******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/MTA3.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr19:14225026-14225106 1.0000 80 chr1:180123667-180123747 1.0000 80 chr19:17462795-17462875 1.0000 80 chr16:85598206-85598286 1.0000 80 chr17:79093593-79093673 1.0000 80 chr8:133687843-133687923 1.0000 80 chr6:139456075-139456155 1.0000 80 chr17:78965593-78965673 1.0000 80 chr6:26923988-26924068 1.0000 80 chr11:111742226-11174230 1.0000 80 chr1:116961243-116961323 1.0000 80 chr14:102785971-10278605 1.0000 80 chr7:89874385-89874465 1.0000 80 chr5:138882739-138882819 1.0000 80 chr5:154317807-154317887 1.0000 80 chr1:149783905-149783985 1.0000 80 chr2:131966830-131966910 1.0000 80 chr8:100905952-100906032 1.0000 80 chr19:7985159-7985239 1.0000 80 chr6:150067727-150067807 1.0000 80 chr2:19548155-19548235 1.0000 80 chr19:50979524-50979604 1.0000 80 chr12:110338023-11033810 1.0000 80 chr18:10525926-10526006 1.0000 80 chr9:69065398-69065478 1.0000 80 chr6:64282310-64282390 1.0000 80 chr14:54976526-54976606 1.0000 80 chr3:141594901-141594981 1.0000 80 chr17:80325981-80326061 1.0000 80 chr1:145516238-145516318 1.0000 80 chr17:80709817-80709897 1.0000 80 chr2:74781524-74781604 1.0000 80 chr9:68726365-68726445 1.0000 80 chr10:104192456-10419253 1.0000 80 chr17:76554566-76554646 1.0000 80 chr14:50319605-50319685 1.0000 80 chr1:4052279-4052359 1.0000 80 chr19:17622838-17622918 1.0000 80 chr2:75873790-75873870 1.0000 80 chr11:77185393-77185473 1.0000 80 chr12:110906116-11090619 1.0000 80 chr11:64937635-64937715 1.0000 80 chr21:43430348-43430428 1.0000 80 chr8:22927837-22927917 1.0000 80 chr13:41635555-41635635 1.0000 80 chr17:20771728-20771808 1.0000 80 chr11:9025537-9025617 1.0000 80 chr4:147096761-147096841 1.0000 80 chr17:30469336-30469416 1.0000 80 chr20:43160410-43160490 1.0000 80 chr22:48027340-48027420 1.0000 80 chr6:150255537-150255617 1.0000 80 chr6:26322377-26322457 1.0000 80 chrX:153607681-153607761 1.0000 80 chr9:125590975-125591055 1.0000 80 chr2:15701452-15701532 1.0000 80 chr1:27286906-27286986 1.0000 80 chr19:50862202-50862282 1.0000 80 chr12:92028603-92028683 1.0000 80 chr12:58138360-58138440 1.0000 80 chr17:9479167-9479247 1.0000 80 chr17:29158878-29158958 1.0000 80 chr20:34203689-34203769 1.0000 80 chr2:2577843-2577923 1.0000 80 chr1:32573586-32573666 1.0000 80 chr4:31998905-31998985 1.0000 80 chr3:49726938-49727018 1.0000 80 chr5:71404820-71404900 1.0000 80 chr15:101142306-10114238 1.0000 80 chr10:79803455-79803535 1.0000 80 chr20:42939757-42939837 1.0000 80 chr6:27775820-27775900 1.0000 80 chr14:102176617-10217669 1.0000 80 chr15:30917902-30917982 1.0000 80 chr8:101734327-101734407 1.0000 80 chr2:28114123-28114203 1.0000 80 chr6:26033836-26033916 1.0000 80 chr4:119512854-119512934 1.0000 80 chr19:1269245-1269325 1.0000 80 chr20:25388238-25388318 1.0000 80 chr14:36278534-36278614 1.0000 80 chr11:47198643-47198723 1.0000 80 chr2:30454349-30454429 1.0000 80 chr1:236451604-236451684 1.0000 80 chr17:21515899-21515979 1.0000 80 chr6:26158146-26158226 1.0000 80 chr1:95538480-95538560 1.0000 80 chr10:127585003-12758508 1.0000 80 chr19:6361576-6361656 1.0000 80 chr6:143381664-143381744 1.0000 80 chr15:31284106-31284186 1.0000 80 chr2:62132693-62132773 1.0000 80 chr17:6544159-6544239 1.0000 80 chr9:137000981-137001061 1.0000 80 chr11:18610229-18610309 1.0000 80 chr8:144512931-144513011 1.0000 80 chr15:101792133-10179221 1.0000 80 chr11:74303527-74303607 1.0000 80 chr10:126107510-12610759 1.0000 80 chr16:53468314-53468394 1.0000 80 chr22:39097054-39097134 1.0000 80 chr16:48278127-48278207 1.0000 80 chr2:85843138-85843218 1.0000 80 chr2:207630229-207630309 1.0000 80 chr19:33572015-33572095 1.0000 80 chr6:34664733-34664813 1.0000 80 chr12:132434414-13243449 1.0000 80 chr17:42785957-42786037 1.0000 80 chr1:110198708-110198788 1.0000 80 chr8:143484679-143484759 1.0000 80 chr14:55738788-55738868 1.0000 80 chr4:187125480-187125560 1.0000 80 chr17:2615115-2615195 1.0000 80 chr11:14521448-14521528 1.0000 80 chr14:23388116-23388196 1.0000 80 chr5:33440764-33440844 1.0000 80 chr7:75795866-75795946 1.0000 80 chr1:224180315-224180395 1.0000 80 chr22:32808250-32808330 1.0000 80 chr19:4969015-4969095 1.0000 80 chr17:28619003-28619083 1.0000 80 chr20:3140559-3140639 1.0000 80 chr9:27573808-27573888 1.0000 80 chr19:1940700-1940780 1.0000 80 chr5:95297765-95297845 1.0000 80 chr1:166136111-166136191 1.0000 80 chr12:124068901-12406898 1.0000 80 chr1:149858303-149858383 1.0000 80 chr9:139010516-139010596 1.0000 80 chr8:27695363-27695443 1.0000 80 chrX:119737692-119737772 1.0000 80 chr16:23464435-23464515 1.0000 80 chr1:71513469-71513549 1.0000 80 chr18:43547309-43547389 1.0000 80 chr12:64616287-64616367 1.0000 80 chr11:842751-842831 1.0000 80 chr1:75198797-75198877 1.0000 80 chr16:66968373-66968453 1.0000 80 chr6:52529155-52529235 1.0000 80 chr3:49449580-49449660 1.0000 80 chr19:36605805-36605885 1.0000 80 chr1:236687211-236687291 1.0000 80 chr14:65453538-65453618 1.0000 80 chr7:100034319-100034399 1.0000 80 chr3:195414158-195414238 1.0000 80 chr7:100797735-100797815 1.0000 80 chr2:110970108-110970188 1.0000 80 chr15:75230505-75230585 1.0000 80 chr6:30783322-30783402 1.0000 80 chr2:232826326-232826406 1.0000 80 chr20:50827056-50827136 1.0000 80 chr4:6675098-6675178 1.0000 80 chr16:89989684-89989764 1.0000 80 chr19:44037272-44037352 1.0000 80 chr4:1714071-1714151 1.0000 80 chr12:127544995-12754507 1.0000 80 chrX:23925898-23925978 1.0000 80 chr13:28024641-28024721 1.0000 80 chr15:42066644-42066724 1.0000 80 chr2:73298792-73298872 1.0000 80 chr20:3451583-3451663 1.0000 80 chr1:3817773-3817853 1.0000 80 chr1:192778082-192778162 1.0000 80 chr17:68125036-68125116 1.0000 80 chr6:26124251-26124331 1.0000 80 chr19:15530041-15530121 1.0000 80 chr19:3479527-3479607 1.0000 80 chr6:30843317-30843397 1.0000 80 chr10:102027442-10202752 1.0000 80 chr8:21967177-21967257 1.0000 80 chr3:70048825-70048905 1.0000 80 chr4:79550573-79550653 1.0000 80 chr19:52430647-52430727 1.0000 80 chr2:68384646-68384726 1.0000 80 chr15:49338690-49338770 1.0000 80 chr12:27396983-27397063 1.0000 80 chr17:1196891-1196971 1.0000 80 chr1:32801859-32801939 1.0000 80 chr11:329574-329654 1.0000 80 chr1:156698629-156698709 1.0000 80 chr7:98476464-98476544 1.0000 80 chr10:45474269-45474349 1.0000 80 chr16:56574241-56574321 1.0000 80 chr10:104613995-10461407 1.0000 