******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/MLLT1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr19:5988987-5989067 1.0000 80 chr19:29028955-29029035 1.0000 80 chr17:21515561-21515641 1.0000 80 chr19:29023826-29023906 1.0000 80 chr6:68594467-68594547 1.0000 80 chr6:68592789-68592869 1.0000 80 chr5:119849076-119849156 1.0000 80 chr11:85777819-85777899 1.0000 80 chr19:29028144-29028224 1.0000 80 chr6:147528614-147528694 1.0000 80 chr17:57916454-57916534 1.0000 80 chr7:12442988-12443068 1.0000 80 chr4:139161616-139161696 1.0000 80 chr19:29031430-29031510 1.0000 80 chr11:85779327-85779407 1.0000 80 chr6:147527139-147527219 1.0000 80 chr6:37139733-37139813 1.0000 80 chr4:40209419-40209499 1.0000 80 chr6:27776423-27776503 1.0000 80 chr18:9916478-9916558 1.0000 80 chr7:16304991-16305071 1.0000 80 chr6:68750861-68750941 1.0000 80 chr17:18529047-18529127 1.0000 80 chr19:29098205-29098285 1.0000 80 chr10:3826708-3826788 1.0000 80 chr17:57918505-57918585 1.0000 80 chr6:68596381-68596461 1.0000 80 chr21:16124082-16124162 1.0000 80 chr17:57915777-57915857 1.0000 80 chr19:29024863-29024943 1.0000 80 chr6:27099447-27099527 1.0000 80 chr19:29026533-29026613 1.0000 80 chr1:194829078-194829158 1.0000 80 chr18:9917347-9917427 1.0000 80 chr6:27803956-27804036 1.0000 80 chr17:46620420-46620500 1.0000 80 chr21:15916414-15916494 1.0000 80 chr6:26031023-26031103 1.0000 80 chr17:32527093-32527173 1.0000 80 chr7:120630846-120630926 1.0000 80 chr7:120632475-120632555 1.0000 80 chrX:154030498-154030578 1.0000 80 chr10:5489696-5489776 1.0000 80 chr11:65192874-65192954 1.0000 80 chr22:37252556-37252636 1.0000 80 chr17:40427491-40427571 1.0000 80 chr18:3449169-3449249 1.0000 80 chr6:68754313-68754393 1.0000 80 chr17:48157167-48157247 1.0000 80 chr6:68595189-68595269 1.0000 80 chr6:147207347-147207427 1.0000 80 chr11:65192051-65192131 1.0000 80 chr2:30934623-30934703 1.0000 80 chr10:74035364-74035444 1.0000 80 chr6:16266935-16267015 1.0000 80 chr6:30783109-30783189 1.0000 80 chr17:36648426-36648506 1.0000 80 chr15:40567015-40567095 1.0000 80 chr1:145438935-145439015 1.0000 80 chr1:150952088-150952168 1.0000 80 chr11:65269150-65269230 1.0000 80 chr2:114361756-114361836 1.0000 80 chr11:59314544-59314624 1.0000 80 chr17:20772800-20772880 1.0000 80 chr7:16303139-16303219 1.0000 80 chr15:67196096-67196176 1.0000 80 chr20:45982496-45982576 1.0000 80 chr2:27906535-27906615 1.0000 80 chr6:27103187-27103267 1.0000 80 chr3:187463827-187463907 1.0000 80 chr11:5275363-5275443 1.0000 80 chr1:227505313-227505393 1.0000 80 chr14:21560785-21560865 1.0000 80 chr4:40199842-40199922 1.0000 80 chr11:19092862-19092942 1.0000 80 chr2:219712532-219712612 1.0000 80 chr7:12731259-12731339 1.0000 80 chr18:8915026-8915106 1.0000 80 chr6:27114425-27114505 1.0000 80 chr7:120718062-120718142 1.0000 80 chr6:147525565-147525645 1.0000 80 chr1:78470636-78470716 1.0000 80 chr2:158115282-158115362 1.0000 80 chr8:91234012-91234092 1.0000 80 chr11:65990302-65990382 1.0000 80 chr6:37142792-37142872 1.0000 80 chr1:201482240-201482320 1.0000 80 chr5:179095568-179095648 1.0000 80 chr6:26126215-26126295 1.0000 80 chr6:27111955-27112035 1.0000 80 chr5:90677136-90677216 1.0000 80 chr3:46120456-46120536 1.0000 80 chr6:68753016-68753096 1.0000 80 chr6:26201344-26201424 1.0000 80 chr17:72350347-72350427 1.0000 80 chr17:20772051-20772131 1.0000 80 chr4:10020528-10020608 1.0000 80 chr12:131713619-13171369 1.0000 80 chr4:79550295-79550375 1.0000 80 chr5:90678471-90678551 1.0000 80 chr4:142253520-142253600 1.0000 80 chr19:29034135-29034215 1.0000 80 chr7:142912306-142912386 1.0000 80 chr6:27113214-27113294 1.0000 80 chr3:5021309-5021389 1.0000 80 chr1:8035450-8035530 1.0000 80 chr7:120717278-120717358 1.0000 80 chr6:36854805-36854885 1.0000 80 chr6:27859875-27859955 1.0000 80 chr1:159130940-159131020 1.0000 80 chr2:108363199-108363279 1.0000 80 chr11:65267334-65267414 1.0000 80 chr21:15915109-15915189 1.0000 80 chr7:120628785-120628865 1.0000 80 chr17:57915559-57915639 1.0000 80 chr15:22461192-22461272 1.0000 80 chr6:26199901-26199981 1.0000 80 chr17:46702957-46703037 1.0000 80 chr15:93426982-93427062 1.0000 80 chr12:54691937-54692017 1.0000 80 chr19:42612798-42612878 1.0000 80 chr6:27861398-27861478 1.0000 80 chr14:102176379-10217645 1.0000 80 chr1:9785208-9785288 1.0000 80 chr5:94983742-94983822 1.0000 80 chr20:32900615-32900695 1.0000 80 chr7:22745705-22745785 1.0000 80 chr7:120633723-120633803 1.0000 80 chr7:22744517-22744597 1.0000 80 chr11:85778394-85778474 1.0000 80 chr17:48758778-48758858 1.0000 80 chr11:65193775-65193855 1.0000 80 chr6:68598094-68598174 1.0000 80 chr2:243153809-243153889 1.0000 80 chr6:26159778-26159858 1.0000 80 chr17:37778355-37778435 1.0000 80 chr19:42210829-42210909 1.0000 80 chrX:124288526-124288606 1.0000 80 chr3:195577882-195577962 1.0000 80 chr12:25099980-25100060 1.0000 80 chr8:145159260-145159340 1.0000 80 chr2:44706697-44706777 1.0000 80 chr9:130880052-130880132 1.0000 80 chr19:13265002-13265082 1.0000 80 chr6:43878342-43878422 1.0000 80 chr16:85589562-85589642 1.0000 80 chr19:34992556-34992636 1.0000 80 chr9:33722229-33722309 1.0000 80 chr8:22927604-22927684 1.0000 80 chr11:65189433-65189513 1.0000 80 chr16:15667893-15667973 1.0000 80 chr8:130582441-130582521 1.0000 80 chr1:28833411-28833491 1.0000 80 chr1:151254568-151254648 1.0000 80 chrX:152665695-152665775 1.0000 80 chr3:151922891-151922971 1.0000 80 chr1:65945562-65945642 1.0000 80 chr3:151990812-151990892 1.0000 80 chr6:27775462-27775542 1.0000 80 chr17:46621541-46621621 1.0000 80 chr17:39819066-39819146 1.0000 80 chr6:26029179-26029259 1.0000 80 chr14:70163471-70163551 1.0000 80 chrX:10087662-10087742 1.0000 80 chr17:40471206-40471286 1.0000 80 chr16:67850606-67850686 1.0000 80 chr19:41140555-41140635 1.0000 80 chr9:135897880-135897960 1.0000 80 chr3:85553382-85553462 1.0000 80 chr11:60897380-60897460 1.0000 80 chr20:45983746-45983826 1.0000 80 chr7:120634750-120634830 1.0000 80 chr11:65267130-65267210 1.0000 80 chr5:90675759-90675839 1.0000 80 chr20:362368-362448 1.0000 80 chr19:18390711-18390791 1.0000 80 chr15:93444742-93444822 1.0000 80 