******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/MGA.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr20:56115052-56115132 1.0000 80 chr8:61968443-61968523 1.0000 80 chr13:52733824-52733904 1.0000 80 chr17:36631049-36631129 1.0000 80 chr12:109024854-10902493 1.0000 80 chr15:36872206-36872286 1.0000 80 chr4:2470214-2470294 1.0000 80 chr8:2590235-2590315 1.0000 80 chr22:29076125-29076205 1.0000 80 chr21:31034155-31034235 1.0000 80 chr21:38729171-38729251 1.0000 80 chr3:112738670-112738750 1.0000 80 chr4:110685703-110685783 1.0000 80 chr1:153377301-153377381 1.0000 80 chr10:103986132-10398621 1.0000 80 chr5:14250328-14250408 1.0000 80 chr9:99015578-99015658 1.0000 80 chr7:22162910-22162990 1.0000 80 chr5:442496-442576 1.0000 80 chr5:89769775-89769855 1.0000 80 chr22:43547876-43547956 1.0000 80 chr7:100951918-100951998 1.0000 80 chr1:43638446-43638526 1.0000 80 chr9:117266780-117266860 1.0000 80 chr18:9321108-9321188 1.0000 80 chr6:34458975-34459055 1.0000 80 chr19:41102828-41102908 1.0000 80 chr3:37901872-37901952 1.0000 80 chr22:50541542-50541622 1.0000 80 chr7:99775390-99775470 1.0000 80 chr2:30670655-30670735 1.0000 80 chr16:11761767-11761847 1.0000 80 chr16:87903289-87903369 1.0000 80 chr2:239147750-239147830 1.0000 80 chr17:38115408-38115488 1.0000 80 chr16:28891515-28891595 1.0000 80 chr5:142599394-142599474 1.0000 80 chr7:22539726-22539806 1.0000 80 chr16:2389599-2389679 1.0000 80 chr11:66336125-66336205 1.0000 80 chr1:203296873-203296953 1.0000 80 chr11:64739471-64739551 1.0000 80 chr8:9030535-9030615 1.0000 80 chr11:2920104-2920184 1.0000 80 chrX:39966737-39966817 1.0000 80 chr11:72524848-72524928 1.0000 80 chr16:29625207-29625287 1.0000 80 chr3:193788412-193788492 1.0000 80 chr1:32666344-32666424 1.0000 80 chr7:106750497-106750577 1.0000 80 chr9:86535859-86535939 1.0000 80 chr4:13546823-13546903 1.0000 80 chr6:109761531-109761611 1.0000 80 chr2:242766099-242766179 1.0000 80 chr1:2107279-2107359 1.0000 80 chr17:62961986-62962066 1.0000 80 chr8:144951147-144951227 1.0000 80 chr1:21051715-21051795 1.0000 80 chr8:145551121-145551201 1.0000 80 chr3:56717415-56717495 1.0000 80 chr8:144823889-144823969 1.0000 80 chr17:77776523-77776603 1.0000 80 chr12:8179678-8179758 1.0000 80 chr9:129921706-129921786 1.0000 80 chr9:138800197-138800277 1.0000 80 chr22:19879825-19879905 1.0000 80 chr11:66326699-66326779 1.0000 80 chr5:38291625-38291705 1.0000 80 chr10:23003830-23003910 1.0000 80 chr19:18527228-18527308 1.0000 80 chr8:12976402-12976482 1.0000 80 chr17:80696252-80696332 1.0000 80 chr18:20047893-20047973 1.0000 80 chr3:13460585-13460665 1.0000 80 chr1:896799-896879 1.0000 80 chr9:131190983-131191063 1.0000 80 chr19:10589876-10589956 1.0000 80 chr8:72917464-72917544 