******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/MTA2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr19:2494623-2494703 1.0000 80 chr11:1439654-1439734 1.0000 80 chr12:132111987-13211206 1.0000 80 chr2:71681047-71681127 1.0000 80 chr12:54764020-54764100 1.0000 80 chr4:1408949-1409029 1.0000 80 chr12:49582518-49582598 1.0000 80 chr16:84964221-84964301 1.0000 80 chr7:123174933-123175013 1.0000 80 chr19:3477694-3477774 1.0000 80 chr21:38446107-38446187 1.0000 80 chr19:8428464-8428544 1.0000 80 chr14:73714269-73714349 1.0000 80 chr17:19091383-19091463 1.0000 80 chrX:2438279-2438359 1.0000 80 chr1:54841508-54841588 1.0000 80 chr22:48047498-48047578 1.0000 80 chr14:75953088-75953168 1.0000 80 chr7:73831955-73832035 1.0000 80 chr1:148556020-148556100 1.0000 80 chr7:128417948-128418028 1.0000 80 chr16:90098608-90098688 1.0000 80 chr3:5021297-5021377 1.0000 80 chr15:63804517-63804597 1.0000 80 chr17:6918125-6918205 1.0000 80 chrX:1572483-1572563 1.0000 80 chr6:150630110-150630190 1.0000 80 chr1:54411240-54411320 1.0000 80 chr6:3229198-3229278 1.0000 80 chr3:138476419-138476499 1.0000 80 chr1:228674433-228674513 1.0000 80 chr6:27468014-27468094 1.0000 80 chr7:44587138-44587218 1.0000 80 chr19:56159814-56159894 1.0000 80 chr19:18529656-18529736 1.0000 80 chr17:80826857-80826937 1.0000 80 chr7:75496554-75496634 1.0000 80 chr9:131940255-131940335 1.0000 80 chr7:101458637-101458717 1.0000 80 chr1:27670014-27670094 1.0000 80 chr20:34681053-34681133 1.0000 80 chr19:1826329-1826409 1.0000 80 chr4:140085147-140085227 1.0000 80 chr7:104873442-104873522 1.0000 80 chr22:30615838-30615918 1.0000 80 chr1:149514166-149514246 1.0000 80 chr7:2354455-2354535 1.0000 80 chr2:97148145-97148225 1.0000 80 chr12:32182438-32182518 1.0000 80 chr1:194828975-194829055 1.0000 80 chr7:139684580-139684660 1.0000 80 chr2:189156399-189156479 1.0000 80 chr17:62091884-62091964 1.0000 80 chr10:82422459-82422539 1.0000 80 chr6:50995131-50995211 1.0000 80 chr19:10539842-10539922 1.0000 80 chr11:93779633-93779713 1.0000 80 chr22:25029639-25029719 1.0000 80 chrX:102407396-102407476 1.0000 80 chr10:72337078-72337158 1.0000 80 chr19:17578674-17578754 1.0000 80 chr3:171178159-171178239 1.0000 80 chr19:2841100-2841180 1.0000 80 chr1:246345583-246345663 1.0000 80 chr15:41222801-41222881 1.0000 80 chr15:90605442-90605522 1.0000 80 chr5:79107074-79107154 1.0000 80 chr19:45909150-45909230 1.0000 80 chr19:49496899-49496979 1.0000 80 chr5:67621238-67621318 1.0000 80 chr6:32158085-32158165 1.0000 80 chr2:47499554-47499634 1.0000 80 chr9:35111819-35111899 1.0000 80 chr6:43872679-43872759 1.0000 80 chr11:63339652-63339732 1.0000 80 chr8:17925169-17925249 1.0000 80 chr8:126525383-126525463 1.0000 80 chr1:43284799-43284879 1.0000 80 chr19:10531732-10531812 1.0000 80 chr9:123964359-123964439 1.0000 80 chr1:7765177-7765257 1.0000 80 chr17:8067734-8067814 1.0000 80 chr6:44042322-44042402 1.0000 80 chr1:203593426-203593506 1.0000 80 chr12:28343778-28343858 1.0000 80 chr7:158768436-158768516 1.0000 80 chr21:36282144-36282224 1.0000 80 chr8:67560692-67560772 1.0000 80 chr11:118436708-11843678 1.0000 80 chr19:45090976-45091056 1.0000 80 chr19:34286532-34286612 1.0000 80 chr17:38279807-38279887 1.0000 80 chr1:31200757-31200837 1.0000 80 chr19:12893301-12893381 1.0000 80 chr20:32297836-32297916 1.0000 80 chr20:23136531-23136611 1.0000 80 chr10:52381980-52382060 1.0000 80 chr8:106377168-106377248 1.0000 80 chr15:90732361-90732441 1.0000 80 chr1:65953656-65953736 1.0000 80 chr17:48891117-48891197 1.0000 80 chr6:119670785-119670865 1.0000 80 chr21:48055924-48056004 1.0000 80 chr19:35626527-35626607 1.0000 80 chr1:183604954-183605034 1.0000 80 chr1:206674601-206674681 1.0000 80 chr19:2056553-2056633 1.0000 80 chr12:114225994-11422607 1.0000 80 chr1:100791989-100792069 1.0000 80 chr12:46777305-46777385 1.0000 80 chr1:148604897-148604977 1.0000 80 chr3:72371585-72371665 1.0000 80 chr12:51714978-51715058 1.0000 80 chr10:30900522-30900602 1.0000 80 chr8:144486088-144486168 1.0000 80 chr7:142654365-142654445 1.0000 80 chr16:90098811-90098891 1.0000 80 chr9:100174163-100174243 1.0000 80 chr6:36648319-36648399 1.0000 80 chr6:119215186-119215266 1.0000 80 chr19:13049046-13049126 1.0000 80 chr1:113683792-113683872 1.0000 80 chr19:2945311-2945391 1.0000 80 chr19:48828622-48828702 1.0000 80 chr11:118482032-11848211 1.0000 80 chr1:33220059-33220139 1.0000 80 chr7:945277-945357 1.0000 80 chr9:127591264-127591344 1.0000 80 chr11:5186180-5186260 1.0000 80 chr5:154062179-154062259 1.0000 80 chr17:38225381-38225461 1.0000 80 chr19:55813452-55813532 1.0000 80 chr7:100303152-100303232 1.0000 80 chr17:40828023-40828103 1.0000 80 chr9:131182542-131182622 1.0000 80 chr6:150591075-150591155 1.0000 80 chr1:25566316-25566396 1.0000 80 chr18:53257173-53257253 1.0000 80 chr22:20004633-20004713 1.0000 80 chr17:79372867-79372947 1.0000 80 chr3:195424769-195424849 1.0000 80 chr17:65560086-65560166 1.0000 80 chr12:104994729-10499480 1.0000 80 chr17:47319283-47319363 1.0000 80 chr11:75063006-75063086 1.0000 80 chr10:72430787-72430867 1.0000 80 chr9:19174580-19174660 1.0000 80 chr6:27124796-27124876 1.0000 80 chr17:56441778-56441858 1.0000 80 chr3:12526190-12526270 1.0000 80 chr1:178994782-178994862 1.0000 80 chr5:37672399-37672479 1.0000 80 chr1:9294516-9294596 1.0000 80 chr1:32403236-32403316 1.0000 80 chr3:9941191-9941271 1.0000 80 chr4:38663853-38663933 1.0000 80 chr21:40742354-40742434 1.0000 80 chrX:70366015-70366095 1.0000 80 chr8:26240361-26240441 1.0000 80 chr7:138145089-138145169 1.0000 80 chr1:201893613-201893693 1.0000 80 chr2:220436866-220436946 1.0000 80 chr15:51057438-51057518 1.0000 80 chr12:56473847-56473927 1.0000 80 chr17:78830428-78830508 1.0000 80 chr20:61062735-61062815 1.0000 80 chr15:66130070-66130150 1.0000 80 chr16:84681827-84681907 1.0000 80 chr4:78783101-78783181 1.0000 80 chr17:77784338-77784418 1.0000 80 chr9:4852563-4852643 1.0000 80 chr7:155082918-155082998 1.0000 80 chr1:167838938-167839018 1.0000 80 chr4:120375832-120375912 1.0000 80 chr21:46493679-46493759 1.0000 80 chr7:148788020-148788100 1.0000 80 chr19:4343252-4343332 1.0000 80 chr16:1523107-1523187 1.0000 80 chr1:167832581-167832661 1.0000 80 chr7:76009502-76009582 1.0000 80 chr10:45848033-45848113 1.0000 80 chr15:70391989-70392069 1.0000 80 chr17:28728330-28728410 1.0000 80 chr20:51797627-51797707 1.0000 80 chr1:231181685-231181765 1.0000 80 chr6:43422577-43422657 1.0000 80 chr3:156392114-156392194 1.0000 80 chr11:85946020-85946100 1.0000 80 chr2:68694780-68694860 1.0000 80 chr2:111482447-111482527 1.0000 80 chr6:34164243-34164323 1.0000 80 chr5:180618399-180618479 1.0000 80 chr6:125623216-125623296 1.0000 80 chr19:18668593-18668673 1.0000 80 chr1:244514373-244514453 1.0000 80 chr5:10307836-10307916 1.0000 80 chrX:135992424-135992504 1.0000 80 chr8:74252531-74252611 1.0000 80 chr1:223894939-223895019 1.0000 80 chr22:27038587-27038667 1.0000 80 chrX:109245736-109245816 1.0000 80 chr17:55063239-55063319 1.0000 80 chr20:46061768-46061848 1.0000 80 chr12:48099367-48099447 1.0000 80 chr19:7571617-7571697 1.0000 80 chr2:201374912-201374992 1.0000 80 chr7:24833820-24833900 1.0000 80 chr8:41685287-41685367 1.0000 80 chr19:1203703-1203783 1.0000 80 chr1:35602522-35602602 1.0000 80 chr17:73120470-73120550 1.0000 80 chr1:17222637-17222717 1.0000 80 chr1:93258130-93258210 1.0000 80 chr3:142902583-142902663 1.0000 80 chr6:3064101-3064181 1.0000 80 chr1:156833085-156833165 1.0000 80 chr6:30655240-30655320 1.0000 80 chr1:175094718-175094798 1.0000 80 chr22:21340805-21340885 1.0000 80 chr17:42215583-42215663 1.0000 80 chr2:33824540-33824620 1.0000 80 chr6:28771326-28771406 1.0000 80 chr12:31478888-31478968 1.0000 80 chr10:50420922-50421002 1.0000 80 chr11:73088258-73088338 1.0000 80 chr1:243265028-243265108 1.0000 80 chr4:40196995-40197075 1.0000 80 chr7:99765615-99765695 1.0000 80 chr17:38692818-38692898 1.0000 80 chr10:74856762-74856842 1.0000 80 chr19:17561431-17561511 1.0000 80 chr4:15155410-15155490 1.0000 80 chr10:73648789-73648869 1.0000 80 chr10:70849596-70849676 1.0000 80 chr8:145673869-145673949 1.0000 80 chr1:145209066-145209146 1.0000 80 chr9:134249104-134249184 1.0000 80 chr19:38715095-38715175 1.0000 80 chr12:132970789-13297086 1.0000 80 chr19:6516320-6516400 1.0000 80 chr2:202652334-202652414 1.0000 80 chr22:21448096-21448176 1.0000 80 chr9:94909585-94909665 1.0000 80 chr7:50423605-50423685 1.0000 80 chr6:44102228-44102308 1.0000 80 chr20:49094994-49095074 1.0000 80 chr12:7052991-7053071 1.0000 80 chr1:207178423-207178503 1.0000 80 chr9:140398447-140398527 1.0000 80 chr2:9323736-9323816 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_MTA2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/MTA2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.236 C 0.264 G 0.296 T 0.204 Background letter frequencies (from file dataset with add-one prior applied): A 0.236 C 0.264 G 0.296 T 0.204 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AGAAAGAA MEME-1 width = 8 sites = 83 llr = 629 E-value = 4.0e-030 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGAAAGAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A a:789:87 pos.