chr2:217642485-217642565 1.0000 80 chr1:145438736-145438816 1.0000 80 chr6:43596274-43596354 1.0000 80 chr17:79075651-79075731 1.0000 80 chr4:127656498-127656578 1.0000 80 chr5:90677833-90677913 1.0000 80 chr6:147205350-147205430 1.0000 80 chr9:138332623-138332703 1.0000 80 chr5:90676476-90676556 1.0000 80 chr7:120629871-120629951 1.0000 80 chr6:26202589-26202669 1.0000 80 chr7:22743505-22743585 1.0000 80 chr7:5569788-5569868 1.0000 80 chr7:120628156-120628236 1.0000 80 chr6:29720949-29721029 1.0000 80 chr17:78549275-78549355 1.0000 80 chr1:244436430-244436510 1.0000 80 chr5:95064957-95065037 1.0000 80 chr16:88905530-88905610 1.0000 80 chr19:29032135-29032215 1.0000 80 chr17:43212796-43212876 1.0000 80 chr11:65271889-65271969 1.0000 80 chr6:68593872-68593952 1.0000 80 chr15:77925953-77926033 1.0000 80 chr8:124195820-124195900 1.0000 80 chr6:26158535-26158615 1.0000 80 chr11:71511547-71511627 1.0000 80 chr12:54773574-54773654 1.0000 80 chr8:130585326-130585406 1.0000 80 chr1:51435524-51435604 1.0000 80 chr3:195870032-195870112 1.0000 80 chr16:15670543-15670623 1.0000 80 chr6:148712-148792 1.0000 80 chr10:3827255-3827335 1.0000 80 chr6:26203491-26203571 1.0000 80 chr4:74964463-74964543 1.0000 80 chr10:3828119-3828199 1.0000 80 chr4:10187310-10187390 1.0000 80 chr5:53609577-53609657 1.0000 80 chr19:36248881-36248961 1.0000 80 chrX:49047626-49047706 1.0000 80 chr8:2587864-2587944 1.0000 80 chr8:130586479-130586559 1.0000 80 chr10:65025188-65025268 1.0000 80 chr1:68153584-68153664 1.0000 80 chr10:5521473-5521553 1.0000 80 chr11:63953439-63953519 1.0000 80 chr7:120631701-120631781 1.0000 80 chr12:58299209-58299289 1.0000 80 chr1:149858003-149858083 1.0000 80 chr11:65270439-65270519 1.0000 80 chr6:7199823-7199903 1.0000 80 chr19:6424971-6425051 1.0000 80 chr6:30098932-30099012 1.0000 80 chr6:147213184-147213264 1.0000 80 chr2:145273283-145273363 1.0000 80 chr10:74036374-74036454 1.0000 80 chr10:94451887-94451967 1.0000 80 chr17:38574268-38574348 1.0000 80 chr6:147524443-147524523 1.0000 80 chr1:145443598-145443678 1.0000 80 chr19:816652-816732 1.0000 80 chr19:17607219-17607299 1.0000 80 chr5:95066464-95066544 1.0000 80 chr10:72432948-72433028 1.0000 80 chr11:59313906-59313986 1.0000 80 chr12:45342650-45342730 1.0000 80 chr11:65275239-65275319 1.0000 80 chr16:47496271-47496351 1.0000 80 chr7:25605654-25605734 1.0000 80 chr6:27804810-27804890 1.0000 80 chr7:100184144-100184224 1.0000 80 chr12:57632972-57633052 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_MLLT1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/MLLT1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.242 C 0.252 G 0.26 T 0.246 Background letter frequencies (from file dataset with add-one prior applied): A 0.242 C 0.252 G 0.26 T 0.246 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF KTTTCTTT MEME-1 width = 8 sites = 38 llr = 323 E-value = 2.9e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif KTTTCTTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::::2::: pos.-specific C 1:::6::2 probability G 3:::2:1: matrix T 6aaa:a98 bits 2.0 *** * 1.8 *** * 1.6 *** ** 1.4 *** ** Relative 1.2 *** *** Entropy 1.0 *** *** (12.3 bits) 0.8 *** *** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTTCTTT consensus G G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTTCTTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:145443598-145443678 11 1.37e-05 ATTGGTGTGA TTTTCttt ctttctttct chr8:124195820-124195900 73 1.37e-05 Ctttcttttt ttttcttt chr4:127656498-127656578 66 1.37e-05 TCATCCATCC TTTTCTTT ATTCTTA chr17:57915559-57915639 66 1.37e-05 AAATGTGTCT TTTTCTTT GGGCTAC chr7:120717278-120717358 20 1.37e-05 ATGTTCTTCT TTTTCTTT CCTGTATCCT chr5:90677136-90677216 28 1.37e-05 GAAAAATCTG TTTTCTTT CATCCGTTTC chr6:37142792-37142872 38 1.37e-05 GCTGCCCTAG TTTTCTTT CCTCCTTTCC chr6:37139733-37139813 32 1.37e-05 TGGCTTTTTT TTTTCTTT AGTGTTAAGG chr10:5521473-5521553 47 2.83e-05 CTATTCTTCT GTTTCTTT CTCCCCTCTC chr5:94983742-94983822 57 2.83e-05 TTCACTTCAT GTTTCTTT TATCTCCCGT chr6:7199823-7199903 73 4.24e-05 GATTTttttg ttttgttt chr19:13265002-13265082 8 4.24e-05 TTGTGTT TTTTGTTT TGTTTGTTTG chr7:120718062-120718142 49 4.24e-05 tttgttttgt ttttgttt ttgagatgga chr2:27906535-27906615 72 4.24e-05 TATGTAttct ttttgttt g chr17:57918505-57918585 43 4.24e-05 ttgtttttgt ttttgttt ttTTATCAAA chr1:51435524-51435604 61 6.97e-05 GGTGAATGCC TTTTCTTC CCCCTGAATG chr1:145438736-145438816 19 6.97e-05 GGAGCTTTTT TTTTCTTC CACCGTCATT chr19:18390711-18390791 27 6.97e-05 GAGAATTTTT TTTTCTTC TTCCCATTTC chr16:85589562-85589642 4 6.97e-05 TTT TTTTATTT GCATCTCAAG chr3:187463827-187463907 65 6.97e-05 TTTGCTTTAT TTTTATTT AGGACAGG chr10:5489696-5489776 11 6.97e-05 GGAAGTACAC TTTTATTT GGTGTGGTTT chr17:38574268-38574348 21 9.88e-05 GTTGGCCGGG GTTTGTTT GAATAAACCA chr5:53609577-53609657 21 9.88e-05 cattaaacct ctttcttt tctaaattgc chr9:138332623-138332703 4 9.88e-05 ctg ctttcttt ctgatcccag chrX:124288526-124288606 22 9.88e-05 cgtgtccaga gtttgttt cttctgatgt chr10:74035364-74035444 53 9.88e-05 TGTGTTTGTT GTTTGTTT TGTATCTTGT chr6:68750861-68750941 5 9.88e-05 gttt gtttgttt TATCATATTG chr6:147527139-147527219 71 9.88e-05 AGGCTGTATC CTTTCTTT AA chr3:151922891-151922971 64 1.28e-04 TTTTCACACT GTTTCTTC CCTAGAGTA chr2:108363199-108363279 13 1.28e-04 tgtgtttgga gtttcttc cttctggtgg chr1:78470636-78470716 71 1.28e-04 ACCCAGCTTG GTTTATTT TT chr11:5275363-5275443 34 1.28e-04 GTCCTCTGCA GTTTCTTC ACTCCCAACC chr6:30783109-30783189 15 1.28e-04 tgtgttcgga gtttcttc cttctggtgg chr10:72432948-72433028 35 1.57e-04 tttcaatgtc ttttctgt ctcCAACTTG chr15:93444742-93444822 64 1.57e-04 AATGTACAGT TTTTCTGT CAGTAAATT chr6:147528614-147528694 31 1.70e-04 TGTTAGATAT TTTTATTC CTGAACTCAG chr5:95066464-95066544 61 2.28e-04 TGAATGTTGC CTTTATTT TTTCTCACAA chr18:3449169-3449249 33 2.43e-04 TTAATGGCTA GTTTCTGT TTGAAATGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTTCTTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:145443598-145443678 1.4e-05 10_[+1]_62 chr8:124195820-124195900 1.4e-05 72_[+1] chr4:127656498-127656578 1.4e-05 65_[+1]_7 chr17:57915559-57915639 1.4e-05 65_[+1]_7 chr7:120717278-120717358 