1.0000 80 chr13:103426276-10342635 1.0000 80 chr5:176794503-176794583 1.0000 80 chr1:112282232-112282312 1.0000 80 chr1:182573671-182573751 1.0000 80 chr19:843557-843637 1.0000 80 chr8:61966085-61966165 1.0000 80 chr13:114881032-11488111 1.0000 80 chr20:31220260-31220340 1.0000 80 chr3:185543763-185543843 1.0000 80 chr1:41274756-41274836 1.0000 80 chr17:47755682-47755762 1.0000 80 chr1:12123384-12123464 1.0000 80 chr3:72204884-72204964 1.0000 80 chr6:35465590-35465670 1.0000 80 chr15:76031365-76031445 1.0000 80 chr11:65879723-65879803 1.0000 80 chr1:109841392-109841472 1.0000 80 chr1:2161826-2161906 1.0000 80 chr1:93250940-93251020 1.0000 80 chr19:3613109-3613189 1.0000 80 chr19:41197203-41197283 1.0000 80 chr1:205290655-205290735 1.0000 80 chr20:49092610-49092690 1.0000 80 chr10:82529547-82529627 1.0000 80 chr8:98788654-98788734 1.0000 80 chr1:161409745-161409825 1.0000 80 chr8:48091859-48091939 1.0000 80 chr7:158798511-158798591 1.0000 80 chr7:92533811-92533891 1.0000 80 chr16:21531936-21532016 1.0000 80 chr17:56327218-56327298 1.0000 80 chr8:144301280-144301360 1.0000 80 chr19:17953249-17953329 1.0000 80 chr16:31438850-31438930 1.0000 80 chr14:50779151-50779231 1.0000 80 chrX:101187193-101187273 1.0000 80 chr19:40330709-40330789 1.0000 80 chr19:38943522-38943602 1.0000 80 chr11:14664990-14665070 1.0000 80 chr17:6927550-6927630 1.0000 80 chr7:44261044-44261124 1.0000 80 chr8:30770565-30770645 1.0000 80 chr13:110359980-11036006 1.0000 80 chr1:235108292-235108372 1.0000 80 chr2:61035730-61035810 1.0000 80 chr15:41055728-41055808 1.0000 80 chr15:65596240-65596320 1.0000 80 chr17:79197206-79197286 1.0000 80 chr7:10819526-10819606 1.0000 80 chr3:194991340-194991420 1.0000 80 chr21:47368507-47368587 1.0000 80 chr10:13459689-13459769 1.0000 80 chr20:33762570-33762650 1.0000 80 chr1:154972329-154972409 1.0000 80 chr16:30441877-30441957 1.0000 80 chr9:37079478-37079558 1.0000 80 chr19:3520436-3520516 1.0000 80 chr10:124713986-12471406 1.0000 80 chr10:86016885-86016965 1.0000 80 chr7:107300355-107300435 1.0000 80 chr7:40174596-40174676 1.0000 80 chr8:103602981-103603061 1.0000 80 chr4:90032304-90032384 1.0000 80 chr19:56151563-56151643 1.0000 80 chr11:108463669-10846374 1.0000 80 chr16:85089694-85089774 1.0000 80 chr11:14913102-14913182 1.0000 80 chr15:83315979-83316059 1.0000 80 chr14:23355863-23355943 1.0000 80 chr1:53926209-53926289 1.0000 80 chr9:77642649-77642729 1.0000 80 chr2:75185468-75185548 1.0000 80 chr12:4381750-4381830 1.0000 80 chr1:223316221-223316301 1.0000 80 chr22:43253491-43253571 1.0000 80 chr10:43047657-43047737 1.0000 80 chr12:19592149-19592229 1.0000 80 chr8:71581616-71581696 1.0000 80 chr20:35203143-35203223 1.0000 80 chr20:56100074-56100154 1.0000 80 