-specific C :::::::: probability G :a311922 matrix T :::1:1:1 bits 2.3 2.1 1.8 ** 1.6 ** * Relative 1.4 ** ** Entropy 1.1 ******* (10.9 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AGAAAGAA consensus G GG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAAAGAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:9323736-9323816 29 1.51e-05 agagacagcg agaaagaa agaaagaaaa chr9:140398447-140398527 6 1.51e-05 gaaga agaaagaa gaaggaagaa chr10:70849596-70849676 58 1.51e-05 tctgtcagaa agaaagaa agagagagag chr10:50420922-50421002 11 1.51e-05 aaagaaagaa agaaagaa agGAGAATGC chr19:1203703-1203783 73 1.51e-05 gaggaggagg agaaagaa chr8:74252531-74252611 56 1.51e-05 agaaagagag agaaagaa aataaaggaa chr11:85946020-85946100 60 1.51e-05 ggaatgaaaa agaaagaa aaagaaagga chr1:231181685-231181765 17 1.51e-05 agggaaagaa agaaagaa agaaagaggg chr10:45848033-45848113 34 1.51e-05 agagagaaag agaaagaa agaaagaaag chr21:40742354-40742434 38 1.51e-05 agagagagag agaaagaa tgagagagcg chr6:27124796-27124876 23 1.51e-05 tgagagagag agaaagaa agaaggaagg chr8:144486088-144486168 27 1.51e-05 agaaagaaaa agaaagaa agaaagaaag chr10:30900522-30900602 13 1.51e-05 aaagaaagaa agaaagaa agagaaagaa chr12:114225994-11422607 36 1.51e-05 ggaaggggaa agaaagaa agagagaaag chr20:23136531-23136611 13 1.51e-05 aaagaaagaa agaaagaa aaagaaagag chr19:45090976-45091056 13 1.51e-05 agagagagaa agaaagaa agaaagaaag chr1:203593426-203593506 11 1.51e-05 aaagaaagaa agaaagaa agagggaggg chr11:63339652-63339732 26 1.51e-05 agaaagagga agaaagaa agagagaaag chrX:102407396-102407476 37 1.51e-05 gagagaagaa agaaagaa gaaagagaaa chr19:10539842-10539922 58 1.51e-05 gaaaaggaaa agaaagaa agagagggac chr17:62091884-62091964 30 1.51e-05 gaaggaagga agaaagaa agagagagag chr7:139684580-139684660 28 1.51e-05 gaagggggaa agaaagaa aagaagaaga chr12:32182438-32182518 37 1.51e-05 ggaaaaggaa agaaagaa agcaaaagaa chr2:97148145-97148225 25 1.51e-05 ggagggaaag agaaagaa tgaaagagaa chr7:44587138-44587218 70 1.51e-05 ggagagagag agaaagaa aga chr14:75953088-75953168 25 1.51e-05 gaggaaagga agaaagaa acaaagagga chr6:28771326-28771406 41 3.41e-05 ggaaggaagg agaaagag ggaggaaggg chr3:142902583-142902663 26 3.41e-05 agggagtggg agaaagag agagagagag chr20:46061768-46061848 8 3.41e-05 gaagaag agaaagag aagagggagt chr17:56441778-56441858 21 3.41e-05 TAGCAGTGCC AGAAAGAG AACAAAAAGC chr5:67621238-67621318 49 3.41e-05 gaggaggagg agaaagag gagaaggagg chr19:17578674-17578754 54 3.41e-05 agaaggaggg agaaagag agaaggagga chr4:140085147-140085227 30 3.41e-05 caagagaaag agaaagag aaggaaggga chr6:3229198-3229278 69 3.41e-05 agagagagag agaaagag agag chr6:150630110-150630190 22 3.41e-05 aaggaaggaa agaaagag gaaggaaaga chr2:111482447-111482527 62 5.31e-05 gagggaagga aggaagaa cggagggagg chr15:90732361-90732441 30 5.31e-05 gagcgagggc aggaagaa aagggaagga chr11:118436708-11843678 21 5.31e-05 CTCTCCACGC AGGAAGAA GATCAAGGAG chr6:27468014-27468094 35 5.31e-05 aaggaaagaa aggaagaa aagaaaagag chr3:138476419-138476499 17 5.31e-05 GAAAAGAgga aggaagaa aggaaggaag chr1:207178423-207178503 64 7.21e-05 AAGCAAGAAC AGAAAGGA GCAAGTCAG chr3:156392114-156392194 49 7.21e-05 TGCGGACGCG AGAAAGGA CACGCCCCCT chr7:945277-945357 22 7.21e-05 aggagaaagg agaaagga gaaagggaaa chr1:206674601-206674681 16 7.21e-05 GGTgggagtg agaaagga gagagggagg chr7:104873442-104873522 24 7.21e-05 agggagggaa agaaagga aaagagaaga chr19:1826329-1826409 73 7.21e-05 ggaggggagg agaaagga chr19:48828622-48828702 15 9.11e-05 aacgggagca agagagaa ggaggcccag chr15:66130070-66130150 3 1.02e-04 cc agaaataa ttgtccaaac chr11:5186180-5186260 29 1.02e-04 gttggggcac agaaataa gggatcgggg chr22:27038587-27038667 21 1.34e-04 gagaggggag agaaagat ggggagagac chr5:180618399-180618479 36 1.34e-04 GGGAGCGCGC AGAAGGAA GTGAGCGGGG chr7:142654365-142654445 44 1.34e-04 ggtaagggag agaaggaa tgtacgggag chr4:78783101-78783181 1 1.47e-04 . AGATAGAA TGAACCAAGT chr19:34286532-34286612 56 1.70e-04 AGGAAACagg aggaagag gaaggggagg chr1:43284799-43284879 21 1.70e-04 GGAAACGGTG AGGAAGAG GATAAGTTAG chr17:19091383-19091463 26 1.70e-04 gaaaaccacg aggaagag aggtagcgtt chr1:201893613-201893693 26 2.18e-04 gaaggaagca aggaagga gggaggaagg chr7:99765615-99765695 6 2.42e-04 gaaag agagagag acacacacac chr2:220436866-220436946 34 5.01e-04 TCTGCGTCAG AGATAGGA GGTCTCAATG chr2:202652334-202652414 17 5.14e-04 tgggaaggtg agagataa gataagagcc chr1:35602522-35602602 7 5.14e-04 gagcac agagataa gaggttgggg chr8:17925169-17925249 72 5.14e-04 CCACACTCAC AGAGATAA A chr1:25566316-25566396 6 5.56e-04 CCCCC AGGAAGGG CCGGGTTACG chr19:2945311-2945391 33 5.56e-04 CGGGGAGGAG AGGAAGGG CACGGAGTCC chr1:228674433-228674513 19 5.56e-04 GGGTCCCTGA AGGAAGGG TGCACGCAGG chr17:65560086-65560166 10 5.97e-04 taatagata agagagat ggatagatag chr6:32158085-32158165 40 5.97e-04 ggaggagggg agagggaa gaggggatga chr15:51057438-51057518 27 6.81e-04 gaaagttggg ggaaagag ggtggaaaag chr22:21340805-21340885 20 8.49e-04 acagatcgat agatagat gataggtaga chr9:4852563-4852643 69 8.49e-04 GGACTTGTGG AGATGGAA CGAA chr17:48891117-48891197 2 8.49e-04 t agatagat agatgacaga chr19:10531732-10531812 73 8.49e-04 ATGGGCGCGC AGGGAGGA chr19:45909150-45909230 24 8.49e-04 TCCCTGGGGC AGGGAGGA GTCGCCGATC chr19:49496899-49496979 40 9.12e-04 GAGCAAAAGG AGGAGGAG CCAGGAGACA chrX:109245736-109245816 57 1.06e-03 actggacggg aggaggga ggcagtggcg chr6:43422577-43422657 3 1.06e-03 CC Aggaggga cggacggatg chr7:128417948-128418028 14 1.14e-03 catagccaaa agaaaaag caagcaatag chr7:123174933-123175013 12 1.14e-03 gagcgcggca ggaaataa gggaaggagc chr9:131940255-131940335 33 1.31e-03 GATCTTGCGC AGGGAGAT GCTGATCAGG chr8:126525383-126525463 64 1.39e-03 AGGGTGACTC AGAGGGGA AGCCCCTGC chr19:6516320-6516400 69 1.72e-03 ACAGGAAAGT GGGAAGGA CTGA chr1:27670014-27670094 18 1.89e-03 AGGTGGTGGC AGGAGGGG ACCCAGGCTG chr12:54764020-54764100 27 1.98e-03 AGGTCAGTAC GGGGAGAA GAGGATGGGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAAAGAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:9323736-9323816 1.5e-05 28_[+1]_44 chr9:140398447-140398527 1.5e-05 5_[+1]_67 chr10:70849596-70849676 1.5e-05 57_[+1]_15 chr10:50420922-50421002 1.5e-05 10_[+1]_62 chr19:1203703-1203783 1.5e-05 72_[+1] chr8:74252531-74252611 1.5e-05 55_[+1]_17 chr11:85946020-85946100 1.5e-05 59_[+1]_13 chr1:231181685-231181765 1.5e-05 16_[+1]_56 chr10:45848033-45848113 1.5e-05 33_[+1]_39 chr21:40742354-40742434 1.5e-05 37_[+1]_35 chr6:27124796-27124876 1.5e-05 22_[+1]_50 chr8:144486088-144486168 1.5e-05 26_[+1]_46 chr10:30900522-30900602 1.5e-05 12_[+1]_60 chr12:114225994-11422607 1.5e-05 35_[+1]_37 chr20:23136531-23136611 1.5e-05 12_[+1]_60 chr19:45090976-45091056 1.5e-05 12_[+1]_60 chr1:203593426-203593506 1.5e-05 10_[+1]_62 chr11:63339652-63339732 1.5e-05 25_[+1]_47 chrX:102407396-102407476 1.5e-05 36_[+1]_36 chr19:10539842-10539922 1.5e-05 57_[+1]_15 chr17:62091884-62091964 1.5e-05 29_[+1]_43 chr7:139684580-139684660 1.5e-05 27_[+1]_45 chr12:32182438-32182518 1.5e-05 36_[+1]_36 chr2:97148145-97148225 1.5e-05 24_[+1]_48 chr7:44587138-44587218 1.5e-05 69_[+1]_3 chr14:75953088-75953168 1.5e-05 24_[+1]_48 chr6:28771326-28771406 3.4e-05 40_[+1]_32 chr3:142902583-142902663 3.4e-05 25_[+1]_47 chr20:46061768-46061848 3.4e-05 7_[+1]_65 chr17:56441778-56441858 3.4e-05 20_[+1]_52 chr5:67621238-67621318 3.4e-05 48_[+1]_24 chr19:17578674-17578754 3.4e-05 53_[+1]_19 chr4:140085147-140085227 3.4e-05 29_[+1]_43 chr6:3229198-3229278 3.4e-05 68_[+1]_4 chr6:150630110-150630190 3.4e-05 21_[+1]_51 chr2:111482447-111482527 5.3e-05 61_[+1]_11 chr15:90732361-90732441 5.3e-05 29_[+1]_43 chr11:118436708-11843678 5.3e-05 20_[+1]_52 chr6:27468014-27468094 5.3e-05 34_[+1]_38 chr3:138476419-138476499 5.3e-05 16_[+1]_56 chr1:207178423-207178503 7.2e-05 63_[+1]_9 chr3:156392114-156392194 7.2e-05 48_[+1]_24 chr7:945277-945357 7.2e-05 21_[+1]_51 chr1:206674601-206674681 7.2e-05 15_[+1]_57 chr7:104873442-104873522 7.2e-05 23_[+1]_49 chr19:1826329-1826409 7.2e-05 72_[+1] chr19:48828622-48828702 9.1e-05 14_[+1]_58 chr15:66130070-66130150 0.0001 2_[+1]_70 chr11:5186180-5186260 0.0001 28_[+1]_44 chr22:27038587-27038667 0.00013 20_[+1]_52 chr5:180618399-180618479 0.00013 35_[+1]_37 chr7:142654365-142654445 0.00013 43_[+1]_29 chr4:78783101-78783181 0.00015 [+1]_72 chr19:34286532-34286612 0.00017 55_[+1]_17 chr1:43284799-43284879 0.00017 20_[+1]_52 chr17:19091383-19091463 0.00017 25_[+1]_47 chr1:201893613-201893693 0.00022 25_[+1]_47 chr7:99765615-99765695 0.00024 5_[+1]_67 chr2:220436866-220436946 0.0005 33_[+1]_39 chr2:202652334-202652414 0.00051 16_[+1]_56 chr1:35602522-35602602 0.00051 6_[+1]_66 chr8:17925169-17925249 0.00051 71_[+1]_1 chr1:25566316-25566396 0.00056 5_[+1]_67 chr19:2945311-2945391 0.00056 32_[+1]_40 chr1:228674433-228674513 0.00056 18_[+1]_54 chr17:65560086-65560166 0.0006 9_[+1]_63 chr6:32158085-32158165 0.0006 39_[+1]_33 chr15:51057438-51057518 0.00068 26_[+1]_46 chr22:21340805-21340885 0.00085 19_[+1]_53 chr9:4852563-4852643 0.00085 68_[+1]_4 chr17:48891117-48891197 0.00085 1_[+1]_71 chr19:10531732-10531812 0.00085 72_[+1] chr19:45909150-45909230 0.00085 23_[+1]_49 chr19:49496899-49496979 0.00091 39_[+1]_33 chrX:109245736-109245816 0.0011 56_[+1]_16 chr6:43422577-43422657 0.0011 2_[+1]_70 chr7:128417948-128418028 0.0011 13_[+1]_59 chr7:123174933-123175013 0.0011 11_[+1]_61 chr9:131940255-131940335 0.0013 32_[+1]_40 chr8:126525383-126525463 0.0014 63_[+1]_9 chr19:6516320-6516400 0.0017 68_[+1]_4 chr1:27670014-27670094 0.0019 17_[+1]_55 chr12:54764020-54764100 0.002 26_[+1]_46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAAAGAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGAAAGAA width=8 seqs=83 chr2:9323736-9323816 ( 29) AGAAAGAA 1 chr9:140398447-140398527 ( 6) AGAAAGAA 1 chr10:70849596-70849676 ( 58) AGAAAGAA 1 chr10:50420922-50421002 ( 11) AGAAAGAA 1 chr19:1203703-1203783 ( 73) AGAAAGAA 1 chr8:74252531-74252611 ( 56) AGAAAGAA 1 chr11:85946020-85946100 ( 60) AGAAAGAA 1 chr1:231181685-231181765 ( 17) AGAAAGAA 1 chr10:45848033-45848113 ( 34) AGAAAGAA 1 chr21:40742354-40742434 ( 38) AGAAAGAA 1 chr6:27124796-27124876 ( 23) AGAAAGAA 1 chr8:144486088-144486168 ( 27) AGAAAGAA 1 chr10:30900522-30900602 ( 13) AGAAAGAA 1 chr12:114225994-11422607 ( 36) AGAAAGAA 