1.4e-05 19_[+1]_53 chr5:90677136-90677216 1.4e-05 27_[+1]_45 chr6:37142792-37142872 1.4e-05 37_[+1]_35 chr6:37139733-37139813 1.4e-05 31_[+1]_41 chr10:5521473-5521553 2.8e-05 46_[+1]_26 chr5:94983742-94983822 2.8e-05 56_[+1]_16 chr6:7199823-7199903 4.2e-05 72_[+1] chr19:13265002-13265082 4.2e-05 7_[+1]_65 chr7:120718062-120718142 4.2e-05 48_[+1]_24 chr2:27906535-27906615 4.2e-05 71_[+1]_1 chr17:57918505-57918585 4.2e-05 42_[+1]_30 chr1:51435524-51435604 7e-05 60_[+1]_12 chr1:145438736-145438816 7e-05 18_[+1]_54 chr19:18390711-18390791 7e-05 26_[+1]_46 chr16:85589562-85589642 7e-05 3_[+1]_69 chr3:187463827-187463907 7e-05 64_[+1]_8 chr10:5489696-5489776 7e-05 10_[+1]_62 chr17:38574268-38574348 9.9e-05 20_[+1]_52 chr5:53609577-53609657 9.9e-05 20_[+1]_52 chr9:138332623-138332703 9.9e-05 3_[+1]_69 chrX:124288526-124288606 9.9e-05 21_[+1]_51 chr10:74035364-74035444 9.9e-05 52_[+1]_20 chr6:68750861-68750941 9.9e-05 4_[+1]_68 chr6:147527139-147527219 9.9e-05 70_[+1]_2 chr3:151922891-151922971 0.00013 63_[+1]_9 chr2:108363199-108363279 0.00013 12_[+1]_60 chr1:78470636-78470716 0.00013 70_[+1]_2 chr11:5275363-5275443 0.00013 33_[+1]_39 chr6:30783109-30783189 0.00013 14_[+1]_58 chr10:72432948-72433028 0.00016 34_[+1]_38 chr15:93444742-93444822 0.00016 63_[+1]_9 chr6:147528614-147528694 0.00017 30_[+1]_42 chr5:95066464-95066544 0.00023 60_[+1]_12 chr18:3449169-3449249 0.00024 32_[+1]_40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTTCTTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KTTTCTTT width=8 seqs=38 chr1:145443598-145443678 ( 11) TTTTCTTT 1 chr8:124195820-124195900 ( 73) TTTTCTTT 1 chr4:127656498-127656578 ( 66) TTTTCTTT 1 chr17:57915559-57915639 ( 66) TTTTCTTT 1 chr7:120717278-120717358 ( 20) TTTTCTTT 1 chr5:90677136-90677216 ( 28) TTTTCTTT 1 chr6:37142792-37142872 ( 38) TTTTCTTT 1 chr6:37139733-37139813 ( 32) TTTTCTTT 1 chr10:5521473-5521553 ( 47) GTTTCTTT 1 chr5:94983742-94983822 ( 57) GTTTCTTT 1 chr6:7199823-7199903 ( 73) TTTTGTTT 1 chr19:13265002-13265082 ( 8) TTTTGTTT 1 chr7:120718062-120718142 ( 49) TTTTGTTT 1 chr2:27906535-27906615 ( 72) TTTTGTTT 1 chr17:57918505-57918585 ( 43) TTTTGTTT 1 chr1:51435524-51435604 ( 61) TTTTCTTC 1 chr1:145438736-145438816 ( 19) TTTTCTTC 1 chr19:18390711-18390791 ( 27) TTTTCTTC 1 chr16:85589562-85589642 ( 4) TTTTATTT 1 chr3:187463827-187463907 ( 65) TTTTATTT 1 chr10:5489696-5489776 ( 11) TTTTATTT 1 chr17:38574268-38574348 ( 21) GTTTGTTT 1 chr5:53609577-53609657 ( 21) CTTTCTTT 1 chr9:138332623-138332703 ( 4) CTTTCTTT 1 chrX:124288526-124288606 ( 22) GTTTGTTT 1 chr10:74035364-74035444 ( 53) GTTTGTTT 1 chr6:68750861-68750941 ( 5) GTTTGTTT 1 chr6:147527139-147527219 ( 71) CTTTCTTT 1 chr3:151922891-151922971 ( 64) GTTTCTTC 1 chr2:108363199-108363279 ( 13) GTTTCTTC 1 chr1:78470636-78470716 ( 71) GTTTATTT 1 chr11:5275363-5275443 ( 34) GTTTCTTC 1 chr6:30783109-30783189 ( 15) GTTTCTTC 1 chr10:72432948-72433028 ( 35) TTTTCTGT 1 chr15:93444742-93444822 ( 64) TTTTCTGT 1 chr6:147528614-147528694 ( 31) TTTTATTC 1 chr5:95066464-95066544 ( 61) CTTTATTT 1 chr18:3449169-3449249 ( 33) GTTTCTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTTCTTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.3471 E= 2.9e-008 -1189 -126 28 123 -1189 -1189 -1189 202 -1189 -1189 -1189 202 -1189 -1189 -1189 202 -61 127 -14 -1189 -1189 -1189 -1189 202 -1189 -1189 -172 190 -1189 -26 -1189 168 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTTCTTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 38 E= 2.9e-008 0.000000 0.105263 0.315789 0.578947 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.157895 0.605263 0.236842 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.078947 0.921053 0.000000 0.210526 0.000000 0.789474 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTTCTTT MEME-1 regular expression -------------------------------------------------------------------------------- [TG]TTT[CG]TT[TC] -------------------------------------------------------------------------------- Time 5.04 secs. ******************************************************************************** ******************************************************************************** MOTIF YGCCCYCT MEME-2 width = 8 sites = 29 llr = 265 E-value = 2.1e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif YGCCCYCT MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::3::: pos.-specific C 6:aa76a: probability G :a:::::: matrix T 4::::4:a bits 2.0 ** ** 1.8 *** ** 1.6 *** ** 1.4 *** ** Relative 1.2 **** ** Entropy 1.0 ******** (13.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGCCCCCT consensus T AT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCCCYCT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:57632972-57633052 32 1.64e-05 TGGGCTCGGG CGCCCCCT GGAGGCCGAG chr6:148712-148792 4 1.64e-05 gca cgccccct gttggcaacc chr17:78549275-78549355 49 1.64e-05 gtgcgaatgg cgccccct cgtgttgtgg chr11:60897380-60897460 47 1.64e-05 GAGGACCAGA CGCCCCCT CGTGGCATCC chr19:41140555-41140635 46 1.64e-05 AAGCCGGCTG CGCCCCCT AGTGGCCGAT chr17:39819066-39819146 3 1.64e-05 AG CGCCCCCT GCCGGTGGTC chr9:33722229-33722309 15 1.64e-05 CGGAACGCGG CGCCCCCT GGCGGCAGAA chr2:243153809-243153889 32 1.64e-05 tgctgtccag cgccccct gctggcgccg chr15:22461192-22461272 15 1.64e-05 GGTTCCTGAG CGCCCCCT GGTGGTTCTG chr2:114361756-114361836 19 1.64e-05 tgctgtccag cgccccct gctggcgccg chr15:40567015-40567095 29 1.64e-05 TTACTGTGGA CGCCCCCT GCTGGCAGGT chr22:37252556-37252636 42 1.64e-05 CTGATCGCGG CGCCCCCT GGCGGTCTGT chr9:130880052-130880132 50 4.84e-05 CGGGCTCTGG CGCCCTCT GGTGGCTGCG chr4:10020528-10020608 40 4.84e-05 AGGGCCGCAG CGCCCTCT GCCGGGCCTT chr5:179095568-179095648 7 4.84e-05 caccag tgccccct cacgtccaca chr2:219712532-219712612 70 4.84e-05 TAGGCTCTGG CGCCCTCT GCT chr15:67196096-67196176 20 4.84e-05 CCTGGTTAAT TGCCCCCT AGGCATCGTG chr1:150952088-150952168 60 4.84e-05 TGGCTGCTGA CGCCCTCT TGTGGCCATT chr7:25605654-25605734 3 7.97e-05 GG CGCCACCT AGTGTCCATT chr12:45342650-45342730 67 7.97e-05 TGCGGCAGGC TGCCCTCT GGAGGC chr6:30098932-30099012 56 7.97e-05 TGAAAGACAG CGCCACCT ACTGTCCATC chr12:54773574-54773654 49 7.97e-05 GTGCACCTGC