chr1:226814422-226814502 1.0000 80 chr3:15157888-15157968 1.0000 80 chr5:132201864-132201944 1.0000 80 chr17:74382105-74382185 1.0000 80 chr19:5803755-5803835 1.0000 80 chr10:49514372-49514452 1.0000 80 chr5:180479710-180479790 1.0000 80 chr22:38494033-38494113 1.0000 80 chr19:49631175-49631255 1.0000 80 chr1:158985361-158985441 1.0000 80 chr21:38361908-38361988 1.0000 80 chr1:65785685-65785765 1.0000 80 chr17:80316851-80316931 1.0000 80 chr12:122711062-12271114 1.0000 80 chr17:42015577-42015657 1.0000 80 chr10:31321008-31321088 1.0000 80 chr6:166726860-166726940 1.0000 80 chr13:26760528-26760608 1.0000 80 chr2:98316705-98316785 1.0000 80 chr14:100069988-10007006 1.0000 80 chrX:106920081-106920161 1.0000 80 chr1:212687614-212687694 1.0000 80 chr7:117067334-117067414 1.0000 80 chr17:61926853-61926933 1.0000 80 chr13:21347786-21347866 1.0000 80 chr3:135969931-135970011 1.0000 80 chr8:146052057-146052137 1.0000 80 chrX:39547850-39547930 1.0000 80 chr15:29077272-29077352 1.0000 80 chr4:53728661-53728741 1.0000 80 chr2:23583739-23583819 1.0000 80 chr19:50249792-50249872 1.0000 80 chr16:82204146-82204226 1.0000 80 chr8:86090106-86090186 1.0000 80 chr11:18656412-18656492 1.0000 80 chr11:3425679-3425759 1.0000 80 chr5:172710878-172710958 1.0000 80 chr12:3069244-3069324 1.0000 80 chr2:33824690-33824770 1.0000 80 chr20:34189480-34189560 1.0000 80 chr11:68025088-68025168 1.0000 80 chr17:79934592-79934672 1.0000 80 chr2:106015802-106015882 1.0000 80 chr8:142401560-142401640 1.0000 80 chr9:124976040-124976120 1.0000 80 chr16:57318369-57318449 1.0000 80 chr11:14664645-14664725 1.0000 80 chr2:161126473-161126553 1.0000 80 chr5:96519530-96519610 1.0000 80 chr11:119210363-11921044 1.0000 80 chr7:50428323-50428403 1.0000 80 chr1:29676794-29676874 1.0000 80 chr16:3355238-3355318 1.0000 80 chr2:54557758-54557838 1.0000 80 chr17:38020392-38020472 1.0000 80 chr5:154062566-154062646 1.0000 80 chr12:118783305-11878338 1.0000 80 chr16:88184876-88184956 1.0000 80 chr1:112163251-112163331 1.0000 80 chr15:34730087-34730167 1.0000 80 chr18:8660059-8660139 1.0000 80 chr4:1037867-1037947 1.0000 80 chr11:59570275-59570355 1.0000 80 chr8:27737164-27737244 1.0000 80 chr8:103819775-103819855 1.0000 80 chr3:111805275-111805355 1.0000 80 chrX:135180546-135180626 1.0000 80 chr10:45496941-45497021 1.0000 80 chr19:18700390-18700470 1.0000 80 chr6:14804816-14804896 1.0000 80 chr5:43042812-43042892 1.0000 80 chr2:182757037-182757117 1.0000 80 chr7:913166-913246 1.0000 80 chr17:40897169-40897249 1.0000 80 chr11:316301-316381 1.0000 80 chr4:6711101-6711181 1.0000 80 chr3:46792340-46792420 1.0000 80 chr11:67044306-67044386 1.0000 80 chr16:89884050-89884130 1.0000 80 chr6:150740405-150740485 1.0000 80 chr1:156131283-156131363 1.0000 80 