:30813188-30813268 1.0000 80 chr1:226186348-226186428 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_MXI1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/MXI1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.201 C 0.311 G 0.295 T 0.193 Background letter frequencies (from file dataset with add-one prior applied): A 0.201 C 0.311 G 0.295 T 0.193 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CATGGCAA MEME-1 width = 8 sites = 154 llr = 1086 E-value = 1.9e-089 ******************************************************************************** -------------------------------------------------------------------------------- Motif CATGGCAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A :6121199 pos.-specific C a2:::8:: probability G :1189:11 matrix T :18::::: bits 2.4 2.1 1.9 * 1.7 * ** Relative 1.4 * ** Entropy 1.2 * *** ** (10.2 bits) 0.9 * ****** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CATGGCAA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATGGCAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:65951330-65951410 58 1.32e-05 tgggtgttgc catggcaa tggtaaacta chr11:116969269-11696934 40 1.32e-05 TGCCCGGAGC CATGGCAA CCGTGACCTC chr16:89766682-89766762 29 1.32e-05 CTGCCGCTGC CATGGCAA CCGGCGGAGG chr8:144513006-144513086 17 1.32e-05 TGCTTATCCC CATGGCAA CTCAGAGCCC chr8:19627187-19627267 70 1.32e-05 cactcccttc catggcaa caa chr1:207752852-207752932 61 1.32e-05 ttacaaatgc catggcaa cgacctagaa chr16:88923256-88923336 27 1.32e-05 CAACCGCCGC CATGGCAA CCACGGGAGC chr5:34839192-34839272 65 1.32e-05 GTTCCGTTCC CATGGCAA CGGTATTG chr9:130856720-130856800 54 1.32e-05 ACTAGGCTGT CATGGCAA CCTGATCATC chr6:31036713-31036793 33 1.32e-05 AAACAATATC CATGGCAA CAAATGGCCT chr1:151682817-151682897 28 1.32e-05 GAATGCGCAC CATGGCAA CCGCCCACTC chr1:26459159-26459239 47 1.32e-05 cacccctttc catggcaa tgacctgacg chr7:100087610-100087690 18 1.32e-05 CAGCTGTTAC CATGGCAA CCCATCCAGA chr22:39615553-39615633 64 1.32e-05 tgcctctttc catggcaa cgacccatg chr7:1577743-1577823 55 1.32e-05 CCAAGGTCGC CATGGCAA CTATCGGAGG chr18:3013524-3013604 16 1.32e-05 TTCCGGTCCC CATGGCAA CCCTGCGGCA chr19:39536851-39536931 40 1.32e-05 ttacaaatgc catggcaa cgacctggaa chr1:155804474-155804554 37 1.32e-05 ttacaaatgc catggcaa cccccagatg chr10:17514954-17515034 58 1.32e-05 ttacaaatgc catggcaa caacccagga chr19:50554343-50554423 60 1.32e-05 TGTCTTTCTC CATGGCAA CTGTCTACGC chr7:32945090-32945170 42 1.32e-05 tgggtgttgc catggcaa tggtaaactc chr7:45129089-45129169 43 1.32e-05 CTCCTGTCTC CATGGCAA CCAGGGATGG chr5:673024-673104 73 1.32e-05 CCGGTGGAGC CATGGCAA chr17:49205596-49205676 38 1.32e-05 tgggtgttgc catggcaa tggtaaactg chr20:1404644-1404724 55 1.32e-05 cacccctttc catggcaa caactcggca chr7:76025576-76025656 72 1.32e-05 gttacctttc catggcaa c chr19:17012777-17012857 62 1.32e-05 CATCCATCAC CATGGCAA CAAACATCTT chr7:100104305-100104385 55 1.32e-05 tgggtgttgt catggcaa cggtaaactg chr20:30085819-30085899 56 1.32e-05 AGATAGTTGC CATGGCAA CCACTACCCC chr1:32254231-32254311 39 2.22e-05 CCCAGCGTTG CATAGCAA CGTCCCTGGA chr1:208267801-208267881 29 2.22e-05 TCTGTGTTGC CATAGCAA TACATCTTTG chr3:167098081-167098161 55 2.22e-05 CCTCGGTACC CATAGCAA CCAGAAAGCT chr21:43916461-43916541 25 2.22e-05 TGCGTACTGT CATAGCAA CGGGAAGGGC chr11:44564033-44564113 58 2.22e-05 tcgtcatcac catagcaa ccatctccat chr12:54653399-54653479 34 2.22e-05 AGTCCGTTGC CATAGCAA CTGGCAGCAG chr16:759704-759784 14 2.22e-05 CAGCCATCAC CATAGCAA CACGCGTCGC chr10:3916055-3916135 53 2.22e-05 GGTCGGTTTC CATAGCAA CACTCTTGGT chr1:21525618-21525698 65 2.22e-05 tgaaggtaac catagcaa caacgaaa chr14:105948381-10594846 15 3.07e-05 AAGTCATTGT CATGGAAA CCGGGGCGGT chr10:76349149-76349229 46 3.07e-05 CAGCAGTTGC CATGGAAA CTTGGCAGTC chr16:30959605-30959685 39 3.07e-05 TCCTGGTTGC CATGGAAA TAGCAGCCAA chr1:20335054-20335134 44 3.07e-05 atcacgttgc catggaaa ggagcgataa chr6:144020052-144020132 5 4.34e-05 tctc cttggcaa cactgttgcc chr1:156076153-156076233 12 4.34e-05 TGTTTGTTTC CTTGGCAA CAGGGAAAGG chr20:30467588-30467668 26 4.34e-05 TGTCTGTCGC CTTGGCAA CGGGACGCAT chr15:42352043-42352123 30 4.34e-05 AACACCGTCA CTTGGCAA CACAGCCCCC chr1:156456862-156456942 67 7.28e-05 GCAACTGTCG CCTGGCAA CCAGCT chr3:42814720-42814800 23 7.28e-05 CACGCGCTGC CCTGGCAA CCGTCACCAG chr4:128554025-128554105 16 7.28e-05 TCTCCGTCTC CCTGGCAA CGCGACCTGC chr8:30515792-30515872 73 7.28e-05 CTGGGGCCTC CATGACAA chr8:29939952-29940032 28 7.28e-05 AACAGGCAGC CATGACAA CAGCAGGCCA chr7:129142266-129142346 34 7.28e-05 GCCGCTTTGC CCTGGCAA CGGTAACCAC chr11:102980101-10298018 66 7.28e-05 AGCGACTACC CCTGGCAA CCGCGAA chr6:2739734-2739814 28 7.28e-05 ATGGAAACGC CATGACAA CCTGTGTGCA chrX:133938031-133938111 41 7.28e-05 TCAAGGTTGT CATGACAA CTGGTAAAAT chr19:46981764-46981844 27 7.28e-05 CAGTGGTTTC CATGACAA CACGATGTGC chr8:125622634-125622714 35 7.28e-05 GATCTGTTGC CATGACAA CAATCACTTG chr17:7117373-7117453 7 7.28e-05 CTGTTG CCTGGCAA CGCAGCAATC chr2:232469502-232469582 70 8.65e-05 GTTTGGTTCC CAAGGCAA CTG chr19:9945455-9945535 11 8.65e-05 TGCTCATCTC CAAGGCAA CTGCATTGCT chr9:3525842-3525922 57 8.65e-05 GCTTGATTCA CAAGGCAA CGGTTGCTAT chr9:132175989-132176069 52 1.12e-04 ACACCGTTGC CATGGCGA CGTGGCCACG chr1:155164695-155164775 32 1.12e-04 CACGCGTCAC CATGGCGA CGGCTCCGCG chr5:81046922-81047002 15 1.12e-04 GCCCCGTCCC CATGGCGA CCCACGCAGC chr17:74137371-74137451 15 1.12e-04 CTCCTGCTGC CATGGCGA CGCTCCGCCC chr6:43142468-43142548 23 1.20e-04 CACTGTTTGC CTTAGCAA CGCCTCTGCC chr15:101142446-10114252 23 1.20e-04 AATAGTGTCT CTTAGCAA CGGCTTTGAG chr1:100817826-100817906 25 1.20e-04 GCAACAAAGC CTTAGCAA CCGGCTCCTA chr3:13493335-13493415 30 1.48e-04 ttaccattgc cgtggcaa cacccggaag chr2:241771917-241771997 16 1.48e-04 CCCTGGTTGC CGTGGCAA CCTCCTCCCT chr19:59084191-59084271 54 1.48e-04 AGCCTGTCGT CGTGGCAA CGAGTAGTGA chr1:193030288-193030368 22 1.48e-04 ttccatacca cgtggcaa ccagttggca chr7:20346900-20346980 19 1.48e-04 ACCCAGTTCC CATGGTAA CGTGTTTGTT chr15:72598746-72598826 69 1.48e-04 ACCCAGTAAC CATGGTAA CGCC chr12:76478527-76478607 64 1.88e-04 GGCCGGGTTG CCTAGCAA CTGAACCGT chr19:47940096-47940176 56 1.88e-04 TGACTGTCTC CAGGGCAA CGGAGGAACC chr19:54684055-54684135 52 1.88e-04 GAACCGTTTC CCTAGCAA CAGAGGGTGA chr19:48972160-48972240 41 1.88e-04 AGCCCCGCCT CCTAGCAA CAAGACTAAC chr19:18228600-18228680 55 1.88e-04 CGCCCGCGGC CCTAGCAA CGCTCCGCCT chr16:4784800-4784880 55 1.88e-04 GTCTGGTTGC CATAACAA CCGGCAGCCT chr19:15334362-15334442 29 1.88e-04 TTTCCGTCGC CCTAGCAA CCGTCAGCGG chr19:11484380-11484460 54 1.88e-04 ACAAGGTTGC CAGGGCAA CACAGGCGTG chr11:47600196-47600276 51 1.96e-04 CTTGAGTCGT CTTGGAAA CGGTCGCCAG chr17:41132517-41132597 29 2.66e-04 GCGCCGTTGC CATGGCAG CAGGGGGGCG chr22:31460091-31460171 20 2.66e-04 TCTGTAACAA CATGGCAG CTCCCATGAG chr15:90728479-90728559 21 2.66e-04 AGCCTGTTGC CATGGCAG CGCAGGAGGC chr11:15988803-15988883 44 2.66e-04 AGCACAGTAC CTTGACAA CAGAGTTGCA chr17:4635084-4635164 9 3.07e-04 GAATTGTC CAAGGAAA AAACTAACGA chr19:13842469-13842549 23 3.07e-04 CCCCGGTCGC CCTGACAA CAGCGCCGGC chr1:154178819-154178899 43 3.07e-04 TTTCAGTAGT CATAGTAA CATTTACACC chr7:100273237-100273317 57 3.34e-04 TGACGGTTGC CTAGGCAA CCCCACGAAC chr12:125473585-12547366 24 3.34e-04 GCCGGACCAG CAGAGCAA TCCGAAACCC chr20:43992103-43992183 21 3.47e-04 GCGACGTTGC CATGGAGA CAGGCCGCTG chr11:66049995-66050075 18 3.47e-04 GGGCCGTTGC CATGGAGA CGCGGGTGAA chr2:43822848-43822928 67 3.47e-04 GTGCTGTCTC CATGGAGA CCTTAG chr15:43803168-43803248 60 3.47e-04 ACGGCGTTGC CATGGAGA CAACTCCGGG chr19:17580295-17580375 65 3.47e-04 GCTTGGTTGT CATGGAGA CAGCGGAC chr20:50157925-50158005 2 4.02e-04 C CAAGACAA CCTGCTAACC chr19:10806565-10806645 53 4.02e-04 TTCCTGGTCT CCAGGCAA CGCGTACGGC chr1:2574707-2574787 28 4.02e-04 GTCCCCGTCT CCAGGCAA CCATTTCGCG chr12:96883277-96883357 62 4.02e-04 GAGACCGTCG CCAGGCAA CCGCGTGTAC chr3:171912641-171912721 55 4.02e-04 ATCAGGTTGC CTTGGCGA AGTAACGGCT chr16:89752985-89753065 23 4.91e-04 GGGAGCGTCT CTTGGTAA CCGTTGCTAA chr6:42013416-42013496 4 4.91e-04 ACC CCTAGAAA GGGGCAGGCC chr21:44847183-44847263 67 4.91e-04 AGGCCGTTGC CCTGGCGA CCGCGG chr17:19265916-19265996 35 4.91e-04 CCGGCGTTGC CCTAGAAA CAGACGGCGT chr5:176884803-176884883 63 4.91e-04 CAGTGGTTGC CAGGGAAA CAAGGATGCC chr5:149893452-149893532 54 4.91e-04 ATGGCGTCTC CATGACGA CCAGAGCATC chr6:52285089-52285169 63 5.30e-04 TGCTTGTCGC CTGGGCAA CCGGAGAGGA chr2:74648747-74648827 10 5.30e-04 AACAGTCGC CTGGGCAA CCACGGGCTC chr19:6066808-6066888 54 5.30e-04 GAGCCTGTTG CTGGGCAA CCGGGAGAAT chr1:12719165-12719245 54 5.73e-04 GACCTGTTGT CATGGGAa cagaacccag chr16:67891920-67892000 11 5.73e-04 ggccaggtac catgggaa cagggatgac chr1:156251150-156251230 44 5.73e-04 CACTCGGCAG CATGATAA GGCACACGTG chr19:54370838-54370918 63 6.89e-04 GTTTTGTCAC CACGGCAA CCGTGACCTC chr1:245026238-245026318 23 6.89e-04 TCGAGAAAGC CAAAGAAA AACTGCGCGG chr19:46296100-46296180 15 6.89e-04 GGGTCGTCGC CCGGGCAA CGCCTCTTCG chr16:58283798-58283878 20 6.89e-04 GTCCGGTCGC CCGGGCAA CGCGCCACCG chr16:58160964-58161044 9 6.89e-04 CAAGTAAC CATGCCAA TCGATTTAAC chr16:75590150-75590230 32 6.89e-04 CCTCGGTCTC CACGGCAA CCGACGGCTC chr8:145149727-145149807 23 6.89e-04 GTGGCGCTGT CACGGCAA CAGAGAGACG chr11:125387199-12538727 