80 chr15:91565846-91565926 1.0000 80 chr17:27071464-27071544 1.0000 80 chr19:17728225-17728305 1.0000 80 chr3:182817265-182817345 1.0000 80 chr13:45694521-45694601 1.0000 80 chr13:108870619-10887069 1.0000 80 chr2:181556644-181556724 1.0000 80 chr11:32456159-32456239 1.0000 80 chr4:142253801-142253881 1.0000 80 chr16:3550900-3550980 1.0000 80 chr12:120933762-12093384 1.0000 80 chr5:137805250-137805330 1.0000 80 chr1:100828554-100828634 1.0000 80 chr1:24969422-24969502 1.0000 80 chr19:50837490-50837570 1.0000 80 chr12:1100035-1100115 1.0000 80 chr5:176944045-176944125 1.0000 80 chr12:120972098-12097217 1.0000 80 chr12:12764730-12764810 1.0000 80 chr2:3381546-3381626 1.0000 80 chr2:108363426-108363506 1.0000 80 chr10:135122446-13512252 1.0000 80 chr20:354209-354289 1.0000 80 chr15:89010906-89010986 1.0000 80 chr5:54603665-54603745 1.0000 80 chr8:112052655-112052735 1.0000 80 chr6:32097867-32097947 1.0000 80 chr12:4714019-4714099 1.0000 80 chr14:90863291-90863371 1.0000 80 chr2:85581759-85581839 1.0000 80 chr5:52856402-52856482 1.0000 80 chr10:35379585-35379665 1.0000 80 chr19:3670319-3670399 1.0000 80 chr19:45971090-45971170 1.0000 80 chr13:26760690-26760770 1.0000 80 chr16:80574736-80574816 1.0000 80 chr20:33543419-33543499 1.0000 80 chr6:30640793-30640873 1.0000 80 chr19:5791233-5791313 1.0000 80 chr20:29611656-29611736 1.0000 80 chr13:21714580-21714660 1.0000 80 chr9:124855563-124855643 1.0000 80 chr16:50058960-50059040 1.0000 80 chr19:17623046-17623126 1.0000 80 chr11:61735103-61735183 1.0000 80 chr10:74451838-74451918 1.0000 80 chr8:145682449-145682529 1.0000 80 chr1:165600158-165600238 1.0000 80 chr19:39971334-39971414 1.0000 80 chr17:42264245-42264325 1.0000 80 chr18:55297441-55297521 1.0000 80 chr8:68256189-68256269 1.0000 80 chr1:8086384-8086464 1.0000 80 chr13:103498182-10349826 1.0000 80 chr22:21011312-21011392 1.0000 80 chr20:39657354-39657434 1.0000 80 chr16:30064322-30064402 1.0000 80 chr2:46656288-46656368 1.0000 80 chr1:118148596-118148676 1.0000 80 chr11:116643659-11664373 1.0000 80 chr11:62446600-62446680 1.0000 80 chr2:200324385-200324465 1.0000 80 chr19:8226149-8226229 1.0000 80 chr16:19079270-19079350 1.0000 80 chr17:79650776-79650856 1.0000 80 chr19:2051263-2051343 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_MTA3/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/MTA3.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.186 C 0.306 G 0.312 T 0.196 Background letter frequencies (from file dataset with add-one prior applied): A 0.186 C 0.306 G 0.312 T 0.196 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGACGTCA MEME-1 width = 8 sites = 47 llr = 437 E-value = 1.6e-034 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGACGTCA MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::9:1::9 pos.-specific C :::8::9: probability G :91:9::: matrix T a::2:a:: bits 2.4 * 2.2 * * 1.9 * * * * 1.7 * * * * Relative 1.5 * * *** Entropy 1.2 ******** (13.4 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGACGTCA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr16:56574241-56574321 42 1.21e-05 gtgaaactac tgacgtca gctgatcgga chr12:27396983-27397063 66 1.21e-05 GTGGTGCGTA TGACGTCA GGGCGAG chr8:21967177-21967257 33 1.21e-05 GCTCCGACGG TGACGTCA TCTTTCCTGC chr5:95297765-95297845 19 1.21e-05 TAATCATGTC TGACGTCA CGTCTGGTCG chr19:1940700-1940780 73 1.21e-05 CGCCCGTCCG TGACGTCA chr1:224180315-224180395 31 1.21e-05 CCCGCCCTTG TGACGTCA CGGAAGGCGC chr7:75795866-75795946 71 1.21e-05 CCCGCGCCTG TGACGTCA GC chr14:23388116-23388196 12 1.21e-05 TTTCTGCCCG TGACGTCA GGGGGGAGGC chr14:55738788-55738868 61 1.21e-05 CGTGTGTCTG TGACGTCA GAAGATGGGT chr22:39097054-39097134 19 1.21e-05 GACGTAAGTC TGACGTCA TCGGCACCGG chr14:36278534-36278614 31 1.21e-05 AACCGCCTTC TGACGTCA AGAGTTCTTG chr4:119512854-119512934 11 1.21e-05 GCGCCCTCCG TGACGTCA CAAGGGCGCG chr2:28114123-28114203 48 1.21e-05 TTCCGTTCCA TGACGTCA GCAGGGCACA chr20:34203689-34203769 63 1.21e-05 GGCTCCTCTG TGACGTCA GCAGCCGGCC chr19:50862202-50862282 30 1.21e-05 AACCGTCATA TGACGTCA CTATGGCGTC chr11:77185393-77185473 54 1.21e-05 GCTTGCTGCG TGACGTCA TCGCGTCGCG chr2:74781524-74781604 55 1.21e-05 CTTGGGCATA TGACGTCA CGCGCAGCCA chr19:50979524-50979604 7 1.21e-05 GCACTG TGACGTCA TGATGCGGAG chr2:19548155-19548235 54 1.21e-05 GAGGCCTCTG TGACGTCA CGGTGTCTGC chr6:139456075-139456155 2 1.21e-05 A TGACGTCA CTCGAGGTGG chr19:17462795-17462875 14 1.21e-05 CATCTCGGTG TGACGTCA TGCCAAGTTC chr16:19079270-19079350 47 1.99e-05 CCCTGTGCAG TGATGTCA CGGCAGGTGC chr20:354209-354289 18 1.99e-05 cttaaactag tgatgtca ctgctctgag chr19:17728225-17728305 6 1.99e-05 GTCCT TGATGTCA AAGACATTCC chr17:1196891-1196971 70 1.99e-05 ctgggtttga tgatgtca tga chr2:2577843-2577923 55 1.99e-05 ggtgaggtag tgatgtca tagtgacgtg chr1:4052279-4052359 10 1.99e-05 tcatagggg tgatgtca aaggggagat chr17:79093593-79093673 53 1.99e-05 GCTCCTCCCA TGATGTCA CACATTAGGC chr8:145682449-145682529 52 2.71e-05 CCACAGGGGA TGACATCA TGTGGTGACA chr16:89989684-89989764 2 2.71e-05 G TGACATCA GCCGATGCGA chr6:150255537-150255617 32 2.71e-05 GAGACAATTG TGACATCA TGGTGGATGA chr17:76554566-76554646 30 2.71e-05 CATGGGTGGA TGACATCA CCCTCATGGG chr20:50827056-50827136 23 3.45e-05 aggacgtgtc tgacgtaa ctgctacgct chr1:24969422-24969502 41 5.10e-05 GAAGGATGGG TCACGTCA CATTGCGCGA chr15:101792133-10179221 22 5.10e-05 CAGGAGCCCC TCACGTCA CGCACGGCGC chr19:50837490-50837570 49 7.13e-05 TACATCACTG TGGCGTCA TTATGACGGA chr19:6361576-6361656 44 7.13e-05 GGGGCCCGGG TGGCGTCA TGCAGGTACC chr12:58138360-58138440 39 7.13e-05 AACAAAACAA TGGCGTCA TCGTGAGGTC chr17:42264245-42264325 21 7.89e-05 AGAATACCTT TTACGTCA GCCCGTCTTA chr20:39657354-39657434 58 1.18e-04 CCGCGAGCGC TGACGTCG CCGACGTGTT chr19:5791233-5791313 24 1.18e-04 GTCGTTCCAA TGACGCCA TTGCTCGCTC chr8:101734327-101734407 53 1.18e-04 CCCGCGCGTC TGACGCCA GGGCCCCTAC chr11:9025537-9025617 51 1.18e-04 TAGCCGAGCG TGACGTCG CGGGGAGCAG chr6:34664733-34664813 9 1.30e-04 TCCCCGCG TGACCTCA CCGCTGCGGG chr1:156698629-156698709 73 1.60e-04 TCGCGACCTG TGACGTCT chr17:68125036-68125116 43 1.60e-04 tgtctcagtc tgatgtaa ctgctacgca chr10:79803455-79803535 26 1.60e-04 TGTATGACTG TGACGTGA TAGAAATTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:56574241-56574321 1.2e-05 41_[+1]_31 chr12:27396983-27397063 1.2e-05 65_[+1]_7 chr8:21967177-21967257 1.2e-05 32_[+1]_40 chr5:95297765-95297845 1.2e-05 18_[+1]_54 