chr18:158213-158293 1.0000 80 chr5:8457424-8457504 1.0000 80 chr4:169930885-169930965 1.0000 80 chrX:129402980-129403060 1.0000 80 chr6:39083079-39083159 1.0000 80 chr10:99473869-99473949 1.0000 80 chr9:93956312-93956392 1.0000 80 chr5:176544059-176544139 1.0000 80 chr19:39993388-39993468 1.0000 80 chr11:124736414-12473649 1.0000 80 chr6:13874161-13874241 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_MGA/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/MGA.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.187 C 0.31 G 0.314 T 0.188 Background letter frequencies (from file dataset with add-one prior applied): A 0.187 C 0.31 G 0.314 T 0.188 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF RSCACGTG MEME-1 width = 8 sites = 194 llr = 1236 E-value = 2.8e-093 ******************************************************************************** -------------------------------------------------------------------------------- Motif RSCACGTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 31:9:11: pos.-specific C 14a:8:2: probability G 44:::9:a matrix T 2::11:7: bits 2.4 2.2 1.9 * 1.7 ** * Relative 1.4 ** * Entropy 1.2 ** *** (9.2 bits) 1.0 ****** 0.7 ****** 0.5 ****** 0.2 ******** 0.0 -------- Multilevel GGCACGTG consensus AC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSCACGTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:23583739-23583819 19 1.96e-05 AGGAGGCCCC AGCACGTG GTCAAGCAGG chr12:122711062-12271114 21 1.96e-05 CAGCAGCTGC AGCACGTG GACGGTGGAC chr12:4381750-4381830 23 1.96e-05 CATGCGTTAG AGCACGTG TCAGGGCCGA chr16:85089694-85089774 27 1.96e-05 CCATGTGAGA AGCACGTG CCAGCAGGCA chr11:108463669-10846374 55 1.96e-05 GACCCGTGCG AGCACGTG GGTGCGCGCG chr17:6927550-6927630 34 1.96e-05 TTGCAGATGG AGCACGTG GTCCAGGCAT chrX:101187193-101187273 51 1.96e-05 GGGATGTGAA AGCACGTG GGCCTCGCAC chr16:31438850-31438930 72 1.96e-05 GCGTGGGAAA AGCACGTG G chr8:98788654-98788734 27 1.96e-05 TTATCTGCCG AGCACGTG TTTCCTTTCT chr19:41197203-41197283 57 1.96e-05 GCAGGTGGTC AGCACGTG GGGGGGGGTG chr19:3613109-3613189 6 1.96e-05 GTTCC AGCACGTG CGCGTCCAGT chr1:109841392-109841472 29 1.96e-05 CTGCAGACAG AGCACGTG TCTGGGTCCC chr15:76031365-76031445 24 1.96e-05 CGCCTCCCTC AGCACGTG GTGCATGCGC chr1:112282232-112282312 44 1.96e-05 CCCCCAACGA AGCACGTG ACCCTCGTGT chr5:442496-442576 17 1.96e-05 CTCGTGGTTT AGCACGTG CTTCTTCCTC chr12:109024854-10902493 44 1.96e-05 AGAACTGCAC AGCACGTG CTGTCTTCAC chr4:1037867-1037947 55 3.89e-05 TGAACCAGCC ACCACGTG GTCCCCGGAG chr7:10819526-10819606 61 3.89e-05 CGCCGCGTTC ACCACGTG GGCAAAGGGG chr19:18527228-18527308 48 3.89e-05 acacgctgcc accacgtg cggcCTCCCA chr2:30670655-30670735 38 3.89e-05 TCAAGTGGTC ACCACGTG CGGGGCTTCG chr15:36872206-36872286 34 3.89e-05 GCGCTTAGGA