20 6.89e-04 GCCAGGTTGC CATGCCAA TAAGGTTCCC chr16:58529152-58529232 58 6.89e-04 CAGCTGTTGC CAGGACAA CCCTGTCCTC chr12:6716682-6716762 22 6.89e-04 CCCAGGTCTC CCGGGCAA CCCCCGCCCC chr19:55690772-55690852 46 6.89e-04 AGCTGGTTGC CCGGGCAA CGGGTTGTTG chr19:14492968-14493048 22 6.98e-04 AGCTCGTTGC CTAAGCAA CGGGGCAACA chr12:49595055-49595135 8 6.98e-04 CATGTTA CTAAGCAA CGTATTATAC chr22:30988192-30988272 62 7.54e-04 ATTGCGTTGT CAAGGTAA CGGTTGCTAA chr7:128432954-128433034 57 8.26e-04 ACCCATGTGA CTTGGCAG TTGCTGCCAA chr14:23356070-23356150 60 8.26e-04 CCGCGGTCGC CATGGCCA CTGCGGTCGC chr16:3202288-3202368 38 8.84e-04 AAACACCCAA CGTGGCGA TCCTGAGATT chr10:99161018-99161098 21 8.84e-04 CTTCCAGGGA CGTAGAAA CACGCTCAGA chr16:88848328-88848408 29 8.84e-04 CACGAGGCAC CCTGAAAA GCAGAAGCCA chr20:37101364-37101444 40 8.84e-04 GGTTCAGCCC CGTAGAAA GCTCTGATTA chr11:59436567-59436647 58 8.84e-04 AAGGAGGTCC CGTGGCGA GAGACTGCGC chr19:41903234-41903314 38 1.01e-03 GTCACTTCCG CCTGGCAG CGCGCGCCGC chr3:183967308-183967388 34 1.01e-03 TCGAAGAGCG CTTAGTAA AGGACGGAAG chr9:131038315-131038395 18 1.01e-03 GAGGCGTAAC CAGGGCGA TACTGGAGCG chr11:76758795-76758875 33 1.05e-03 cggtcgttgc catggcat ttgtaaactg chr19:14117082-14117162 41 1.15e-03 TTTCCCTCAC CGGGGCAA CTGTTGCTAC chr12:25348052-25348132 63 1.15e-03 CACTTGAGCT CCAGGAAA AGAGCGCAGC chr19:5802424-5802504 11 1.15e-03 TCGCTGTTGC CGGGGCAA CCGTTTTACA chr1:246760751-246760831 25 1.15e-03 TTATGGTTGT CGTAACAA CACTAGATAT chr3:38767282-38767362 36 1.25e-03 CTGCTGTTAC CTAGACAA AGGCATGTAA chr14:106267661-10626774 50 1.25e-03 CGTGTCTGAC CAAGGCAG CACCATGGAC chr17:1953211-1953291 73 1.28e-03 CCACGGTTGC CCTGGAGA chr1:43613509-43613589 39 1.28e-03 GACGCCGTTG CCTGGAGA CAGCGGGGAC chr2:172289924-172290004 69 1.38e-03 GGACTTAGAG CATGGCGG TGGG chr12:101673889-10167396 18 1.38e-03 TTGTCTCCAA CATGGCGG CGCCCAGGGG chr21:46961693-46961773 22 1.38e-03 TGGCCCGTCC CGAAGCAA CACGTGCCTG chr1:245132890-245132970 46 1.38e-03 ACATTGCAGC CTTGACGA CGCAATGTTT chrX:153991783-153991863 12 1.41e-03 TAAGCTCTGC CATAGCCA CGTGGTGAAC chr16:30538660-30538740 23 1.59e-03 GGATAGTTGC CAAGGAGA CAGCCCCGCC chr12:13254220-13254300 22 1.74e-03 CGCCCGGTCG CCTAGCAG CGGGGCGCGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATGGCAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:65951330-65951410 1.3e-05 57_[+1]_15 chr11:116969269-11696934 1.3e-05 39_[+1]_33 chr16:89766682-89766762 1.3e-05 28_[+1]_44 chr8:144513006-144513086 1.3e-05 16_[+1]_56 chr8:19627187-19627267 1.3e-05 69_[+1]_3 chr1:207752852-207752932 1.3e-05 60_[+1]_12 chr16:88923256-88923336 1.3e-05 26_[+1]_46 chr5:34839192-34839272 1.3e-05 64_[+1]_8 chr9:130856720-130856800 1.3e-05 53_[+1]_19 chr6:31036713-31036793 1.3e-05 32_[+1]_40 chr1:151682817-151682897 1.3e-05 27_[+1]_45 chr1:26459159-26459239 1.3e-05 46_[+1]_26 chr7:100087610-100087690 1.3e-05 17_[+1]_55 chr22:39615553-39615633 1.3e-05 63_[+1]_9 chr7:1577743-1577823 1.3e-05 54_[+1]_18 chr18:3013524-3013604 1.3e-05 15_[+1]_57 chr19:39536851-39536931 1.3e-05 39_[+1]_33 chr1:155804474-155804554 1.3e-05 36_[+1]_36 chr10:17514954-17515034 1.3e-05 57_[+1]_15 chr19:50554343-50554423 1.3e-05 59_[+1]_13 chr7:32945090-32945170 1.3e-05 41_[+1]_31 chr7:45129089-45129169 1.3e-05 42_[+1]_30 chr5:673024-673104 1.3e-05 72_[+1] chr17:49205596-49205676 1.3e-05 37_[+1]_35 chr20:1404644-1404724 1.3e-05 54_[+1]_18 chr7:76025576-76025656 1.3e-05 71_[+1]_1 chr19:17012777-17012857 1.3e-05 61_[+1]_11 chr7:100104305-100104385 1.3e-05 54_[+1]_18 chr20:30085819-30085899 1.3e-05 55_[+1]_17 chr1:32254231-32254311 2.2e-05 38_[+1]_34 chr1:208267801-208267881 2.2e-05 28_[+1]_44 chr3:167098081-167098161 2.2e-05 54_[+1]_18 chr21:43916461-43916541 2.2e-05 24_[+1]_48 chr11:44564033-44564113 2.2e-05 57_[+1]_15 chr12:54653399-54653479 2.2e-05 33_[+1]_39 chr16:759704-759784 2.2e-05 13_[+1]_59 chr10:3916055-3916135 2.2e-05 52_[+1]_20 chr1:21525618-21525698 2.2e-05 64_[+1]_8 chr14:105948381-10594846 3.1e-05 14_[+1]_58 chr10:76349149-76349229 3.1e-05 45_[+1]_27 chr16:30959605-30959685 3.1e-05 38_[+1]_34 chr1:20335054-20335134 3.1e-05 43_[+1]_29 chr6:144020052-144020132 4.3e-05 4_[+1]_68 chr1:156076153-156076233 4.3e-05 11_[+1]_61 chr20:30467588-30467668 4.3e-05 25_[+1]_47 chr15:42352043-42352123 4.3e-05 29_[+1]_43 chr1:156456862-156456942 7.3e-05 66_[+1]_6 chr3:42814720-42814800 7.3e-05 22_[+1]_50 chr4:128554025-128554105 7.3e-05 15_[+1]_57 chr8:30515792-30515872 7.3e-05 72_[+1] chr8:29939952-29940032 7.3e-05 27_[+1]_45 chr7:129142266-129142346 7.3e-05 33_[+1]_39 chr11:102980101-10298018 7.3e-05 65_[+1]_7 chr6:2739734-2739814 7.3e-05 27_[+1]_45 chrX:133938031-133938111 7.3e-05 40_[+1]_32 chr19:46981764-46981844 7.3e-05 26_[+1]_46 chr8:125622634-125622714 7.3e-05 34_[+1]_38 chr17:7117373-7117453 7.3e-05 6_[+1]_66 chr2:232469502-232469582 8.7e-05 69_[+1]_3 chr19:9945455-9945535 8.7e-05 10_[+1]_62 chr9:3525842-3525922 8.7e-05 56_[+1]_16 chr9:132175989-132176069 0.00011 51_[+1]_21 chr1:155164695-155164775 0.00011 31_[+1]_41 chr5:81046922-81047002 0.00011 14_[+1]_58 chr17:74137371-74137451 0.00011 14_[+1]_58 chr6:43142468-43142548 0.00012 22_[+1]_50 chr15:101142446-10114252 0.00012 22_[+1]_50 chr1:100817826-100817906 0.00012 24_[+1]_48 chr3:13493335-13493415 0.00015 29_[+1]_43 chr2:241771917-241771997 0.00015 15_[+1]_57 chr19:59084191-59084271 0.00015 53_[+1]_19 chr1:193030288-193030368 0.00015 21_[+1]_51 chr7:20346900-20346980 0.00015 18_[+1]_54 chr15:72598746-72598826 0.00015 68_[+1]_4 chr12:76478527-76478607 0.00019 63_[+1]_9 chr19:47940096-47940176 0.00019 55_[+1]_17 chr19:54684055-54684135 0.00019 51_[+1]_21 chr19:48972160-48972240 0.00019 40_[+1]_32 chr19:18228600-18228680 0.00019 54_[+1]_18 chr16:4784800-4784880 0.00019 54_[+1]_18 chr19:15334362-15334442 0.00019 28_[+1]_44 chr19:11484380-11484460 0.00019 53_[+1]_19 chr11:47600196-47600276 0.0002 50_[+1]_22 chr17:41132517-41132597 0.00027 28_[+1]_44 chr22:31460091-31460171 0.00027 19_[+1]_53 chr15:90728479-90728559 0.00027 20_[+1]_52 chr11:15988803-15988883 0.00027 43_[+1]_29 chr17:4635084-4635164 0.00031 8_[+1]_64 chr19:13842469-13842549 0.00031 22_[+1]_50 chr1:154178819-154178899 0.00031 42_[+1]_30 chr7:100273237-100273317 0.00033 56_[+1]_16 chr12:125473585-12547366 0.00033 23_[+1]_49 chr20:43992103-43992183 0.00035 20_[+1]_52 chr11:66049995-66050075 0.00035 17_[+1]_55 chr2:43822848-43822928 0.00035 66_[+1]_6 chr15:43803168-43803248 0.00035 59_[+1]_13 chr19:17580295-17580375 0.00035 64_[+1]_8 chr20:50157925-50158005 0.0004 1_[+1]_71 chr19:10806565-10806645 0.0004 52_[+1]_20 chr1:2574707-2574787 0.0004 27_[+1]_45 chr12:96883277-96883357 0.0004 61_[+1]_11 chr3:171912641-171912721 0.0004 54_[+1]_18 chr16:89752985-89753065 0.00049 22_[+1]_50 chr6:42013416-42013496 0.00049 3_[+1]_69 chr21:44847183-44847263 0.00049 66_[+1]_6 chr17:19265916-19265996 0.00049 34_[+1]_38 chr5:176884803-176884883 0.00049 62_[+1]_10 chr5:149893452-149893532 0.00049 53_[+1]_19 chr6:52285089-52285169 0.00053 62_[+1]_10 chr2:74648747-74648827 0.00053 9_[+1]_63 chr19:6066808-6066888 0.00053 53_[+1]_19 chr1:12719165-12719245 0.00057 53_[+1]_19 chr16:67891920-67892000 0.00057 10_[+1]_62 chr1:156251150-156251230 0.00057 43_[+1]_29 chr19:54370838-54370918 0.00069 62_[+1]_10 chr1:245026238-245026318 0.00069 22_[+1]_50 chr19:46296100-46296180 0.00069 14_[+1]_58 chr16:58283798-58283878 0.00069 19_[+1]_53 chr16:58160964-58161044 0.00069 8_[+1]_64 chr16:75590150-75590230 0.00069 31_[+1]_41 chr8:145149727-145149807 0.00069 22_[+1]_50 chr11:125387199-12538727 0.00069 19_[+1]_53 chr16:58529152-58529232 0.00069 57_[+1]_15 chr12:6716682-6716762 0.00069 21_[+1]_51 chr19:55690772-55690852 0.00069 45_[+1]_27 chr19:14492968-14493048 0.0007 21_[+1]_51 chr12:49595055-49595135 0.0007 7_[+1]_65 chr22:30988192-30988272 0.00075 61_[+1]_11 chr7:128432954-128433034 0.00083 56_[+1]_16 chr14:23356070-23356150 0.00083 59_[+1]_13 chr16:3202288-3202368 0.00088 37_[+1]_35 chr10:99161018-99161098 0.00088 20_[+1]_52 chr16:88848328-88848408 0.00088 28_[+1]_44 chr20:37101364-37101444 0.00088 39_[+1]_33 chr11:59436567-59436647 0.00088 57_[+1]_15 chr19:41903234-41903314 0.001 37_[+1]_35 chr3:183967308-183967388 0.001 33_[+1]_39 chr9:131038315-131038395 0.001 17_[+1]_55 chr11:76758795-76758875 0.001 32_[+1]_40 chr19:14117082-14117162 0.0012 40_[+1]_32 chr12:25348052-25348132 0.0012 62_[+1]_10 chr19:5802424-5802504 0.0012 10_[+1]_62 chr1:246760751-246760831 0.0012 24_[+1]_48 chr3:38767282-38767362 0.0012 35_[+1]_37 chr14:106267661-10626774 0.0012 49_[+1]_23 chr17:1953211-1953291 0.0013 72_[+1] chr1:43613509-43613589 0.0013 38_[+1]_34 chr2:172289924-172290004 0.0014 68_[+1]_4 chr12:101673889-10167396 0.0014 17_[+1]_55 chr21:46961693-46961773 0.0014 21_[+1]_51 chr1:245132890-245132970 0.0014 45_[+1]_27 chrX:153991783-153991863 0.0014 11_[+1]_61 chr16:30538660-30538740 0.0016 22_[+1]_50 chr12:13254220-13254300 0.0017 21_[+1]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATGGCAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CATGGCAA width=8 seqs=154 chr11:65951330-65951410 ( 58) CATGGCAA 1 chr11:116969269-11696934 ( 40) CATGGCAA 1 chr16:89766682-89766762 ( 29) CATGGCAA 1 chr8:144513006-144513086 ( 17) CATGGCAA 1 chr8:19627187-19627267 ( 70) CATGGCAA 1 chr1:207752852-207752932 ( 61) CATGGCAA 1 chr16:88923256-88923336 ( 27) CATGGCAA 1 chr5:34839192-34839272 ( 65) CATGGCAA 1 chr9:130856720-130856800 ( 54) CATGGCAA 1 chr6:31036713-31036793 ( 33) CATGGCAA 1 chr1:151682817-151682897 ( 28) CATGGCAA 1 chr1:26459159-26459239 ( 47) CATGGCAA 1 chr7:100087610-100087690 ( 18) CATGGCAA 1 chr22:39615553-39615633 ( 64) CATGGCAA 1 chr7:1577743-1577823 ( 55) CATGGCAA 1 chr18:3013524-3013604 ( 16) CATGGCAA 1 chr19:39536851-39536931 ( 40) CATGGCAA 1 chr1:155804474-155804554 ( 37) CATGGCAA 1 chr10:17514954-17515034 ( 58) CATGGCAA 1 chr19:50554343-50554423 ( 60) CATGGCAA 1 chr7:32945090-32945170 ( 42) CATGGCAA 1 chr7:45129089-45129169 ( 43) CATGGCAA 1 chr5:673024-673104 ( 73) CATGGCAA 1 chr17:49205596-49205676 ( 38) CATGGCAA 1 chr20:1404644-1404724 ( 55) CATGGCAA 1 chr7:76025576-76025656 ( 72) CATGGCAA 1 chr19:17012777-17012857 ( 62) CATGGCAA 1 chr7:100104305-100104385 ( 55) CATGGCAA 1 chr20:30085819-30085899 ( 56) CATGGCAA 1 chr1:32254231-32254311 ( 39) CATAGCAA 1 chr1:208267801-208267881 ( 29) CATAGCAA 1 chr3:167098081-167098161 ( 55) CATAGCAA 1 chr21:43916461-43916541 ( 25) CATAGCAA 1 chr11:44564033-44564113 ( 58) CATAGCAA 1 chr12:54653399-54653479 ( 34) CATAGCAA 1 chr16:759704-759784 ( 14) CATAGCAA 1 chr10:3916055-3916135 ( 53) CATAGCAA 1 chr1:21525618-21525698 ( 65) CATAGCAA 1 chr14:105948381-10594846 ( 15) CATGGAAA 1 chr10:76349149-76349229 ( 46) CATGGAAA 1 chr16:30959605-30959685 ( 39) CATGGAAA 1 chr1:20335054-20335134 ( 44) CATGGAAA 1 chr6:144020052-144020132 ( 5) CTTGGCAA 1 chr1:156076153-156076233 ( 12) CTTGGCAA 1 chr20:30467588-30467668 ( 26) CTTGGCAA 1 chr15:42352043-42352123 ( 30) CTTGGCAA 1 chr1:156456862-156456942 ( 67) CCTGGCAA 1 chr3:42814720-42814800 ( 23) CCTGGCAA 1 chr4:128554025-128554105 ( 16) CCTGGCAA 1 chr8:30515792-30515872 ( 73) CATGACAA 1 chr8:29939952-29940032 ( 28) CATGACAA 1 chr7:129142266-129142346 ( 34) CCTGGCAA 1 chr11:102980101-10298018 ( 66) CCTGGCAA 1 chr6:2739734-2739814 ( 28) CATGACAA 1 chrX:133938031-133938111 ( 41) CATGACAA 1 chr19:46981764-46981844 ( 27) CATGACAA 1 chr8:125622634-125622714 ( 35) CATGACAA 1 chr17:7117373-7117453 ( 7) CCTGGCAA 1 chr2:232469502-232469582 ( 70) CAAGGCAA 1 chr19:9945455-9945535 ( 11) CAAGGCAA 1 chr9:3525842-3525922 ( 57) CAAGGCAA 1 chr9:132175989-132176069 ( 52) CATGGCGA 1 chr1:155164695-155164775 ( 32) CATGGCGA 1 chr5:81046922-81047002 ( 15) CATGGCGA 1 chr17:74137371-74137451 ( 15) CATGGCGA 1 chr6:43142468-43142548 ( 23) CTTAGCAA 1 chr15:101142446-10114252 ( 23) CTTAGCAA 1 chr1:100817826-100817906 ( 25) CTTAGCAA 1 chr3:13493335-13493415 ( 30) CGTGGCAA 1 chr2:241771917-241771997 ( 16) CGTGGCAA 1 chr19:59084191-59084271 ( 54) CGTGGCAA 1 chr1:193030288-193030368 ( 22) CGTGGCAA 1 chr7:20346900-20346980 ( 19) CATGGTAA 1 chr15:72598746-72598826 ( 69) CATGGTAA 1 chr12:76478527-76478607 ( 64) CCTAGCAA 1 chr19:47940096-47940176 ( 56) CAGGGCAA 1 chr19:54684055-54684135 ( 52) CCTAGCAA 1 chr19:48972160-48972240 ( 41) CCTAGCAA 1 chr19:18228600-18228680 ( 55) CCTAGCAA 1 chr16:4784800-4784880 ( 55) CATAACAA 1 chr19:15334362-15334442 ( 29) CCTAGCAA 1 chr19:11484380-11484460 ( 54) CAGGGCAA 1 chr11:47600196-47600276 ( 51) CTTGGAAA 1 chr17:41132517-41132597 ( 29) CATGGCAG 1 chr22:31460091-31460171 ( 20) CATGGCAG 1 chr15:90728479-90728559 ( 21) CATGGCAG 1 chr11:15988803-15988883 ( 44) CTTGACAA 1 chr17:4635084-4635164 ( 9) CAAGGAAA 1 chr19:13842469-13842549 ( 23) CCTGACAA 1 chr1:154178819-154178899 ( 43) CATAGTAA 1 chr7:100273237-100273317 ( 57) CTAGGCAA 1 chr12:125473585-12547366 ( 24) CAGAGCAA 1 chr20:43992103-43992183 ( 21) CATGGAGA 1 chr11:66049995-66050075 ( 18) CATGGAGA 1 chr2:43822848-43822928 ( 67) CATGGAGA 1 chr15:43803168-43803248 ( 60) CATGGAGA 1 chr19:17580295-17580375 ( 65) CATGGAGA 1 chr20:50157925-50158005 ( 2) CAAGACAA 1 chr19:10806565-10806645 ( 53) CCAGGCAA 1 chr1:2574707-2574787 ( 28) CCAGGCAA 1 chr12:96883277-96883357 ( 62) CCAGGCAA 1 chr3:171912641-171912721 ( 55) CTTGGCGA 1 chr16:89752985-89753065 ( 23) CTTGGTAA 1 chr6:42013416-42013496 ( 4) CCTAGAAA 1 chr21:44847183-44847263 ( 67) CCTGGCGA 1 chr17:19265916-19265996 ( 35) CCTAGAAA 1 chr5:176884803-176884883 ( 63) CAGGGAAA 1 chr5:149893452-149893532 ( 54) CATGACGA 1 chr6:52285089-52285169 ( 63) CTGGGCAA 1 chr2:74648747-74648827 ( 10) CTGGGCAA 1 chr19:6066808-6066888 ( 54) CTGGGCAA 1 chr1:12719165-12719245 ( 54) CATGGGAA 1 chr16:67891920-67892000 ( 11) CATGGGAA 1 chr1:156251150-156251230 ( 44) CATGATAA 1 chr19:54370838-54370918 ( 63) CACGGCAA 1 chr1:245026238-245026318 ( 23) CAAAGAAA 1 chr19:46296100-46296180 ( 15) CCGGGCAA 1 chr16:58283798-58283878 ( 20) CCGGGCAA 1 chr16:58160964-58161044 ( 9) CATGCCAA 1 chr16:75590150-75590230 ( 32) CACGGCAA 1 chr8:145149727-145149807 ( 23) CACGGCAA 1 chr11:125387199-12538727 ( 20) CATGCCAA 1 chr16:58529152-58529232 ( 58) CAGGACAA 1 chr12:6716682-6716762 ( 22) CCGGGCAA 1 chr19:55690772-55690852 ( 46) CCGGGCAA 1 chr19:14492968-14493048 ( 22) CTAAGCAA 1 chr12:49595055-49595135 ( 8) CTAAGCAA 1 chr22:30988192-30988272 ( 62) CAAGGTAA 1 chr7:128432954-128433034 ( 57) CTTGGCAG 1 chr14:23356070-23356150 ( 60) CATGGCCA 1 chr16:3202288-3202368 ( 38) CGTGGCGA 1 chr10:99161018-99161098 ( 21) CGTAGAAA 1 chr16:88848328-88848408 ( 29) CCTGAAAA 1 chr20:37101364-37101444 ( 40) CGTAGAAA 1 chr11:59436567-59436647 ( 58) CGTGGCGA 1 chr19:41903234-41903314 ( 38) CCTGGCAG 1 chr3:183967308-183967388 ( 34) CTTAGTAA 1 chr9:131038315-131038395 ( 18) CAGGGCGA 1 chr11:76758795-76758875 ( 33) CATGGCAT 1 chr19:14117082-14117162 ( 41) CGGGGCAA 1 chr12:25348052-25348132 ( 63) CCAGGAAA 1 chr19:5802424-5802504 ( 11) CGGGGCAA 1 chr1:246760751-246760831 ( 25) CGTAACAA 1 chr3:38767282-38767362 ( 36) CTAGACAA 1 chr14:106267661-10626774 ( 50) CAAGGCAG 1 chr17:1953211-1953291 ( 73) CCTGGAGA 1 chr1:43613509-43613589 ( 39) CCTGGAGA 1 chr2:172289924-172290004 ( 69) CATGGCGG 1 chr12:101673889-10167396 ( 18) CATGGCGG 1 chr21:46961693-46961773 ( 22) CGAAGCAA 1 chr1:245132890-245132970 ( 46) CTTGACGA 1 chrX:153991783-153991863 ( 12) CATAGCCA 1 chr16:30538660-30538740 ( 23) CAAGGAGA 1 chr12:13254220-13254300 ( 22) CCTAGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATGGCAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.79156 E= 1.9e-089 -1391 168 -1391 -1391 159 -78 -192 -50 -78 -400 -160 199 5 -1391 143 -1391 -86 -458 157 -1391 -49 136 -450 -209 208 -458 -111 -1391 222 -1391 -233 -489 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATGGCAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 154 E= 1.9e-089 0.000000 1.000000 0.000000 0.000000 0.603896 0.181818 0.077922 0.136364 0.116883 0.019481 0.097403 0.766234 0.207792 0.000000 0.792208 0.000000 0.110390 0.012987 0.876623 0.000000 0.142857 0.798701 0.012987 0.045455 0.850649 0.012987 0.136364 0.000000 0.935065 0.000000 0.058442 0.006494 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATGGCAA MEME-1 regular expression -------------------------------------------------------------------------------- CAT[GA]GCAA -------------------------------------------------------------------------------- Time 4.74 secs. ******************************************************************************** ******************************************************************************** MOTIF CCACGTGK MEME-2 width = 8 sites = 71 llr = 601 E-value = 2.0e-046 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCACGTGK MEME-2 Description -------------------------------------------------------------------------------- Simplified A 3:a::::: pos.-specific C 6a:a:::2 probability G 1:::a:a5 matrix T :::::a:3 bits 2.4 * * 2.1 * * 1.9 * * 1.7 *** ** Relative 1.4 ****** Entropy 1.2 ****** (12.2 bits) 0.9 ****** 0.7 ****** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCACGTGG consensus A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACGTGK MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:166459381-166459461 21 3.00e-05 agtaaagctt ccacgtgg tggaagggga chr11:71159687-71159767 34 3.00e-05 GGCGGAGTGG CCACGTGG GCCGCGCGGA chr19:18268124-18268204 55 3.00e-05 ATACACGGCC CCACGTGG GGCGGCTGCC chr19:2151823-2151903 67 3.00e-05 GGCGGGGCGC CCACGTGG AGCTTA chr5:154317281-154317361 29 3.00e-05 GCAAGCGGCC CCACGTGG AAGCTCCAGG chr17:33307428-33307508 30 3.00e-05 CAACTACGAC CCACGTGG CAGACGGGGG chr3:49966970-49967050 47 3.00e-05 TGCCTCCAGG CCACGTGG GCTGGCAGTC chr2:172289924-172290004 26 3.00e-05 ATGCCCAAGT CCACGTGG GAGATACAGC chr12:125473585-12547366 45 3.00e-05 GAAACCCAGC CCACGTGG GTTCCCAGAC chr12:53689013-53689093 33 3.00e-05 CTTATACCAC CCACGTGG AGTAGCATAC chr10:11916869-11916949 50 3.00e-05 GAACCCAGCT CCACGTGG CCTACCTCCC chr2:43822848-43822928 15 3.00e-05 GATTTCTGAA CCACGTGG AGTCGAGGAA chr11:67008700-67008780 25 3.00e-05 GAGCCTTGTC CCACGTGG CACCACACCC chr10:99161018-99161098 41 3.00e-05 CGCTCAGAAC CCACGTGG ATACCCTGTA chr8:124053826-124053906 8 3.00e-05 AGGCCAC CCACGTGG GTGACAGAGG chr1:211752930-211753010 37 3.00e-05 CGAGCCCAGT CCACGTgg gggcgggccg chr7:150759511-150759591 41 3.00e-05 