1 chr20:23136531-23136611 ( 13) AGAAAGAA 1 chr19:45090976-45091056 ( 13) AGAAAGAA 1 chr1:203593426-203593506 ( 11) AGAAAGAA 1 chr11:63339652-63339732 ( 26) AGAAAGAA 1 chrX:102407396-102407476 ( 37) AGAAAGAA 1 chr19:10539842-10539922 ( 58) AGAAAGAA 1 chr17:62091884-62091964 ( 30) AGAAAGAA 1 chr7:139684580-139684660 ( 28) AGAAAGAA 1 chr12:32182438-32182518 ( 37) AGAAAGAA 1 chr2:97148145-97148225 ( 25) AGAAAGAA 1 chr7:44587138-44587218 ( 70) AGAAAGAA 1 chr14:75953088-75953168 ( 25) AGAAAGAA 1 chr6:28771326-28771406 ( 41) AGAAAGAG 1 chr3:142902583-142902663 ( 26) AGAAAGAG 1 chr20:46061768-46061848 ( 8) AGAAAGAG 1 chr17:56441778-56441858 ( 21) AGAAAGAG 1 chr5:67621238-67621318 ( 49) AGAAAGAG 1 chr19:17578674-17578754 ( 54) AGAAAGAG 1 chr4:140085147-140085227 ( 30) AGAAAGAG 1 chr6:3229198-3229278 ( 69) AGAAAGAG 1 chr6:150630110-150630190 ( 22) AGAAAGAG 1 chr2:111482447-111482527 ( 62) AGGAAGAA 1 chr15:90732361-90732441 ( 30) AGGAAGAA 1 chr11:118436708-11843678 ( 21) AGGAAGAA 1 chr6:27468014-27468094 ( 35) AGGAAGAA 1 chr3:138476419-138476499 ( 17) AGGAAGAA 1 chr1:207178423-207178503 ( 64) AGAAAGGA 1 chr3:156392114-156392194 ( 49) AGAAAGGA 1 chr7:945277-945357 ( 22) AGAAAGGA 1 chr1:206674601-206674681 ( 16) AGAAAGGA 1 chr7:104873442-104873522 ( 24) AGAAAGGA 1 chr19:1826329-1826409 ( 73) AGAAAGGA 1 chr19:48828622-48828702 ( 15) AGAGAGAA 1 chr15:66130070-66130150 ( 3) AGAAATAA 1 chr11:5186180-5186260 ( 29) AGAAATAA 1 chr22:27038587-27038667 ( 21) AGAAAGAT 1 chr5:180618399-180618479 ( 36) AGAAGGAA 1 chr7:142654365-142654445 ( 44) AGAAGGAA 1 chr4:78783101-78783181 ( 1) AGATAGAA 1 chr19:34286532-34286612 ( 56) AGGAAGAG 1 chr1:43284799-43284879 ( 21) AGGAAGAG 1 chr17:19091383-19091463 ( 26) AGGAAGAG 1 chr1:201893613-201893693 ( 26) AGGAAGGA 1 chr7:99765615-99765695 ( 6) AGAGAGAG 1 chr2:220436866-220436946 ( 34) AGATAGGA 1 chr2:202652334-202652414 ( 17) AGAGATAA 1 chr1:35602522-35602602 ( 7) AGAGATAA 1 chr8:17925169-17925249 ( 72) AGAGATAA 1 chr1:25566316-25566396 ( 6) AGGAAGGG 1 chr19:2945311-2945391 ( 33) AGGAAGGG 1 chr1:228674433-228674513 ( 19) AGGAAGGG 1 chr17:65560086-65560166 ( 10) AGAGAGAT 1 chr6:32158085-32158165 ( 40) AGAGGGAA 1 chr15:51057438-51057518 ( 27) GGAAAGAG 1 chr22:21340805-21340885 ( 20) AGATAGAT 1 chr9:4852563-4852643 ( 69) AGATGGAA 1 chr17:48891117-48891197 ( 2) AGATAGAT 1 chr19:10531732-10531812 ( 73) AGGGAGGA 1 chr19:45909150-45909230 ( 24) AGGGAGGA 1 chr19:49496899-49496979 ( 40) AGGAGGAG 1 chrX:109245736-109245816 ( 57) AGGAGGGA 1 chr6:43422577-43422657 ( 3) AGGAGGGA 1 chr7:128417948-128418028 ( 14) AGAAAAAG 1 chr7:123174933-123175013 ( 12) GGAAATAA 1 chr9:131940255-131940335 ( 33) AGGGAGAT 1 chr8:126525383-126525463 ( 64) AGAGGGGA 1 chr19:6516320-6516400 ( 69) GGGAAGGA 1 chr1:27670014-27670094 ( 18) AGGAGGGG 1 chr12:54764020-54764100 ( 27) GGGGAGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAAAGAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.06703 E= 4.0e-030 201 -1302 -262 -1302 -1302 -1302 176 -1302 166 -1302 -23 -1302 175 -1302 -103 -176 192 -1302 -145 -1302 -429 -1302 163 -150 173 -1302 -45 -1302 157 -1302 -30 -176 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAAAGAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 83 E= 4.0e-030 0.951807 0.000000 0.048193 0.000000 0.000000 0.000000 1.000000 0.000000 0.746988 0.000000 0.253012 0.000000 0.795181 0.000000 0.144578 0.060241 0.891566 0.000000 0.108434 0.000000 0.012048 0.000000 0.915663 0.072289 0.783133 0.000000 0.216867 0.000000 0.698795 0.000000 0.240964 0.060241 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAAAGAA MEME-1 regular expression -------------------------------------------------------------------------------- AG[AG]AAG[AG][AG] -------------------------------------------------------------------------------- Time 4.96 secs. ******************************************************************************** ******************************************************************************** MOTIF CTCTYYCT MEME-2 width = 8 sites = 82 llr = 616 E-value = 8.2e-027 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTCTYYCT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 839:4583 probability G ::::::2: matrix T 271a65:7 bits 2.3 2.1 * 1.8 * 1.6 ** Relative 1.4 *** Entropy 1.1 ******** (10.8 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTCTTCCT consensus TC CT C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTYYCT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:175094718-175094798 15 6.50e-06 ctctttcttt ctctttct ttctttctct chr1:223894939-223895019 31 6.50e-06 ctctctctct ctctttct atctctctct chr10:72430787-72430867 16 6.50e-06 ctctctctct ctctttct ctctctctct chr9:127591264-127591344 22 6.50e-06 tccttccttc ctctttct ttctttctct chr1:65953656-65953736 49 6.50e-06 tccttccttt ctctttct ttctttgttt chr6:43872679-43872759 48 6.50e-06 ttctttccgt ctctttct ctttctttct chr22:30615838-30615918 50 6.50e-06 tccaccctct ctctttct ttctttcctt chr4:40196995-40197075 52 1.49e-05 ccctcccctt ctcttcct tttccttccc chr1:156833085-156833165 19 1.49e-05 tctctctgac ctcttcct gtcagtttct chr7:24833820-24833900 23 1.49e-05 tcctctttgt ctcttcct gtctctcttg chr17:55063239-55063319 38 1.49e-05 TTCTTATCGT CTCTTCCT TCCCTCACCC chr6:125623216-125623296 7 1.49e-05 ctgccc ctcttcct gctccccctc chr17:28728330-28728410 72 1.49e-05 cttcttcctc ctcttcct c chr9:19174580-19174660 63 1.49e-05 atccctttct ctcttcct tccttcctct chr3:195424769-195424849 5 1.49e-05 ctcc ctcttcct ggctaaacgt chr8:106377168-106377248 20 1.49e-05 CTTTGGTTCA CTCTTCCT TCCTTGTCAC chr1:246345583-246345663 65 1.49e-05 TCTCTATCAC CTCTTCCT CCCTGATA chr10:72337078-72337158 33 1.49e-05 ttcattcttt ctcttcct tttttctttt chr15:63804517-63804597 11 1.49e-05 cctcttcttc ctcttcct cctcttcctc chr15:66130070-66130150 24 2.33e-05 tccaaactca ctctctct ctctccactt chr12:56473847-56473927 36 2.33e-05 ccctctctct ctctctct cACACACACA chr17:38225381-38225461 59 2.33e-05 ccctccctct ctctctct cacacacaca chr15:90605442-90605522 18 2.33e-05 ctttctctct ctctctct ctGATATGTC chr6:50995131-50995211 46 2.33e-05 GCctctctct ctctctct ctctctctct chr7:75496554-75496634 47 2.33e-05 ctctctctct ctctctct GTGTGTGTGT chr4:15155410-15155490 30 3.68e-05 acccttccct ttctttct catttcactg chr19:7571617-7571697 9 3.68e-05 gctcctcc ctctttcc cagttcctcc chr1:100791989-100792069 67 3.68e-05 ccttccttct ttctttct ttcctt chr6:119670785-119670865 1 3.68e-05 . CTCTTTCC TAGGCTGGGC chr21:36282144-36282224 36 3.68e-05 cctccagttc ctctttcc tttcttcttc chr3:9941191-9941271 53 5.61e-05 ctgctgcctt ctctccct ccctcctttc chr11:118482032-11848211 16 5.61e-05 ctctccttat ctctccct ttactttcgc chr1:31200757-31200837 28 5.61e-05 tctagtcttt ccctttct ccccctctcc chrX:135992424-135992504 39 7.34e-05 tttttctagt ctcttccc ctctgctctt chr4:38663853-38663933 33 7.34e-05 GCCTATTTCG CTCTTCCC CTTTGCGTCC chr1:113683792-113683872 49 7.34e-05 cttcttcccc ctcttccc cacctcctca chr1:183604954-183605034 6 7.34e-05 CCCGT TTCTTCCT CCTCAGGTTC chr11:93779633-93779713 46 7.34e-05 CACACTAGCT TTCTTCCT TGTCACTTAG chr1:93258130-93258210 67 8.43e-05 ttcttttctc cccttcct ccctcc chr12:104994729-10499480 22 8.43e-05 ttcttccctt cccttcct tccttcgctt chr19:2056553-2056633 25 8.43e-05 tcctctcctc cccttcct ccctccttcc chr19:45909150-45909230 46 8.43e-05 CCGATCAGGT CCCTTCCT GAAAGTCATC chr6:3229198-3229278 16 9.16e-05 AGGAACTGGT CTCTTTGT TACTTTTCGC chr9:94909585-94909665 37 1.09e-04 ctttcttccc ttctctct gtccttcccc chr15:70391989-70392069 73 1.36e-04 GCCGAAGGGG CTCTTCGT chr7:50423605-50423685 17 1.81e-04 TAGATAAGGA CTTTTTCT CAGCAACTTC chr5:154062179-154062259 62 1.81e-04 CACGCCACCC TCCTTTCT CCGCCCCTGC chr10:52381980-52382060 50 1.81e-04 ACGCCCCGCC CTCTCCCC TTCTGCACAG chr15:41222801-41222881 11 1.81e-04 TCCCCCCACC CCCTTTCC CAGGGTACCT chr12:132111987-13211206 5 1.81e-04 TCCC CTCTCCCC ATCCGCCCGA chr7:138145089-138145169 72 2.03e-04 GGTTTGCTTT CCCTCCCT C chr6:30655240-30655320 35 2.32e-04 GTGTCCAGAT CCCTTCCC CCAGCTCGCC chr17:79372867-79372947 7 2.32e-04 CCAGGC CTTTTCCT CCGAGACACC chr22:20004633-20004713 31 2.32e-04 GAGCCGGCGC CCCTTCCC CGGACTCTGG chr20:32297836-32297916 59 2.32e-04 tgaaccacac cccttccc cgactcccac chr1:244514373-244514453 71 2.57e-04 tgaAACTTTC TTCTTTGT AC chr1:194828975-194829055 35 2.57e-04 tgttctttcg ctctttgc aataaatctt chr2:71681047-71681127 40 2.57e-04 TTTCCGAGCC CTCTTTGC GCCCTGGGCG chr21:38446107-38446187 10 2.87e-04 AGGTGGCCC CCCTTTGT GTTACTGCCC chr3:5021297-5021377 30 3.35e-04 ACCCCCGAAG CCCTCTCC AGGGCAGTCC chr17:77784338-77784418 57 4.21e-04 CCCACGCACC CCCTCCCC AAACCCGGCG chr1:32403236-32403316 13 4.21e-04 cacacccata ccctcccc tgccctcacc chr19:12893301-12893381 28 4.21e-04 CCGGGAGGCG CCCTCCCC GCGTTGCGGG chr8:17925169-17925249 56 4.46e-04 TCTTACCATT TCCTTCCC ACACTCACAG chr17:38692818-38692898 44 4.93e-04 CACGCATGGT CTCTCTGC AGCATAGTCC chr9:134249104-134249184 27 5.12e-04 GAGCCGTCGT TTCTTTGC GTGGATCTTT chr20:61062735-61062815 4 5.63e-04 TTT TCCTTTGT TGGTTTTGCC chr8:126525383-126525463 10 6.12e-04 TGTTCCTGT CCCTCCGT GTTCCCGTGG chr19:8428464-8428544 7 6.12e-04 cttttc ttttctct tctttcattt chr21:48055924-48056004 32 6.58e-04 CTCTGTCACG CCCTTCGC GGCCACGCCC chr19:56159814-56159894 9 7.03e-04 CGCGTGAC CTTTCCCC GTACTGCGCA chr12:49582518-49582598 13 7.03e-04 CCGCCTTTGT TCCTCCCC AGCGCTCTGC chr9:131182542-131182622 24 7.31e-04 CTCAGGGGGA CTCCCTCT GCGCCCCCCA chr3:72371585-72371665 70 7.31e-04 TCCCTGTTGG CCTTCCCT CCT chr19:17561431-17561511 71 8.23e-04 caacacgtgt ttcctcct gc chr14:73714269-73714349 19 8.70e-04 GAGTCTCATG TCCTCTGT GCGTGTGTGT chr1:17222637-17222717 49 9.03e-04 GGTCATATCT TTTTTTGT TTTGGTTTGT chr6:119215186-119215266 9 9.03e-04 TCACTTTG TTCTCCGC CTTTGTCCTA chr17:19091383-19091463 