ACCACGTG TCACACATGA chr1:29676794-29676874 14 7.17e-05 ggtcgttcag ggcacgtg ttgagaggac chr20:34189480-34189560 9 7.17e-05 TCAGGTCC GGCACGTG CGTAGCGAGT chr12:3069244-3069324 63 7.17e-05 GGAAGAGCGA GGCACGTG GAGGCGGCGC chrX:39547850-39547930 22 7.17e-05 TTAGGCACAA GGCACGTG GCGCGCCTCG chr3:135969931-135970011 46 7.17e-05 GGGTAGCAAA GGCACGTG TCGGAAGCAG chr13:26760528-26760608 57 7.17e-05 GCGTCTGCGT GGCACGTG GGCCCCGCAG chr2:239147750-239147830 50 7.17e-05 TCGATGGCCT GGCACGTG GACACGAACG chr16:11761767-11761847 32 7.17e-05 tggcgtggca ggcacgtg gtcagtgttc chr5:176544059-176544139 53 1.04e-04 GGCTGTGCTG GCCACGTG CACCCGGCTG chr19:18700390-18700470 57 1.04e-04 CTGCTCGCCG GCCACGTG CGCAGCCTGC chr5:172710878-172710958 52 1.04e-04 GAGACCGGGC GCCACGTG CTTACCCGGC chr15:83315979-83316059 34 1.04e-04 AAGGTGTGAA GCCACGTG ACCTGCCCAG chr1:235108292-235108372 30 1.04e-04 ttgaacactt gccacgtg ctggacacgg chr7:44261044-44261124 46 1.04e-04 GCAGGGGGCG GCCACGTG CGGCGCAGGC chr17:56327218-56327298 16 1.04e-04 CCGGAGCCCG GCCACGTG GCGGTCACGT chr17:77776523-77776603 39 1.04e-04 GACCGGTTGG GCCACGTG GGCTCGCTGG chr1:21051715-21051795 30 1.04e-04 acatgactca gccacgtg tcaccccagt chr2:242766099-242766179 39 1.04e-04 CTCGCTCCAC GCCACGTG CTTCAAGCGC chr8:9030535-9030615 49 1.04e-04 GCAGTCTGAA GCCACGTG AATAGCACCA chr5:14250328-14250408 6 1.04e-04 TGCCG GCCACGTG GCCAGCATGC chr1:153377301-153377381 46 1.04e-04 GAAGGACCCA GCCACGTG GTACTGCCTC chr17:36631049-36631129 63 1.04e-04 TGCGAGGAGA GCCACGTG TGGGCCAGCC chr4:6711101-6711181 8 1.24e-04 CGGGTGC TGCACGTG ATTGAGGGCG chr8:103819775-103819855 35 1.24e-04 GGCTCCTCTG TGCACGTG CCTTCCGCCC chr15:34730087-34730167 24 1.24e-04 gtgcacgttt tgcacgtg tatcccagaa chr11:14664645-14664725 7 1.24e-04 AGAACG TGCACGTG GAGTGCTACT chr8:30770565-30770645 18 1.24e-04 CCAGAGGCCC TGCACGTG GAAGCTCGAA chr20:31220260-31220340 46 1.24e-04 CTGGAGCACA TGCACGTG TGTTCCTGCC chr1:896799-896879 53 1.24e-04 GACATCGTCC TGCACGTG GCTGCCAAGG chr11:72524848-72524928 9 1.24e-04 ggaacctc tgcacgtg ctcttctcga chr16:88184876-88184956 41 1.43e-04 GCCAGGAGCG TCCACGTG GTCAGCCAGC chr17:38020392-38020472 35 1.43e-04 ACTCGGCCTC TCCACGTG CTCCTGCCGT chr21:47368507-47368587 19 1.43e-04 AATATTTGCC TCCACGTG GCTAAGGCCA chr8:12976402-12976482 30 1.43e-04 TCGCTGGAGC TCCACGTG TAAAGAATGA chr5:38291625-38291705 24 1.43e-04 TCCACGTGTC TCCACGTG TCTTATCTGG chr7:913166-913246 32 1.67e-04 AAGCGTGTTG AACACGTG GCTCTCAGAC chr7:50428323-50428403 10 1.67e-04 CACATCTAA AACACGTG TGCAGTTACA chr17:79934592-79934672 32 1.67e-04 GGCGGGGCGG AACACGTG CGAGTGCTGT chr1:158985361-158985441 47 1.67e-04 GAGAACAGGA AGCATGTG CTCAGTGCAC chr16:30441877-30441957 51 1.67e-04 ATTGCCCTGA AACACGTG GCCCCTTATG chr2:61035730-61035810 4 1.67e-04 cta agcatgtg cggccacacc