TGCCCTCT GGCGGTTCAG chr2:27906535-27906615 29 7.97e-05 TAGGGTATAC TGCCCTCT GGTGGCAGAA chr3:46120456-46120536 16 1.10e-04 AGCACTCTGG TGCCACCT GGTGGTTAGA chr1:201482240-201482320 4 1.10e-04 GCT TGCCACCT GCTGGTGAAC chr9:135897880-135897960 58 1.25e-04 GACGCTCTGT TGCCATCT CATGGCCAAA chrX:10087662-10087742 33 1.25e-04 TGTATGGCAC TGCCATCT GGTGGCGGAT chr3:151990812-151990892 24 1.25e-04 CTCAGCTTGG TGCCATCT TGAGTCTGTC chr17:21515561-21515641 36 1.25e-04 atcttttcgc tgccatct ttttgcaacg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCCCYCT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:57632972-57633052 1.6e-05 31_[+2]_41 chr6:148712-148792 1.6e-05 3_[+2]_69 chr17:78549275-78549355 1.6e-05 48_[+2]_24 chr11:60897380-60897460 1.6e-05 46_[+2]_26 chr19:41140555-41140635 1.6e-05 45_[+2]_27 chr17:39819066-39819146 1.6e-05 2_[+2]_70 chr9:33722229-33722309 1.6e-05 14_[+2]_58 chr2:243153809-243153889 1.6e-05 31_[+2]_41 chr15:22461192-22461272 1.6e-05 14_[+2]_58 chr2:114361756-114361836 1.6e-05 18_[+2]_54 chr15:40567015-40567095 1.6e-05 28_[+2]_44 chr22:37252556-37252636 1.6e-05 41_[+2]_31 chr9:130880052-130880132 4.8e-05 49_[+2]_23 chr4:10020528-10020608 4.8e-05 39_[+2]_33 chr5:179095568-179095648 4.8e-05 6_[+2]_66 chr2:219712532-219712612 4.8e-05 69_[+2]_3 chr15:67196096-67196176 4.8e-05 19_[+2]_53 chr1:150952088-150952168 4.8e-05 59_[+2]_13 chr7:25605654-25605734 8e-05 2_[+2]_70 chr12:45342650-45342730 8e-05 66_[+2]_6 chr6:30098932-30099012 8e-05 55_[+2]_17 chr12:54773574-54773654 8e-05 48_[+2]_24 chr2:27906535-27906615 8e-05 28_[+2]_44 chr3:46120456-46120536 0.00011 15_[+2]_57 chr1:201482240-201482320 0.00011 3_[+2]_69 chr9:135897880-135897960 0.00013 57_[+2]_15 chrX:10087662-10087742 0.00013 32_[+2]_40 chr3:151990812-151990892 0.00013 23_[+2]_49 chr17:21515561-21515641 0.00013 35_[+2]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCCCYCT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YGCCCYCT width=8 seqs=29 chr12:57632972-57633052 ( 32) CGCCCCCT 1 chr6:148712-148792 ( 4) CGCCCCCT 1 chr17:78549275-78549355 ( 49) CGCCCCCT 1 chr11:60897380-60897460 ( 47) CGCCCCCT 1 chr19:41140555-41140635 ( 46) CGCCCCCT 1 chr17:39819066-39819146 ( 3) CGCCCCCT 1 chr9:33722229-33722309 ( 15) CGCCCCCT 1 chr2:243153809-243153889 ( 32) CGCCCCCT 1 chr15:22461192-22461272 ( 15) CGCCCCCT 1 chr2:114361756-114361836 ( 19) CGCCCCCT 1 chr15:40567015-40567095 ( 29) CGCCCCCT 1 chr22:37252556-37252636 ( 42) CGCCCCCT 1 chr9:130880052-130880132 ( 50) CGCCCTCT 1 chr4:10020528-10020608 ( 40) CGCCCTCT 1 chr5:179095568-179095648 ( 7) TGCCCCCT 1 chr2:219712532-219712612 ( 70) CGCCCTCT 1 chr15:67196096-67196176 ( 20) TGCCCCCT 1 chr1:150952088-150952168 ( 60) CGCCCTCT 1 chr7:25605654-25605734 ( 3) CGCCACCT 1 chr12:45342650-45342730 ( 67) TGCCCTCT 1 chr6:30098932-30099012 ( 56) CGCCACCT 1 chr12:54773574-54773654 ( 49) TGCCCTCT 1 chr2:27906535-27906615 ( 29) TGCCCTCT 1 chr3:46120456-46120536 ( 16) TGCCACCT 1 chr1:201482240-201482320 ( 4) TGCCACCT 1 chr9:135897880-135897960 ( 58) TGCCATCT 1 chrX:10087662-10087742 ( 33) TGCCATCT 1 chr3:151990812-151990892 ( 24) TGCCATCT 1 chr17:21515561-21515641 ( 36) TGCCATCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCCCYCT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.5458 E= 2.1e-007 -1150 130 -1150 62 -1150 -1150 194 -1150 -1150 199 -1150 -1150 -1150 199 -1150 -1150 19 152 -1150 -1150 -1150 130 -1150 62 -1150 199 -1150 -1150 -1150 -1150 -1150 202 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCCCYCT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 2.1e-007 0.000000 0.620690 0.000000 0.379310 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.275862 0.724138 0.000000 0.000000 0.000000 0.620690 0.000000 0.379310 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCCCYCT MEME-2 regular expression -------------------------------------------------------------------------------- [CT]GCC[CA][CT]CT -------------------------------------------------------------------------------- Time 8.85 secs. ******************************************************************************** ******************************************************************************** MOTIF AARSARAA MEME-3 width = 8 sites = 26 llr = 226 E-value = 1.8e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif AARSARAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A a77:a7aa pos.-specific C :::5:::: probability G ::35:3:: matrix T :3:::::: bits 2.0 * * ** 1.8 * * ** 1.6 * * ** 1.4 * * ** Relative 1.2 ** * ** Entropy 1.0 ******** (12.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAACAAAA consensus TGG G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AARSARAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:147524443-147524523 56 2.49e-05 AAATCCAATC AAACAAAA ACAACGCCCG chr8:130586479-130586559 40 2.49e-05 ctcatcttaa aaagaaaa aaaatgatca chr17:40471206-40471286 54 2.49e-05 tgtcaaaaca aaacaaaa acaaaaacaa chr1:65945562-65945642 26 2.49e-05 ACTAAaaaca aaacaaaa caagacaaaa chr6:26031023-26031103 43 2.49e-05 AGATCAACAG AAAGAAAA TGGTTAAAAC chr10:3826708-3826788 38 2.49e-05 Ccaagaaaca aaacaaaa acaaaatccg chr19:29028955-29029035 8 2.49e-05 aacaaat aaagaaaa agagagagaa chr2:145273283-145273363 32 7.84e-05 CCACCACAAC AAGCAAAA Gacacacaca chr8:2587864-2587944 29 7.84e-05 aaaggaggat aaagagaa agaatgggga chr11:65271889-65271969 67 7.84e-05 GTGATTGTTG AAGGAAAA AATCCA chr7:120633723-120633803 66 7.84e-05 aagggagagc aaacagaa gggagta chr1:227505313-227505393 33 7.84e-05 GGAAGAAGAA AAACAGAA AAGGGAGGAA chr21:16124082-16124162 31 7.84e-05 atgaaagggg aaggaaaa aagaggaaga chr7:16304991-16305071 2 7.84e-05 C AAGGAAAA GGACTGGTGC chr7:12442988-12443068 37 7.84e-05 AAACAACCAA AAACAGAA CCAAGGGTCG chr7:120631701-120631781 12 1.04e-04 GTGGGCTGTC ATAGAAAA TTCGATTTCA chr6:43878342-43878422 31 1.04e-04 ATGCACAAAT ATACAAAA ACCTACAGTG chr11:65267334-65267414 33 1.04e-04 agagtttcag atagaaaa tgaaaaacaa chr19:29024863-29024943 52 1.04e-04 tctactaaaa atacaaaa attagctggg chr4:40209419-40209499 10 1.04e-04 ctactaaaa atacaaaa attagccagg chr11:65270439-65270519 8 1.32e-04 TTTACAA AAGCAGAA TAAAAGCGAA chr5:90678471-90678551 14 