CTCCCTGCCC CCACGTGG CCACCGCTCC chr10:103893411-10389349 34 3.00e-05 GGCAGCGGGT CCACGTGG GGGCGGGGAA chr16:88848328-88848408 57 3.00e-05 TATTGTCAGC CCACGTGG GTGTCCCACA chr20:39657119-39657199 23 3.00e-05 TAAAGGCCCA CCACGTGG CTGCGCGGCC chr7:65580544-65580624 35 3.00e-05 CAGTTTAACT CCACGTGG TCTTTTCCAT chr17:35715508-35715588 28 3.00e-05 CGCCCCCTTC CCACGTGG TCTTCTCCCT chr1:44495869-44495949 73 4.96e-05 ACATCAGCCG CCACGTGT chr1:245026238-245026318 55 4.96e-05 GGCCCGAAGC CCACGTGT ATCCCGAAGA chr3:183967308-183967388 54 4.96e-05 GACGGAAGTT CCACGTGT TTGTGTTGAG chr7:65541383-65541463 38 4.96e-05 TTCCTTCTTA CCACGTGT CCTCCTGTCA chr1:33501812-33501892 38 4.96e-05 TCACTCTGCC CCACGTGT TGGAGATGCT chr15:41407826-41407906 67 4.96e-05 AACACACTCC CCACGTGT GGGCGC chr14:106267661-10626774 37 4.96e-05 AGCTTGGACA CCACGTGT CTGACCAAGG chr2:29118229-29118309 57 4.96e-05 TGCCGGCTCA CCACGTGT TCTCGTCCCC chr7:152372584-152372664 70 6.89e-05 CTAAGCAGAG ACACGTGG GCT chr11:122932217-12293229 65 6.89e-05 GCGTTGCTCA ACACGTGG TCTTACCC chr2:183989580-183989660 39 6.89e-05 TGACCGCGGT ACACGTGG GTGGGCGGTG chr6:138276537-138276617 37 6.89e-05 gctgttctac acacgtgg agatacatgg chr17:71088828-71088908 20 6.89e-05 TCCCTCCCGC ACACGTGG CCCTCCCGCC chr5:38888351-38888431 33 6.89e-05 gatgttctgc acacgtgg ggatatgtgg chr17:4635084-4635164 72 6.89e-05 CTTCAGTGCA ACACGTGG A chr3:50563566-50563646 35 6.89e-05 GACTCAGCAG ACACGTGG CTGGGCTCAG chr1:226186348-226186428 40 8.16e-05 TCAACAGGAC ACACGTGT GAATGCTTGG chr7:128432954-128433034 28 8.16e-05 TCCTCCCAAC ACACGTGT ATCCCCACCA chr16:3202288-3202368 6 8.16e-05 ATAAC ACACGTGT TGGGGCAGGA chrX:48326752-48326832 46 8.16e-05 CCTTGCAGGG ACACGTGT CGGCCTGGCT chr16:58160964-58161044 36 8.16e-05 CAATGTTTTC ACACGTGT TTATGTCATT chr19:17580295-17580375 17 8.16e-05 AGGCTGCAGG ACACGTGT GTTTCCTAAA chr9:132020854-132020934 33 8.16e-05 GGGCTCCCAG ACACGTGT CCCCGGGAGC chr12:123848092-12384817 51 8.16e-05 CCTTCCCTCA ACACGTGT TCAGTACAAA chr8:144025186-144025266 61 1.13e-04 CCTGTAATGC CCACGTGC ATGTCCATTC chr6:33256924-33257004 45 1.13e-04 GAACGGCGAT CCACGTGC AAAACTCCTC chr19:41903234-41903314 10 1.13e-04 GCGCCGAGC CCACGTGC GGCTGCAGTT chr16:89766682-89766762 57 1.13e-04 CGTAGCTCGC CCACGTGC CCAGTGACGT chr4:57302511-57302591 45 1.13e-04 GAGCTCGCGG CCACGTGC GAGCCGCGAA chr15:85143684-85143764 23 1.13e-04 CACAGGAATA CCACGTGC GAAAACAAAG chr11:12131978-12132058 22 1.13e-04 GGGCTACAGC CCACGTGC GCCGGCGGCA chr3:47913038-47913118 61 1.13e-04 CCCATGAGCA CCACGTGC TAGGTGCTGT chr19:1864242-1864322 25 1.13e-04 CGCCCCCAGG CCACGTGC GCGACCCTTC chr17:49336684-49336764 46 1.13e-04 ATTTCCACCT CCACGTGC AAACCGCCTC chrX:153991783-153991863 44 1.34e-04 AGGGAAGCCG ACACGTGC AGTAGCCTAC chr1:156251150-156251230 55 1.34e-04 ATGATAAGGC ACACGTGC CACCCCCAGC chr7:100450172-100450252 45 1.62e-04 ATCCCCGGGC GCACGTGG AGCTGGAGCA chr4:103266658-103266738 43 1.62e-04 CGCCTCCGTA GCACGTGG TGACCCATTT chr15:85524104-85524184 69 1.62e-04 GCGAGGGAGC GCACGTGG GCTG chr19:55691526-55691606 29 1.62e-04 CCCACCCCCT GCACGTGG GCGGTGGCGC chr17:4268549-4268629 26 1.62e-04 AAATCTGGCA GCACGTGG GGCTGCATTG chr14:103995528-10399560 36 1.81e-04 CGTCGCGGAG GCACGTGT GGAGCCCCGG chr18:3013524-3013604 36 1.99e-04 CTGCGGCAGG TCACGTGG GACTGAGAGC chr17:25853716-25853796 37 2.11e-04 AGAGGTCCTC TCACGTGT TGGAAAACGT chr19:5802424-5802504 34 2.32e-04 TTACAAGCGT CCACATGG TGGGCACATG chr21:33765259-33765339 50 2.32e-04 CGCTTCAGGC CCACATgg cgcaggaaga chr16:14728041-14728121 59 2.62e-04 GGCAGGGACT GCACGTGC TGATGGGGTT chr11:116969269-11696934 9 3.08e-04 ACCGCGGG TCACGTGC CGACGCGCGT chr2:202113333-202113413 59 3.16e-04 TCACTTACCA ACACATGT TGGAGATTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACGTGK MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:166459381-166459461 3e-05 20_[+2]_52 chr11:71159687-71159767 3e-05 33_[+2]_39 chr19:18268124-18268204 3e-05 54_[+2]_18 chr19:2151823-2151903 3e-05 66_[+2]_6 chr5:154317281-154317361 3e-05 28_[+2]_44 chr17:33307428-33307508 3e-05 29_[+2]_43 chr3:49966970-49967050 3e-05 46_[+2]_26 chr2:172289924-172290004 3e-05 25_[+2]_47 chr12:125473585-12547366 3e-05 44_[+2]_28 chr12:53689013-53689093 3e-05 32_[+2]_40 chr10:11916869-11916949 3e-05 49_[+2]_23 chr2:43822848-43822928 3e-05 14_[+2]_58 chr11:67008700-67008780 3e-05 24_[+2]_48 chr10:99161018-99161098 3e-05 40_[+2]_32 chr8:124053826-124053906 3e-05 7_[+2]_65 chr1:211752930-211753010 3e-05 36_[+2]_36 chr7:150759511-150759591 3e-05 40_[+2]_32 chr10:103893411-10389349 3e-05 33_[+2]_39 chr16:88848328-88848408 3e-05 56_[+2]_16 chr20:39657119-39657199 3e-05 22_[+2]_50 chr7:65580544-65580624 3e-05 34_[+2]_38 chr17:35715508-35715588 3e-05 27_[+2]_45 chr1:44495869-44495949 5e-05 72_[+2] chr1:245026238-245026318 5e-05 54_[+2]_18 chr3:183967308-183967388 5e-05 53_[+2]_19 chr7:65541383-65541463 5e-05 37_[+2]_35 chr1:33501812-33501892 5e-05 37_[+2]_35 chr15:41407826-41407906 5e-05 66_[+2]_6 chr14:106267661-10626774 5e-05 36_[+2]_36 chr2:29118229-29118309 5e-05 56_[+2]_16 chr7:152372584-152372664 6.9e-05 69_[+2]_3 chr11:122932217-12293229 6.9e-05 64_[+2]_8 chr2:183989580-183989660 6.9e-05 38_[+2]_34 chr6:138276537-138276617 6.9e-05 36_[+2]_36 chr17:71088828-71088908 6.9e-05 19_[+2]_53 chr5:38888351-38888431 6.9e-05 32_[+2]_40 chr17:4635084-4635164 6.9e-05 71_[+2]_1 chr3:50563566-50563646 6.9e-05 34_[+2]_38 chr1:226186348-226186428 8.2e-05 39_[+2]_33 chr7:128432954-128433034 8.2e-05 27_[+2]_45 chr16:3202288-3202368 8.2e-05 5_[+2]_67 chrX:48326752-48326832 8.2e-05 45_[+2]_27 chr16:58160964-58161044 8.2e-05 35_[+2]_37 chr19:17580295-17580375 8.2e-05 16_[+2]_56 chr9:132020854-132020934 8.2e-05 32_[+2]_40 chr12:123848092-12384817 8.2e-05 50_[+2]_22 chr8:144025186-144025266 0.00011 60_[+2]_12 chr6:33256924-33257004 0.00011 44_[+2]_28 chr19:41903234-41903314 0.00011 9_[+2]_63 chr16:89766682-89766762 0.00011 56_[+2]_16 chr4:57302511-57302591 0.00011 44_[+2]_28 chr15:85143684-85143764 0.00011 22_[+2]_50 chr11:12131978-12132058 0.00011 21_[+2]_51 chr3:47913038-47913118 0.00011 60_[+2]_12 chr19:1864242-1864322 0.00011 24_[+2]_48 chr17:49336684-49336764 0.00011 45_[+2]_27 chrX:153991783-153991863 0.00013 43_[+2]_29 chr1:156251150-156251230 0.00013 54_[+2]_18 chr7:100450172-100450252 0.00016 44_[+2]_28 chr4:103266658-103266738 0.00016 42_[+2]_30 chr15:85524104-85524184 0.00016 68_[+2]_4 chr19:55691526-55691606 0.00016 28_[+2]_44 chr17:4268549-4268629 0.00016 25_[+2]_47 chr14:103995528-10399560 0.00018 35_[+2]_37 chr18:3013524-3013604 0.0002 35_[+2]_37 chr17:25853716-25853796 0.00021 36_[+2]_36 chr19:5802424-5802504 0.00023 33_[+2]_39 chr21:33765259-33765339 0.00023 49_[+2]_23 chr16:14728041-14728121 0.00026 58_[+2]_14 chr11:116969269-11696934 0.00031 8_[+2]_64 chr2:202113333-202113413 0.00032 58_[+2]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACGTGK MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCACGTGK width=8 seqs=71 chr1:166459381-166459461 ( 21) CCACGTGG 1 chr11:71159687-71159767 ( 34) CCACGTGG 1 chr19:18268124-18268204 ( 55) CCACGTGG 1 chr19:2151823-2151903 ( 67) CCACGTGG 1 chr5:154317281-154317361 ( 29) CCACGTGG 1 chr17:33307428-33307508 ( 30) CCACGTGG 1 chr3:49966970-49967050 ( 47) CCACGTGG 1 chr2:172289924-172290004 ( 26) CCACGTGG 1 chr12:125473585-12547366 ( 45) CCACGTGG 1 chr12:53689013-53689093 ( 33) CCACGTGG 1 chr10:11916869-11916949 ( 50) CCACGTGG 1 chr2:43822848-43822928 ( 15) CCACGTGG 1 chr11:67008700-67008780 ( 25) CCACGTGG 1 chr10:99161018-99161098 ( 41) CCACGTGG 1 chr8:124053826-124053906 ( 8) CCACGTGG 1 chr1:211752930-211753010 ( 37) CCACGTGG 1 chr7:150759511-150759591 ( 41) CCACGTGG 1 chr10:103893411-10389349 ( 34) CCACGTGG 1 chr16:88848328-88848408 ( 57) CCACGTGG 1 chr20:39657119-39657199 ( 23) CCACGTGG 1 chr7:65580544-65580624 ( 35) CCACGTGG 1 chr17:35715508-35715588 ( 28) CCACGTGG 1 chr1:44495869-44495949 ( 73) CCACGTGT 1 chr1:245026238-245026318 ( 55) CCACGTGT 1 chr3:183967308-183967388 ( 54) CCACGTGT 1 chr7:65541383-65541463 ( 38) CCACGTGT 1 chr1:33501812-33501892 ( 38) CCACGTGT 1 chr15:41407826-41407906 ( 67) CCACGTGT 1 chr14:106267661-10626774 ( 37) CCACGTGT 1 chr2:29118229-29118309 ( 57) CCACGTGT 1 chr7:152372584-152372664 ( 70) ACACGTGG 1 chr11:122932217-12293229 ( 65) ACACGTGG 1 chr2:183989580-183989660 ( 39) ACACGTGG 1 chr6:138276537-138276617 ( 37) ACACGTGG 1 chr17:71088828-71088908 ( 20) ACACGTGG 1 chr5:38888351-38888431 ( 33) ACACGTGG 1 chr17:4635084-4635164 ( 72) ACACGTGG 1 chr3:50563566-50563646 ( 35) ACACGTGG 1 chr1:226186348-226186428 ( 40) ACACGTGT 1 chr7:128432954-128433034 ( 28) ACACGTGT 1 chr16:3202288-3202368 ( 6) ACACGTGT 1 chrX:48326752-48326832 ( 46) ACACGTGT 1 chr16:58160964-58161044 ( 36) ACACGTGT 1 chr19:17580295-17580375 ( 17) ACACGTGT 1 chr9:132020854-132020934 ( 33) ACACGTGT 1 chr12:123848092-12384817 ( 51) ACACGTGT 1 chr8:144025186-144025266 ( 61) CCACGTGC 1 chr6:33256924-33257004 ( 45) CCACGTGC 1 chr19:41903234-41903314 ( 10) CCACGTGC 1 chr16:89766682-89766762 ( 57) CCACGTGC 1 chr4:57302511-57302591 ( 45) CCACGTGC 1 chr15:85143684-85143764 ( 23) CCACGTGC 1 chr11:12131978-12132058 ( 22) CCACGTGC 1 chr3:47913038-47913118 ( 61) CCACGTGC 1 chr19:1864242-1864322 ( 25) CCACGTGC 1 chr17:49336684-49336764 ( 46) CCACGTGC 1 chrX:153991783-153991863 ( 44) ACACGTGC 1 chr1:156251150-156251230 ( 55) ACACGTGC 1 chr7:100450172-100450252 ( 45) GCACGTGG 1 chr4:103266658-103266738 ( 43) GCACGTGG 1 chr15:85524104-85524184 ( 69) GCACGTGG 1 chr19:55691526-55691606 ( 29) GCACGTGG 1 chr17:4268549-4268629 ( 26) GCACGTGG 1 chr14:103995528-10399560 ( 36) GCACGTGT 1 chr18:3013524-3013604 ( 36) TCACGTGG 1 chr17:25853716-25853796 ( 37) TCACGTGT 1 chr19:5802424-5802504 ( 34) CCACATGG 1 chr21:33765259-33765339 ( 50) CCACATGG 1 chr16:14728041-14728121 ( 59) GCACGTGC 1 chr11:116969269-11696934 ( 9) TCACGTGC 1 chr2:202113333-202113413 ( 59) ACACATGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACGTGK MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.83776 E= 2.0e-046 41 93 -158 -219 -1279 168 -1279 -1279 231 -1279 -1279 -1279 -1279 168 -1279 -1279 -225 -1279 170 -1279 -1279 -1279 -1279 237 -1279 -1279 176 -1279 -1279 -66 86 47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACGTGK MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 71 E= 2.0e-046 0.267606 0.591549 0.098592 0.042254 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.042254 0.000000 0.957746 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.197183 0.535211 0.267606 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACGTGK MEME-2 regular expression -------------------------------------------------------------------------------- [CA]CACGTG[GT] -------------------------------------------------------------------------------- Time 8.12 secs. ******************************************************************************** ******************************************************************************** MOTIF GTTGCYAK MEME-3 width = 8 sites = 83 llr = 616 E-value = 4.4e-025 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTTGCYAK MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1::1::91 pos.-specific C ::2:a6:1 probability G 9::7:::3 matrix T :a82:415 bits 2.4 * 2.1 * 1.9 * 1.7 ** * * Relative 1.4 *** * * Entropy 1.2 *** * * (10.7 bits) 0.9 *** *** 0.7 *** *** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTTGCCAT consensus T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTGCYAK MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr21:38738995-38739075 69 1.97e-05 TTGATTGACA GTTGCTAT AGCG chr11:65951330-65951410 21 1.97e-05 cctgcaggtt gttgccat ggaaaggagt chr1:208267801-208267881 68 1.97e-05 ATCATACTCT GTTGCCAT GGAGA chr19:58874223-58874303 65 1.97e-05 GGCGTCCTGC GTTGCCAT GGATGCGC chr16:75590150-75590230 12 1.97e-05 GCTTCTCCTG GTTGCCAT CGCCTCGGTC chr20:1305882-1305962 55 1.97e-05 GGTTACGGCG GTTGCTAT GGGCTACGGC chr1:245132890-245132970 5 1.97e-05 TTTT GTTGCTAT GAGAACCTTC chr5:149893452-149893532 38 1.97e-05 AAAGTGCAGC GTTGCCAT GGCGTCTCCA chr9:3525842-3525922 67 1.97e-05 CAAGGCAACG GTTGCTAT AACTCA chr1:20335054-20335134 71 1.97e-05 acttccaggt gttgccat gg chr7:100104305-100104385 18 1.97e-05 tcggtaggtg gttgccat ggaaagggga chr11:15988803-15988883 17 1.97e-05 CACACCCAGT GTTGCTAT AGGAACCAAA chrX:71314912-71314992 40 1.97e-05 CATGGCCCCT GTTGCCAT GGTTCCCAAG chr19:54684055-54684135 33 4.98e-05 GTGGCGTTCT GTTGCTAG GGAACCGTTT chr6:138276537-138276617 65 4.98e-05 gggtggccat gttgccag gcatgtgt chr10:106113446-10611352 55 4.98e-05 GGGCGTGTCC GTTGCCAG GCGACGGGCC chr5:38888351-38888431 61 4.98e-05 gggctgccat gttgctag gcacatgttg chr11:95149293-95149373 42 4.98e-05 ttaaatgagg gttgctag gtgaaggttg chr19:18058754-18058834 12 4.98e-05 CCCCGCGTGC GTTGCCAG GACGAccggg chr1:33546609-33546689 51 4.98e-05 GCGGCACCCG GTTGCCAG GGCTACGGCC chr12:49595055-49595135 27 4.98e-05 GTATTATACA GTTGCTAG GAGACAGACT chr17:74449352-74449432 17 4.98e-05 CCGGGATGCA GTTGCTAG GAGCCACCGC chr17:46102424-46102504 61 4.98e-05 ACGCGTGCAG GTTGCTAG GGCAACGTCC chr19:55690772-55690852 60 4.98e-05 GCAACGGGTT GTTGCCAG GACAACGGGC chr19:6066808-6066888 8 4.98e-05 AACAACG GTTGCCAG GGGCAACGCA chr7:1577743-1577823 12 6.27e-05 GGGCTTCTCG GTTTCCAT GACAACCGTG chr15:43803168-43803248 13 6.27e-05 CTCCGCGGGT GTTTCCAT GGAGACCGAG chr16:58529152-58529232 38 6.27e-05 AATAGCTCCT GTTTCCAT GACAGCTGTT chr10:3916055-3916135 23 6.27e-05 CACTGTCACT GTTTCCAT AGATACACTG chr6:52285089-52285169 20 7.62e-05 GATGTTTAGC GTTACCAT GGATCCTGGA chr1:26459159-26459239 73 7.62e-05 cgactcagaa gttaccat chr15:72598746-72598826 38 7.62e-05 GCAGCTTCCT GTTACCAT AGCCACAAGT chr22:30988192-30988272 72 9.67e-05 CAAGGTAACG GTTGCTAA G chr12:100594459-10059453 46 9.67e-05 GGCGTCCTCC GTTGCTAA GGTGACCAGA chr16:89752985-89753065 33 9.67e-05 CTTGGTAACC GTTGCTAA GGAGAGGAAG chr21:44847183-44847263 19 9.67e-05 AGATCGGGCG GTTGCCAA GAGACTGGCG chr17:19265916-19265996 11 9.67e-05 GCCGCGCGCG GTTGCTAA GAGACGCCGG chr3:171912641-171912721 22 9.67e-05 TGACTACCCT GTTGCTAA GAAACCTGTT chr6:37070357-37070437 38 1.16e-04 GACAGCGCTC GTTTCCAG GCGACTGTTC chr11:125387199-12538727 41 1.37e-04 GGTTCCCATG GTTACTAG GAAGAGCTGC chr7:32945090-32945170 6 1.37e-04 gggtc gttaccag gaaaggggtg chr19:11484380-11484460 33 1.37e-04 CCACTTTGGA GTTACCAG GAGACAAGGT chr11:66049995-66050075 54 1.88e-04 CATGGTGACG GTCGCCAT GGGGACGGCG chr5:34839192-34839272 16 1.88e-04 AGTGCCCCGC GTCGCCAT GGCTACAGGC chr11:102980101-10298018 48 1.88e-04 GTAGTGCTCC GTCGCCAT AGCGACTACC chr14:23356070-23356150 73 1.88e-04 GGCCACTGCG GTCGCCAT chr19:17012777-17012857 35 1.88e-04 CCCACCAATC GTCGCCAT GGTGACAAGC chr19:14117082-14117162 51 2.19e-04 CGGGGCAACT GTTGCTAC CCACCCTAGT chr14:105948381-10594846 34 2.19e-04 CGGGGCGGTT GTTGCTAC TGTTTGTCTG chr1:54821761-54821841 22 2.19e-04 TAGAAGGCCT GTTGCTAC GGCAACCATA chr12:96883277-96883357 44 2.19e-04 GGGATGCCCG GTTGCCAC GAGACCGTCG chr22:39615553-39615633 27 2.46e-04 tcactttacc attgccat ggcaacatcc chr17:49205596-49205676 1 2.46e-04 . attgccat ggaaatgggt chr19:9945455-9945535 23 2.46e-04 AGGCAACTGC ATTGCTAT GGCAACAGCA chr19:46981764-46981844 49 2.46e-04 ATGTGCTGTG GTTTCCAA GGCAACAACT chr16:84178841-84178921 41 3.38e-04 GTGCGCAGCG GTTGCCTG GGCGACCGGG chr3:195163940-195164020 55 3.38e-04 ATGCGCGGGC GTCGCTAG GCGGGACGCA chr11:47600196-47600276 61 3.38e-04 CTTGGAAACG GTCGCCAG GGAAACCGTT chr19:52693010-52693090 52 3.38e-04 TACAATCTTG GTCGCTAG GACACGGCTA chr7:100087610-100087690 66 3.38e-04 GGCCCCTACC GTTGCCTG GCAACGC chr1:43613509-43613589 11 3.38e-04 CCCGAGCGCT GTTGCCTG GAGACCACGG chr6:33256924-33257004 16 3.92e-04 CTTGGGGGCT GTCTCCAT CTCGCCCACC chr19:6110464-6110544 40 3.92e-04 CACGGCTACA GTCTCTAT ggcggcggcg chr10:76349149-76349229 70 3.92e-04 AGTCGTCATG GTTTCTTT GTT chr7:20346900-20346980 34 3.92e-04 TAACGTGTTT GTTCCCAT GGAGAAACAA chr15:90728479-90728559 48 3.92e-04 CTGGGCCCGC GTTCCCAT GGCCACCGGG chr1:207752852-207752932 10 4.12e-04 atgaaagca attgctag ctgccctcat chr8:145149727-145149807 65 4.67e-04 CCCACCGCCA GTTTCCAC GACAACCC chr1:246760751-246760831 56 4.67e-04 CTCAGCGCTA GTCACCAT AGTATCAAAG chr1:155804474-155804554 54 4.67e-04 acccccagat gttacctt atatggttta chr7:76025576-76025656 62 4.67e-04 aacacctgga gttacctt tccatggcaa chr20:30085819-30085899 30 4.67e-04 AGTCTCCTTG GTCACTAT CTCCTTAGAG chr1:156456862-156456942 48 5.51e-04 AGAGGATGGG GTTGCTTA GGCAACTGTC chr8:19627187-19627267 55 5.51e-04 acacctggaa gttaccac tcccttccat chr11:64902596-64902676 52 5.51e-04 GGACAGCTGC GTTGCCTA GGCCCTGGTC chr20:1404644-1404724 40 5.51e-04 cgagctgcaa gttaccac ccctttccat chr14:62229086-62229166 19 6.56e-04 TTCGGGCTTG GTTTCCTG GGCGACCACC chr3:49966970-49967050 28 6.56e-04 CAGCTCTCCA GTCTCTAG GTGCCTCCAG chr1:12719165-12719245 33 6.56e-04 ACGAAGGACA GTCTCTAG CTGGACCTGT chr12:125473585-12547366 53 6.56e-04 GCCCACGTGG GTTCCCAG ACCACCAACT chr18:3013524-3013604 57 6.56e-04 TGAGAGCCCA ATTGCCAA AAAGGAATGT chr1:165567400-165567480 22 7.38e-04 AGCTTCAACG GTTGCTGT GGCAACAGGC chr3:129147446-129147526 31 7.38e-04 GAAGCAACCT GTTGCCGT GGCTACGGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTGCYAK MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr21:38738995-38739075 2e-05 68_[+3]_4 chr11:65951330-65951410 2e-05 20_[+3]_52 chr1:208267801-208267881 2e-05 67_[+3]_5 chr19:58874223-58874303 2e-05 64_[+3]_8 chr16:75590150-75590230 2e-05 11_[+3]_61 chr20:1305882-1305962 2e-05 54_[+3]_18 chr1:245132890-245132970 2e-05 4_[+3]_68 chr5:149893452-149893532 2e-05 37_[+3]_35 chr9:3525842-3525922 2e-05 66_[+3]_6 chr1:20335054-20335134 2e-05 70_[+3]_2 chr7:100104305-100104385 2e-05 17_[+3]_55 chr11:15988803-15988883 2e-05 16_[+3]_56 chrX:71314912-71314992 2e-05 39_[+3]_33 chr19:54684055-54684135 5e-05 32_[+3]_40 chr6:138276537-138276617 5e-05 64_[+3]_8 chr10:106113446-10611352 5e-05 54_[+3]_18 chr5:38888351-38888431 5e-05 60_[+3]_12 chr11:95149293-95149373 5e-05 41_[+3]_31 chr19:18058754-18058834 5e-05 11_[+3]_61 chr1:33546609-33546689 5e-05 50_[+3]_22 chr12:49595055-49595135 5e-05 26_[+3]_46 chr17:74449352-74449432 5e-05 16_[+3]_56 chr17:46102424-46102504 5e-05 60_[+3]_12 chr19:55690772-55690852 5e-05 59_[+3]_13 chr19:6066808-6066888 5e-05 7_[+3]_65 chr7:1577743-1577823 6.3e-05 11_[+3]_61 chr15:43803168-43803248 6.3e-05 12_[+3]_60 chr16:58529152-58529232 6.3e-05 37_[+3]_35 chr10:3916055-3916135 6.3e-05 22_[+3]_50 chr6:52285089-52285169 