chr19:1940700-1940780 1.2e-05 72_[+1] chr1:224180315-224180395 1.2e-05 30_[+1]_42 chr7:75795866-75795946 1.2e-05 70_[+1]_2 chr14:23388116-23388196 1.2e-05 11_[+1]_61 chr14:55738788-55738868 1.2e-05 60_[+1]_12 chr22:39097054-39097134 1.2e-05 18_[+1]_54 chr14:36278534-36278614 1.2e-05 30_[+1]_42 chr4:119512854-119512934 1.2e-05 10_[+1]_62 chr2:28114123-28114203 1.2e-05 47_[+1]_25 chr20:34203689-34203769 1.2e-05 62_[+1]_10 chr19:50862202-50862282 1.2e-05 29_[+1]_43 chr11:77185393-77185473 1.2e-05 53_[+1]_19 chr2:74781524-74781604 1.2e-05 54_[+1]_18 chr19:50979524-50979604 1.2e-05 6_[+1]_66 chr2:19548155-19548235 1.2e-05 53_[+1]_19 chr6:139456075-139456155 1.2e-05 1_[+1]_71 chr19:17462795-17462875 1.2e-05 13_[+1]_59 chr16:19079270-19079350 2e-05 46_[+1]_26 chr20:354209-354289 2e-05 17_[+1]_55 chr19:17728225-17728305 2e-05 5_[+1]_67 chr17:1196891-1196971 2e-05 69_[+1]_3 chr2:2577843-2577923 2e-05 54_[+1]_18 chr1:4052279-4052359 2e-05 9_[+1]_63 chr17:79093593-79093673 2e-05 52_[+1]_20 chr8:145682449-145682529 2.7e-05 51_[+1]_21 chr16:89989684-89989764 2.7e-05 1_[+1]_71 chr6:150255537-150255617 2.7e-05 31_[+1]_41 chr17:76554566-76554646 2.7e-05 29_[+1]_43 chr20:50827056-50827136 3.4e-05 22_[+1]_50 chr1:24969422-24969502 5.1e-05 40_[+1]_32 chr15:101792133-10179221 5.1e-05 21_[+1]_51 chr19:50837490-50837570 7.1e-05 48_[+1]_24 chr19:6361576-6361656 7.1e-05 43_[+1]_29 chr12:58138360-58138440 7.1e-05 38_[+1]_34 chr17:42264245-42264325 7.9e-05 20_[+1]_52 chr20:39657354-39657434 0.00012 57_[+1]_15 chr19:5791233-5791313 0.00012 23_[+1]_49 chr8:101734327-101734407 0.00012 52_[+1]_20 chr11:9025537-9025617 0.00012 50_[+1]_22 chr6:34664733-34664813 0.00013 8_[+1]_64 chr1:156698629-156698709 0.00016 72_[+1] chr17:68125036-68125116 0.00016 42_[+1]_30 chr10:79803455-79803535 0.00016 25_[+1]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGACGTCA width=8 seqs=47 chr16:56574241-56574321 ( 42) TGACGTCA 1 chr12:27396983-27397063 ( 66) TGACGTCA 1 chr8:21967177-21967257 ( 33) TGACGTCA 1 chr5:95297765-95297845 ( 19) TGACGTCA 1 chr19:1940700-1940780 ( 73) TGACGTCA 1 chr1:224180315-224180395 ( 31) TGACGTCA 1 chr7:75795866-75795946 ( 71) TGACGTCA 1 chr14:23388116-23388196 ( 12) TGACGTCA 1 chr14:55738788-55738868 ( 61) TGACGTCA 1 chr22:39097054-39097134 ( 19) TGACGTCA 1 chr14:36278534-36278614 ( 31) TGACGTCA 1 chr4:119512854-119512934 ( 11) TGACGTCA 1 chr2:28114123-28114203 ( 48) TGACGTCA 1 chr20:34203689-34203769 ( 63) TGACGTCA 1 chr19:50862202-50862282 ( 30) TGACGTCA 1 chr11:77185393-77185473 ( 54) TGACGTCA 1 chr2:74781524-74781604 ( 55) TGACGTCA 1 chr19:50979524-50979604 ( 7) TGACGTCA 1 chr2:19548155-19548235 ( 54) TGACGTCA 1 chr6:139456075-139456155 ( 2) TGACGTCA 1 chr19:17462795-17462875 ( 14) TGACGTCA 1 chr16:19079270-19079350 ( 47) TGATGTCA 1 chr20:354209-354289 ( 18) TGATGTCA 1 chr19:17728225-17728305 ( 6) TGATGTCA 1 chr17:1196891-1196971 ( 70) TGATGTCA 1 chr2:2577843-2577923 ( 55) TGATGTCA 1 chr1:4052279-4052359 ( 10) TGATGTCA 1 chr17:79093593-79093673 ( 53) TGATGTCA 1 chr8:145682449-145682529 ( 52) TGACATCA 1 chr16:89989684-89989764 ( 2) TGACATCA 1 chr6:150255537-150255617 ( 32) TGACATCA 1 chr17:76554566-76554646 ( 30) TGACATCA 1 chr20:50827056-50827136 ( 23) TGACGTAA 1 chr1:24969422-24969502 ( 41) TCACGTCA 1 chr15:101792133-10179221 ( 22) TCACGTCA 1 chr19:50837490-50837570 ( 49) TGGCGTCA 1 chr19:6361576-6361656 ( 44) TGGCGTCA 1 chr12:58138360-58138440 ( 39) TGGCGTCA 1 chr17:42264245-42264325 ( 21) TTACGTCA 1 chr20:39657354-39657434 ( 58) TGACGTCG 1 chr19:5791233-5791313 ( 24) TGACGCCA 1 chr8:101734327-101734407 ( 53) TGACGCCA 1 chr11:9025537-9025617 ( 51) TGACGTCG 1 chr6:34664733-34664813 ( 9) TGACCTCA 1 chr1:156698629-156698709 ( 73) TGACGTCT 1 chr17:68125036-68125116 ( 43) TGATGTAA 1 chr10:79803455-79803535 ( 26) TGACGTGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.68137 E= 1.6e-034 -1220 -1220 -1220 235 -1220 -284 158 -320 233 -1220 -229 -1220 -1220 144 -1220 -20 -113 -384 152 -1220 -1220 -284 -1220 229 -213 161 -387 -1220 233 -1220 -287 -320 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 47 E= 1.6e-034 0.000000 0.000000 0.000000 1.000000 0.000000 0.042553 0.936170 0.021277 0.936170 0.000000 0.063830 0.000000 0.000000 0.829787 0.000000 0.170213 0.085106 0.021277 0.893617 0.000000 0.000000 0.042553 0.000000 0.957447 0.042553 0.936170 0.021277 0.000000 0.936170 0.000000 0.042553 0.021277 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-1 regular expression -------------------------------------------------------------------------------- TGACGTCA -------------------------------------------------------------------------------- Time 4.92 secs. ******************************************************************************** ******************************************************************************** MOTIF TATAAAAR MEME-2 width = 8 sites = 31 llr = 278 E-value = 1.8e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATAAAAR MEME-2 Description -------------------------------------------------------------------------------- Simplified A 38:a7973 pos.-specific C :::::::: probability G :::::115 matrix T 72a:3:21 bits 2.4 * 2.2 ** 1.9 ** * 1.7 ***** Relative 1.5 ****** Entropy 1.2 ******* (12.9 bits) 1.0 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TATAAAAG consensus AT T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATAAAAR MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:70048825-70048905 30 4.26e-06 aacctgggcc tataaaaa ccgccccccg chr3:49449580-49449660 34 4.26e-06 ACTCCGGGGC TATAAAAG ACCTGGTTGC chr1:236451604-236451684 38 5.94e-06 caagccgaac tataaaat ccagcgcact chr2:181556644-181556724 63 1.45e-05 caggtaagag aataaaag caggctgccc chr4:6675098-6675178 47 1.45e-05 cagataagac aataaaag caggctgccg chr19:1269245-1269325 55 1.45e-05 GGCGGAAGCG TATATAAG GCCGGGCTCG chr6:27775820-27775900 44 1.45e-05 TATTGGTCTA AATAAAAA TAAAACGTAA chr5:71404820-71404900 68 1.45e-05 CCCCCTCCCC AATAAAAG ACGAA chr4:31998905-31998985 67 1.45e-05 cagataagag aataaaag caggct chr12:92028603-92028683 70 1.45e-05 cagataacag aataaaag cag chr11:64937635-64937715 40 1.45e-05 GCCCTCAGGC TATATAAG CGCACTCGCG chr5:138882739-138882819 59 1.45e-05 caaataaggg aataaaag ctggccacct chr2:30454349-30454429 20 1.90e-05 CCCCCGCCCC TATAAATA CGGCTTCCCG chr19:3479527-3479607 52 3.82e-05 AGGAGGGGCT TATAAAGA AGGAGGAGCT chr6:64282310-64282390 45 3.82e-05 