1.32e-04 GATGAACGTC AAGGAGAA TCCAAACCTT chr4:40199842-40199922 23 1.32e-04 GTGTCGGTAG AAGGAGAA GGGGCAGGTG chr11:59314544-59314624 7 1.32e-04 GCAGGA AAGCAGAA GGGAGTTTGA chr4:10187310-10187390 34 1.87e-04 GAAGGCCCAC ATGGAAAA GATGATGGCA chr11:65267130-65267210 42 1.87e-04 gaagaaaaga atagagaa gatagggaaa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AARSARAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:147524443-147524523 2.5e-05 55_[+3]_17 chr8:130586479-130586559 2.5e-05 39_[+3]_33 chr17:40471206-40471286 2.5e-05 53_[+3]_19 chr1:65945562-65945642 2.5e-05 25_[+3]_47 chr6:26031023-26031103 2.5e-05 42_[+3]_30 chr10:3826708-3826788 2.5e-05 37_[+3]_35 chr19:29028955-29029035 2.5e-05 7_[+3]_65 chr2:145273283-145273363 7.8e-05 31_[+3]_41 chr8:2587864-2587944 7.8e-05 28_[+3]_44 chr11:65271889-65271969 7.8e-05 66_[+3]_6 chr7:120633723-120633803 7.8e-05 65_[+3]_7 chr1:227505313-227505393 7.8e-05 32_[+3]_40 chr21:16124082-16124162 7.8e-05 30_[+3]_42 chr7:16304991-16305071 7.8e-05 1_[+3]_71 chr7:12442988-12443068 7.8e-05 36_[+3]_36 chr7:120631701-120631781 0.0001 11_[+3]_61 chr6:43878342-43878422 0.0001 30_[+3]_42 chr11:65267334-65267414 0.0001 32_[+3]_40 chr19:29024863-29024943 0.0001 51_[+3]_21 chr4:40209419-40209499 0.0001 9_[+3]_63 chr11:65270439-65270519 0.00013 7_[+3]_65 chr5:90678471-90678551 0.00013 13_[+3]_59 chr4:40199842-40199922 0.00013 22_[+3]_50 chr11:59314544-59314624 0.00013 6_[+3]_66 chr4:10187310-10187390 0.00019 33_[+3]_39 chr11:65267130-65267210 0.00019 41_[+3]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AARSARAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AARSARAA width=8 seqs=26 chr6:147524443-147524523 ( 56) AAACAAAA 1 chr8:130586479-130586559 ( 40) AAAGAAAA 1 chr17:40471206-40471286 ( 54) AAACAAAA 1 chr1:65945562-65945642 ( 26) AAACAAAA 1 chr6:26031023-26031103 ( 43) AAAGAAAA 1 chr10:3826708-3826788 ( 38) AAACAAAA 1 chr19:29028955-29029035 ( 8) AAAGAAAA 1 chr2:145273283-145273363 ( 32) AAGCAAAA 1 chr8:2587864-2587944 ( 29) AAAGAGAA 1 chr11:65271889-65271969 ( 67) AAGGAAAA 1 chr7:120633723-120633803 ( 66) AAACAGAA 1 chr1:227505313-227505393 ( 33) AAACAGAA 1 chr21:16124082-16124162 ( 31) AAGGAAAA 1 chr7:16304991-16305071 ( 2) AAGGAAAA 1 chr7:12442988-12443068 ( 37) AAACAGAA 1 chr7:120631701-120631781 ( 12) ATAGAAAA 1 chr6:43878342-43878422 ( 31) ATACAAAA 1 chr11:65267334-65267414 ( 33) ATAGAAAA 1 chr19:29024863-29024943 ( 52) ATACAAAA 1 chr4:40209419-40209499 ( 10) ATACAAAA 1 chr11:65270439-65270519 ( 8) AAGCAGAA 1 chr5:90678471-90678551 ( 14) AAGGAGAA 1 chr4:40199842-40199922 ( 23) AAGGAGAA 1 chr11:59314544-59314624 ( 7) AAGCAGAA 1 chr4:10187310-10187390 ( 34) ATGGAAAA 1 chr11:65267130-65267210 ( 42) ATAGAGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AARSARAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.3895 E= 1.8e+001 205 -1134 -1134 -1134 160 -1134 -1134 13 144 -1134 41 -1134 -1134 99 94 -1134 205 -1134 -1134 -1134 144 -1134 41 -1134 205 -1134 -1134 -1134 205 -1134 -1134 -1134 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AARSARAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 1.8e+001 1.000000 0.000000 0.000000 0.000000 0.730769 0.000000 0.000000 0.269231 0.653846 0.000000 0.346154 0.000000 0.000000 0.500000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 0.653846 0.000000 0.346154 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AARSARAA MEME-3 regular expression -------------------------------------------------------------------------------- A[AT][AG][CG]A[AG]AA -------------------------------------------------------------------------------- Time 12.60 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCWGSAG MEME-4 width = 8 sites = 35 llr = 283 E-value = 2.0e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCWGSAG MEME-4 Description -------------------------------------------------------------------------------- Simplified A 3:34::a: pos.-specific C ::7::6:: probability G 7a:1a4:a matrix T :::5:::: bits 2.0 * 1.8 * * ** 1.6 * * ** 1.4 * * ** Relative 1.2 ** * ** Entropy 1.0 *** **** (11.6 bits) 0.8 *** **** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGCTGCAG consensus A AA G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCWGSAG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr14:102176379-10217645 48 1.73e-05 GACCAGCTGA GGCTGCAG GAGAGAGGTC chr15:93426982-93427062 5 1.73e-05 AAAC GGCTGCAG TGATACATGC chr6:27099447-27099527 21 1.73e-05 gggaggcgga ggctgcag tgagctgaga chr11:85779327-85779407 30 1.73e-05 AAGAGCAGAA GGCTGCAG TGGAGACGGG chr2:44706697-44706777 73 3.43e-05 TCCTATAGGT GGCAGCAG chr17:32527093-32527173 21 3.43e-05 ACCATAAGGT GGCAGCAG AGAGCACCTG chr1:145443598-145443678 71 5.21e-05 ctgtctccca ggctggag tg chr6:27859875-27859955 15 5.21e-05 ctgtcgccca ggctggag tgcagtggcg chr14:21560785-21560865 73 5.21e-05 TCCTCCTCCT GGCTGGAG chr21:15916414-15916494 1 5.21e-05 . ggctggag tgcagtggca chr8:130582441-130582521 12 8.57e-05 aggaggctga ggcaggag aatggcatga chr8:22927604-22927684 25 8.57e-05 tcaggagtga agctgcag accttcccag chr2:108363199-108363279 63 8.57e-05 gcacgagtga agctgcag accttcatgg chr4:142253520-142253600 28 8.57e-05 tcaggagtga agctgcag accttctcgg chr6:30783109-30783189 62 8.57e-05 tcaggaatga agctgcag acctttgcag chr6:16266935-16267015 10 8.57e-05 ggaggctga ggcaggag aattgcatga chr17:48157167-48157247 38 8.57e-05 AGCTTTGGCC GGCAGGAG GCGGTGTCGG chr19:29098205-29098285 19 8.57e-05 TTGAGCCCTG AGCTGCAG TTCCGTAGGA chr4:139161616-139161696 8 8.57e-05 aggctta ggcaggag aattgcttga chr9:130880052-130880132 3 1.18e-04 GC AGCAGCAG GCCCTGTTGC chr1:145438935-145439015 34 1.18e-04 AAAGTGCTTT GGATGCAG GGATCCCAGC chr6:68592789-68592869 72 1.18e-04 tatggaggag agcagcag c chr6:68593872-68593952 72 1.35e-04 gtctttctga agctggag g chr16:67850606-67850686 52 1.51e-04 ACCTACAGGG GGAAGCAG AGAGCACGGA chr20:45982496-45982576 62 1.51e-04 GGGGTTGGGG GGAAGCAG GGAAGGGAGA chr11:65192051-65192131 27 1.51e-04 ATATATTAGA GGAAGCAG ATTGTCAAAT chr10:74036374-74036454 4 2.17e-04 GAG GGAAGGAG TGCTAAGGGC chr8:2587864-2587944 68 2.17e-04 gaaaaagcca ggaaggag ggaag chr15:77925953-77926033 5 2.35e-04 AGAG GGCGGCAG GCCTCTCTGG