7.6e-05 19_[+3]_53 chr1:26459159-26459239 7.6e-05 72_[+3] chr15:72598746-72598826 7.6e-05 37_[+3]_35 chr22:30988192-30988272 9.7e-05 71_[+3]_1 chr12:100594459-10059453 9.7e-05 45_[+3]_27 chr16:89752985-89753065 9.7e-05 32_[+3]_40 chr21:44847183-44847263 9.7e-05 18_[+3]_54 chr17:19265916-19265996 9.7e-05 10_[+3]_62 chr3:171912641-171912721 9.7e-05 21_[+3]_51 chr6:37070357-37070437 0.00012 37_[+3]_35 chr11:125387199-12538727 0.00014 40_[+3]_32 chr7:32945090-32945170 0.00014 5_[+3]_67 chr19:11484380-11484460 0.00014 32_[+3]_40 chr11:66049995-66050075 0.00019 53_[+3]_19 chr5:34839192-34839272 0.00019 15_[+3]_57 chr11:102980101-10298018 0.00019 47_[+3]_25 chr14:23356070-23356150 0.00019 72_[+3] chr19:17012777-17012857 0.00019 34_[+3]_38 chr19:14117082-14117162 0.00022 50_[+3]_22 chr14:105948381-10594846 0.00022 33_[+3]_39 chr1:54821761-54821841 0.00022 21_[+3]_51 chr12:96883277-96883357 0.00022 43_[+3]_29 chr22:39615553-39615633 0.00025 26_[+3]_46 chr17:49205596-49205676 0.00025 [+3]_72 chr19:9945455-9945535 0.00025 22_[+3]_50 chr19:46981764-46981844 0.00025 48_[+3]_24 chr16:84178841-84178921 0.00034 40_[+3]_32 chr3:195163940-195164020 0.00034 54_[+3]_18 chr11:47600196-47600276 0.00034 60_[+3]_12 chr19:52693010-52693090 0.00034 51_[+3]_21 chr7:100087610-100087690 0.00034 65_[+3]_7 chr1:43613509-43613589 0.00034 10_[+3]_62 chr6:33256924-33257004 0.00039 15_[+3]_57 chr19:6110464-6110544 0.00039 39_[+3]_33 chr10:76349149-76349229 0.00039 69_[+3]_3 chr7:20346900-20346980 0.00039 33_[+3]_39 chr15:90728479-90728559 0.00039 47_[+3]_25 chr1:207752852-207752932 0.00041 9_[+3]_63 chr8:145149727-145149807 0.00047 64_[+3]_8 chr1:246760751-246760831 0.00047 55_[+3]_17 chr1:155804474-155804554 0.00047 53_[+3]_19 chr7:76025576-76025656 0.00047 61_[+3]_11 chr20:30085819-30085899 0.00047 29_[+3]_43 chr1:156456862-156456942 0.00055 47_[+3]_25 chr8:19627187-19627267 0.00055 54_[+3]_18 chr11:64902596-64902676 0.00055 51_[+3]_21 chr20:1404644-1404724 0.00055 39_[+3]_33 chr14:62229086-62229166 0.00066 18_[+3]_54 chr3:49966970-49967050 0.00066 27_[+3]_45 chr1:12719165-12719245 0.00066 32_[+3]_40 chr12:125473585-12547366 0.00066 52_[+3]_20 chr18:3013524-3013604 0.00066 56_[+3]_16 chr1:165567400-165567480 0.00074 21_[+3]_51 chr3:129147446-129147526 0.00074 30_[+3]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTGCYAK MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTTGCYAK width=8 seqs=83 chr21:38738995-38739075 ( 69) GTTGCTAT 1 chr11:65951330-65951410 ( 21) GTTGCCAT 1 chr1:208267801-208267881 ( 68) GTTGCCAT 1 chr19:58874223-58874303 ( 65) GTTGCCAT 1 chr16:75590150-75590230 ( 12) GTTGCCAT 1 chr20:1305882-1305962 ( 55) GTTGCTAT 1 chr1:245132890-245132970 ( 5) GTTGCTAT 1 chr5:149893452-149893532 ( 38) GTTGCCAT 1 chr9:3525842-3525922 ( 67) GTTGCTAT 1 chr1:20335054-20335134 ( 71) GTTGCCAT 1 chr7:100104305-100104385 ( 18) GTTGCCAT 1 chr11:15988803-15988883 ( 17) GTTGCTAT 1 chrX:71314912-71314992 ( 40) GTTGCCAT 1 chr19:54684055-54684135 ( 33) GTTGCTAG 1 chr6:138276537-138276617 ( 65) GTTGCCAG 1 chr10:106113446-10611352 ( 55) GTTGCCAG 1 chr5:38888351-38888431 ( 61) GTTGCTAG 1 chr11:95149293-95149373 ( 42) GTTGCTAG 1 chr19:18058754-18058834 ( 12) GTTGCCAG 1 chr1:33546609-33546689 ( 51) GTTGCCAG 1 chr12:49595055-49595135 ( 27) GTTGCTAG 1 chr17:74449352-74449432 ( 17) GTTGCTAG 1 chr17:46102424-46102504 ( 61) GTTGCTAG 1 chr19:55690772-55690852 ( 60) GTTGCCAG 1 chr19:6066808-6066888 ( 8) GTTGCCAG 1 chr7:1577743-1577823 ( 12) GTTTCCAT 1 chr15:43803168-43803248 ( 13) GTTTCCAT 1 chr16:58529152-58529232 ( 38) GTTTCCAT 1 chr10:3916055-3916135 ( 23) GTTTCCAT 1 chr6:52285089-52285169 ( 20) GTTACCAT 1 chr1:26459159-26459239 ( 73) GTTACCAT 1 chr15:72598746-72598826 ( 38) GTTACCAT 1 chr22:30988192-30988272 ( 72) GTTGCTAA 1 chr12:100594459-10059453 ( 46) GTTGCTAA 1 chr16:89752985-89753065 ( 33) GTTGCTAA 1 chr21:44847183-44847263 ( 19) GTTGCCAA 1 chr17:19265916-19265996 ( 11) GTTGCTAA 1 chr3:171912641-171912721 ( 22) GTTGCTAA 1 chr6:37070357-37070437 ( 38) GTTTCCAG 1 chr11:125387199-12538727 ( 41) GTTACTAG 1 chr7:32945090-32945170 ( 6) GTTACCAG 1 chr19:11484380-11484460 ( 33) GTTACCAG 1 chr11:66049995-66050075 ( 54) GTCGCCAT 1 chr5:34839192-34839272 ( 16) GTCGCCAT 1 chr11:102980101-10298018 ( 48) GTCGCCAT 1 chr14:23356070-23356150 ( 73) GTCGCCAT 1 chr19:17012777-17012857 ( 35) GTCGCCAT 1 chr19:14117082-14117162 ( 51) GTTGCTAC 1 chr14:105948381-10594846 ( 34) GTTGCTAC 1 chr1:54821761-54821841 ( 22) GTTGCTAC 1 chr12:96883277-96883357 ( 44) GTTGCCAC 1 chr22:39615553-39615633 ( 27) ATTGCCAT 1 chr17:49205596-49205676 ( 1) ATTGCCAT 1 chr19:9945455-9945535 ( 23) ATTGCTAT 1 chr19:46981764-46981844 ( 49) GTTTCCAA 1 chr16:84178841-84178921 ( 41) GTTGCCTG 1 chr3:195163940-195164020 ( 55) GTCGCTAG 1 chr11:47600196-47600276 ( 61) GTCGCCAG 1 chr19:52693010-52693090 ( 52) GTCGCTAG 1 chr7:100087610-100087690 ( 66) GTTGCCTG 1 chr1:43613509-43613589 ( 11) GTTGCCTG 1 chr6:33256924-33257004 ( 16) GTCTCCAT 1 chr19:6110464-6110544 ( 40) GTCTCTAT 1 chr10:76349149-76349229 ( 70) GTTTCTTT 1 chr7:20346900-20346980 ( 34) GTTCCCAT 1 chr15:90728479-90728559 ( 48) GTTCCCAT 1 chr1:207752852-207752932 ( 10) ATTGCTAG 1 chr8:145149727-145149807 ( 65) GTTTCCAC 1 chr1:246760751-246760831 ( 56) GTCACCAT 1 chr1:155804474-155804554 ( 54) GTTACCTT 1 chr7:76025576-76025656 ( 62) GTTACCTT 1 chr20:30085819-30085899 ( 30) GTCACTAT 1 chr1:156456862-156456942 ( 48) GTTGCTTA 1 chr8:19627187-19627267 ( 55) GTTACCAC 1 chr11:64902596-64902676 ( 52) GTTGCCTA 1 chr20:1404644-1404724 ( 40) GTTACCAC 1 chr14:62229086-62229166 ( 19) GTTTCCTG 1 chr3:49966970-49967050 ( 28) GTCTCTAG 1 chr1:12719165-12719245 ( 33) GTCTCTAG 1 chr12:125473585-12547366 ( 53) GTTCCCAG 1 chr18:3013524-3013604 ( 57) ATTGCCAA 1 chr1:165567400-165567480 ( 22) GTTGCTGT 1 chr3:129147446-129147526 ( 31) GTTGCCGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTGCYAK MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.7531 E= 4.4e-025 -174 -1302 167 -1302 -1302 -1302 -1302 237 -1302 -88 -1302 211 -48 -310 117 -30 -1302 168 -1302 -1302 -1302 101 -1302 95 211 -1302 -361 -83 -74 -188 14 128 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTGCYAK MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 83 E= 4.4e-025 0.060241 0.000000 0.939759 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.168675 0.000000 0.831325 0.144578 0.036145 0.662651 0.156627 0.000000 1.000000 0.000000 0.000000 0.000000 0.626506 0.000000 0.373494 0.867470 0.000000 0.024096 0.108434 0.120482 0.084337 0.325301 0.469880 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTGCYAK MEME-3 regular expression -------------------------------------------------------------------------------- GTTGC[CT]A[TG] -------------------------------------------------------------------------------- Time 11.43 secs. ******************************************************************************** ******************************************************************************** MOTIF TTACAAAT MEME-4 width = 8 sites = 8 llr = 95 E-value = 1.9e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTACAAAT MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::9:aaa: pos.-specific C :::9:::: probability G :::::::: matrix T aa11:::a bits 2.4 ** **** 2.1 ** **** 1.9 ** **** 1.7 *** **** Relative 1.4 *** **** Entropy 1.2 ******** (17.1 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTACAAAT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTACAAAT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr4:103266658-103266738 3 3.65e-06 CT TTACAAAT AAGGGGAGGA chr1:207752852-207752932 51 3.65e-06 ccatgacagt ttacaaat gccatggcaa chr19:39536851-39536931 30 3.65e-06 gcatgacagt ttacaaat gccatggcaa chr1:155804474-155804554 27 3.65e-06 ccatgacagt ttacaaat gccatggcaa chr10:17514954-17515034 48 3.65e-06 ccatgacagt ttacaaat gccatggcaa chr20:1404644-1404724 12 3.65e-06 ccgtgacagt ttacaaat gccatggcaa chr11:537397-537477 42 5.91e-06 CCCCGGCGAC TTATAAAT ATTTGCGTAT chr12:49595055-49595135 61 9.42e-06 GTTGGGGGTA TTTCAAAT TTCCGTTGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTACAAAT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:103266658-103266738 3.6e-06 2_[+4]_70 chr1:207752852-207752932 3.6e-06 50_[+4]_22 chr19:39536851-39536931 3.6e-06 29_[+4]_43 chr1:155804474-155804554 3.6e-06 26_[+4]_46 chr10:17514954-17515034 3.6e-06 47_[+4]_25 chr20:1404644-1404724 3.6e-06 11_[+4]_61 chr11:537397-537477 5.9e-06 41_[+4]_31 chr12:49595055-49595135 9.4e-06 60_[+4]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTACAAAT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTACAAAT width=8 seqs=8 chr4:103266658-103266738 ( 3) TTACAAAT 1 chr1:207752852-207752932 ( 51) TTACAAAT 1 chr19:39536851-39536931 ( 30) TTACAAAT 1 chr1:155804474-155804554 ( 27) TTACAAAT 1 chr10:17514954-17515034 ( 48) TTACAAAT 1 chr20:1404644-1404724 ( 12) TTACAAAT 1 chr11:537397-537477 ( 42) TTATAAAT 1 chr12:49595055-49595135 ( 61) TTTCAAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTACAAAT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.4773 E= 1.9e-001 -965 -965 -965 237 -965 -965 -965 237 212 -965 -965 -63 -965 149 -965 -63 231 -965 -965 -965 231 -965 -965 -965 231 -965 -965 -965 -965 -965 -965 237 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTACAAAT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 1.9e-001 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.875000 0.000000 0.000000 0.125000 0.000000 0.875000 0.000000 0.125000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTACAAAT MEME-4 regular expression -------------------------------------------------------------------------------- TTACAAAT -------------------------------------------------------------------------------- Time 14.58 secs. ******************************************************************************** ******************************************************************************** MOTIF ATGACAGY MEME-5 width = 8 sites = 18 llr = 171 E-value = 2.3e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATGACAGY MEME-5 Description -------------------------------------------------------------------------------- Simplified A 7::9:a:: pos.