42 9.59e-04 agaggtagcg ttttctcc tgagcgtgaa chr11:1439654-1439734 33 1.00e-03 GTTGGCTGTT TCTTCTCT TGAGAGTGGG chr6:36648319-36648399 4 1.08e-03 CTA CTCCCTCC AGCGGTCCGA chrX:70366015-70366095 64 1.53e-03 acaTTCTCAT TCCCCTCT CGTGGTGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTYYCT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:175094718-175094798 6.5e-06 14_[+2]_58 chr1:223894939-223895019 6.5e-06 30_[+2]_42 chr10:72430787-72430867 6.5e-06 15_[+2]_57 chr9:127591264-127591344 6.5e-06 21_[+2]_51 chr1:65953656-65953736 6.5e-06 48_[+2]_24 chr6:43872679-43872759 6.5e-06 47_[+2]_25 chr22:30615838-30615918 6.5e-06 49_[+2]_23 chr4:40196995-40197075 1.5e-05 51_[+2]_21 chr1:156833085-156833165 1.5e-05 18_[+2]_54 chr7:24833820-24833900 1.5e-05 22_[+2]_50 chr17:55063239-55063319 1.5e-05 37_[+2]_35 chr6:125623216-125623296 1.5e-05 6_[+2]_66 chr17:28728330-28728410 1.5e-05 71_[+2]_1 chr9:19174580-19174660 1.5e-05 62_[+2]_10 chr3:195424769-195424849 1.5e-05 4_[+2]_68 chr8:106377168-106377248 1.5e-05 19_[+2]_53 chr1:246345583-246345663 1.5e-05 64_[+2]_8 chr10:72337078-72337158 1.5e-05 32_[+2]_40 chr15:63804517-63804597 1.5e-05 10_[+2]_62 chr15:66130070-66130150 2.3e-05 23_[+2]_49 chr12:56473847-56473927 2.3e-05 35_[+2]_37 chr17:38225381-38225461 2.3e-05 58_[+2]_14 chr15:90605442-90605522 2.3e-05 17_[+2]_55 chr6:50995131-50995211 2.3e-05 45_[+2]_27 chr7:75496554-75496634 2.3e-05 46_[+2]_26 chr4:15155410-15155490 3.7e-05 29_[+2]_43 chr19:7571617-7571697 3.7e-05 8_[+2]_64 chr1:100791989-100792069 3.7e-05 66_[+2]_6 chr6:119670785-119670865 3.7e-05 [+2]_72 chr21:36282144-36282224 3.7e-05 35_[+2]_37 chr3:9941191-9941271 5.6e-05 52_[+2]_20 chr11:118482032-11848211 5.6e-05 15_[+2]_57 chr1:31200757-31200837 5.6e-05 27_[+2]_45 chrX:135992424-135992504 7.3e-05 38_[+2]_34 chr4:38663853-38663933 7.3e-05 32_[+2]_40 chr1:113683792-113683872 7.3e-05 48_[+2]_24 chr1:183604954-183605034 7.3e-05 5_[+2]_67 chr11:93779633-93779713 7.3e-05 45_[+2]_27 chr1:93258130-93258210 8.4e-05 66_[+2]_6 chr12:104994729-10499480 8.4e-05 21_[+2]_51 chr19:2056553-2056633 8.4e-05 24_[+2]_48 chr19:45909150-45909230 8.4e-05 45_[+2]_27 chr6:3229198-3229278 9.2e-05 15_[+2]_57 chr9:94909585-94909665 0.00011 36_[+2]_36 chr15:70391989-70392069 0.00014 72_[+2] chr7:50423605-50423685 0.00018 16_[+2]_56 chr5:154062179-154062259 0.00018 61_[+2]_11 chr10:52381980-52382060 0.00018 49_[+2]_23 chr15:41222801-41222881 0.00018 10_[+2]_62 chr12:132111987-13211206 0.00018 4_[+2]_68 chr7:138145089-138145169 0.0002 71_[+2]_1 chr6:30655240-30655320 0.00023 34_[+2]_38 chr17:79372867-79372947 0.00023 6_[+2]_66 chr22:20004633-20004713 0.00023 30_[+2]_42 chr20:32297836-32297916 0.00023 58_[+2]_14 chr1:244514373-244514453 0.00026 70_[+2]_2 chr1:194828975-194829055 0.00026 34_[+2]_38 chr2:71681047-71681127 0.00026 39_[+2]_33 chr21:38446107-38446187 0.00029 9_[+2]_63 chr3:5021297-5021377 0.00034 29_[+2]_43 chr17:77784338-77784418 0.00042 56_[+2]_16 chr1:32403236-32403316 0.00042 12_[+2]_60 chr19:12893301-12893381 0.00042 27_[+2]_45 chr8:17925169-17925249 0.00045 55_[+2]_17 chr17:38692818-38692898 0.00049 43_[+2]_29 chr9:134249104-134249184 0.00051 26_[+2]_46 chr20:61062735-61062815 0.00056 3_[+2]_69 chr8:126525383-126525463 0.00061 9_[+2]_63 chr19:8428464-8428544 0.00061 6_[+2]_66 chr21:48055924-48056004 0.00066 31_[+2]_41 chr19:56159814-56159894 0.0007 8_[+2]_64 chr12:49582518-49582598 0.0007 12_[+2]_60 chr9:131182542-131182622 0.00073 23_[+2]_49 chr3:72371585-72371665 0.00073 69_[+2]_3 chr19:17561431-17561511 0.00082 70_[+2]_2 chr14:73714269-73714349 0.00087 18_[+2]_54 chr1:17222637-17222717 0.0009 48_[+2]_24 chr6:119215186-119215266 0.0009 8_[+2]_64 chr17:19091383-19091463 0.00096 41_[+2]_31 chr11:1439654-1439734 0.001 32_[+2]_40 chr6:36648319-36648399 0.0011 3_[+2]_69 chrX:70366015-70366095 0.0015 63_[+2]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTYYCT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTCTYYCT width=8 seqs=82 chr1:175094718-175094798 ( 15) CTCTTTCT 1 chr1:223894939-223895019 ( 31) CTCTTTCT 1 chr10:72430787-72430867 ( 16) CTCTTTCT 1 chr9:127591264-127591344 ( 22) CTCTTTCT 1 chr1:65953656-65953736 ( 49) CTCTTTCT 1 chr6:43872679-43872759 ( 48) CTCTTTCT 1 chr22:30615838-30615918 ( 50) CTCTTTCT 1 chr4:40196995-40197075 ( 52) CTCTTCCT 1 chr1:156833085-156833165 ( 19) CTCTTCCT 1 chr7:24833820-24833900 ( 23) CTCTTCCT 1 chr17:55063239-55063319 ( 38) CTCTTCCT 1 chr6:125623216-125623296 ( 7) CTCTTCCT 1 chr17:28728330-28728410 ( 72) CTCTTCCT 1 chr9:19174580-19174660 ( 63) CTCTTCCT 1 chr3:195424769-195424849 ( 5) CTCTTCCT 1 chr8:106377168-106377248 ( 20) CTCTTCCT 1 chr1:246345583-246345663 ( 65) CTCTTCCT 1 chr10:72337078-72337158 ( 33) CTCTTCCT 1 chr15:63804517-63804597 ( 11) CTCTTCCT 1 chr15:66130070-66130150 ( 24) CTCTCTCT 1 chr12:56473847-56473927 ( 36) CTCTCTCT 1 chr17:38225381-38225461 ( 59) CTCTCTCT 1 chr15:90605442-90605522 ( 18) CTCTCTCT 1 chr6:50995131-50995211 ( 46) CTCTCTCT 1 chr7:75496554-75496634 ( 47) CTCTCTCT 1 chr4:15155410-15155490 ( 30) TTCTTTCT 1 chr19:7571617-7571697 ( 9) CTCTTTCC 1 chr1:100791989-100792069 ( 67) TTCTTTCT 1 chr6:119670785-119670865 ( 1) CTCTTTCC 1 chr21:36282144-36282224 ( 36) CTCTTTCC 1 chr3:9941191-9941271 ( 53) CTCTCCCT 1 chr11:118482032-11848211 ( 16) CTCTCCCT 1 chr1:31200757-31200837 ( 28) CCCTTTCT 1 chrX:135992424-135992504 ( 39) CTCTTCCC 1 chr4:38663853-38663933 ( 33) CTCTTCCC 1 chr1:113683792-113683872 ( 49) CTCTTCCC 1 chr1:183604954-183605034 ( 6) TTCTTCCT 1 chr11:93779633-93779713 ( 46) TTCTTCCT 1 chr1:93258130-93258210 ( 67) CCCTTCCT 1 chr12:104994729-10499480 ( 22) CCCTTCCT 1 chr19:2056553-2056633 ( 25) CCCTTCCT 1 chr19:45909150-45909230 ( 46) CCCTTCCT 1 chr6:3229198-3229278 ( 16) CTCTTTGT 1 chr9:94909585-94909665 ( 37) TTCTCTCT 1 chr15:70391989-70392069 ( 73) CTCTTCGT 1 chr7:50423605-50423685 ( 17) CTTTTTCT 1 chr5:154062179-154062259 ( 62) TCCTTTCT 1 chr10:52381980-52382060 ( 50) CTCTCCCC 1 chr15:41222801-41222881 ( 11) CCCTTTCC 1 chr12:132111987-13211206 ( 5) CTCTCCCC 1 chr7:138145089-138145169 ( 72) CCCTCCCT 1 chr6:30655240-30655320 ( 35) CCCTTCCC 1 chr17:79372867-79372947 ( 7) CTTTTCCT 1 chr22:20004633-20004713 ( 31) CCCTTCCC 1 chr20:32297836-32297916 ( 59) CCCTTCCC 1 chr1:244514373-244514453 ( 71) TTCTTTGT 1 chr1:194828975-194829055 ( 35) CTCTTTGC 1 chr2:71681047-71681127 ( 40) CTCTTTGC 1 chr21:38446107-38446187 ( 10) CCCTTTGT 1 chr3:5021297-5021377 ( 30) CCCTCTCC 1 chr17:77784338-77784418 ( 57) CCCTCCCC 1 chr1:32403236-32403316 ( 13) CCCTCCCC 1 chr19:12893301-12893381 ( 28) CCCTCCCC 1 chr8:17925169-17925249 ( 56) TCCTTCCC 1 chr17:38692818-38692898 ( 44) CTCTCTGC 1 chr9:134249104-134249184 ( 27) TTCTTTGC 1 chr20:61062735-61062815 ( 4) TCCTTTGT 1 chr8:126525383-126525463 ( 10) CCCTCCGT 1 chr19:8428464-8428544 ( 7) TTTTCTCT 1 chr21:48055924-48056004 ( 32) CCCTTCGC 1 chr19:56159814-56159894 ( 9) CTTTCCCC 1 chr12:49582518-49582598 ( 13) TCCTCCCC 1 chr9:131182542-131182622 ( 24) CTCCCTCT 1 chr3:72371585-72371665 ( 70) CCTTCCCT 1 chr19:17561431-17561511 ( 71) TTCCTCCT 1 chr14:73714269-73714349 ( 19) TCCTCTGT 1 chr1:17222637-17222717 ( 49) TTTTTTGT 1 chr6:119215186-119215266 ( 9) TTCTCCGC 1 chr17:19091383-19091463 ( 42) TTTTCTCC 1 chr11:1439654-1439734 ( 33) TCTTCTCT 1 chr6:36648319-36648399 ( 4) CTCCCTCC 1 chrX:70366015-70366095 ( 64) TCCCCTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTYYCT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.2854 E= 8.2e-027 -1300 154 -1300 18 -1300 21 -1300 177 -1300 177 -1300 -106 -1300 -243 -1300 222 -1300 42 -1300 166 -1300 96 -1300 126 -1300 165 -79 -1300 -1300 32 -1300 172 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTYYCT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 82 E= 8.2e-027 0.000000 0.768293 0.000000 0.231707 0.000000 0.304878 0.000000 0.695122 0.000000 0.902439 0.000000 0.097561 0.000000 0.048780 0.000000 0.951220 0.000000 0.353659 0.000000 0.646341 0.000000 0.512195 0.000000 0.487805 0.000000 0.829268 0.170732 0.000000 0.000000 0.329268 0.000000 0.670732 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTYYCT MEME-2 regular expression -------------------------------------------------------------------------------- [CT][TC]CT[TC][CT]C[TC] -------------------------------------------------------------------------------- Time 8.62 secs. ******************************************************************************** ******************************************************************************** MOTIF RGAAAGAA MEME-3 width = 8 sites = 54 llr = 447 E-value = 2.6e-020 ******************************************************************************** -------------------------------------------------------------------------------- Motif RGAAAGAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 5:a77:a8 pos.