chr9:33722229-33722309 23 2.35e-04 GGCGCCCCCT GGCGGCAG AACGCTTGTG chr1:149858003-149858083 67 2.66e-04 TTGTACACGT AGATGGAG TAGCTC chr7:120718062-120718142 60 2.66e-04 tttgtttttg agatggag tctcactctc chr18:9916478-9916558 73 2.66e-04 TTCAGTTTAA AGATGGAG chr19:6424971-6425051 17 2.85e-04 AGGGGCAGTG GGCGGGAG GCTCAGAGTG chr12:131713619-13171369 51 4.03e-04 caccgcgaag gtctgcag cttcactcct -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCWGSAG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr14:102176379-10217645 1.7e-05 47_[+4]_25 chr15:93426982-93427062 1.7e-05 4_[+4]_68 chr6:27099447-27099527 1.7e-05 20_[+4]_52 chr11:85779327-85779407 1.7e-05 29_[+4]_43 chr2:44706697-44706777 3.4e-05 72_[+4] chr17:32527093-32527173 3.4e-05 20_[+4]_52 chr1:145443598-145443678 5.2e-05 70_[+4]_2 chr6:27859875-27859955 5.2e-05 14_[+4]_58 chr14:21560785-21560865 5.2e-05 72_[+4] chr21:15916414-15916494 5.2e-05 [+4]_72 chr8:130582441-130582521 8.6e-05 11_[+4]_61 chr8:22927604-22927684 8.6e-05 24_[+4]_48 chr2:108363199-108363279 8.6e-05 62_[+4]_10 chr4:142253520-142253600 8.6e-05 27_[+4]_45 chr6:30783109-30783189 8.6e-05 61_[+4]_11 chr6:16266935-16267015 8.6e-05 9_[+4]_63 chr17:48157167-48157247 8.6e-05 37_[+4]_35 chr19:29098205-29098285 8.6e-05 18_[+4]_54 chr4:139161616-139161696 8.6e-05 7_[+4]_65 chr9:130880052-130880132 0.00012 2_[+4]_70 chr1:145438935-145439015 0.00012 33_[+4]_39 chr6:68592789-68592869 0.00012 71_[+4]_1 chr6:68593872-68593952 0.00013 71_[+4]_1 chr16:67850606-67850686 0.00015 51_[+4]_21 chr20:45982496-45982576 0.00015 61_[+4]_11 chr11:65192051-65192131 0.00015 26_[+4]_46 chr10:74036374-74036454 0.00022 3_[+4]_69 chr8:2587864-2587944 0.00022 67_[+4]_5 chr15:77925953-77926033 0.00024 4_[+4]_68 chr9:33722229-33722309 0.00024 22_[+4]_50 chr1:149858003-149858083 0.00027 66_[+4]_6 chr7:120718062-120718142 0.00027 59_[+4]_13 chr18:9916478-9916558 0.00027 72_[+4] chr19:6424971-6425051 0.00028 16_[+4]_56 chr12:131713619-13171369 0.0004 50_[+4]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCWGSAG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCWGSAG width=8 seqs=35 chr14:102176379-10217645 ( 48) GGCTGCAG 1 chr15:93426982-93427062 ( 5) GGCTGCAG 1 chr6:27099447-27099527 ( 21) GGCTGCAG 1 chr11:85779327-85779407 ( 30) GGCTGCAG 1 chr2:44706697-44706777 ( 73) GGCAGCAG 1 chr17:32527093-32527173 ( 21) GGCAGCAG 1 chr1:145443598-145443678 ( 71) GGCTGGAG 1 chr6:27859875-27859955 ( 15) GGCTGGAG 1 chr14:21560785-21560865 ( 73) GGCTGGAG 1 chr21:15916414-15916494 ( 1) GGCTGGAG 1 chr8:130582441-130582521 ( 12) GGCAGGAG 1 chr8:22927604-22927684 ( 25) AGCTGCAG 1 chr2:108363199-108363279 ( 63) AGCTGCAG 1 chr4:142253520-142253600 ( 28) AGCTGCAG 1 chr6:30783109-30783189 ( 62) AGCTGCAG 1 chr6:16266935-16267015 ( 10) GGCAGGAG 1 chr17:48157167-48157247 ( 38) GGCAGGAG 1 chr19:29098205-29098285 ( 19) AGCTGCAG 1 chr4:139161616-139161696 ( 8) GGCAGGAG 1 chr9:130880052-130880132 ( 3) AGCAGCAG 1 chr1:145438935-145439015 ( 34) GGATGCAG 1 chr6:68592789-68592869 ( 72) AGCAGCAG 1 chr6:68593872-68593952 ( 72) AGCTGGAG 1 chr16:67850606-67850686 ( 52) GGAAGCAG 1 chr20:45982496-45982576 ( 62) GGAAGCAG 1 chr11:65192051-65192131 ( 27) GGAAGCAG 1 chr10:74036374-74036454 ( 4) GGAAGGAG 1 chr8:2587864-2587944 ( 68) GGAAGGAG 1 chr15:77925953-77926033 ( 5) GGCGGCAG 1 chr9:33722229-33722309 ( 23) GGCGGCAG 1 chr1:149858003-149858083 ( 67) AGATGGAG 1 chr7:120718062-120718142 ( 60) AGATGGAG 1 chr18:9916478-9916558 ( 73) AGATGGAG 1 chr19:6424971-6425051 ( 17) GGCGGGAG 1 chr12:131713619-13171369 ( 51) GTCTGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCWGSAG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.12623 E= 2.0e+002 38 -1177 140 -1177 -1177 -1177 190 -310 9 156 -1177 -1177 62 -1177 -160 114 -1177 -1177 194 -1177 -1177 118 72 -1177 205 -1177 -1177 -1177 -1177 -1177 194 -1177 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCWGSAG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 2.0e+002 0.314286 0.000000 0.685714 0.000000 0.000000 0.000000 0.971429 0.028571 0.257143 0.742857 0.000000 0.000000 0.371429 0.000000 0.085714 0.542857 0.000000 0.000000 1.000000 0.000000 0.000000 0.571429 0.428571 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCWGSAG MEME-4 regular expression -------------------------------------------------------------------------------- [GA]G[CA][TA]G[CG]AG -------------------------------------------------------------------------------- Time 16.30 secs. ******************************************************************************** ******************************************************************************** MOTIF ARAAAACA MEME-5 width = 8 sites = 8 llr = 85 E-value = 5.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif ARAAAACA MEME-5 Description -------------------------------------------------------------------------------- Simplified A a5aaaa:a pos.-specific C ::::::a: probability G :5:::::: matrix T :::::::: bits 2.0 * ****** 1.8 * ****** 1.6 * ****** 1.4 * ****** Relative 1.2 * ****** Entropy 1.0 ******** (15.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAAAACA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAAAACA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:18390711-18390791 62 2.54e-05 AACCAACACA AGAAAACA CACACACACA chr1:65945562-65945642 40 2.54e-05 aaaacaagac aaaaaaca aacaaacaaa chr1:227505313-227505393 50 2.54e-05 AAAGGGAGGA AAAAAACA GAATGCATAG chr17:20772800-20772880 25 2.54e-05 aagacgatga agaaaaca gtttttggtt chr21:16124082-16124162 58 2.54e-05 aaagggaggg aGAAAACA AATAAATAAA chr10:3826708-3826788 71 2.54e-05 aaaaaacaac aaaaaaca aa chr6:68594467-68594547 52 2.54e-05 tccatgatct aaaaaaca gttgtcttga chr19:29028955-29029035 22 2.54e-05 aaaaagagag agaaaaca caaataccaa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAAAACA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:18390711-18390791 2.5e-05 61_[+5]_11 chr1:65945562-65945642 2.5e-05 39_[+5]_33 chr1:227505313-227505393 2.5e-05 49_[+5]_23 chr17:20772800-20772880 2.5e-05 24_[+5]_48 chr21:16124082-16124162 2.5e-05 57_[+5]_15 chr10:3826708-3826788 2.5e-05 70_[+5]_2 chr6:68594467-68594547 2.5e-05 51_[+5]_21 