-specific C ::::a::4 probability G 3:a:::9: matrix T :a:1::16 bits 2.4 * * 2.1 * * 1.9 * * * 1.7 ***** Relative 1.4 ******* Entropy 1.2 ******** (13.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ATGACAGT consensus G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGACAGY MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:13493335-13493415 12 8.19e-06 caccacctcc atgacagt ttaccattgc chr1:207752852-207752932 43 8.19e-06 catcagcacc atgacagt ttacaaatgc chr2:43822848-43822928 32 8.19e-06 GAGTCGAGGA ATGACAGT GGGAGAAAGT chr19:39536851-39536931 22 8.19e-06 ccaccagagc atgacagt ttacaaatgc chr1:155804474-155804554 19 8.19e-06 taccagcacc atgacagt ttacaaatgc chr10:17514954-17515034 40 8.19e-06 ccccagcgcc atgacagt ttacaaatgc chr3:49966970-49967050 14 2.14e-05 CCCTCCAAAG ATGACAGC TCTCCAGTCT chr6:37070357-37070437 26 2.14e-05 CAAGGCTGCT ATGACAGC GCTCGTTTCC chr3:195869987-195870067 29 2.14e-05 CCACGCTGCA ATGACAGC CCAGAGCGTG chr6:31036713-31036793 1 3.34e-05 . GTGACAGT CAAAGCAACT chr20:1404644-1404724 4 3.34e-05 gcc gtgacagt ttacaaatgc chr19:14492968-14493048 54 3.87e-05 GAGTGAAGAA ATGACATT TGGGGCAAAA chr8:19627187-19627267 20 4.66e-05 ctactgtgtt atgtcagt ttaccactgt chr7:76025576-76025656 28 4.66e-05 ctcgtatgcc atgtcagt ttaccattgc chr1:208267801-208267881 10 6.60e-05 TTGCTGCCT GTGACAGC ATCTGTGTTG chr11:12131978-12132058 46 6.60e-05 GGCAGCGGCG GTGACAGC CGGCCCCACG chr1:211752930-211753010 67 6.60e-05 cggcggcTGT GTGACAGC TCGGCG chr8:29939952-29940032 48 7.46e-05 GCAGGCCACG ATGACATC ACACAGCCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGACAGY MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:13493335-13493415 8.2e-06 11_[+5]_61 chr1:207752852-207752932 8.2e-06 42_[+5]_30 chr2:43822848-43822928 8.2e-06 31_[+5]_41 chr19:39536851-39536931 8.2e-06 21_[+5]_51 chr1:155804474-155804554 8.2e-06 18_[+5]_54 chr10:17514954-17515034 8.2e-06 39_[+5]_33 chr3:49966970-49967050 2.1e-05 13_[+5]_59 chr6:37070357-37070437 2.1e-05 25_[+5]_47 chr3:195869987-195870067 2.1e-05 28_[+5]_44 chr6:31036713-31036793 3.3e-05 [+5]_72 chr20:1404644-1404724 3.3e-05 3_[+5]_69 chr19:14492968-14493048 3.9e-05 53_[+5]_19 chr8:19627187-19627267 4.7e-05 19_[+5]_53 chr7:76025576-76025656 4.7e-05 27_[+5]_45 chr1:208267801-208267881 6.6e-05 9_[+5]_63 chr11:12131978-12132058 6.6e-05 45_[+5]_27 chr1:211752930-211753010 6.6e-05 66_[+5]_6 chr8:29939952-29940032 7.5e-05 47_[+5]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGACAGY MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATGACAGY width=8 seqs=18 chr3:13493335-13493415 ( 12) ATGACAGT 1 chr1:207752852-207752932 ( 43) ATGACAGT 1 chr2:43822848-43822928 ( 32) ATGACAGT 1 chr19:39536851-39536931 ( 22) ATGACAGT 1 chr1:155804474-155804554 ( 19) ATGACAGT 1 chr10:17514954-17515034 ( 40) ATGACAGT 1 chr3:49966970-49967050 ( 14) ATGACAGC 1 chr6:37070357-37070437 ( 26) ATGACAGC 1 chr3:195869987-195870067 ( 29) ATGACAGC 1 chr6:31036713-31036793 ( 1) GTGACAGT 1 chr20:1404644-1404724 ( 4) GTGACAGT 1 chr19:14492968-14493048 ( 54) ATGACATT 1 chr8:19627187-19627267 ( 20) ATGTCAGT 1 chr7:76025576-76025656 ( 28) ATGTCAGT 1 chr1:208267801-208267881 ( 10) GTGACAGC 1 chr11:12131978-12132058 ( 46) GTGACAGC 1 chr1:211752930-211753010 ( 67) GTGACAGC 1 chr8:29939952-29940032 ( 48) ATGACATC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGACAGY MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8329 E= 2.3e+000 184 -1081 -8 -1081 -1081 -1081 -1081 237 -1081 -1081 176 -1081 214 -1081 -1081 -80 -1081 168 -1081 -1081 231 -1081 -1081 -1081 -1081 -1081 159 -80 -1081 32 -1081 166 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGACAGY MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 2.3e+000 0.722222 0.000000 0.277778 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.888889 0.000000 0.000000 0.111111 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.888889 0.111111 0.000000 0.388889 0.000000 0.611111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGACAGY MEME-5 regular expression -------------------------------------------------------------------------------- [AG]TGACAG[TC] -------------------------------------------------------------------------------- Time 17.71 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:6066808-6066888 1.72e-02 7_[+3(4.98e-05)]_65 chrX:71314912-71314992 5.04e-02 24_[+3(1.97e-05)]_7_[+3(1.97e-05)]_\ 33 chr20:30085819-30085899 6.41e-05 10_[+1(1.32e-05)]_37_[+1(1.32e-05)]_\ 17 chr1:21525618-21525698 6.29e-02 1_[+1(2.22e-05)]_13_[+1(2.22e-05)]_\ 13_[+1(2.22e-05)]_13_[+1(2.22e-05)]_8 chr11:15988803-15988883 3.68e-03 16_[+3(1.97e-05)]_56 chr17:7117373-7117453 3.64e-02 6_[+1(7.28e-05)]_66 chr19:11484380-11484460 2.21e-03 48_[+3(4.98e-05)]_24 chr8:125622634-125622714 1.43e-04 29_[+3(1.97e-05)]_43 chr3:171912641-171912721 8.83e-03 21_[+3(9.67e-05)]_51 chr7:100104305-100104385 3.09e-04 17_[+3(1.97e-05)]_29_[+1(1.32e-05)]_\ 18 chr1:20335054-20335134 4.25e-05 38_[+3(1.97e-05)]_24_[+3(1.97e-05)]_\ 2 chr19:46981764-46981844 2.21e-04 21_[+3(6.27e-05)]_24_[+1(8.65e-05)]_\ 19 chr19:55690772-55690852 8.84e-03 59_[+3(4.98e-05)]_13 chr19:15334362-15334442 2.31e-01 80 chr9:3525842-3525922 1.33e-04 56_[+1(8.65e-05)]_2_[+3(1.97e-05)]_\ 6 chr17:35715508-35715588 2.04e-01 27_[+2(3.00e-05)]_45 chr10:3916055-3916135 7.89e-04 22_[+3(6.27e-05)]_22_[+1(2.22e-05)]_\ 20 chr1:154178819-154178899 5.16e-02 80 chr1:156251150-156251230 3.67e-02 80 chr19:17012777-17012857 2.60e-03 9_[+1(1.32e-05)]_44_[+1(1.32e-05)]_\ 11 chr11:59436567-59436647 1.53e-01 80 chr16:759704-759784 4.12e-03 13_[+1(2.22e-05)]_59 chr19:11616646-11616726 6.63e-01 80 chr5:149893452-149893532 5.27e-03 37_[+3(1.97e-05)]_35 chr7:76025576-76025656 1.05e-05 27_[+5(4.66e-05)]_36_[+1(1.32e-05)]_\ 1 chr15:42352043-42352123 8.08e-03 13_[+1(7.28e-05)]_8_[+1(4.34e-05)]_\ 43 chr5:176884803-176884883 2.92e-02 57_[+3(4.98e-05)]_15 chr12:96883277-96883357 1.94e-02 80 chr19:9945455-9945535 1.59e-02 10_[+1(8.65e-05)]_62 chr2:232469502-232469582 2.42e-02 69_[+1(8.65e-05)]_3 chr20:1404644-1404724 1.79e-07 3_[+5(3.34e-05)]_[+4(3.65e-06)]_2_\ [+1(1.32e-05)]_25_[+1(1.32e-05)]_18 chr1:43613509-43613589 4.91e-02 80 chr2:74648747-74648827 1.18e-01 80 chr1:100817826-100817906 2.06e-01 80 chr17:49205596-49205676 2.92e-04 5_[+1(3.07e-05)]_24_[+1(1.32e-05)]_\ 35 chr1:245132890-245132970 2.60e-03 4_[+3(1.97e-05)]_68 chr5:673024-673104 1.99e-02 9_[+1(1.32e-05)]_55_[+1(1.32e-05)] chr12:13254220-13254300 3.26e-01 80 chr12:6716682-6716762 5.68e-01 80 chr17:46102424-46102504 6.12e-02 60_[+3(4.98e-05)]_12 chr16:58529152-58529232 1.17e-04 43_[+5(2.14e-05)]_1_[+3(4.98e-05)]_\ 20 chr19:13842469-13842549 2.48e-01 80 chr20:37101364-37101444 3.53e-01 80 chrX:133938031-133938111 4.76e-04 40_[+1(7.28e-05)]_32 chr7:45129089-45129169 5.34e-03 42_[+1(1.32e-05)]_30 chr7:32945090-32945170 3.06e-05 41_[+1(1.32e-05)]_31 chr17:49336684-49336764 3.80e-02 80 chr15:72598746-72598826 4.95e-03 37_[+3(7.62e-05)]_35 chr20:62258498-62258578 8.97e-01 80 chr15:90728479-90728559 9.55e-04 15_[+3(1.97e-05)]_57 chr7:20346900-20346980 2.37e-02 80 chr20:1305882-1305962 4.61e-02 54_[+3(1.97e-05)]_18 chr17:74449352-74449432 1.94e-01 16_[+3(4.98e-05)]_56 chr7:65580544-65580624 1.57e-03 34_[+2(3.00e-05)]_38 chr3:39222371-39222451 8.33e-01 80 chr11:125387199-12538727 4.32e-03 14_[+3(1.97e-05)]_58 chr12:123848092-12384817 1.84e-02 50_[+2(8.16e-05)]_22 chr22:21983621-21983701 9.14e-01 80 chr12:49595055-49595135 1.41e-04 26_[+3(4.98e-05)]_26_[+4(9.42e-06)]_\ 12 chr9:132020854-132020934 8.14e-02 32_[+2(8.16e-05)]_40 chr14:23356070-23356150 7.67e-02 80 chr19:50554343-50554423 1.10e-02 59_[+1(1.32e-05)]_13 chr20:39657119-39657199 7.68e-02 22_[+2(3.00e-05)]_50 chr17:74137371-74137451 2.88e-02 80 chr5:81046922-81047002 7.29e-02 80 chr1:54821761-54821841 4.57e-02 80 chr16:14728041-14728121 3.48e-01 80 chr17:19265916-19265996 5.03e-03 10_[+3(9.67e-05)]_62 chr2:29118229-29118309 1.35e-01 56_[+2(4.96e-05)]_16 chr19:19145297-19145377 6.44e-01 80 chr16:30959605-30959685 7.27e-05 33_[+3(1.97e-05)]_39 chr1:155164695-155164775 