TCGCGCCGGC TATAAAGG GGAGGGCTTG chr6:30843317-30843397 57 4.00e-05 caagctggac tataaatt cggctcatct chr1:8086384-8086464 9 5.07e-05 gccgccTC TATATATA GCATAGGCCG chr14:90863291-90863371 50 5.07e-05 CGGCGCACCA TATATATA TCGCGGGGCG chr12:120972098-12097217 29 5.07e-05 CCCTCTCCAC TATATATA CAGTCCATCC chr2:73298792-73298872 72 5.07e-05 CTCCGGCCCT TTTAAAAT G chr19:8226149-8226229 16 5.97e-05 tggggcagct tttataag catagggtaa chr8:145682449-145682529 9 5.97e-05 GGGATGAC ATTAAAAG AGGTATTGAC chr17:68125036-68125116 6 5.97e-05 agggg tttataaa gtctcctgta chr1:71513469-71513549 52 5.97e-05 CCGAGTCCCC TTTATAAG GCCGAGGGGG chr1:32801859-32801939 36 6.44e-05 GGGCCGGACA TTTAAATG CGCGCCCAAT chr1:118148596-118148676 45 7.16e-05 GGTCCCGCCG TATAAGAA CGGAGGGGGC chr19:3670319-3670399 43 7.16e-05 ccgctgtcct tataagag aagccgctca chr16:89989684-89989764 36 7.16e-05 GGGCCGCGGC TATAAGAG CGCGCGGCCG chr13:21714580-21714660 71 7.61e-05 CCTGGCCGAC TATAAAGT GT chr17:42264245-42264325 6 1.14e-04 TTTTA TTTAAAGA ATACCTTTTA chr6:26124251-26124331 31 1.50e-04 GCAAATGAGG TATGAAAG TACAGCTTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATAAAAR MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:70048825-70048905 4.3e-06 29_[+2]_43 chr3:49449580-49449660 4.3e-06 33_[+2]_39 chr1:236451604-236451684 5.9e-06 37_[+2]_35 chr2:181556644-181556724 1.4e-05 62_[+2]_10 chr4:6675098-6675178 1.4e-05 46_[+2]_26 chr19:1269245-1269325 1.4e-05 54_[+2]_18 chr6:27775820-27775900 1.4e-05 43_[+2]_29 chr5:71404820-71404900 1.4e-05 67_[+2]_5 chr4:31998905-31998985 1.4e-05 66_[+2]_6 chr12:92028603-92028683 1.4e-05 69_[+2]_3 chr11:64937635-64937715 1.4e-05 39_[+2]_33 chr5:138882739-138882819 1.4e-05 58_[+2]_14 chr2:30454349-30454429 1.9e-05 19_[+2]_53 chr19:3479527-3479607 3.8e-05 51_[+2]_21 chr6:64282310-64282390 3.8e-05 44_[+2]_28 chr6:30843317-30843397 4e-05 56_[+2]_16 chr1:8086384-8086464 5.1e-05 8_[+2]_64 chr14:90863291-90863371 5.1e-05 49_[+2]_23 chr12:120972098-12097217 5.1e-05 28_[+2]_44 chr2:73298792-73298872 5.1e-05 71_[+2]_1 chr19:8226149-8226229 6e-05 15_[+2]_57 chr8:145682449-145682529 6e-05 8_[+2]_64 chr17:68125036-68125116 6e-05 5_[+2]_67 chr1:71513469-71513549 6e-05 51_[+2]_21 chr1:32801859-32801939 6.4e-05 35_[+2]_37 chr1:118148596-118148676 7.2e-05 44_[+2]_28 chr19:3670319-3670399 7.2e-05 42_[+2]_30 chr16:89989684-89989764 7.2e-05 35_[+2]_37 chr13:21714580-21714660 7.6e-05 70_[+2]_2 chr17:42264245-42264325 0.00011 5_[+2]_67 chr6:26124251-26124331 0.00015 30_[+2]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATAAAAR MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATAAAAR width=8 seqs=31 chr3:70048825-70048905 ( 30) TATAAAAA 1 chr3:49449580-49449660 ( 34) TATAAAAG 1 chr1:236451604-236451684 ( 38) TATAAAAT 1 chr2:181556644-181556724 ( 63) AATAAAAG 1 chr4:6675098-6675178 ( 47) AATAAAAG 1 chr19:1269245-1269325 ( 55) TATATAAG 1 chr6:27775820-27775900 ( 44) AATAAAAA 1 chr5:71404820-71404900 ( 68) AATAAAAG 1 chr4:31998905-31998985 ( 67) AATAAAAG 1 chr12:92028603-92028683 ( 70) AATAAAAG 1 chr11:64937635-64937715 ( 40) TATATAAG 1 chr5:138882739-138882819 ( 59) AATAAAAG 1 chr2:30454349-30454429 ( 20) TATAAATA 1 chr19:3479527-3479607 ( 52) TATAAAGA 1 chr6:64282310-64282390 ( 45) TATAAAGG 1 chr6:30843317-30843397 ( 57) TATAAATT 1 chr1:8086384-8086464 ( 9) TATATATA 1 chr14:90863291-90863371 ( 50) TATATATA 1 chr12:120972098-12097217 ( 29) TATATATA 1 chr2:73298792-73298872 ( 72) TTTAAAAT 1 chr19:8226149-8226229 ( 16) TTTATAAG 1 chr8:145682449-145682529 ( 9) ATTAAAAG 1 chr17:68125036-68125116 ( 6) TTTATAAA 1 chr1:71513469-71513549 ( 52) TTTATAAG 1 chr1:32801859-32801939 ( 36) TTTAAATG 1 chr1:118148596-118148676 ( 45) TATAAGAA 1 chr19:3670319-3670399 ( 43) TATAAGAG 1 chr16:89989684-89989764 ( 36) TATAAGAG 1 chr13:21714580-21714660 ( 71) TATAAAGT 1 chr17:42264245-42264325 ( 6) TTTAAAGA 1 chr6:26124251-26124331 ( 31) TATGAAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATAAAAR MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.4993 E= 1.8e-008 47 -1160 -1160 192 206 -1160 -1160 21 -1160 -1160 -1160 235 238 -1160 -327 -1160 200 -1160 -1160 40 228 -1160 -169 -1160 186 -1160 -127 -2 79 -1160 81 -60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATAAAAR MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 31 E= 1.8e-008 0.258065 0.000000 0.000000 0.741935 0.774194 0.000000 0.000000 0.225806 0.000000 0.000000 0.000000 1.000000 0.967742 0.000000 0.032258 0.000000 0.741935 0.000000 0.000000 0.258065 0.903226 0.000000 0.096774 0.000000 0.677419 0.000000 0.129032 0.193548 0.322581 0.000000 0.548387 0.129032 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATAAAAR MEME-2 regular expression -------------------------------------------------------------------------------- [TA][AT]TA[AT]AA[GA] -------------------------------------------------------------------------------- Time 8.68 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGATTGG MEME-3 width = 8 sites = 21 llr = 199 E-value = 9.4e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGATTGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :1:a:::: pos.-specific C 9:1:1::: probability G ::9:::9a matrix T :9::9a1: bits 2.4 * 2.2 * * 1.9 * *** 1.7 * *** * Relative 1.5 * *** * Entropy 1.2 ******** (13.7 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTGATTGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGATTGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:8226149-8226229 45 1.30e-05 gaggcgtgtt ctgattgg atcttgcact chr22:21011312-21011392 8 1.30e-05 gcctact ctgattgg actttattgt chr8:112052655-112052735 58 1.30e-05 tgatagggcg ctgattgg tgtgtttaca chr2:108363426-108363506 66 1.30e-05 tgacagggcg ctgattgg tgcgttt chr4:142253801-142253881 66 1.30e-05 tgacagggcg ctgattgg tgcgttt chr6:30783322-30783402 41 1.30e-05 ccacatcctg ctgattgg tagagccgag chr17:21515899-21515979 73 1.30e-05 caggcttact ctgattgg chr19:1269245-1269325 11 1.30e-05 GGCGCGCCCT CTGATTGG CCCAGGATGT chr8:22927837-22927917 64 1.30e-05 ccacaccctg ctgattgg tagagcgga chr2:131966830-131966910 58 1.30e-05 actgcatgtt ctgattgg atgagaaaaa chr4:79550573-79550653 39 2.12e-05 gaggcagtgt ctgatttg catagggccc chr19:50979524-50979604 57 2.12e-05 GAGCGGGCTC CTGATTTG TGATGACGTC chr1:100828554-100828634 46 4.63e-05 atagggcccg cagattgg ttcaaccagg chr10:126107510-12610759 49 4.63e-05 ACCCTCGCCG CTCATTGG CTGGGGCGGA chr6:26158146-26158226 33 4.63e-05 