chr8:61966085-61966165 68 1.67e-04 aacagagatg agcatgtg gccca chr16:28891515-28891595 73 1.67e-04 GTTCTTCCGC AGCATGTG chr22:50541542-50541622 41 1.67e-04 AGCAGAGGGG AACACGTG GTTGTAGCGT chr3:112738670-112738750 24 1.67e-04 ATtggttacc aacacgtg gccgcgtaga chr20:56115052-56115132 66 1.67e-04 GGGTGTTGCT AGCATGTG CTTTACT chr9:93956312-93956392 31 1.90e-04 GGCTCAGCTG AGCACATG CACAACCCTC chr6:14804816-14804896 32 1.90e-04 GGCAGCCTCG AGCACATG CTCACCACAT chr1:112163251-112163331 43 1.90e-04 TCCGTAGCTT ACCATGTG TTCGCCTTTT chr1:161409745-161409825 20 1.90e-04 CAGCGAGGTG AGCACATG ACAAGGAAGA chr22:19879825-19879905 34 1.90e-04 CAGCGAAGTC AGCACATG CCCGAGCGGC chr3:193788412-193788492 31 1.90e-04 GTGATGTGTG AGCACATG TGATTCCCGC chr5:142599394-142599474 24 1.90e-04 aggGTTCCGA AGCACATG GTCTGGCACA chr21:31034155-31034235 54 2.02e-04 ACACGTGTTA ACCACATG CATGTACACA chr5:96519530-96519610 14 2.41e-04 AGTTTAAGGT GACACGTG GAGAGCGCGG chr2:33824690-33824770 66 2.41e-04 GTAGGGTGCC GGCATGTG CTAGCCT chr20:49092610-49092690 25 2.41e-04 CTAAATTCAA GGCATGTG CCACATCCTT chr10:99473869-99473949 12 3.32e-04 CTGCTGGGCA AGCACGAG CTGGTCCCCG chr11:67044306-67044386 48 3.32e-04 ttacagccga gccatgtg ctgctgcgtg chr11:59570275-59570355 2 3.32e-04 A GCCATGTG CTGGATCAGA chr12:118783305-11878338 23 3.32e-04 CAAGGAAAAA GCCATGTG TTTGGGAAGA chr11:3425679-3425759 34 3.32e-04 TGGAACCTGC GCCATGTG CTCTGGGGGC chr5:180479710-180479790 17 3.32e-04 CGAGGCCGCG CGCACGTG GTTCGGTTCT chr20:35203143-35203223 37 3.32e-04 CGACCCAGGA GCCATGTG CTCCGACTCG chr1:154972329-154972409 29 3.32e-04 TACCCTTCGG CGCACGTG GCCCGGCCAG chr20:33762570-33762650 28 3.32e-04 GGACACCTAA CGCACGTG CTGGAAGGCC chr19:38943522-38943602 68 3.32e-04 GAGGACTTGC AGCACGAG GAGAA chr9:129921706-129921786 54 3.32e-04 CTGACCACCT GCCATGTG ACTGCCTGCG chr1:2107279-2107359 30 3.32e-04 AGGAGCTAGC GGCACATG CGTCCTGACC chr1:32666344-32666424 62 3.32e-04 CGATGAGTTT GGCACATG GCTTTGGAGC chr18:9321108-9321188 30 3.32e-04 gaggaatgtg gccatgtg gcctgagtca chr5:43042812-43042892 44 4.47e-04 GAAGAAGTTG CCCACGTG GCGGTGGGGC chr11:119210363-11921044 24 4.47e-04 CTCGTTCACC AGCACGCG GTCGAAGGGC chr11:18656412-18656492 10 4.47e-04 TCAAATTCG GCCACATG CCGTGCGCTT chr16:82204146-82204226 53 4.47e-04 GGCCGTGTTA CCCACGTG TTTTGTCTTC chr6:166726860-166726940 40 4.47e-04 tcacacaact agcacgcg gccaggggca chr1:53926209-53926289 14 4.47e-04 CCTCCGTTTC CCCACGTG CAGGTGAGGG chr17:79197206-79197286 67 4.47e-04 TCTGTCCCCA CCCACGTG CGCGAC chr7:92533811-92533891 21 4.47e-04 tcagcatgca gccacatg gccccacatg chr10:82529547-82529627 15 4.47e-04 GAATGGCTGG GCCACATG TTTTTCACAA chr11:65879723-65879803 47 4.47e-04 ctgcatgcct gccacatg gcctgccttc chr1:182573671-182573751 7 4.47e-04 AGCTGG AGCACGCG GAGCTGCACC chr13:103426276-10342635 19 4.47e-04 