-specific C :::::::: probability G 5a:33a:2 matrix T :::::::: bits 2.3 2.1 * * 1.8 ** * 1.6 ** ** Relative 1.4 ** *** Entropy 1.1 ******* (12.0 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AGAAAGAA consensus G GG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAAAGAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:9323736-9323816 37 1.51e-05 cgagaaagaa agaaagaa aagaaagaga chr9:140398447-140398527 46 1.51e-05 ggaaggaaga agaaagaa gaaggaagaa chr10:50420922-50421002 3 1.51e-05 aa agaaagaa agaaagaaag chr10:45848033-45848113 6 1.51e-05 aagaa agaaagaa aaagaaagaa chr8:144486088-144486168 35 1.51e-05 aaagaaagaa agaaagaa agagagagaa chr10:30900522-30900602 23 1.51e-05 agaaagaaag agaaagaa agaaggaaag chr12:114225994-11422607 13 1.51e-05 agaaagaaag agaaagaa aggaaggaag chr20:23136531-23136611 1 1.51e-05 . agaaagaa agaaagaaag chr19:45090976-45091056 21 1.51e-05 aaagaaagaa agaaagaa aggaaggaag chr1:203593426-203593506 3 1.51e-05 aa agaaagaa agaaagaaag chr11:63339652-63339732 5 1.51e-05 agag agaaagaa cagagaaaga chrX:102407396-102407476 70 1.51e-05 aaagaaaaaa agaaagaa gga chr17:62091884-62091964 66 1.51e-05 gaaggaagga agaaagaa agaaagg chr7:139684580-139684660 7 1.51e-05 aaagaa agaaagaa agggaagggg chr12:32182438-32182518 55 1.51e-05 agcaaaagaa agaaagaa gaaaggaaga chr2:97148145-97148225 42 1.51e-05 atgaaagaga agaaagaa agaagaaaaa chr14:75953088-75953168 72 1.51e-05 taggaaggag agaaagaa a chr19:1203703-1203783 21 3.41e-05 AAGTGAAGCA GGAAAGAA GGGCTCAAAG chr2:111482447-111482527 39 3.41e-05 agggagggaa ggaaagaa ggaaagaggg chr1:231181685-231181765 33 3.41e-05 aaagaaagag ggaaagaa agagagaaga chr6:27124796-27124876 39 3.41e-05 aaagaaggaa ggaaagaa gaaaagaaaa chr7:44587138-44587218 36 3.41e-05 aaggaaggaa ggaaagaa ggaaggaagg chr6:27468014-27468094 27 3.41e-05 aaggaaggaa ggaaagaa aggaagaaaa chr6:150630110-150630190 33 3.41e-05 gaaagaggaa ggaaagaa agcgggagag chr3:142902583-142902663 50 7.21e-05 agagagggag agagagaa acagataaag chr11:85946020-85946100 12 7.21e-05 gaaggaagga agagagaa tggagaaagg chr7:104873442-104873522 39 7.21e-05 ggaaaagaga agagagaa gagagggaga chr4:140085147-140085227 58 7.21e-05 GGCAGGGGTG AGAGAGAA AGAGTGGGGG chr6:28771326-28771406 11 1.20e-04 aaggaagggg ggaaggaa gggagaaagg chr20:46061768-46061848 44 1.20e-04 gagagagtga ggaaggaa gggaagaagg chr8:74252531-74252611 26 1.20e-04 gagaagacaa ggaaggaa ggaaggagag chr5:180618399-180618479 1 1.20e-04 . GGAGAGAA GCGGAAAGAC chr15:51057438-51057518 53 1.20e-04 agaggagggt ggaaggaa agagatgagt chr1:201893613-201893693 15 1.20e-04 agggagggag ggaaggaa gcaaggaagg chr19:48828622-48828702 49 1.20e-04 agggcaggag ggagagaa gagacgcaga chr15:90732361-90732441 1 1.20e-04 . ggaaggaa aaggaggaag chr19:17578674-17578754 21 1.20e-04 gcagggagga ggagagaa aagggcagaa chr19:10539842-10539922 15 1.20e-04 aagaaatgaa ggaaggaa ggaaggaaaa chr3:138476419-138476499 26 1.20e-04 aaggaagaaa ggaaggaa gaagggaggg chr1:207178423-207178503 9 1.63e-04 GCCTCCAG GGAAAGAG AGGTGGGAAA chr7:148788020-148788100 52 2.16e-04 CGGGATCTGG GGAGGGAA GCGGTCAGAG chr1:25566316-25566396 70 2.16e-04 TACCGGAAGT GGAGGGAA GCG chr17:38279807-38279887 4 2.16e-04 GTT GGAGGGAA GGGTTAAAGG chr10:70849596-70849676 72 2.74e-04 agaaagagag agagagag a chr7:99765615-99765695 50 2.74e-04 agagaaacag agagagag agacagaggg chr22:27038587-27038667 45 2.74e-04 agacacaaag agagagag ggagacagtg chr21:40742354-40742434 56 2.74e-04 tgagagagcg agaaggag aaaagaatga chr11:5186180-5186260 71 2.74e-04 gttggggtgc agaaataa gg chr5:67621238-67621318 58 2.74e-04 gagaaagagg agaaggag gaagaggagg chr6:3229198-3229278 59 2.74e-04 TGTGTGTGTg agagagag agagaaagag chr1:35602522-35602602 28 3.47e-04 gttggggtgt ggaaataa gggattgggg chr7:123174933-123175013 21 3.47e-04 aggaaataag ggaaggag ctagaggcgg chr1:206674601-206674681 25 4.03e-04 gagaaaggag agagggag ggggagatga chr19:1826329-1826409 59 4.73e-04 GGAGTAGGga ggagggag gggaggagaa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAAAGAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:9323736-9323816 1.5e-05 36_[+3]_36 chr9:140398447-140398527 1.5e-05 45_[+3]_27 chr10:50420922-50421002 1.5e-05 2_[+3]_70 chr10:45848033-45848113 1.5e-05 5_[+3]_67 chr8:144486088-144486168 1.5e-05 34_[+3]_38 chr10:30900522-30900602 1.5e-05 22_[+3]_50 chr12:114225994-11422607 1.5e-05 12_[+3]_60 chr20:23136531-23136611 1.5e-05 [+3]_72 chr19:45090976-45091056 1.5e-05 20_[+3]_52 chr1:203593426-203593506 1.5e-05 2_[+3]_70 chr11:63339652-63339732 1.5e-05 4_[+3]_68 chrX:102407396-102407476 1.5e-05 69_[+3]_3 chr17:62091884-62091964 1.5e-05 65_[+3]_7 chr7:139684580-139684660 1.5e-05 6_[+3]_66 chr12:32182438-32182518 1.5e-05 54_[+3]_18 chr2:97148145-97148225 1.5e-05 41_[+3]_31 chr14:75953088-75953168 1.5e-05 71_[+3]_1 chr19:1203703-1203783 3.4e-05 20_[+3]_52 chr2:111482447-111482527 3.4e-05 38_[+3]_34 chr1:231181685-231181765 3.4e-05 32_[+3]_40 chr6:27124796-27124876 3.4e-05 38_[+3]_34 chr7:44587138-44587218 3.4e-05 35_[+3]_37 chr6:27468014-27468094 3.4e-05 26_[+3]_46 chr6:150630110-150630190 3.4e-05 32_[+3]_40 chr3:142902583-142902663 7.2e-05 49_[+3]_23 chr11:85946020-85946100 7.2e-05 11_[+3]_61 chr7:104873442-104873522 7.2e-05 38_[+3]_34 chr4:140085147-140085227 7.2e-05 57_[+3]_15 chr6:28771326-28771406 0.00012 10_[+3]_62 chr20:46061768-46061848 0.00012 43_[+3]_29 chr8:74252531-74252611 0.00012 25_[+3]_47 chr5:180618399-180618479 0.00012 [+3]_72 chr15:51057438-51057518 0.00012 52_[+3]_20 chr1:201893613-201893693 0.00012 14_[+3]_58 chr19:48828622-48828702 0.00012 48_[+3]_24 chr15:90732361-90732441 0.00012 [+3]_72 chr19:17578674-17578754 0.00012 20_[+3]_52 chr19:10539842-10539922 0.00012 14_[+3]_58 chr3:138476419-138476499 0.00012 25_[+3]_47 chr1:207178423-207178503 0.00016 8_[+3]_64 chr7:148788020-148788100 0.00022 51_[+3]_21 chr1:25566316-25566396 0.00022 69_[+3]_3 chr17:38279807-38279887 0.00022 3_[+3]_69 chr10:70849596-70849676 0.00027 71_[+3]_1 chr7:99765615-99765695 0.00027 49_[+3]_23 chr22:27038587-27038667 0.00027 44_[+3]_28 chr21:40742354-40742434 0.00027 55_[+3]_17 chr11:5186180-5186260 0.00027 70_[+3]_2 chr5:67621238-67621318 0.00027 57_[+3]_15 chr6:3229198-3229278 0.00027 58_[+3]_14 chr1:35602522-35602602 0.00035 27_[+3]_45 chr7:123174933-123175013 0.00035 20_[+3]_52 chr1:206674601-206674681 0.0004 24_[+3]_48 chr19:1826329-1826409 0.00047 58_[+3]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAAAGAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RGAAAGAA width=8 seqs=54 chr2:9323736-9323816 ( 37) AGAAAGAA 1 chr9:140398447-140398527 ( 46) AGAAAGAA 1 chr10:50420922-50421002 ( 3) AGAAAGAA 1 chr10:45848033-45848113 ( 6) AGAAAGAA 1 chr8:144486088-144486168 ( 35) AGAAAGAA 1 chr10:30900522-30900602 ( 23) AGAAAGAA 1 chr12:114225994-11422607 ( 13) AGAAAGAA 1 chr20:23136531-23136611 ( 1) AGAAAGAA 1 chr19:45090976-45091056 ( 21) AGAAAGAA 1 chr1:203593426-203593506 ( 3) AGAAAGAA 1 chr11:63339652-63339732 ( 5) AGAAAGAA 1 chrX:102407396-102407476 ( 70) AGAAAGAA 1 chr17:62091884-62091964 ( 66) AGAAAGAA 1 chr7:139684580-139684660 ( 7) AGAAAGAA 1 chr12:32182438-32182518 ( 55) AGAAAGAA 1 chr2:97148145-97148225 ( 42) AGAAAGAA 1 chr14:75953088-75953168 ( 72) AGAAAGAA 1 chr19:1203703-1203783 ( 21) GGAAAGAA 1 chr2:111482447-111482527 ( 39) GGAAAGAA 1 chr1:231181685-231181765 ( 33) GGAAAGAA 1 chr6:27124796-27124876 ( 39) GGAAAGAA 1 chr7:44587138-44587218 ( 36) GGAAAGAA 1 chr6:27468014-27468094 ( 27) GGAAAGAA 1 chr6:150630110-150630190 ( 33) GGAAAGAA 1 chr3:142902583-142902663 ( 50) AGAGAGAA 1 chr11:85946020-85946100 ( 12) AGAGAGAA 1 chr7:104873442-104873522 ( 39) AGAGAGAA 1 chr4:140085147-140085227 ( 58) AGAGAGAA 1 chr6:28771326-28771406 ( 11) GGAAGGAA 1 chr20:46061768-46061848 ( 44) GGAAGGAA 1 chr8:74252531-74252611 ( 26) GGAAGGAA 1 chr5:180618399-180618479 ( 1) GGAGAGAA 1 chr15:51057438-51057518 ( 53) GGAAGGAA 1 chr1:201893613-201893693 ( 15) GGAAGGAA 1 chr19:48828622-48828702 ( 49) GGAGAGAA 1 chr15:90732361-90732441 ( 1) GGAAGGAA 1 chr19:17578674-17578754 ( 21) GGAGAGAA 1 chr19:10539842-10539922 ( 15) GGAAGGAA 1 chr3:138476419-138476499 ( 26) GGAAGGAA 1 chr1:207178423-207178503 ( 9) GGAAAGAG 1 chr7:148788020-148788100 ( 52) GGAGGGAA 1 chr1:25566316-25566396 ( 70) GGAGGGAA 1 chr17:38279807-38279887 ( 4) GGAGGGAA 1 chr10:70849596-70849676 ( 72) AGAGAGAG 1 chr7:99765615-99765695 ( 50) AGAGAGAG 1 chr22:27038587-27038667 ( 45) AGAGAGAG 1 chr21:40742354-40742434 ( 56) AGAAGGAG 1 chr11:5186180-5186260 ( 71) AGAAATAA 1 chr5:67621238-67621318 ( 58) AGAAGGAG 1 chr6:3229198-3229278 ( 59) AGAGAGAG 1 chr1:35602522-35602602 ( 28) GGAAATAA 1 chr7:123174933-123175013 ( 21) GGAAGGAG 1 chr1:206674601-206674681 ( 25) AGAGGGAG 1 chr19:1826329-1826409 ( 59) GGAGGGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAAAGAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.59303 E= 2.6e-020 119 -1240 64 -1240 -1240 -1240 176 -1240 208 -1240 -1240 -1240 158 -1240 0 -1240 158 -1240 0 -1240 -1240 -1240 170 -246 208 -1240 -1240 -1240 179 -1240 -68 -1240 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAAAGAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 54 E= 2.6e-020 0.537037 0.000000 0.462963 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.703704 0.000000 0.296296 0.000000 0.703704 0.000000 0.296296 0.000000 0.000000 0.000000 0.962963 0.037037 1.000000 0.000000 0.000000 0.000000 0.814815 0.000000 0.185185 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAAAGAA MEME-3 regular expression -------------------------------------------------------------------------------- [AG]GA[AG][AG]GAA -------------------------------------------------------------------------------- Time 12.13 secs. ******************************************************************************** ******************************************************************************** MOTIF YYTCTYTC MEME-4 width = 8 sites = 42 llr = 350 E-value = 7.7e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif YYTCTYTC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 55:a252a probability G :::::1:: matrix T 55a:858: bits 2.3 * 2.1 * 1.8 ** * 1.6 ** ** Relative 1.4 *** ** Entropy 1.1 ***** ** (12.0 bits) 0.9 ***** ** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTTCTCTC consensus TC CT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYTCTYTC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr9:19174580-19174660 44 5.02e-06 ccttccttcc tttctttc tatccctttc chr1:100791989-100792069 2 5.02e-06 c tttctttc ttttcttttc chr1:65953656-65953736 68 5.02e-06 tctttgtttc tttctttc ctctt chr6:43872679-43872759 57 5.02e-06 