TCTGGGCTTT CTCATTGG GTACAAGTAA chr22:48027340-48027420 62 4.63e-05 ccggcttcca cagattgg acgaggccca chr6:26923988-26924068 32 5.42e-05 ccacatcctg atgattgg tccatttcat chr1:149858303-149858383 64 6.26e-05 GACTCTTGAC TTGATTGG CCGGTTCTG chr15:89010906-89010986 21 8.29e-05 CAGACGGAAA CTGACTGG GGTCAATTCA chr6:26033836-26033916 41 8.29e-05 AGTATTTATA CTGACTGG AGGTAGGCTG chr12:120972098-12097217 62 9.66e-05 CTTTGAGATG CTGTTTGG CGACTCGTCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGATTGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:8226149-8226229 1.3e-05 44_[+3]_28 chr22:21011312-21011392 1.3e-05 7_[+3]_65 chr8:112052655-112052735 1.3e-05 57_[+3]_15 chr2:108363426-108363506 1.3e-05 65_[+3]_7 chr4:142253801-142253881 1.3e-05 65_[+3]_7 chr6:30783322-30783402 1.3e-05 40_[+3]_32 chr17:21515899-21515979 1.3e-05 72_[+3] chr19:1269245-1269325 1.3e-05 10_[+3]_62 chr8:22927837-22927917 1.3e-05 63_[+3]_9 chr2:131966830-131966910 1.3e-05 57_[+3]_15 chr4:79550573-79550653 2.1e-05 38_[+3]_34 chr19:50979524-50979604 2.1e-05 56_[+3]_16 chr1:100828554-100828634 4.6e-05 45_[+3]_27 chr10:126107510-12610759 4.6e-05 48_[+3]_24 chr6:26158146-26158226 4.6e-05 32_[+3]_40 chr22:48027340-48027420 4.6e-05 61_[+3]_11 chr6:26923988-26924068 5.4e-05 31_[+3]_41 chr1:149858303-149858383 6.3e-05 63_[+3]_9 chr15:89010906-89010986 8.3e-05 20_[+3]_52 chr6:26033836-26033916 8.3e-05 40_[+3]_32 chr12:120972098-12097217 9.7e-05 61_[+3]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGATTGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGATTGG width=8 seqs=21 chr19:8226149-8226229 ( 45) CTGATTGG 1 chr22:21011312-21011392 ( 8) CTGATTGG 1 chr8:112052655-112052735 ( 58) CTGATTGG 1 chr2:108363426-108363506 ( 66) CTGATTGG 1 chr4:142253801-142253881 ( 66) CTGATTGG 1 chr6:30783322-30783402 ( 41) CTGATTGG 1 chr17:21515899-21515979 ( 73) CTGATTGG 1 chr19:1269245-1269325 ( 11) CTGATTGG 1 chr8:22927837-22927917 ( 64) CTGATTGG 1 chr2:131966830-131966910 ( 58) CTGATTGG 1 chr4:79550573-79550653 ( 39) CTGATTTG 1 chr19:50979524-50979604 ( 57) CTGATTTG 1 chr1:100828554-100828634 ( 46) CAGATTGG 1 chr10:126107510-12610759 ( 49) CTCATTGG 1 chr6:26158146-26158226 ( 33) CTCATTGG 1 chr22:48027340-48027420 ( 62) CAGATTGG 1 chr6:26923988-26924068 ( 32) ATGATTGG 1 chr1:149858303-149858383 ( 64) TTGATTGG 1 chr15:89010906-89010986 ( 21) CTGACTGG 1 chr6:26033836-26033916 ( 41) CTGACTGG 1 chr12:120972098-12097217 ( 62) CTGTTTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGATTGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0668 E= 9.4e-004 -196 156 -1104 -204 -97 -1104 -1104 221 -1104 -168 153 -1104 236 -1104 -1104 -204 -1104 -168 -1104 221 -1104 -1104 -1104 235 -1104 -1104 153 -104 -1104 -1104 168 -1104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGATTGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 9.4e-004 0.047619 0.904762 0.000000 0.047619 0.095238 0.000000 0.000000 0.904762 0.000000 0.095238 0.904762 0.000000 0.952381 0.000000 0.000000 0.047619 0.000000 0.095238 0.000000 0.904762 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.904762 0.095238 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGATTGG MEME-3 regular expression -------------------------------------------------------------------------------- CTGATTGG -------------------------------------------------------------------------------- Time 12.33 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGACAAA MEME-4 width = 8 sites = 23 llr = 205 E-value = 1.1e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGACAAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 13273aaa pos.-specific C :::37::: probability G 978::::: matrix T :::::::: bits 2.4 ** 2.2 *** 1.9 *** 1.7 *** Relative 1.5 *** Entropy 1.2 * ** *** (12.9 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGACAAA consensus A CA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGACAAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:116643659-11664373 57 1.11e-05 GTCGGCGCTG GGGACAAA ATGCCTCAAC chr5:176944045-176944125 24 1.11e-05 ATCGCGCAGA GGGACAAA TTTGTTCCGG chr17:28619003-28619083 31 1.11e-05 GGTCCGCGGA GGGACAAA ACTCCCCCCT chr17:2615115-2615195 33 1.11e-05 CGGCCCGCGA GGGACAAA ACGCGCCGCG chr11:111742226-11174230 68 1.11e-05 TGTCCGCCGA GGGACAAA AGACC chr12:124068901-12406898 15 1.79e-05 GAAAGGACTA GGGAAAAA TTTTTGGTCC chr2:110970108-110970188 72 2.45e-05 GGTGGGGCGT GAGACAAA A chr17:21515899-21515979 49 2.85e-05 ttgattggat gagaaaaa agcctccagg chr12:110906116-11090619 67 2.85e-05 AACGCGTCCT GAGAAAAA AGGGGA chr12:110338023-11033810 1 2.85e-05 . GAGAAAAA CACAGGCTCC chr2:131966830-131966910 68 2.85e-05 ctgattggat gagaaaaa ccctc chr9:125590975-125591055 15 3.52e-05 GTCCTACCTT GGAACAAA ACACCTCGAC chr2:200324385-200324465 63 5.35e-05 CGGCGCCAGA GGGCCAAA CTAAGTTCGG chr10:45474269-45474349 51 5.35e-05 ACTGTCACGA GGGCCAAA AATAGCCTGC chr5:138882739-138882819 45 5.35e-05 gatgtgggcg gggccaaa taagggaata chr17:79093593-79093673 6 5.35e-05 GACAC GGGCCAAA GCCCGCCTCC chr5:54603665-54603745 20 5.75e-05 aagaaaagca ggaaaaaa aaaaaaagTC chr15:75230505-75230585 42 9.25e-05 CGGCGCGCTG AGGACAAA CTGTTAGCCT chr18:43547309-43547389 50 9.25e-05 GCCGCAACGT AGGACAAA CCACTCCAGG chr17:6544159-6544239 64 9.92e-05 TGAGGAACTA GAGCAAAA AGCCATGCG chr11:18610229-18610309 55 1.18e-04 AAGCCGCTGA GGACCAAA CTTCCCGGCG chr8:133687843-133687923 35 1.18e-04 CGGCCGCGCG GGACCAAA ACAAGCCGCG chr9:124855563-124855643 50 1.49e-04 GGTCCGGGAA GGGACAAT CGCCGGCCGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGACAAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:116643659-11664373 1.1e-05 56_[+4]_16 chr5:176944045-176944125 1.1e-05 23_[+4]_49 chr17:28619003-28619083 1.1e-05 30_[+4]_42 chr17:2615115-2615195 1.1e-05 32_[+4]_40 chr11:111742226-11174230 1.1e-05 67_[+4]_5 chr12:124068901-12406898 1.8e-05 14_[+4]_58 chr2:110970108-110970188 2.5e-05 71_[+4]_1 chr17:21515899-21515979 2.9e-05 48_[+4]_24 chr12:110906116-11090619 2.9e-05 66_[+4]_6 chr12:110338023-11033810 2.9e-05 [+4]_72 chr2:131966830-131966910 2.9e-05 67_[+4]_5 chr9:125590975-125591055 3.5e-05 14_[+4]_58 chr2:200324385-200324465 5.3e-05 62_[+4]_10 chr10:45474269-45474349 5.3e-05 50_[+4]_22 chr5:138882739-138882819 5.3e-05 44_[+4]_28 chr17:79093593-79093673 5.3e-05 5_[+4]_67 chr5:54603665-54603745 5.8e-05 19_[+4]_53 chr15:75230505-75230585 9.3e-05 41_[+4]_31 chr18:43547309-43547389 9.3e-05 