chr19:29028955-29029035 2.5e-05 21_[+5]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAAAACA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ARAAAACA width=8 seqs=8 chr19:18390711-18390791 ( 62) AGAAAACA 1 chr1:65945562-65945642 ( 40) AAAAAACA 1 chr1:227505313-227505393 ( 50) AAAAAACA 1 chr17:20772800-20772880 ( 25) AGAAAACA 1 chr21:16124082-16124162 ( 58) AGAAAACA 1 chr10:3826708-3826788 ( 71) AAAAAACA 1 chr6:68594467-68594547 ( 52) AAAAAACA 1 chr19:29028955-29029035 ( 22) AGAAAACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAAAACA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.4773 E= 5.3e+003 205 -965 -965 -965 105 -965 94 -965 205 -965 -965 -965 205 -965 -965 -965 205 -965 -965 -965 205 -965 -965 -965 -965 199 -965 -965 205 -965 -965 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAAAACA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 5.3e+003 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAAAACA MEME-5 regular expression -------------------------------------------------------------------------------- A[AG]AAAACA -------------------------------------------------------------------------------- Time 19.94 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:5988987-5989067 9.24e-01 80 chr19:29028955-29029035 1.95e-03 7_[+3(2.49e-05)]_6_[+5(2.54e-05)]_\ 51 chr17:21515561-21515641 7.35e-02 80 chr19:29023826-29023906 9.64e-01 80 chr6:68594467-68594547 2.08e-02 51_[+5(2.54e-05)]_21 chr6:68592789-68592869 1.57e-01 80 chr5:119849076-119849156 8.68e-01 80 chr11:85777819-85777899 1.62e-01 80 chr19:29028144-29028224 9.06e-02 80 chr6:147528614-147528694 3.76e-01 80 chr17:57916454-57916534 5.01e-01 80 chr7:12442988-12443068 2.88e-02 36_[+3(7.84e-05)]_36 chr4:139161616-139161696 8.60e-02 7_[+4(8.57e-05)]_65 chr19:29031430-29031510 8.38e-01 80 chr11:85779327-85779407 3.34e-02 29_[+4(1.73e-05)]_43 chr6:147527139-147527219 8.84e-02 70_[+1(9.88e-05)]_2 chr6:37139733-37139813 6.80e-02 31_[+1(1.37e-05)]_41 chr4:40209419-40209499 3.65e-02 80 chr6:27776423-27776503 5.22e-01 80 chr18:9916478-9916558 1.36e-02 80 chr7:16304991-16305071 5.69e-02 1_[+3(7.84e-05)]_71 chr6:68750861-68750941 6.07e-02 [+1(9.88e-05)]_72 chr17:18529047-18529127 3.25e-01 80 chr19:29098205-29098285 2.12e-01 18_[+4(8.57e-05)]_54 chr10:3826708-3826788 4.23e-03 32_[+3(2.49e-05)]_3_[+3(2.49e-05)]_\ 9_[+5(2.54e-05)]_2_[+5(2.54e-05)]_2 chr17:57918505-57918585 2.66e-01 36_[+1(4.24e-05)]_36 chr6:68596381-68596461 4.67e-01 80 chr21:16124082-16124162 8.06e-04 30_[+3(7.84e-05)]_19_[+5(2.54e-05)]_\ 15 chr17:57915777-57915857 3.75e-01 80 chr19:29024863-29024943 4.49e-02 80 chr6:27099447-27099527 4.32e-02 20_[+4(1.73e-05)]_52 chr19:29026533-29026613 9.17e-01 80 chr1:194829078-194829158 2.66e-01 80 chr18:9917347-9917427 6.72e-01 80 chr6:27803956-27804036 8.11e-02 80 chr17:46620420-46620500 5.09e-01 80 chr21:15916414-15916494 6.98e-02 [+4(5.21e-05)]_72 chr6:26031023-26031103 4.15e-02 42_[+3(2.49e-05)]_30 chr17:32527093-32527173 8.02e-02 20_[+4(3.43e-05)]_52 chr7:120630846-120630926 5.07e-01 80 chr7:120632475-120632555 4.72e-01 80 chrX:154030498-154030578 6.50e-01 80 chr10:5489696-5489776 3.41e-01 10_[+1(6.97e-05)]_62 chr11:65192874-65192954 8.01e-01 80 chr22:37252556-37252636 2.10e-02 41_[+2(1.64e-05)]_31 chr17:40427491-40427571 3.65e-01 80 chr18:3449169-3449249 2.07e-01 80 chr6:68754313-68754393 5.92e-01 80 chr17:48157167-48157247 3.93e-01 37_[+4(8.57e-05)]_35 chr6:68595189-68595269 6.61e-01 80 chr6:147207347-147207427 1.22e-01 80 chr11:65192051-65192131 9.06e-02 80 chr2:30934623-30934703 5.17e-01 80 chr10:74035364-74035444 2.78e-01 52_[+1(9.88e-05)]_20 chr6:16266935-16267015 1.89e-01 9_[+4(8.57e-05)]_63 chr6:30783109-30783189 1.80e-02 61_[+4(8.57e-05)]_11 chr17:36648426-36648506 1.55e-01 80 chr15:40567015-40567095 6.63e-02 28_[+2(1.64e-05)]_44 chr1:145438935-145439015 1.01e-01 80 chr1:150952088-150952168 8.91e-02 59_[+2(4.84e-05)]_13 chr11:65269150-65269230 3.65e-01 80 chr2:114361756-114361836 1.40e-01 18_[+2(1.64e-05)]_54 chr11:59314544-59314624 4.19e-02 80 chr17:20772800-20772880 3.03e-04 24_[+5(2.54e-05)]_48 chr7:16303139-16303219 2.86e-01 80 chr15:67196096-67196176 1.40e-01 19_[+2(4.84e-05)]_53 chr20:45982496-45982576 1.04e-02 80 chr2:27906535-27906615 5.97e-04 28_[+2(7.97e-05)]_35_[+1(4.24e-05)]_\ 1 chr6:27103187-27103267 4.37e-01 80 chr3:187463827-187463907 8.21e-02 64_[+1(6.97e-05)]_8 chr11:5275363-5275443 1.11e-01 80 chr1:227505313-227505393 2.41e-03 32_[+3(7.84e-05)]_9_[+5(2.54e-05)]_\ 23 chr14:21560785-21560865 1.57e-01 72_[+4(5.21e-05)] chr4:40199842-40199922 6.52e-02 80 chr11:19092862-19092942 4.65e-01 80 chr2:219712532-219712612 3.60e-02 69_[+2(4.84e-05)]_3 chr7:12731259-12731339 5.80e-01 80 chr18:8915026-8915106 5.97e-02 80 chr6:27114425-27114505 9.37e-01 80 chr7:120718062-120718142 1.96e-02 37_[+1(4.24e-05)]_3_[+1(4.24e-05)]_\ 24 chr6:147525565-147525645 8.38e-01 80 chr1:78470636-78470716 1.66e-01 80 chr2:158115282-158115362 3.41e-01 80 chr8:91234012-91234092 7.98e-01 80 chr11:65990302-65990382 7.09e-01 80 chr6:37142792-37142872 3.61e-02 37_[+1(1.37e-05)]_35 chr1:201482240-201482320 1.51e-01 80 chr5:179095568-179095648 3.80e-02 6_[+2(4.84e-05)]_66 chr6:26126215-26126295 2.83e-01 80 chr6:27111955-27112035 7.40e-01 80 chr5:90677136-90677216 1.82e-03 27_[+1(1.37e-05)]_45 chr3:46120456-46120536 7.49e-02 80 chr6:68753016-68753096 9.19e-01 80 chr6:26201344-26201424 9.96e-01 80 chr17:72350347-72350427 4.61e-01 80 chr17:20772051-20772131 2.28e-01 80 chr4:10020528-10020608 4.09e-02 39_[+2(4.84e-05)]_33 chr12:131713619-13171369 6.74e-01 80 chr4:79550295-79550375 5.26e-02 80 chr5:90678471-90678551 1.93e-01 80 chr4:142253520-142253600 3.10e-01 27_[+4(8.57e-05)]_45 chr19:29034135-29034215 1.98e-01 80 chr7:142912306-142912386 1.28e-01 80 chr6:27113214-27113294 2.46e-01 80 chr3:5021309-5021389 2.97e-01 80 chr1:8035450-8035530 4.85e-01 80 chr7:120717278-120717358 3.36e-03 19_[+1(1.37e-05)]_53 chr6:36854805-36854885 4.94e-01 80 chr6:27859875-27859955 6.30e-02 14_[+4(5.21e-05)]_58 chr1:159130940-159131020 4.62e-01 80 chr2:108363199-108363279 2.07e-02 62_[+4(8.57e-05)]_10 chr11:65267334-65267414 5.58e-02 80 