tctctttctc tttctttc tttctttttc chr10:72337078-72337158 72 5.02e-06 ctttcttcct tttctttc t chr22:30615838-30615918 16 5.02e-06 ccttcctctc tttctttc cctctctctc chr1:175094718-175094798 56 1.80e-05 tctctcttct tttctctc tctccttcct chr1:93258130-93258210 48 1.80e-05 TTTttcattc cttctttc cttcttttct chr3:9941191-9941271 15 1.80e-05 ccctccctcc cttctttc ctcccttcct chr9:127591264-127591344 33 1.80e-05 tctttctttc tttctctc ttccttcctt chr15:90605442-90605522 9 1.80e-05 cctctccc tttctctc tctctctctc chr15:63804517-63804597 70 1.80e-05 ctttcttttt cttctttc ttc chr1:156833085-156833165 34 2.45e-05 cctgtcagtt tctctttc agtgtctctg chr7:24833820-24833900 72 2.45e-05 cttctctctc tctctttc c chr10:72430787-72430867 48 2.45e-05 tatctctctc tctctttc ctctctctct chr11:118482032-11848211 45 3.29e-05 tccttattct cttctctc ctctAATCAC chr19:2056553-2056633 51 3.29e-05 ccctcgtccc cttctctc cttcctcctc chr1:223894939-223895019 8 4.98e-05 ctctctc tctctctc ttcttctctc chr17:38225381-38225461 8 4.98e-05 ctccctc tctctctc cccctccccc chr6:50995131-50995211 57 4.98e-05 tctctctctc tctctctc tctctgtgtg chr7:75496554-75496634 30 4.98e-05 tgtctgtctg tctctctc tctctctctc chr19:7571617-7571697 40 6.07e-05 ttccccagct cctctctc ctcccctggc chr12:56473847-56473927 27 6.07e-05 TTCctccctc cctctctc tctctctctc chr12:104994729-10499480 3 6.07e-05 tt cctctctc cttcttccct chr4:40196995-40197075 60 6.72e-05 ttctcttcct tttccttc ccttccctcc chr9:94909585-94909665 55 9.05e-05 gtccttcccc cttccttc cttTACTGAT chr21:36282144-36282224 73 9.05e-05 tccctccttg cttccttc chr3:195424769-195424849 42 1.06e-04 gtggatacac tttctgtc aactcctaaa chr8:106377168-106377248 52 1.06e-04 CCATTAAACT TTTCTGTC CTGGGCCCTA chr17:28728330-28728410 44 1.34e-04 tcctcttcct cttcttcc tcctcttcct chr15:66130070-66130150 47 1.34e-04 cacttcctca cttccctc actctcttaa chr1:113683792-113683872 1 1.74e-04 . cctccttc ccttctgcct chr1:31200757-31200837 59 1.74e-04 cctcccacca tctccctc tcTTCTCTAG chr21:48055924-48056004 21 1.94e-04 CCCACCACCA TCTCTGTC ACGCCCTTCG chr6:125623216-125623296 21 2.30e-04 tcctgctccc cctcttcc tcctcccctt chr22:21448096-21448176 13 2.42e-04 aagaggaagg cctctgtc tcttgcatat chr17:77784338-77784418 14 2.56e-04 CTTGGCCTGT CCTCTCCC GCTCCGCGCA chr12:132111987-13211206 72 2.56e-04 CAGCCACTCC CCTCTCCC C chrX:135992424-135992504 11 2.96e-04 tctcctttac cttcctcc tcactgctgc chr7:138145089-138145169 50 3.42e-04 CCTGAGGAGG CTTCCCCC GCCCGGTTTG chr17:55063239-55063319 17 4.41e-04 CCTTCTCACA CCTCCCCC TCATTCTTAT chr17:8067734-8067814 1 4.41e-04 . CCTCCCCC ACTGCAGTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYTCTYTC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:19174580-19174660 5e-06 43_[+4]_29 chr1:100791989-100792069 5e-06 1_[+4]_71 chr1:65953656-65953736 5e-06 67_[+4]_5 chr6:43872679-43872759 5e-06 56_[+4]_16 chr10:72337078-72337158 5e-06 71_[+4]_1 chr22:30615838-30615918 5e-06 15_[+4]_57 chr1:175094718-175094798 1.8e-05 55_[+4]_17 chr1:93258130-93258210 1.8e-05 47_[+4]_25 chr3:9941191-9941271 1.8e-05 14_[+4]_58 chr9:127591264-127591344 1.8e-05 32_[+4]_40 chr15:90605442-90605522 1.8e-05 8_[+4]_64 chr15:63804517-63804597 1.8e-05 69_[+4]_3 chr1:156833085-156833165 2.5e-05 33_[+4]_39 chr7:24833820-24833900 2.5e-05 71_[+4]_1 chr10:72430787-72430867 2.5e-05 47_[+4]_25 chr11:118482032-11848211 3.3e-05 44_[+4]_28 chr19:2056553-2056633 3.3e-05 50_[+4]_22 chr1:223894939-223895019 5e-05 7_[+4]_65 chr17:38225381-38225461 5e-05 7_[+4]_65 chr6:50995131-50995211 5e-05 56_[+4]_16 chr7:75496554-75496634 5e-05 29_[+4]_43 chr19:7571617-7571697 6.1e-05 39_[+4]_33 chr12:56473847-56473927 6.1e-05 26_[+4]_46 chr12:104994729-10499480 6.1e-05 2_[+4]_70 chr4:40196995-40197075 6.7e-05 59_[+4]_13 chr9:94909585-94909665 9e-05 54_[+4]_18 chr21:36282144-36282224 9e-05 72_[+4] chr3:195424769-195424849 0.00011 41_[+4]_31 chr8:106377168-106377248 0.00011 51_[+4]_21 chr17:28728330-28728410 0.00013 43_[+4]_29 chr15:66130070-66130150 0.00013 46_[+4]_26 chr1:113683792-113683872 0.00017 [+4]_72 chr1:31200757-31200837 0.00017 58_[+4]_14 chr21:48055924-48056004 0.00019 20_[+4]_52 chr6:125623216-125623296 0.00023 20_[+4]_52 chr22:21448096-21448176 0.00024 12_[+4]_60 chr17:77784338-77784418 0.00026 13_[+4]_59 chr12:132111987-13211206 0.00026 71_[+4]_1 chrX:135992424-135992504 0.0003 10_[+4]_62 chr7:138145089-138145169 0.00034 49_[+4]_23 chr17:55063239-55063319 0.00044 16_[+4]_56 chr17:8067734-8067814 0.00044 [+4]_72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYTCTYTC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YYTCTYTC width=8 seqs=42 chr9:19174580-19174660 ( 44) TTTCTTTC 1 chr1:100791989-100792069 ( 2) TTTCTTTC 1 chr1:65953656-65953736 ( 68) TTTCTTTC 1 chr6:43872679-43872759 ( 57) TTTCTTTC 1 chr10:72337078-72337158 ( 72) TTTCTTTC 1 chr22:30615838-30615918 ( 16) TTTCTTTC 1 chr1:175094718-175094798 ( 56) TTTCTCTC 1 chr1:93258130-93258210 ( 48) CTTCTTTC 1 chr3:9941191-9941271 ( 15) CTTCTTTC 1 chr9:127591264-127591344 ( 33) TTTCTCTC 1 chr15:90605442-90605522 ( 9) TTTCTCTC 1 chr15:63804517-63804597 ( 70) CTTCTTTC 1 chr1:156833085-156833165 ( 34) TCTCTTTC 1 chr7:24833820-24833900 ( 72) TCTCTTTC 1 chr10:72430787-72430867 ( 48) TCTCTTTC 1 chr11:118482032-11848211 ( 45) CTTCTCTC 1 chr19:2056553-2056633 ( 51) CTTCTCTC 1 chr1:223894939-223895019 ( 8) TCTCTCTC 1 chr17:38225381-38225461 ( 8) TCTCTCTC 1 chr6:50995131-50995211 ( 57) TCTCTCTC 1 chr7:75496554-75496634 ( 30) TCTCTCTC 1 chr19:7571617-7571697 ( 40) CCTCTCTC 1 chr12:56473847-56473927 ( 27) CCTCTCTC 1 chr12:104994729-10499480 ( 3) CCTCTCTC 1 chr4:40196995-40197075 ( 60) TTTCCTTC 1 chr9:94909585-94909665 ( 55) CTTCCTTC 1 chr21:36282144-36282224 ( 73) CTTCCTTC 1 chr3:195424769-195424849 ( 42) TTTCTGTC 1 chr8:106377168-106377248 ( 52) TTTCTGTC 1 chr17:28728330-28728410 ( 44) CTTCTTCC 1 chr15:66130070-66130150 ( 47) CTTCCCTC 1 chr1:113683792-113683872 ( 1) CCTCCTTC 1 chr1:31200757-31200837 ( 59) TCTCCCTC 1 chr21:48055924-48056004 ( 21) TCTCTGTC 1 chr6:125623216-125623296 ( 21) CCTCTTCC 1 chr22:21448096-21448176 ( 13) CCTCTGTC 1 chr17:77784338-77784418 ( 14) CCTCTCCC 1 chr12:132111987-13211206 ( 72) CCTCTCCC 1 chrX:135992424-135992504 ( 11) CTTCCTCC 1 chr7:138145089-138145169 ( 50) CTTCCCCC 1 chr17:55063239-55063319 ( 17) CCTCCCCC 1 chr17:8067734-8067814 ( 1) CCTCCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYTCTYTC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8329 E= 7.7e-009 -1204 92 -1204 129 -1204 78 -1204 142 -1204 -1204 -1204 229 -1204 192 -1204 -1204 -1204 -15 -1204 190 -1204 78 -164 115 -1204 -47 -1204 199 -1204 192 -1204 -1204 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYTCTYTC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 42 E= 7.7e-009 0.000000 0.500000 0.000000 0.500000 0.000000 0.452381 0.000000 0.547619 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.238095 0.000000 0.761905 0.000000 0.452381 0.095238 0.452381 0.000000 0.190476 0.000000 0.809524 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYTCTYTC MEME-4 regular expression -------------------------------------------------------------------------------- [CT][TC]TC[TC][CT]TC -------------------------------------------------------------------------------- Time 15.58 secs. ******************************************************************************** ******************************************************************************** MOTIF AAGGAAGG MEME-5 width = 8 sites = 45 llr = 378 E-value = 3.2e-013 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAGGAAGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A 8a:199:3 pos.-specific C :::::::: probability G 2:a911a7 matrix T :::::::: bits 2.3 2.1 1.8 ** * 1.6 ** * * Relative 1.4 ******* Entropy 1.1 ******* (12.1 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAGGAAGG consensus G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGGAAGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:28771326-28771406 25 2.38e-05 ggaagggaga aaggaagg aaggaaggag chr2:111482447-111482527 4 2.38e-05 ggg aaggaagg agggaaggga chr11:85946020-85946100 36 2.38e-05 aaggaagaga aaggaagg agggagggaa chr1:201893613-201893693 45 2.38e-05 ggaggaaggg aaggaagg aaggaaggaa chr8:144486088-144486168 70 2.38e-05 ggaaggaagg aaggaagg aag chr12:114225994-11422607 24 2.38e-05 gaaagaaagg aaggaagg ggaaagaaag chr15:90732361-90732441 43 2.38e-05 aagaaaaggg aaggaagg gagaggagag chr20:23136531-23136611 40 2.38e-05 gaaaggaagg aaggaagg aaGGTCTTAA chr19:45090976-45091056 32 2.38e-05 gaaagaaagg aaggaagg agggaaggaa chr1:203593426-203593506 32 2.38e-05 gggagggagg aaggaagg aaggtagagg chr11:63339652-63339732 57 2.38e-05 gggagggagg aaggaagg aaaagagaaa chr19:10539842-10539922 39 2.38e-05 aaaataagga aaggaagg agaaaaggaa chr17:62091884-62091964 17 2.38e-05 gagagagaga aaggaagg aaggaagaaa chr7:139684580-139684660 60 2.38e-05 aagaggaagg aaggaagg aaaagaaaga chr2:97148145-97148225 8 2.38e-05 aggagag aaggaagg gagggaaaga chr7:104873442-104873522 69 2.38e-05 gggagggagc aaggaagg aagg chr4:140085147-140085227 38 2.38e-05 agagaaagag aaggaagg gaGGCAGGGG chr7:44587138-44587218 26 2.38e-05 gaaaaaagga aaggaagg aaggaaagaa chr6:27468014-27468094 17 2.38e-05 aaggagagag aaggaagg aaggaaagaa chr6:150630110-150630190 12 2.38e-05 aagaggaagg aaggaagg aaagaaagag chr9:140398447-140398527 38 4.28e-05 aaggaggagg aaggaaga agaaagaaga chr8:74252531-74252611 68 4.28e-05 aaagaaaata aaggaaga gatga chr1:231181685-231181765 70 4.28e-05 ggaggaaggg aaggaAGA AAG chr10:30900522-30900602 62 4.28e-05 ggaaggaaga aaggaaga gaaagagaga chr12:32182438-32182518 17 4.28e-05 gaagacagga aaggaaga aaggaaaagg chr14:75953088-75953168 46 4.28e-05 aagaggaaag aaggaaga aagaaagata chr22:21448096-21448176 5 7.27e-05 ataa gaggaagg cctctgtctc