49_[+4]_23 chr17:6544159-6544239 9.9e-05 63_[+4]_9 chr11:18610229-18610309 0.00012 54_[+4]_18 chr8:133687843-133687923 0.00012 34_[+4]_38 chr9:124855563-124855643 0.00015 49_[+4]_23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGACAAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGACAAA width=8 seqs=23 chr11:116643659-11664373 ( 57) GGGACAAA 1 chr5:176944045-176944125 ( 24) GGGACAAA 1 chr17:28619003-28619083 ( 31) GGGACAAA 1 chr17:2615115-2615195 ( 33) GGGACAAA 1 chr11:111742226-11174230 ( 68) GGGACAAA 1 chr12:124068901-12406898 ( 15) GGGAAAAA 1 chr2:110970108-110970188 ( 72) GAGACAAA 1 chr17:21515899-21515979 ( 49) GAGAAAAA 1 chr12:110906116-11090619 ( 67) GAGAAAAA 1 chr12:110338023-11033810 ( 1) GAGAAAAA 1 chr2:131966830-131966910 ( 68) GAGAAAAA 1 chr9:125590975-125591055 ( 15) GGAACAAA 1 chr2:200324385-200324465 ( 63) GGGCCAAA 1 chr10:45474269-45474349 ( 51) GGGCCAAA 1 chr5:138882739-138882819 ( 45) GGGCCAAA 1 chr17:79093593-79093673 ( 6) GGGCCAAA 1 chr5:54603665-54603745 ( 20) GGAAAAAA 1 chr15:75230505-75230585 ( 42) AGGACAAA 1 chr18:43547309-43547389 ( 50) AGGACAAA 1 chr17:6544159-6544239 ( 64) GAGCAAAA 1 chr11:18610229-18610309 ( 55) GGACCAAA 1 chr8:133687843-133687923 ( 35) GGACCAAA 1 chr9:124855563-124855643 ( 50) GGGACAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGACAAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.1915 E= 1.1e+001 -110 -1117 155 -1117 49 -1117 124 -1117 -10 -1117 140 -1117 190 -1 -1117 -1117 71 118 -1117 -1117 243 -1117 -1117 -1117 243 -1117 -1117 -1117 236 -1117 -1117 -217 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGACAAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 1.1e+001 0.086957 0.000000 0.913043 0.000000 0.260870 0.000000 0.739130 0.000000 0.173913 0.000000 0.826087 0.000000 0.695652 0.304348 0.000000 0.000000 0.304348 0.695652 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.956522 0.000000 0.000000 0.043478 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGACAAA MEME-4 regular expression -------------------------------------------------------------------------------- G[GA]G[AC][CA]AAA -------------------------------------------------------------------------------- Time 15.99 secs. ******************************************************************************** ******************************************************************************** MOTIF AGGMTGTG MEME-5 width = 8 sites = 20 llr = 183 E-value = 1.1e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGGMTGTG MEME-5 Description -------------------------------------------------------------------------------- Simplified A a::52::: pos.-specific C :::6:::: probability G :aa::a3a matrix T ::::9:7: bits 2.4 * 2.2 * 1.9 * 1.7 *** ** * Relative 1.5 *** ** * Entropy 1.2 *** **** (13.2 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AGGCTGTG consensus A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGMTGTG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:181556644-181556724 37 1.26e-05 acgaatcagc aggatgtg ggtggggcca chr4:6675098-6675178 21 1.26e-05 accaatcagc aggatgtg ggtggggcca chr19:1269245-1269325 22 1.26e-05 TGATTGGCCC AGGATGTG TAGGGGGCGG chr4:31998905-31998985 41 1.26e-05 accaatcagc aggatgtg ggtggggcca chr12:92028603-92028683 44 1.26e-05 accaatcagc aggatgtg ggtggggcca chr5:138882739-138882819 33 1.26e-05 accaatcagc aggatgtg ggcggggcca chr15:89010906-89010986 47 3.33e-05 CAAGTCATGC AGGCTGTG AGAAACGCGG chr7:100797735-100797815 66 3.33e-05 GCAGGATGGT AGGCTGTG CGAAGAG chr1:166136111-166136191 47 3.33e-05 GGGCGCCAGG AGGCTGTG GCCCGGGGTG chr6:26033836-26033916 53 3.33e-05 GACTGGAGGT AGGCTGTG AGGAATTCTC chr1:116961243-116961323 69 3.33e-05 CCTCGGCCTG AGGCTGTG GGAT chr1:24969422-24969502 33 5.34e-05 TACGGGTCGA AGGATGGG TCACGTCACA chr19:8226149-8226229 2 9.83e-05 c aggctggg gcagctttta chr19:52430647-52430727 65 9.83e-05 GCCGGCTTGG AGGCTGGG GGAGGGCC chr17:68125036-68125116 27 9.83e-05 tcctgtaaac aggaagtg tctcagtctg chr17:28619003-28619083 5 9.83e-05 GCTG AGGCTGGG AGAAACGGGG chr9:137000981-137001061 10 9.83e-05 TCAGTTTTT AGGAAGTG CATTAGAAGG chr10:79803455-79803535 67 9.83e-05 CAGTGCAGGG AGGCTGGG TCTTGG chr11:77185393-77185473 27 9.83e-05 GTGACGCCAG AGGCTGGG GAATCACCCG chr4:79550573-79550653 30 1.18e-04 acgcttgagg aggcagtg tctgatttgc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGMTGTG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:181556644-181556724 1.3e-05 36_[+5]_36 chr4:6675098-6675178 1.3e-05 20_[+5]_52 chr19:1269245-1269325 1.3e-05 21_[+5]_51 chr4:31998905-31998985 1.3e-05 40_[+5]_32 chr12:92028603-92028683 1.3e-05 43_[+5]_29 chr5:138882739-138882819 1.3e-05 32_[+5]_40 chr15:89010906-89010986 3.3e-05 46_[+5]_26 chr7:100797735-100797815 3.3e-05 65_[+5]_7 chr1:166136111-166136191 3.3e-05 46_[+5]_26 chr6:26033836-26033916 3.3e-05 52_[+5]_20 chr1:116961243-116961323 3.3e-05 68_[+5]_4 chr1:24969422-24969502 5.3e-05 32_[+5]_40 chr19:8226149-8226229 9.8e-05 1_[+5]_71 chr19:52430647-52430727 9.8e-05 64_[+5]_8 chr17:68125036-68125116 9.8e-05 26_[+5]_46 chr17:28619003-28619083 9.8e-05 4_[+5]_68 chr9:137000981-137001061 9.8e-05 9_[+5]_63 chr10:79803455-79803535 9.8e-05 66_[+5]_6 chr11:77185393-77185473 9.8e-05 26_[+5]_46 chr4:79550573-79550653 0.00012 29_[+5]_43 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGMTGTG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGGMTGTG width=8 seqs=20 chr2:181556644-181556724 ( 37) AGGATGTG 1 chr4:6675098-6675178 ( 21) AGGATGTG 1 chr19:1269245-1269325 ( 22) AGGATGTG 1 chr4:31998905-31998985 ( 41) AGGATGTG 1 chr12:92028603-92028683 ( 44) AGGATGTG 1 chr5:138882739-138882819 ( 33) AGGATGTG 1 chr15:89010906-89010986 ( 47) AGGCTGTG 1 chr7:100797735-100797815 ( 66) AGGCTGTG 1 chr1:166136111-166136191 ( 47) AGGCTGTG 1 chr6:26033836-26033916 ( 53) AGGCTGTG 1 chr1:116961243-116961323 ( 69) AGGCTGTG 1 chr1:24969422-24969502 ( 33) AGGATGGG 1 chr19:8226149-8226229 ( 2) AGGCTGGG 1 chr19:52430647-52430727 ( 65) AGGCTGGG 1 chr17:68125036-68125116 ( 27) AGGAAGTG 1 chr17:28619003-28619083 ( 5) AGGCTGGG 1 chr9:137000981-137001061 ( 10) AGGAAGTG 1 chr10:79803455-79803535 ( 67) AGGCTGGG 1 chr11:77185393-77185473 ( 27) AGGCTGGG 1 chr4:79550573-79550653 ( 30) AGGCAGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGMTGTG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0839 E= 1.1e+002 243 -1097 -1097 -1097 -1097 -1097 168 -1097 -1097 -1097 168 -1097 127 85 -1097 -1097 -31 -1097 -1097 212 -1097 -1097 168 -1097 -1097 -1097 -6 184 -1097 -1097 168 -1097 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGMTGTG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 1.1e+002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.450000 0.550000 0.000000 0.000000 0.150000 0.000000 0.000000 0.850000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.300000 0.700000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGMTGTG MEME-5 regular expression -------------------------------------------------------------------------------- AGG[CA]TG[TG]G -------------------------------------------------------------------------------- Time 19.61 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:14225026-14225106 5.16e-01 80 chr1:180123667-180123747 1.00e+00 80 chr19:17462795-17462875 4.85e-02 13_[+1(1.21e-05)]_59 chr16:85598206-85598286 6.20e-01 80 chr17:79093593-79093673 7.38e-04 5_[+4(5.35e-05)]_39_[+1(1.99e-05)]_\ 20 chr8:133687843-133687923 3.27e-01 80 chr6:139456075-139456155 1.41e-01 1_[+1(1.21e-05)]_29_[+1(1.21e-05)]_\ 34 chr17:78965593-78965673 1.00e+00 80 chr6:26923988-26924068 2.21e-02 31_[+3(5.42e-05)]_41 chr11:111742226-11174230 2.36e-03 67_[+4(1.11e-05)]_5 chr1:116961243-116961323 1.80e-01 68_[+5(3.33e-05)]_4 chr14:102785971-10278605 8.10e-01 80 chr7:89874385-89874465 4.28e-01 80 chr5:138882739-138882819 1.61e-05 32_[+5(1.26e-05)]_4_[+4(5.35e-05)]_\ 6_[+2(1.45e-05)]_14 chr5:154317807-154317887 8.34e-01 80 chr1:149783905-149783985 3.12e-01 80 chr2:131966830-131966910 2.37e-04 57_[+3(1.30e-05)]_2_[+4(2.85e-05)]_\ 5 chr8:100905952-100906032 5.78e-01 80 chr19:7985159-7985239 7.74e-01 80 chr6:150067727-150067807 3.22e-01 80 chr2:19548155-19548235 5.89e-02 53_[+1(1.21e-05)]_19 chr19:50979524-50979604 1.31e-04 6_[+1(1.21e-05)]_19_[+1(1.21e-05)]_\ 15_[+3(2.12e-05)]_16 chr12:110338023-11033810 4.18e-02 [+4(2.85e-05)]_72 chr18:10525926-10526006 9.98e-01 80 chr9:69065398-69065478 7.20e-01 80 chr6:64282310-64282390 1.50e-02 44_[+2(3.82e-05)]_28 chr14:54976526-54976606 6.20e-01 80 chr3:141594901-141594981 9.98e-01 80 chr17:80325981-80326061 1.71e-01 80 chr1:145516238-145516318 3.39e-01 80 chr17:80709817-80709897 8.64e-01 80 chr2:74781524-74781604 2.20e-02 15_[+1(1.99e-05)]_12_[+1(1.21e-05)]_\ 11_[+1(1.21e-05)]_18 chr9:68726365-68726445 9.40e-01 80 chr10:104192456-10419253 4.56e-01 80 chr17:76554566-76554646 2.22e-02 7_[+1(2.71e-05)]_14_[+1(2.71e-05)]_\ 14_[+1(2.71e-05)]_21 chr14:50319605-50319685 1.85e-01 80 chr1:4052279-4052359 4.54e-02 9_[+1(1.99e-05)]_9_[+1(1.99e-05)]_9_\ [+1(1.99e-05)]_8_[+1(1.99e-05)]_13 chr19:17622838-17622918 3.98e-01 80 chr2:75873790-75873870 4.37e-01 80 chr11:77185393-77185473 4.12e-03 1_[+1(7.89e-05)]_17_[+5(9.83e-05)]_\ 19_[+1(1.21e-05)]_19 chr12:110906116-11090619 7.64e-02 38_[+4(5.35e-05)]_20_[+4(2.85e-05)]_\ 6 chr11:64937635-64937715 8.19e-03 39_[+2(1.45e-05)]_33 chr21:43430348-43430428 8.83e-01 80 chr8:22927837-22927917 2.77e-02 63_[+3(1.30e-05)]_9 chr13:41635555-41635635 4.07e-01 80 chr17:20771728-20771808 6.21e-01 80 chr11:9025537-9025617 7.92e-02 80 chr4:147096761-147096841 6.62e-01 80 chr17:30469336-30469416 3.39e-01 80 chr20:43160410-43160490 7.54e-01 80 chr22:48027340-48027420 2.53e-02 61_[+3(4.63e-05)]_11 chr6:150255537-150255617 6.15e-03 5_[+1(2.71e-05)]_18_[+1(2.71e-05)]_\ 18_[+1(2.71e-05)]_15 chr6:26322377-26322457 4.87e-01 80 chrX:153607681-153607761 1.86e-01 80 chr9:125590975-125591055 2.69e-02 14_[+4(3.52e-05)]_58 chr2:15701452-15701532 1.38e-01 80 chr1:27286906-27286986 6.80e-01 80 chr19:50862202-50862282 7.03e-02 29_[+1(1.21e-05)]_3_[+1(7.13e-05)]_\ 22_[+1(3.45e-05)]_2 chr12:92028603-92028683 4.46e-05 43_[+5(1.26e-05)]_18_[+2(1.45e-05)]_\ 3 chr12:58138360-58138440 2.04e-03 38_[+1(7.13e-05)]_34 chr17:9479167-9479247 9.29e-01 80 chr17:29158878-29158958 9.15e-01 80 chr20:34203689-34203769 1.09e-01 62_[+1(1.21e-05)]_10 chr2:2577843-2577923 2.19e-02 54_[+1(1.99e-05)]_18 chr1:32573586-32573666 4.63e-01 80 chr4:31998905-31998985 3.76e-05 40_[+5(1.26e-05)]_18_[+2(1.45e-05)]_\ 6 chr3:49726938-49727018 1.90e-01 80 chr5:71404820-71404900 8.81e-03 67_[+2(1.45e-05)]_5 chr15:101142306-10114238 5.35e-02 80 chr10:79803455-79803535 6.02e-04 66_[+5(9.83e-05)]_6 chr20:42939757-42939837 9.89e-01 80 chr6:27775820-27775900 4.28e-03 43_[+2(1.45e-05)]_29 chr14:102176617-10217669 3.96e-01 80 chr15:30917902-30917982 6.25e-01 80 chr8:101734327-101734407 3.93e-01 80 chr2:28114123-28114203 2.07e-02 47_[+1(1.21e-05)]_25 chr6:26033836-26033916 2.74e-03 40_[+3(8.29e-05)]_4_[+5(3.33e-05)]_\ 20 chr4:119512854-119512934 1.06e-01 10_[+1(1.21e-05)]_62 chr19:1269245-1269325 5.84e-06 10_[+3(1.30e-05)]_3_[+5(1.26e-05)]_\ 25_[+2(1.45e-05)]_18 chr20:25388238-25388318 8.31e-01 80 chr14:36278534-36278614 5.01e-02 30_[+1(1.21e-05)]_8_[+1(1.21e-05)]_\ 26 chr11:47198643-47198723 7.33e-01 80 chr2:30454349-30454429 3.92e-02 19_[+2(1.90e-05)]_53 chr1:236451604-236451684 6.59e-03 37_[+2(5.94e-06)]_35 chr17:21515899-21515979 8.17e-04 38_[+3(6.26e-05)]_2_[+4(2.85e-05)]_\ 16_[+3(1.30e-05)] chr6:26158146-26158226 3.12e-03 32_[+3(4.63e-05)]_40 chr1:95538480-95538560 9.32e-01 80 chr10:127585003-12758508 9.70e-01 80 chr19:6361576-6361656 1.20e-02 43_[+1(7.13e-05)]_29 chr6:143381664-143381744 9.96e-01 80 chr15:31284106-31284186 1.00e+00 80 chr2:62132693-62132773 4.65e-01 80 chr17:6544159-6544239 5.35e-02 63_[+4(9.92e-05)]_9 chr9:137000981-137001061 5.82e-02 9_[+5(9.83e-05)]_63 chr11:18610229-18610309 1.90e-01 80 chr8:144512931-144513011 4.85e-01 80 chr15:101792133-10179221 1.23e-02 21_[+1(5.10e-05)]_51 chr11:74303527-74303607 7.60e-01 80 chr10:126107510-12610759 2.25e-02 48_[+3(4.63e-05)]_24 chr16:53468314-53468394 9.85e-01 80 chr22:39097054-39097134 9.07e-02 7_[+1(3.45e-05)]_3_[+1(1.21e-05)]_\ 54 chr16:48278127-48278207 9.90e-01 80 chr2:85843138-85843218 2.61e-01 80 chr2:207630229-207630309 3.78e-01 80 chr19:33572015-33572095 4.54e-01 80 chr6:34664733-34664813 3.30e-02 80 chr12:132434414-13243449 1.00e+00 80 chr17:42785957-42786037 5.36e-01 80 chr1:110198708-110198788 9.79e-01 80 chr8:143484679-143484759 3.13e-01 80 chr14:55738788-55738868 6.81e-03 60_[+1(1.21e-05)]_12 chr4:187125480-187125560 3.16e-01 80 chr17:2615115-2615195 9.02e-02 32_[+4(1.11e-05)]_40 chr11:14521448-14521528 8.26e-01 80 chr14:23388116-23388196 3.67e-02 11_[+1(1.21e-05)]_61 chr5:33440764-33440844 