chr21:15915109-15915189 5.35e-01 80 chr7:120628785-120628865 3.81e-01 80 chr17:57915559-57915639 1.59e-01 23_[+1(1.37e-05)]_14_[+1(6.97e-05)]_\ 12_[+1(1.37e-05)]_7 chr15:22461192-22461272 1.21e-01 14_[+2(1.64e-05)]_31_[+2(4.84e-05)]_\ 19 chr6:26199901-26199981 8.05e-01 80 chr17:46702957-46703037 5.28e-01 80 chr15:93426982-93427062 1.48e-02 4_[+4(1.73e-05)]_68 chr12:54691937-54692017 2.93e-01 80 chr19:42612798-42612878 9.22e-02 80 chr6:27861398-27861478 7.72e-01 80 chr14:102176379-10217645 4.18e-02 47_[+4(1.73e-05)]_25 chr1:9785208-9785288 5.07e-01 80 chr5:94983742-94983822 2.13e-01 56_[+1(2.83e-05)]_16 chr20:32900615-32900695 4.55e-01 80 chr7:22745705-22745785 7.30e-01 80 chr7:120633723-120633803 1.35e-02 65_[+3(7.84e-05)]_7 chr7:22744517-22744597 8.47e-01 80 chr11:85778394-85778474 4.01e-01 80 chr17:48758778-48758858 6.83e-01 80 chr11:65193775-65193855 6.88e-01 80 chr6:68598094-68598174 5.94e-01 80 chr2:243153809-243153889 1.31e-01 31_[+2(1.64e-05)]_41 chr6:26159778-26159858 1.34e-01 80 chr17:37778355-37778435 3.27e-01 80 chr19:42210829-42210909 8.72e-01 80 chrX:124288526-124288606 3.44e-01 21_[+1(9.88e-05)]_51 chr3:195577882-195577962 7.32e-01 80 chr12:25099980-25100060 6.77e-01 80 chr8:145159260-145159340 5.12e-01 80 chr2:44706697-44706777 8.93e-03 72_[+4(3.43e-05)] chr9:130880052-130880132 1.69e-03 49_[+2(4.84e-05)]_23 chr19:13265002-13265082 3.00e-01 7_[+1(4.24e-05)]_1_[+1(9.88e-05)]_\ [+1(9.88e-05)]_48 chr6:43878342-43878422 1.28e-02 3_[+5(5.06e-05)]_69 chr16:85589562-85589642 1.47e-03 3_[+1(6.97e-05)]_69 chr19:34992556-34992636 1.63e-01 80 chr9:33722229-33722309 6.74e-03 14_[+2(1.64e-05)]_58 chr8:22927604-22927684 3.76e-01 24_[+4(8.57e-05)]_48 chr11:65189433-65189513 1.46e-01 80 chr16:15667893-15667973 5.83e-02 80 chr8:130582441-130582521 1.53e-01 11_[+4(8.57e-05)]_61 chr1:28833411-28833491 9.48e-01 80 chr1:151254568-151254648 1.12e-01 80 chrX:152665695-152665775 8.62e-01 80 chr3:151922891-151922971 3.15e-01 80 chr1:65945562-65945642 3.59e-03 20_[+3(2.49e-05)]_11_[+5(2.54e-05)]_\ 11_[+3(2.49e-05)]_14 chr3:151990812-151990892 1.17e-01 80 chr6:27775462-27775542 6.14e-01 80 chr17:46621541-46621621 8.96e-01 80 chr17:39819066-39819146 9.13e-02 2_[+2(1.64e-05)]_70 chr6:26029179-26029259 2.81e-01 80 chr14:70163471-70163551 7.48e-01 80 chrX:10087662-10087742 2.03e-01 80 chr17:40471206-40471286 5.12e-03 48_[+3(2.49e-05)]_3_[+3(2.49e-05)]_\ 13 chr16:67850606-67850686 4.38e-02 80 chr19:41140555-41140635 1.18e-01 45_[+2(1.64e-05)]_27 chr9:135897880-135897960 1.74e-01 80 chr3:85553382-85553462 3.81e-01 80 chr11:60897380-60897460 5.55e-02 46_[+2(1.64e-05)]_26 chr20:45983746-45983826 4.14e-01 80 chr7:120634750-120634830 4.54e-02 80 chr11:65267130-65267210 2.35e-02 80 chr5:90675759-90675839 8.20e-02 80 chr20:362368-362448 6.33e-01 80 chr19:18390711-18390791 6.72e-04 26_[+1(6.97e-05)]_27_[+5(2.54e-05)]_\ 11 chr15:93444742-93444822 2.32e-01 80 chr2:217642485-217642565 6.53e-02 80 chr1:145438736-145438816 9.00e-02 18_[+1(6.97e-05)]_54 chr6:43596274-43596354 5.69e-01 80 chr17:79075651-79075731 8.19e-01 80 chr4:127656498-127656578 3.68e-02 65_[+1(1.37e-05)]_7 chr5:90677833-90677913 8.66e-03 80 chr6:147205350-147205430 3.61e-01 80 chr9:138332623-138332703 2.55e-03 3_[+1(9.88e-05)]_69 chr5:90676476-90676556 8.63e-01 80 chr7:120629871-120629951 2.73e-01 80 chr6:26202589-26202669 7.30e-01 80 chr7:22743505-22743585 1.20e-01 80 chr7:5569788-5569868 8.73e-01 80 chr7:120628156-120628236 4.79e-01 80 chr6:29720949-29721029 3.75e-01 80 chr17:78549275-78549355 8.13e-02 48_[+2(1.64e-05)]_24 chr1:244436430-244436510 2.45e-01 80 chr5:95064957-95065037 7.02e-01 80 chr16:88905530-88905610 9.31e-01 80 chr19:29032135-29032215 6.37e-02 80 chr17:43212796-43212876 8.57e-01 80 chr11:65271889-65271969 1.80e-02 66_[+3(7.84e-05)]_6 chr6:68593872-68593952 2.58e-01 80 chr15:77925953-77926033 2.60e-01 80 chr8:124195820-124195900 8.57e-02 62_[+1(9.88e-05)]_2_[+1(1.37e-05)] chr6:26158535-26158615 8.29e-01 80 chr11:71511547-71511627 7.95e-01 80 chr12:54773574-54773654 7.29e-02 48_[+2(7.97e-05)]_24 chr8:130585326-130585406 8.84e-01 80 chr1:51435524-51435604 5.80e-02 60_[+1(6.97e-05)]_12 chr3:195870032-195870112 6.95e-01 80 chr16:15670543-15670623 8.35e-01 80 chr6:148712-148792 1.59e-01 3_[+2(1.64e-05)]_69 chr10:3827255-3827335 4.56e-01 80 chr6:26203491-26203571 7.56e-02 80 chr4:74964463-74964543 4.89e-01 80 chr10:3828119-3828199 7.86e-01 80 chr4:10187310-10187390 4.60e-02 80 chr5:53609577-53609657 1.47e-02 20_[+1(9.88e-05)]_52 chr19:36248881-36248961 1.40e-01 80 chrX:49047626-49047706 5.31e-01 80 chr8:2587864-2587944 1.43e-02 28_[+3(7.84e-05)]_44 chr8:130586479-130586559 4.15e-03 39_[+3(2.49e-05)]_33 chr10:65025188-65025268 5.58e-01 80 chr1:68153584-68153664 7.14e-01 80 chr10:5521473-5521553 6.36e-02 46_[+1(2.83e-05)]_26 chr11:63953439-63953519 1.77e-01 80 chr7:120631701-120631781 5.66e-02 80 chr12:58299209-58299289 9.58e-01 80 chr1:149858003-149858083 2.93e-01 80 chr11:65270439-65270519 5.57e-02 80 chr6:7199823-7199903 3.12e-01 67_[+1(4.24e-05)]_5 chr19:6424971-6425051 4.41e-01 80 chr6:30098932-30099012 4.63e-02 55_[+2(7.97e-05)]_17 chr6:147213184-147213264 9.49e-01 80 chr2:145273283-145273363 1.78e-02 31_[+3(7.84e-05)]_41 chr10:74036374-74036454 7.70e-02 80 chr10:94451887-94451967 5.26e-01 80 chr17:38574268-38574348 4.40e-02 20_[+1(9.88e-05)]_52 chr6:147524443-147524523 2.09e-02 55_[+3(2.49e-05)]_17 chr1:145443598-145443678 3.70e-03 10_[+1(1.37e-05)]_[+1(9.88e-05)]_\ [+1(9.88e-05)]_36_[+4(5.21e-05)]_2 chr19:816652-816732 9.98e-01 80 chr19:17607219-17607299 8.20e-01 80 chr5:95066464-95066544 3.79e-02 80 chr10:72432948-72433028 3.26e-01 80 chr11:59313906-59313986 4.31e-01 80 chr12:45342650-45342730 8.93e-02 66_[+2(7.97e-05)]_6 chr11:65275239-65275319 2.56e-02 80 chr16:47496271-47496351 7.28e-01 80 chr7:25605654-25605734 1.07e-01 2_[+2(7.97e-05)]_70 chr6:27804810-27804890 2.79e-01 80 chr7:100184144-100184224 7.10e-01 80 chr12:57632972-57633052 1.12e-01 31_[+2(1.64e-05)]_41 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n06.farnam.hpc.yale.internal ********************************************************************************