chr17:78830428-78830508 8 7.27e-05 GTCATCG GAGGAAGG CTGGCGTGAC chr5:37672399-37672479 73 7.27e-05 gttgagataa gaggaagg chr10:45848033-45848113 49 1.45e-04 gaaagaaaga aagaaagg agagacagaa chr5:67621238-67621318 27 1.45e-04 gatgacagaa gaggaaga agaagaggag chr19:17578674-17578754 46 1.45e-04 gaaaggagag aaggaggg agaaagagag chr2:9323736-9323816 8 1.84e-04 gaaagaa aagaaaga gagagagaca chr6:27124796-27124876 2 1.84e-04 g aagaaaga gaatgagaga chr7:123174933-123175013 58 1.84e-04 cggggtctgg aaggagga tcgcggtagg chr20:46061768-46061848 58 2.14e-04 ggaagggaag aagggagg gagggaggaa chr3:138476419-138476499 35 2.14e-04 aggaaggaag aagggagg gagggagaga chr1:243265028-243265108 67 2.41e-04 TTGTGACGTC ACGGAAGG CGCGCC chr4:120375832-120375912 10 2.41e-04 TGTGACGTC ACGGAAGG CGCGCTCTTG chr3:142902583-142902663 65 2.65e-04 gaaacagata aagggaga cagacaga chr15:51057438-51057518 44 3.47e-04 gggtggaaaa gaggaggg tggaaggaaa chr6:32158085-32158165 31 3.47e-04 agacctagtg gaggaggg gagagggaag chr6:150591075-150591155 11 4.20e-04 TTGGAGGTGG GAGGAGGA TGATGTAGCA chr19:2841100-2841180 5 4.20e-04 CCCG GAGGAGGA CGCGGGCGGG chrX:102407396-102407476 57 4.20e-04 aagagaaaga gagaaaga aaaaaagaaa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGGAAGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:28771326-28771406 2.4e-05 24_[+5]_48 chr2:111482447-111482527 2.4e-05 3_[+5]_69 chr11:85946020-85946100 2.4e-05 35_[+5]_37 chr1:201893613-201893693 2.4e-05 44_[+5]_28 chr8:144486088-144486168 2.4e-05 69_[+5]_3 chr12:114225994-11422607 2.4e-05 23_[+5]_49 chr15:90732361-90732441 2.4e-05 42_[+5]_30 chr20:23136531-23136611 2.4e-05 39_[+5]_33 chr19:45090976-45091056 2.4e-05 31_[+5]_41 chr1:203593426-203593506 2.4e-05 31_[+5]_41 chr11:63339652-63339732 2.4e-05 56_[+5]_16 chr19:10539842-10539922 2.4e-05 38_[+5]_34 chr17:62091884-62091964 2.4e-05 16_[+5]_56 chr7:139684580-139684660 2.4e-05 59_[+5]_13 chr2:97148145-97148225 2.4e-05 7_[+5]_65 chr7:104873442-104873522 2.4e-05 68_[+5]_4 chr4:140085147-140085227 2.4e-05 37_[+5]_35 chr7:44587138-44587218 2.4e-05 25_[+5]_47 chr6:27468014-27468094 2.4e-05 16_[+5]_56 chr6:150630110-150630190 2.4e-05 11_[+5]_61 chr9:140398447-140398527 4.3e-05 37_[+5]_35 chr8:74252531-74252611 4.3e-05 67_[+5]_5 chr1:231181685-231181765 4.3e-05 69_[+5]_3 chr10:30900522-30900602 4.3e-05 61_[+5]_11 chr12:32182438-32182518 4.3e-05 16_[+5]_56 chr14:75953088-75953168 4.3e-05 45_[+5]_27 chr22:21448096-21448176 7.3e-05 4_[+5]_68 chr17:78830428-78830508 7.3e-05 7_[+5]_65 chr5:37672399-37672479 7.3e-05 72_[+5] chr10:45848033-45848113 0.00015 48_[+5]_24 chr5:67621238-67621318 0.00015 26_[+5]_46 chr19:17578674-17578754 0.00015 45_[+5]_27 chr2:9323736-9323816 0.00018 7_[+5]_65 chr6:27124796-27124876 0.00018 1_[+5]_71 chr7:123174933-123175013 0.00018 57_[+5]_15 chr20:46061768-46061848 0.00021 57_[+5]_15 chr3:138476419-138476499 0.00021 34_[+5]_38 chr1:243265028-243265108 0.00024 66_[+5]_6 chr4:120375832-120375912 0.00024 9_[+5]_63 chr3:142902583-142902663 0.00026 64_[+5]_8 chr15:51057438-51057518 0.00035 43_[+5]_29 chr6:32158085-32158165 0.00035 30_[+5]_42 chr6:150591075-150591155 0.00042 10_[+5]_62 chr19:2841100-2841180 0.00042 4_[+5]_68 chrX:102407396-102407476 0.00042 56_[+5]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGGAAGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAGGAAGG width=8 seqs=45 chr6:28771326-28771406 ( 25) AAGGAAGG 1 chr2:111482447-111482527 ( 4) AAGGAAGG 1 chr11:85946020-85946100 ( 36) AAGGAAGG 1 chr1:201893613-201893693 ( 45) AAGGAAGG 1 chr8:144486088-144486168 ( 70) AAGGAAGG 1 chr12:114225994-11422607 ( 24) AAGGAAGG 1 chr15:90732361-90732441 ( 43) AAGGAAGG 1 chr20:23136531-23136611 ( 40) AAGGAAGG 1 chr19:45090976-45091056 ( 32) AAGGAAGG 1 chr1:203593426-203593506 ( 32) AAGGAAGG 1 chr11:63339652-63339732 ( 57) AAGGAAGG 1 chr19:10539842-10539922 ( 39) AAGGAAGG 1 chr17:62091884-62091964 ( 17) AAGGAAGG 1 chr7:139684580-139684660 ( 60) AAGGAAGG 1 chr2:97148145-97148225 ( 8) AAGGAAGG 1 chr7:104873442-104873522 ( 69) AAGGAAGG 1 chr4:140085147-140085227 ( 38) AAGGAAGG 1 chr7:44587138-44587218 ( 26) AAGGAAGG 1 chr6:27468014-27468094 ( 17) AAGGAAGG 1 chr6:150630110-150630190 ( 12) AAGGAAGG 1 chr9:140398447-140398527 ( 38) AAGGAAGA 1 chr8:74252531-74252611 ( 68) AAGGAAGA 1 chr1:231181685-231181765 ( 70) AAGGAAGA 1 chr10:30900522-30900602 ( 62) AAGGAAGA 1 chr12:32182438-32182518 ( 17) AAGGAAGA 1 chr14:75953088-75953168 ( 46) AAGGAAGA 1 chr22:21448096-21448176 ( 5) GAGGAAGG 1 chr17:78830428-78830508 ( 8) GAGGAAGG 1 chr5:37672399-37672479 ( 73) GAGGAAGG 1 chr10:45848033-45848113 ( 49) AAGAAAGG 1 chr5:67621238-67621318 ( 27) GAGGAAGA 1 chr19:17578674-17578754 ( 46) AAGGAGGG 1 chr2:9323736-9323816 ( 8) AAGAAAGA 1 chr6:27124796-27124876 ( 2) AAGAAAGA 1 chr7:123174933-123175013 ( 58) AAGGAGGA 1 chr20:46061768-46061848 ( 58) AAGGGAGG 1 chr3:138476419-138476499 ( 35) AAGGGAGG 1 chr1:243265028-243265108 ( 67) ACGGAAGG 1 chr4:120375832-120375912 ( 10) ACGGAAGG 1 chr3:142902583-142902663 ( 65) AAGGGAGA 1 chr15:51057438-51057518 ( 44) GAGGAGGG 1 chr6:32158085-32158165 ( 31) GAGGAGGG 1 chr6:150591075-150591155 ( 11) GAGGAGGA 1 chr19:2841100-2841180 ( 5) GAGGAGGA 1 chrX:102407396-102407476 ( 57) GAGAAAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGGAAGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.70763 E= 3.2e-013 176 -1214 -57 -1214 202 -257 -1214 -1214 -1214 -1214 176 -1214 -141 -1214 162 -1214 198 -1214 -215 -1214 188 -1214 -115 -1214 -1214 -1214 176 -1214 40 -1214 122 -1214 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGGAAGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 45 E= 3.2e-013 0.800000 0.000000 0.200000 0.000000 0.955556 0.044444 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.088889 0.000000 0.911111 0.000000 0.933333 0.000000 0.066667 0.000000 0.866667 0.000000 0.133333 0.000000 0.000000 0.000000 1.000000 0.000000 0.311111 0.000000 0.688889 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAGGAAGG MEME-5 regular expression -------------------------------------------------------------------------------- [AG]AGGAAG[GA] -------------------------------------------------------------------------------- Time 18.93 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:2494623-2494703 9.98e-01 80 chr11:1439654-1439734 2.70e-01 80 chr12:132111987-13211206 8.24e-02 80 chr2:71681047-71681127 2.33e-01 80 chr12:54764020-54764100 3.75e-01 80 chr4:1408949-1409029 1.00e+00 80 chr12:49582518-49582598 4.55e-01 80 chr16:84964221-84964301 9.91e-01 80 chr7:123174933-123175013 2.07e-02 80 chr19:3477694-3477774 9.81e-01 80 chr21:38446107-38446187 4.20e-01 80 chr19:8428464-8428544 2.87e-02 12_[+4(1.80e-05)]_60 chr14:73714269-73714349 3.51e-01 80 chr17:19091383-19091463 2.89e-04 80 chrX:2438279-2438359 9.97e-01 80 chr1:54841508-54841588 3.91e-01 80 chr22:48047498-48047578 4.86e-01 80 chr14:75953088-75953168 2.78e-05 8_[+1(7.21e-05)]_8_[+1(1.51e-05)]_7_\ [+3(3.41e-05)]_3_[+1(1.51e-05)]_13_[+1(1.51e-05)]_1 chr7:73831955-73832035 9.88e-01 80 chr1:148556020-148556100 8.89e-01 80 chr7:128417948-128418028 3.02e-01 80 chr16:90098608-90098688 7.33e-01 80 chr3:5021297-5021377 4.73e-02 80 chr15:63804517-63804597 2.69e-03 10_[+2(1.49e-05)]_1_[+2(1.49e-05)]_\ 1_[+2(1.49e-05)]_6_[+4(1.80e-05)]_6_[+4(1.80e-05)]_5_[+4(1.80e-05)]_3 chr17:6918125-6918205 6.92e-01 80 chrX:1572483-1572563 3.16e-01 80 chr6:150630110-150630190 6.39e-05 7_[+5(2.38e-05)]_6_[+1(3.41e-05)]_3_\ [+3(3.41e-05)]_8_[+1(3.41e-05)]_12_[+3(3.41e-05)]_4 chr1:54411240-54411320 7.56e-01 80 chr6:3229198-3229278 2.26e-06 15_[+2(9.16e-05)]_45_[+1(3.41e-05)]_\ 4 chr3:138476419-138476499 2.42e-04 15_[+5(4.28e-05)]_[+5(2.38e-05)]_49 chr1:228674433-228674513 7.80e-03 17_[+5(2.38e-05)]_55 chr6:27468014-27468094 9.06e-05 2_[+5(2.38e-05)]_6_[+5(2.38e-05)]_2_\ [+3(3.41e-05)]_[+1(5.31e-05)]_28_[+3(3.41e-05)]_2 chr7:44587138-44587218 1.73e-05 25_[+5(2.38e-05)]_8_[+5(2.38e-05)]_\ 20_[+1(1.51e-05)]_3 chr19:56159814-56159894 5.07e-01 80 chr19:18529656-18529736 9.97e-01 80 chr17:80826857-80826937 9.98e-01 80 chr7:75496554-75496634 4.05e-03 30_[+2(2.33e-05)]_[+2(2.33e-05)]_\ [+2(2.33e-05)]_26 chr9:131940255-131940335 4.83e-01 80 chr7:101458637-101458717 1.36e-01 80 chr1:27670014-27670094 3.53e-01 80 chr20:34681053-34681133 7.16e-01 80 chr19:1826329-1826409 5.91e-03 72_[+1(7.21e-05)] chr4:140085147-140085227 1.15e-04 23_[+1(3.41e-05)]_6_[+5(2.38e-05)]_\ 16_[+1(3.41e-05)]_11 chr7:104873442-104873522 1.15e-04 19_[+3(3.41e-05)]_11_[+3(7.21e-05)]_\ 22_[+5(2.38e-05)]_4 chr22:30615838-30615918 5.59e-04 2_[+4(9.05e-05)]_5_[+4(5.02e-06)]_\ 10_[+4(5.02e-06)]_11_[+4(5.02e-06)]_[+4(6.72e-05)]_4_[+2(6.50e-06)] chr1:149514166-149514246 3.28e-01 80 chr7:2354455-2354535 8.40e-01 80 chr2:97148145-97148225 1.73e-05 7_[+5(2.38e-05)]_9_[+1(1.51e-05)]_9_\ [+1(1.51e-05)]_9_[+1(1.51e-05)]_2_[+1(1.51e-05)]_4 chr12:32182438-32182518 2.78e-05 3_[+5(4.28e-05)]_5_[+5(4.28e-05)]_\ 12_[+1(1.51e-05)]_6_[+1(1.51e-05)]_6_[+5(4.28e-05)]_8 chr1:194828975-194829055 1.31e-01 80 chr7:139684580-139684660 1.73e-05 2_[+1(1.51e-05)]_17_[+1(1.51e-05)]_\ 7_[+1(1.51e-05)]_5_[+5(2.38e-05)]_7_[+1(1.51e-05)]_2 chr2:189156399-189156479 6.73e-01 80 chr17:62091884-62091964 1.73e-05 1_[+1(3.41e-05)]_7_[+5(2.38e-05)]_5_\ [+1(1.51e-05)]_11_[+5(2.38e-05)]_[+5(2.38e-05)]_1_[+1(1.51e-05)]_7 chr10:82422459-82422539 9.75e-01 80 chr6:50995131-50995211 6.76e-03 37_[+2(2.33e-05)]_[+2(2.33e-05)]_\ [+2(2.33e-05)]_[+2(2.33e-05)]_11 chr19:10539842-10539922 1.73e-05 [+5(4.28e-05)]_4_[+5(2.38e-05)]_\ [+5(2.38e-05)]_10_[+5(2.38e-05)]_11_[+1(1.51e-05)]_15 chr11:93779633-93779713 1.78e-02 45_[+2(7.34e-05)]_27 chr22:25029639-25029719 9.87e-01 80 