1.74e-01 80 chr7:75795866-75795946 4.36e-02 70_[+1(1.21e-05)]_2 chr1:224180315-224180395 3.69e-02 30_[+1(1.21e-05)]_42 chr22:32808250-32808330 3.08e-01 80 chr19:4969015-4969095 8.80e-01 80 chr17:28619003-28619083 6.08e-03 4_[+5(9.83e-05)]_18_[+4(1.11e-05)]_\ 42 chr20:3140559-3140639 7.23e-01 80 chr9:27573808-27573888 1.62e-01 80 chr19:1940700-1940780 1.22e-01 72_[+1(1.21e-05)] chr5:95297765-95297845 8.45e-03 18_[+1(1.21e-05)]_54 chr1:166136111-166136191 1.81e-01 46_[+5(3.33e-05)]_26 chr12:124068901-12406898 1.68e-02 14_[+4(1.79e-05)]_58 chr1:149858303-149858383 1.18e-01 63_[+3(6.26e-05)]_9 chr9:139010516-139010596 8.43e-01 80 chr8:27695363-27695443 9.88e-01 80 chrX:119737692-119737772 2.55e-02 80 chr16:23464435-23464515 5.63e-01 80 chr1:71513469-71513549 2.51e-02 51_[+2(5.97e-05)]_21 chr18:43547309-43547389 2.46e-02 49_[+4(9.25e-05)]_23 chr12:64616287-64616367 3.89e-01 80 chr11:842751-842831 9.41e-01 80 chr1:75198797-75198877 1.02e-02 80 chr16:66968373-66968453 8.46e-01 80 chr6:52529155-52529235 2.03e-01 80 chr3:49449580-49449660 1.61e-02 33_[+2(4.26e-06)]_39 chr19:36605805-36605885 9.46e-01 80 chr1:236687211-236687291 6.59e-01 80 chr14:65453538-65453618 4.88e-01 80 chr7:100034319-100034399 6.45e-01 80 chr3:195414158-195414238 9.96e-01 80 chr7:100797735-100797815 5.98e-02 65_[+5(3.33e-05)]_7 chr2:110970108-110970188 2.36e-02 71_[+4(2.45e-05)]_1 chr15:75230505-75230585 1.98e-01 41_[+4(9.25e-05)]_31 chr6:30783322-30783402 4.31e-02 40_[+3(1.30e-05)]_32 chr2:232826326-232826406 9.96e-01 80 chr20:50827056-50827136 6.94e-03 22_[+1(3.45e-05)]_50 chr4:6675098-6675178 5.63e-05 20_[+5(1.26e-05)]_18_[+2(1.45e-05)]_\ 26 chr16:89989684-89989764 6.63e-03 1_[+1(2.71e-05)]_26_[+2(7.16e-05)]_\ 37 chr19:44037272-44037352 9.20e-01 80 chr4:1714071-1714151 9.62e-01 80 chr12:127544995-12754507 4.09e-01 80 chrX:23925898-23925978 5.15e-01 80 chr13:28024641-28024721 7.11e-01 80 chr15:42066644-42066724 5.84e-01 80 chr2:73298792-73298872 8.28e-02 71_[+2(5.07e-05)]_1 chr20:3451583-3451663 8.14e-01 80 chr1:3817773-3817853 8.36e-01 80 chr1:192778082-192778162 4.01e-01 80 chr17:68125036-68125116 5.36e-04 5_[+2(5.97e-05)]_13_[+5(9.83e-05)]_\ 46 chr6:26124251-26124331 3.37e-02 80 chr19:15530041-15530121 3.40e-01 80 chr19:3479527-3479607 2.16e-02 18_[+2(3.82e-05)]_25_[+2(3.82e-05)]_\ 21 chr6:30843317-30843397 5.04e-03 56_[+2(4.00e-05)]_16 chr10:102027442-10202752 3.45e-01 80 chr8:21967177-21967257 7.39e-02 32_[+1(1.21e-05)]_40 chr3:70048825-70048905 7.66e-03 29_[+2(4.26e-06)]_43 chr4:79550573-79550653 2.29e-04 38_[+3(2.12e-05)]_11_[+3(4.63e-05)]_\ 15 chr19:52430647-52430727 3.58e-01 64_[+5(9.83e-05)]_8 chr2:68384646-68384726 3.11e-01 80 chr15:49338690-49338770 4.43e-01 80 chr12:27396983-27397063 8.05e-03 65_[+1(1.21e-05)]_7 chr17:1196891-1196971 6.74e-03 47_[+1(1.99e-05)]_14_[+1(1.99e-05)]_\ 3 chr1:32801859-32801939 1.03e-01 35_[+2(6.44e-05)]_37 chr11:329574-329654 4.55e-02 80 chr1:156698629-156698709 2.26e-01 80 chr7:98476464-98476544 9.99e-01 80 chr10:45474269-45474349 9.93e-02 50_[+4(5.35e-05)]_22 chr16:56574241-56574321 3.69e-03 41_[+1(1.21e-05)]_20_[+1(2.71e-05)]_\ 3 chr10:104613995-10461407 8.41e-01 80 chr15:91565846-91565926 1.32e-02 80 chr17:27071464-27071544 5.59e-01 80 chr19:17728225-17728305 1.21e-02 5_[+1(1.99e-05)]_67 chr3:182817265-182817345 8.66e-01 80 chr13:45694521-45694601 6.73e-02 80 chr13:108870619-10887069 8.87e-01 80 chr2:181556644-181556724 1.84e-04 36_[+5(1.26e-05)]_18_[+2(1.45e-05)]_\ 10 chr11:32456159-32456239 5.02e-01 80 chr4:142253801-142253881 5.35e-02 27_[+3(1.30e-05)]_30_[+3(1.30e-05)]_\ 7 chr16:3550900-3550980 9.16e-01 80 chr12:120933762-12093384 1.29e-01 80 chr5:137805250-137805330 5.25e-02 80 chr1:100828554-100828634 7.74e-03 45_[+3(4.63e-05)]_27 chr1:24969422-24969502 1.33e-03 32_[+5(5.34e-05)]_[+1(5.10e-05)]_32 chr19:50837490-50837570 1.52e-01 48_[+1(7.13e-05)]_24 chr12:1100035-1100115 9.75e-01 80 chr5:176944045-176944125 8.79e-03 23_[+4(1.11e-05)]_49 chr12:120972098-12097217 6.91e-03 28_[+2(5.07e-05)]_25_[+3(9.66e-05)]_\ 11 chr12:12764730-12764810 9.34e-01 80 chr2:3381546-3381626 8.12e-01 80 chr2:108363426-108363506 5.35e-02 27_[+3(1.30e-05)]_30_[+3(1.30e-05)]_\ 7 chr10:135122446-13512252 9.94e-01 80 chr20:354209-354289 1.37e-03 17_[+1(1.99e-05)]_55 chr15:89010906-89010986 8.25e-04 20_[+3(8.29e-05)]_18_[+5(3.33e-05)]_\ 26 chr5:54603665-54603745 9.48e-03 19_[+4(5.75e-05)]_53 chr8:112052655-112052735 1.83e-02 19_[+3(1.30e-05)]_30_[+3(1.30e-05)]_\ 15 chr6:32097867-32097947 3.16e-01 80 chr12:4714019-4714099 7.02e-01 80 chr14:90863291-90863371 1.30e-01 49_[+2(5.07e-05)]_23 chr2:85581759-85581839 2.92e-01 80 chr5:52856402-52856482 2.22e-01 80 chr10:35379585-35379665 2.38e-01 80 chr19:3670319-3670399 3.35e-02 42_[+2(7.16e-05)]_30 chr19:45971090-45971170 5.69e-01 80 chr13:26760690-26760770 8.13e-01 80 chr16:80574736-80574816 9.71e-01 80 chr20:33543419-33543499 3.68e-01 80 chr6:30640793-30640873 8.04e-01 80 chr19:5791233-5791313 1.58e-01 80 chr20:29611656-29611736 1.00e+00 80 chr13:21714580-21714660 1.54e-01 70_[+2(7.61e-05)]_2 chr9:124855563-124855643 1.27e-01 80 chr16:50058960-50059040 8.42e-01 80 chr19:17623046-17623126 9.86e-01 80 chr11:61735103-61735183 8.02e-01 80 chr10:74451838-74451918 8.45e-01 80 chr8:145682449-145682529 1.58e-03 8_[+2(5.97e-05)]_6_[+1(2.71e-05)]_\ 21_[+1(2.71e-05)]_21 chr1:165600158-165600238 8.64e-02 80 chr19:39971334-39971414 5.26e-01 80 chr17:42264245-42264325 1.68e-02 20_[+1(7.89e-05)]_52 chr18:55297441-55297521 5.19e-01 80 chr8:68256189-68256269 9.08e-01 80 chr1:8086384-8086464 5.99e-02 8_[+2(5.07e-05)]_64 chr13:103498182-10349826 5.14e-01 80 chr22:21011312-21011392 3.16e-02 7_[+3(1.30e-05)]_16_[+3(1.30e-05)]_\ 41 chr20:39657354-39657434 2.35e-01 80 chr16:30064322-30064402 8.33e-01 80 chr2:46656288-46656368 4.99e-01 80 chr1:118148596-118148676 2.10e-01 44_[+2(7.16e-05)]_28 chr11:116643659-11664373 5.95e-02 56_[+4(1.11e-05)]_16 chr11:62446600-62446680 7.02e-01 80 chr2:200324385-200324465 5.04e-02 62_[+4(5.35e-05)]_10 chr19:8226149-8226229 1.78e-05 1_[+5(9.83e-05)]_6_[+2(5.97e-05)]_\ 21_[+3(1.30e-05)]_28 chr16:19079270-19079350 6.50e-02 46_[+1(1.99e-05)]_26 chr17:79650776-79650856 1.00e+00 80 chr19:2051263-2051343 2.03e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n07.farnam.hpc.yale.internal ********************************************************************************