1.01e-02 80 chr19:17580295-17580375 1.24e-03 16_[+2(8.16e-05)]_56 chr17:4268549-4268629 3.33e-02 80 chr17:37558898-37558978 3.43e-01 80 chr10:17514954-17515034 1.42e-07 39_[+5(8.19e-06)]_[+4(3.65e-06)]_2_\ [+1(1.32e-05)]_15 chr3:195869987-195870067 1.75e-02 28_[+5(2.14e-05)]_44 chr12:54653399-54653479 4.88e-04 28_[+3(1.97e-05)]_44 chr3:50563566-50563646 1.51e-01 34_[+2(6.89e-05)]_38 chr20:30467588-30467668 3.46e-02 25_[+1(4.34e-05)]_47 chr16:88848328-88848408 8.85e-03 56_[+2(3.00e-05)]_16 chr1:156076153-156076233 3.56e-02 11_[+1(4.34e-05)]_61 chr19:55691526-55691606 4.86e-01 80 chr6:2739734-2739814 3.40e-03 27_[+1(7.28e-05)]_45 chr21:44847183-44847263 3.81e-02 18_[+3(9.67e-05)]_54 chr1:155804474-155804554 3.87e-08 18_[+5(8.19e-06)]_[+4(3.65e-06)]_2_\ [+1(1.32e-05)]_36 chr10:103893411-10389349 1.75e-01 33_[+2(3.00e-05)]_17_[+2(3.00e-05)]_\ 14 chr1:33546609-33546689 1.01e-01 50_[+3(4.98e-05)]_22 chr7:150759511-150759591 3.58e-02 40_[+2(3.00e-05)]_32 chr19:39536851-39536931 2.09e-07 21_[+5(8.19e-06)]_[+4(3.65e-06)]_2_\ [+1(1.32e-05)]_33 chr18:3013524-3013604 2.23e-04 15_[+1(1.32e-05)]_57 chr10:76349149-76349229 9.35e-04 40_[+3(1.97e-05)]_32 chr11:102980101-10298018 2.93e-02 65_[+1(7.28e-05)]_7 chr6:42013416-42013496 9.80e-03 80 chr14:106267661-10626774 6.81e-03 36_[+2(4.96e-05)]_36 chr6:37070357-37070437 2.58e-03 25_[+5(2.14e-05)]_47 chr11:44564033-44564113 3.54e-02 57_[+1(2.22e-05)]_15 chr1:193030288-193030368 1.25e-03 18_[+2(3.00e-05)]_54 chr1:211752930-211753010 3.83e-03 36_[+2(3.00e-05)]_22_[+5(6.60e-05)]_\ 6 chr15:43803168-43803248 1.06e-02 12_[+3(6.27e-05)]_34_[+3(1.97e-05)]_\ 18 chr21:43916461-43916541 5.04e-02 24_[+1(2.22e-05)]_48 chr8:124053826-124053906 4.29e-03 7_[+2(3.00e-05)]_65 chr21:33765259-33765339 2.64e-01 80 chr19:18058754-18058834 4.70e-02 11_[+3(4.98e-05)]_61 chr10:99161018-99161098 6.95e-03 40_[+2(3.00e-05)]_32 chr7:1577743-1577823 1.19e-04 11_[+3(6.27e-05)]_35_[+1(1.32e-05)]_\ 18 chr1:156052264-156052344 8.81e-01 80 chr22:39615553-39615633 1.44e-03 31_[+1(1.32e-05)]_24_[+1(1.32e-05)]_\ 9 chr7:100087610-100087690 1.33e-03 17_[+1(1.32e-05)]_44_[+1(7.28e-05)]_\ 3 chr3:38767282-38767362 1.49e-02 80 chr17:4635084-4635164 2.92e-02 71_[+2(6.89e-05)]_1 chr16:4784800-4784880 3.58e-05 49_[+3(1.97e-05)]_23 chr3:167098081-167098161 3.06e-02 54_[+1(2.22e-05)]_18 chr1:246760751-246760831 6.53e-02 80 chr11:76758795-76758875 1.29e-03 27_[+3(1.97e-05)]_45 chr1:26459159-26459239 1.77e-04 14_[+1(2.22e-05)]_24_[+1(1.32e-05)]_\ 18_[+3(7.62e-05)] chr11:67008700-67008780 6.23e-02 24_[+2(3.00e-05)]_48 chr6:52285089-52285169 3.45e-02 19_[+3(7.62e-05)]_53 chr1:151682817-151682897 2.39e-02 27_[+1(1.32e-05)]_45 chr15:41407826-41407906 8.82e-02 6_[+2(8.16e-05)]_52_[+2(4.96e-05)]_\ 6 chr11:95149293-95149373 4.59e-02 41_[+3(4.98e-05)]_6_[+3(4.98e-05)]_\ 17 chr16:67891920-67892000 1.43e-01 80 chr1:230562411-230562491 5.28e-01 80 chr11:64684780-64684860 9.03e-01 80 chr19:59084191-59084271 1.77e-01 80 chr8:145149727-145149807 8.96e-02 80 chr16:75590150-75590230 2.01e-02 11_[+3(1.97e-05)]_61 chr14:105948381-10594846 8.26e-04 14_[+1(3.07e-05)]_58 chr19:1864242-1864322 2.89e-01 80 chr6:31036713-31036793 1.91e-04 [+5(3.34e-05)]_24_[+1(1.32e-05)]_40 chr19:5802424-5802504 3.64e-03 80 chr1:2574707-2574787 9.14e-02 80 chr19:18228600-18228680 4.74e-01 80 chr2:241771917-241771997 9.08e-02 80 chr9:131038315-131038395 2.99e-01 80 chr19:58874223-58874303 3.08e-02 64_[+3(1.97e-05)]_8 chr16:89752985-89753065 2.71e-02 32_[+3(9.67e-05)]_40 chr9:130856720-130856800 2.12e-03 53_[+1(1.32e-05)]_19 chr16:58160964-58161044 1.43e-04 35_[+2(8.16e-05)]_37 chr2:202113333-202113413 7.34e-02 80 chr2:43822848-43822928 6.60e-06 14_[+2(3.00e-05)]_9_[+5(8.19e-06)]_\ 41 chr10:11916869-11916949 5.03e-02 49_[+2(3.00e-05)]_23 chr3:47913038-47913118 9.83e-02 80 chr5:34839192-34839272 2.69e-03 64_[+1(1.32e-05)]_8 chr12:53689013-53689093 3.50e-02 32_[+2(3.00e-05)]_40 chr11:12131978-12132058 1.95e-02 45_[+5(6.60e-05)]_27 chr12:125473585-12547366 3.56e-03 44_[+2(3.00e-05)]_28 chr11:66049995-66050075 2.45e-03 12_[+3(1.97e-05)]_60 chr22:31460091-31460171 3.73e-02 80 chrX:153991783-153991863 2.58e-02 16_[+2(3.00e-05)]_56 chr11:537397-537477 4.87e-02 41_[+4(5.91e-06)]_31 chr21:46961693-46961773 1.48e-01 80 chr7:129142266-129142346 2.35e-01 33_[+1(7.28e-05)]_39 chr20:8000462-8000542 1.10e-01 80 chr5:38888351-38888431 1.01e-03 32_[+2(6.89e-05)]_20_[+3(4.98e-05)]_\ 12 chr12:25348052-25348132 2.59e-01 80 chr5:132388490-132388570 2.15e-01 80 chr19:10806565-10806645 1.50e-01 80 chr11:64902596-64902676 3.37e-01 80 chr6:144020052-144020132 1.77e-02 4_[+1(4.34e-05)]_68 chr8:29939952-29940032 1.10e-02 27_[+1(7.28e-05)]_12_[+5(7.46e-05)]_\ 25 chr7:100273237-100273317 7.06e-03 80 chr16:58283798-58283878 2.38e-01 80 chr19:2236286-2236366 7.42e-01 80 chr17:72667509-72667589 5.71e-01 80 chr19:52693010-52693090 2.87e-01 80 chr17:71088828-71088908 1.83e-01 19_[+2(6.89e-05)]_53 chr12:101673889-10167396 6.05e-02 80 chr2:172289924-172290004 3.14e-02 25_[+2(3.00e-05)]_47 chr19:46296100-46296180 4.90e-01 80 chr1:12719165-12719245 2.92e-03 80 chr3:49966970-49967050 1.38e-04 13_[+5(2.14e-05)]_25_[+2(3.00e-05)]_\ 26 chr17:33307428-33307508 2.28e-02 29_[+2(3.00e-05)]_43 chr8:30515792-30515872 1.32e-01 72_[+1(7.28e-05)] chr1:33501812-33501892 1.49e-02 37_[+2(4.96e-05)]_35 chrX:48326752-48326832 2.71e-02 45_[+2(8.16e-05)]_27 chr16:88923256-88923336 2.31e-02 26_[+1(1.32e-05)]_46 chr17:41132517-41132597 8.69e-04 23_[+3(1.97e-05)]_49 chr1:208267801-208267881 1.09e-05 9_[+5(6.60e-05)]_6_[+3(1.97e-05)]_\ 36_[+3(1.97e-05)]_5 chr4:128554025-128554105 1.26e-02 15_[+1(7.28e-05)]_57 chr1:207752852-207752932 4.23e-08 42_[+5(8.19e-06)]_[+4(3.65e-06)]_2_\ [+1(1.32e-05)]_12 chr14:62229086-62229166 4.02e-01 80 chr7:65541383-65541463 1.72e-02 37_[+2(4.96e-05)]_35 chr15:85143684-85143764 2.17e-01 80 chr15:85524104-85524184 1.84e-01 80 chr5:154317281-154317361 3.35e-02 28_[+2(3.00e-05)]_44 chr20:61847594-61847674 7.85e-01 80 chr19:14492968-14493048 2.17e-03 53_[+5(3.87e-05)]_19 chr3:183967308-183967388 2.64e-02 53_[+2(4.96e-05)]_19 chr19:6110464-6110544 1.25e-01 80 chr10:106113446-10611352 2.26e-03 54_[+3(4.98e-05)]_18 chr20:50157925-50158005 2.73e-01 80 chr1:32254231-32254311 4.38e-02 38_[+1(2.22e-05)]_34 chr15:101142446-10114252 2.25e-02 80 chr5:175815565-175815645 4.49e-01 80 chr11:47600196-47600276 2.30e-02 80 chr19:2151823-2151903 6.13e-02 66_[+2(3.00e-05)]_6 chr16:30538660-30538740 2.03e-02 17_[+3(9.67e-05)]_55 chr3:42814720-42814800 7.99e-03 22_[+1(7.28e-05)]_50 chr16:69760382-69760462 3.73e-01 80 chr8:19627187-19627267 1.20e-05 19_[+5(4.66e-05)]_10_[+1(1.32e-05)]_\ 24_[+1(1.32e-05)]_3 chr12:100594459-10059453 1.03e-01 45_[+3(9.67e-05)]_27 chr9:132175989-132176069 7.53e-04 46_[+3(1.97e-05)]_26 chr8:144513006-144513086 9.53e-03 16_[+1(1.32e-05)]_56 chr3:129147446-129147526 5.81e-01 80 chr8:126010733-126010813 2.49e-01 80 chr6:138276537-138276617 3.08e-04 36_[+2(6.89e-05)]_20_[+3(4.98e-05)]_\ 8 chr4:57302511-57302591 2.55e-01 80 chr15:69706475-69706555 1.25e-01 80 chr1:165567400-165567480 3.09e-01 80 chr16:89766682-89766762 1.08e-03 28_[+1(1.32e-05)]_44 chr1:156456862-156456942 5.29e-03 66_[+1(7.28e-05)]_6 chr17:1953211-1953291 1.37e-01 80 chr3:195163940-195164020 4.55e-01 80 chr4:103266658-103266738 7.29e-04 2_[+4(3.65e-06)]_70 chr19:18268124-18268204 4.16e-02 54_[+2(3.00e-05)]_18 chr16:3202288-3202368 3.26e-02 5_[+2(8.16e-05)]_67 chr19:48972160-48972240 8.62e-02 80 chr3:13493335-13493415 2.86e-04 11_[+5(8.19e-06)]_61 chr15:42787727-42787807 4.38e-01 80 chr1:118727845-118727925 1.56e-01 80 chr22:30988192-30988272 4.09e-02 71_[+3(9.67e-05)]_1 chr6:43142468-43142548 4.77e-02 80 chr19:41903234-41903314 2.05e-02 80 chr7:128432954-128433034 1.12e-02 27_[+2(8.16e-05)]_45 chr19:54684055-54684135 3.23e-03 32_[+3(4.98e-05)]_40 chr11:116969269-11696934 2.01e-03 39_[+1(1.32e-05)]_33 chr7:100450172-100450252 1.85e-01 80 chr11:65951330-65951410 3.11e-05 20_[+3(1.97e-05)]_29_[+1(1.32e-05)]_\ 15 chr1:245026238-245026318 3.48e-02 54_[+2(4.96e-05)]_18 chr1:44495869-44495949 4.58e-02 72_[+2(4.96e-05)] chr11:71159687-71159767 5.85e-02 33_[+2(3.00e-05)]_39 chr14:103995528-10399560 2.50e-01 80 chr17:25853716-25853796 2.55e-01 80 chr2:183989580-183989660 4.00e-02 38_[+2(6.89e-05)]_34 chr6:33256924-33257004 1.98e-02 80 chr8:144025186-144025266 7.98e-03 80 chr19:47940096-47940176 2.23e-02 80 chr12:76478527-76478607 7.48e-02 80 chr16:10837604-10837684 3.06e-01 80 chr11:122932217-12293229 1.79e-01 64_[+2(6.89e-05)]_8 chr21:38738995-38739075 6.16e-03 68_[+3(1.97e-05)]_4 chr19:14117082-14117162 1.00e-01 80 chr1:166459381-166459461 3.91e-02 20_[+2(3.00e-05)]_52 chr7:152372584-152372664 1.11e-01 69_[+2(6.89e-05)]_3 chr16:84178841-84178921 1.67e-01 80 chr20:43992103-43992183 5.67e-03 15_[+3(1.97e-05)]_57 chr19:54370838-54370918 1.11e-01 80 chr6:30813188-30813268 3.24e-01 80 chr1:226186348-226186428 1.06e-01 39_[+2(8.16e-05)]_33 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n09.farnam.hpc.yale.internal ********************************************************************************