chrX:102407396-102407476 8.70e-05 32_[+1(1.51e-05)]_3_[+1(3.41e-05)]_\ 6_[+1(1.51e-05)]_4_[+1(1.51e-05)]_3 chr10:72337078-72337158 1.05e-03 13_[+4(5.02e-06)]_11_[+2(1.49e-05)]_\ 12_[+2(3.68e-05)]_3_[+2(7.34e-05)]_[+4(5.02e-06)]_1 chr19:17578674-17578754 4.68e-04 34_[+1(7.21e-05)]_11_[+1(3.41e-05)]_\ 19 chr3:171178159-171178239 3.23e-01 80 chr19:2841100-2841180 1.29e-01 80 chr1:246345583-246345663 1.59e-02 64_[+2(1.49e-05)]_8 chr15:41222801-41222881 1.51e-01 80 chr15:90605442-90605522 3.61e-03 1_[+2(5.61e-05)]_2_[+2(2.33e-05)]_\ [+2(2.33e-05)]_53 chr5:79107074-79107154 7.73e-01 80 chr19:45909150-45909230 7.00e-03 45_[+2(8.43e-05)]_27 chr19:49496899-49496979 8.17e-02 80 chr5:67621238-67621318 7.68e-04 27_[+1(5.31e-05)]_13_[+1(3.41e-05)]_\ 24 chr6:32158085-32158165 1.36e-02 80 chr2:47499554-47499634 3.75e-01 80 chr9:35111819-35111899 6.14e-01 80 chr6:43872679-43872759 5.59e-04 3_[+4(9.05e-05)]_[+4(9.05e-05)]_13_\ [+4(5.02e-06)]_7_[+2(6.50e-06)]_1_[+4(5.02e-06)]_6_[+4(5.02e-06)]_2 chr11:63339652-63339732 1.73e-05 4_[+1(1.51e-05)]_3_[+1(3.41e-05)]_2_\ [+1(1.51e-05)]_4_[+1(3.41e-05)]_11_[+5(2.38e-05)]_5_[+1(1.51e-05)]_3 chr8:17925169-17925249 5.34e-04 53_[+4(6.72e-05)]_19 chr8:126525383-126525463 4.21e-02 80 chr1:43284799-43284879 1.98e-02 80 chr19:10531732-10531812 1.55e-01 80 chr9:123964359-123964439 9.89e-01 80 chr1:7765177-7765257 5.05e-01 80 chr17:8067734-8067814 1.07e-01 80 chr6:44042322-44042402 9.98e-01 80 chr1:203593426-203593506 1.73e-05 2_[+1(1.51e-05)]_[+1(1.51e-05)]_13_\ [+5(2.38e-05)]_15_[+5(2.38e-05)]_18 chr12:28343778-28343858 9.30e-01 80 chr7:158768436-158768516 3.45e-01 80 chr21:36282144-36282224 1.04e-02 35_[+2(3.68e-05)]_29_[+4(9.05e-05)] chr8:67560692-67560772 9.62e-01 80 chr11:118436708-11843678 2.30e-03 20_[+1(5.31e-05)]_52 chr19:45090976-45091056 1.73e-05 8_[+1(1.51e-05)]_[+1(1.51e-05)]_3_\ [+5(2.38e-05)]_8_[+5(2.38e-05)]_6_[+1(1.51e-05)]_[+1(1.51e-05)]_7 chr19:34286532-34286612 9.56e-03 60_[+5(7.27e-05)]_12 chr17:38279807-38279887 5.50e-02 80 chr1:31200757-31200837 2.68e-02 3_[+2(5.61e-05)]_16_[+2(5.61e-05)]_\ 45 chr19:12893301-12893381 3.10e-01 80 chr20:32297836-32297916 3.43e-01 80 chr20:23136531-23136611 8.25e-06 [+1(1.51e-05)]_[+1(1.51e-05)]_6_\ [+1(3.41e-05)]_1_[+5(2.38e-05)]_[+5(2.38e-05)]_33 chr10:52381980-52382060 7.75e-02 80 chr8:106377168-106377248 8.46e-03 19_[+2(1.49e-05)]_53 chr15:90732361-90732441 2.42e-04 29_[+1(5.31e-05)]_5_[+5(2.38e-05)]_\ 15_[+5(2.38e-05)]_7 chr1:65953656-65953736 5.59e-04 8_[+4(5.02e-06)]_3_[+4(5.02e-06)]_5_\ [+4(9.05e-05)]_11_[+4(5.02e-06)]_4_[+4(5.02e-06)]_9 chr17:48891117-48891197 6.28e-01 80 chr6:119670785-119670865 2.31e-01 [+2(3.68e-05)]_72 chr21:48055924-48056004 1.45e-01 80 chr19:35626527-35626607 8.37e-01 80 chr1:183604954-183605034 6.04e-03 5_[+2(7.34e-05)]_67 chr1:206674601-206674681 4.89e-03 15_[+1(7.21e-05)]_57 chr19:2056553-2056633 1.39e-02 24_[+2(8.43e-05)]_18_[+4(3.29e-05)]_\ 22 chr12:114225994-11422607 1.73e-05 2_[+1(1.51e-05)]_2_[+1(1.51e-05)]_3_\ [+5(2.38e-05)]_4_[+1(1.51e-05)]_4_[+1(1.51e-05)]_3_[+1(3.41e-05)]_14 chr1:100791989-100792069 1.46e-03 1_[+4(5.02e-06)]_16_[+4(5.02e-06)]_\ [+4(5.02e-06)]_4_[+4(2.45e-05)]_[+4(9.05e-05)]_4_[+4(5.02e-06)]_7 chr12:46777305-46777385 3.70e-01 80 chr1:148604897-148604977 6.12e-01 80 chr3:72371585-72371665 9.75e-02 80 chr12:51714978-51715058 4.90e-01 80 chr10:30900522-30900602 2.78e-05 [+1(1.51e-05)]_[+1(1.51e-05)]_6_\ [+1(1.51e-05)]_[+3(7.21e-05)]_15_[+5(4.28e-05)]_7_[+1(3.41e-05)]_4 chr8:144486088-144486168 1.73e-05 8_[+3(7.21e-05)]_[+1(1.51e-05)]_2_\ [+1(1.51e-05)]_[+1(1.51e-05)]_2_[+3(7.21e-05)]_5_[+5(2.38e-05)]_\ [+5(2.38e-05)]_7 chr7:142654365-142654445 2.03e-03 43_[+3(7.21e-05)]_29 chr16:90098811-90098891 8.69e-01 80 chr9:100174163-100174243 3.49e-01 80 chr6:36648319-36648399 5.09e-01 80 chr6:119215186-119215266 1.05e-01 80 chr19:13049046-13049126 3.50e-01 80 chr1:113683792-113683872 3.19e-02 48_[+2(7.34e-05)]_24 chr19:2945311-2945391 4.30e-03 31_[+5(7.27e-05)]_41 chr19:48828622-48828702 2.77e-03 14_[+3(7.21e-05)]_58 chr11:118482032-11848211 1.05e-02 2_[+4(6.07e-05)]_5_[+2(5.61e-05)]_\ 21_[+4(3.29e-05)]_28 chr1:33220059-33220139 9.27e-01 80 chr7:945277-945357 9.69e-03 14_[+1(7.21e-05)]_19_[+1(7.21e-05)]_\ 6_[+1(7.21e-05)]_6_[+1(7.21e-05)]_3 chr9:127591264-127591344 5.59e-04 13_[+4(9.05e-05)]_[+2(6.50e-06)]_\ [+2(3.68e-05)]_[+2(1.49e-05)]_6_[+2(2.33e-05)]_3_[+4(9.05e-05)]_10 chr11:5186180-5186260 3.46e-02 80 chr5:154062179-154062259 6.28e-03 80 chr17:38225381-38225461 5.71e-03 4_[+2(2.33e-05)]_20_[+2(5.61e-05)]_\ 1_[+4(3.29e-05)]_5_[+2(2.33e-05)]_18 chr19:55813452-55813532 4.52e-01 80 chr7:100303152-100303232 5.74e-01 80 chr17:40828023-40828103 3.91e-01 80 chr9:131182542-131182622 3.13e-01 80 chr6:150591075-150591155 1.79e-01 80 chr1:25566316-25566396 3.61e-02 80 chr18:53257173-53257253 9.61e-01 80 chr22:20004633-20004713 5.01e-02 80 chr17:79372867-79372947 4.45e-03 80 chr3:195424769-195424849 7.12e-03 4_[+2(1.49e-05)]_68 chr17:65560086-65560166 8.38e-02 80 chr12:104994729-10499480 2.09e-02 2_[+4(6.07e-05)]_11_[+2(8.43e-05)]_\ 21_[+4(6.72e-05)]_22 chr17:47319283-47319363 3.83e-01 80 chr11:75063006-75063086 1.00e+00 80 chr10:72430787-72430867 1.46e-03 2_[+4(1.80e-05)]_5_[+2(6.50e-06)]_\ [+2(2.33e-05)]_9_[+2(2.33e-05)]_7_[+2(2.33e-05)]_[+2(2.33e-05)]_9 chr9:19174580-19174660 1.05e-03 4_[+4(9.05e-05)]_10_[+4(4.98e-05)]_\ [+4(9.05e-05)]_5_[+4(5.02e-06)]_3_[+2(5.61e-05)]_[+2(1.49e-05)]_10 chr6:27124796-27124876 1.73e-05 2_[+1(3.41e-05)]_12_[+1(1.51e-05)]_\ [+3(7.21e-05)]_[+3(3.41e-05)]_9_[+1(3.41e-05)]_17 chr17:56441778-56441858 4.85e-03 20_[+1(3.41e-05)]_52 chr3:12526190-12526270 6.16e-01 80 chr1:178994782-178994862 8.96e-01 80 chr5:37672399-37672479 1.76e-02 72_[+5(7.27e-05)] chr1:9294516-9294596 3.58e-01 80 chr1:32403236-32403316 4.41e-01 80 chr3:9941191-9941271 6.92e-03 14_[+4(1.80e-05)]_2_[+2(8.43e-05)]_\ 17_[+4(3.29e-05)]_9_[+4(9.05e-05)]_6 chr4:38663853-38663933 2.44e-02 32_[+2(7.34e-05)]_40 chr21:40742354-40742434 1.69e-04 37_[+1(1.51e-05)]_35 chrX:70366015-70366095 4.50e-01 80 chr8:26240361-26240441 7.29e-01 80 chr7:138145089-138145169 1.98e-02 68_[+4(9.05e-05)]_4 chr1:201893613-201893693 7.10e-04 24_[+5(2.38e-05)]_3_[+5(7.27e-05)]_\ 1_[+5(2.38e-05)]_[+5(2.38e-05)]_4_[+5(2.38e-05)]_8 chr2:220436866-220436946 6.99e-02 80 chr15:51057438-51057518 1.11e-02 80 chr12:56473847-56473927 7.62e-03 27_[+2(2.33e-05)]_[+2(2.33e-05)]_37 chr17:78830428-78830508 1.60e-01 7_[+5(7.27e-05)]_65 chr20:61062735-61062815 3.10e-01 80 chr15:66130070-66130150 8.11e-06 23_[+2(2.33e-05)]_49 chr16:84681827-84681907 7.71e-01 80 chr4:78783101-78783181 7.61e-02 80 chr17:77784338-77784418 1.21e-01 80 chr9:4852563-4852643 1.98e-01 80 chr7:155082918-155082998 8.66e-01 80 chr1:167838938-167839018 8.63e-01 80 chr4:120375832-120375912 2.76e-01 80 chr21:46493679-46493759 9.99e-01 80 chr7:148788020-148788100 1.87e-01 80 chr19:4343252-4343332 5.17e-01 80 chr16:1523107-1523187 8.57e-01 80 chr1:167832581-167832661 8.99e-01 80 chr7:76009502-76009582 1.12e-01 80 chr10:45848033-45848113 7.37e-05 1_[+1(1.51e-05)]_6_[+1(1.51e-05)]_\ [+3(7.21e-05)]_2_[+1(1.51e-05)]_[+1(1.51e-05)]_[+1(7.21e-05)]_13_\ [+3(3.41e-05)]_2 chr15:70391989-70392069 1.57e-01 80 chr17:28728330-28728410 1.11e-02 17_[+2(1.49e-05)]_1_[+2(7.34e-05)]_\ 1_[+2(1.49e-05)]_1_[+2(7.34e-05)]_1_[+2(1.49e-05)]_1_[+2(7.34e-05)]_1_\ [+2(1.49e-05)]_1 chr20:51797627-51797707 2.54e-01 80 chr1:231181685-231181765 2.78e-05 [+1(3.41e-05)]_4_[+1(1.51e-05)]_\ [+1(1.51e-05)]_8_[+1(3.41e-05)]_16_[+5(7.27e-05)]_1_[+5(4.28e-05)]_3 chr6:43422577-43422657 3.60e-01 80 chr3:156392114-156392194 1.88e-03 48_[+1(7.21e-05)]_24 chr11:85946020-85946100 1.73e-05 2_[+5(2.38e-05)]_1_[+3(7.21e-05)]_3_\ [+1(7.21e-05)]_5_[+5(2.38e-05)]_16_[+1(1.51e-05)]_2_[+1(7.21e-05)]_3 chr2:68694780-68694860 2.09e-01 80 chr2:111482447-111482527 9.06e-05 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[+5(2.38e-05)]_[+5(2.38e-05)]_[+1(3.41e-05)]_1_[+5(7.27e-05)]_1_\ [+5(2.38e-05)]_14 chr12:31478888-31478968 6.62e-01 80 chr10:50420922-50421002 2.22e-05 2_[+1(1.51e-05)]_[+1(1.51e-05)]_62 chr11:73088258-73088338 6.98e-01 80 chr1:243265028-243265108 1.83e-01 80 chr4:40196995-40197075 6.87e-03 2_[+4(9.05e-05)]_[+4(9.05e-05)]_\ [+4(9.05e-05)]_[+4(9.05e-05)]_[+4(9.05e-05)]_9_[+2(1.49e-05)]_\ [+4(6.72e-05)]_13 chr7:99765615-99765695 1.59e-02 80 chr17:38692818-38692898 1.27e-01 80 chr10:74856762-74856842 6.02e-01 80 chr19:17561431-17561511 5.68e-02 80 chr4:15155410-15155490 2.04e-03 28_[+4(5.02e-06)]_28_[+2(7.34e-05)]_\ 8 chr10:73648789-73648869 9.13e-01 80 chr10:70849596-70849676 2.05e-05 53_[+1(1.51e-05)]_[+1(3.41e-05)]_11 chr8:145673869-145673949 6.78e-01 80 chr1:145209066-145209146 8.10e-02 80 chr9:134249104-134249184 2.33e-01 80 chr19:38715095-38715175 9.20e-01 80 chr12:132970789-13297086 9.85e-01 80 chr19:6516320-6516400 3.52e-01 80 chr2:202652334-202652414 9.65e-02 80 chr22:21448096-21448176 3.22e-03 4_[+5(7.27e-05)]_68 chr9:94909585-94909665 1.26e-02 27_[+4(9.05e-05)]_[+4(3.29e-05)]_9_\ [+2(8.43e-05)]_20 chr7:50423605-50423685 4.76e-02 80 chr6:44102228-44102308 6.34e-02 80 chr20:49094994-49095074 9.99e-01 80 chr12:7052991-7053071 7.49e-01 80 chr1:207178423-207178503 4.07e-03 63_[+1(7.21e-05)]_9 chr9:140398447-140398527 2.78e-05 5_[+1(1.51e-05)]_1_[+5(4.28e-05)]_\ 15_[+5(4.28e-05)]_[+1(1.51e-05)]_1_[+5(4.28e-05)]_3_[+1(1.51e-05)]_7 chr2:9323736-9323816 8.88e-05 8_[+1(3.41e-05)]_12_[+1(1.51e-05)]_\ [+1(1.51e-05)]_1_[+1(3.41e-05)]_16_[+1(1.51e-05)]_3 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n09.farnam.hpc.yale.internal ********************************************************************************