CCGCCTCAGT AGCACGCG GACGGCTGGA chr17:80696252-80696332 27 4.47e-04 CCTTGTGACT CCCACGTG GTAGCTTCTG chr9:138800197-138800277 9 4.47e-04 AGAGCCGG CCCACGTG CCGCCCACCG chr11:66336125-66336205 68 4.47e-04 actgacctct atcacgtg cttgt chr16:2389599-2389679 4 4.47e-04 TCT CCCACGTG CTCCCTGCCT chr9:117266780-117266860 60 4.47e-04 ACTGTCCAGC AGCACGCG CAGGGTGCGC chr1:43638446-43638526 25 4.47e-04 GGTCTTCGAT CCCACGTG GCCAACAATA chr7:100951918-100951998 42 4.47e-04 ccacgtggag cccacgtg gagcccacgg chr7:22162910-22162990 14 4.47e-04 AGCAGCATGA ACCACGAG GCAAGCCCGT chr8:142401560-142401640 65 5.22e-04 TCTTCTGAGC ACCACGCG TCCCGTGG chr1:65785685-65785765 43 5.22e-04 CTCAGTCTGC TGCATGTG GCTCAAAAgg chrX:129402980-129403060 18 5.65e-04 TACTTACATG TGCACATG TGCAGCTACT chr5:132201864-132201944 14 5.65e-04 GCCAAATGAA ACCTCGTG CTCCTCTGCT chr3:15157888-15157968 23 5.65e-04 tgagttctcc tccatgtg ctctgtcaac chr3:194991340-194991420 41 5.65e-04 AAGGTTAAGC ACCTCGTG CGCCTCGAAC chr18:20047893-20047973 57 5.65e-04 acatgctttt tccatgtg agaactgaga chr7:106750497-106750577 39 5.65e-04 agagagataa tccatgtg cttgggagac chr11:2920104-2920184 49 5.65e-04 CCCCGAAGCC TGCACATG CACTCTAATG chr6:13874161-13874241 66 6.09e-04 CGAAGGCGAG GGCACGAG GGGGTGG chr10:124713986-12471406 9 6.09e-04 TGCGCGCC GGCACGAG GGTGTTTTCG chr2:182757037-182757117 39 7.15e-04 CTGGGCGCCT GCCACGAG TTCTGGGAGA chr17:74382105-74382185 57 7.15e-04 CTCTTCCGGA GTCACGTG CAGCCCCTTT chr4:90032304-90032384 38 7.15e-04 GCCCGCTCCC GGCACGCG AGGATCCTCC chr19:40330709-40330789 70 7.15e-04 tcctccagct gtcacgtg cag chr1:93250940-93251020 65 7.15e-04 TCAGGGCCCT GGCACGCG GTGCTGAC chr5:176794503-176794583 44 7.15e-04 CAGCCCTGAC GCCACGAG GAAGGTGCGT chr3:13460585-13460665 29 7.15e-04 ACACATGGCT GTCACGTG GTCACACCCC chr10:23003830-23003910 65 7.15e-04 ACTCACCCAC GCCACGAG TCAGGAGA chr8:2590235-2590315 30 7.15e-04 ggtgatgctt gtcacgtg cccgccacaa chr4:2470214-2470294 42 7.15e-04 CCCAGGGCTT GGCACGCG GGGATGCTGA chr16:3355238-3355318 70 8.09e-04 GACAGCGACA GCCACGCG GTG chr4:53728661-53728741 29 8.09e-04 CCTCATTCAG AACATGTG CACCATCGCC chr8:146052057-146052137 54 8.09e-04 TTCGCCGGGA GCCACGCG GGGAGGTCCA chr17:61926853-61926933 53 8.09e-04 AGCCTTGATG GCCACGCG GTGTCCTCGC chr10:49514372-49514452 71 8.09e-04 GTCCCCTGGG GCCACGCG CC chr22:43253491-43253571 22 8.09e-04 GTGGCTGCCT GCCACGCG CGCTGCCATA chr19:17953249-17953329 63 8.09e-04 CTGGCAGGCG GCCACGCG GCGCAGGGCT chr11:64739471-64739551 64 8.09e-04 GCAACTTCGG GGCTCGTG CCGCGCACC chr5:89769775-89769855 39 8.09e-04 GTGGTGCACT GCCACGCG GTCGAACTGG chr8:61968443-61968523 51 8.09e-04 caccacgctt aacatgtg gctcccagca chr4:169930885-169930965 50 8.75e-04 CGCGGGTTTC TGCACGAG ACGCATTCTA chr2:98316705-98316785 32 8.75e-04 ccttgtgttt gcctcgtg ctgGTGCAGA chr17:42015577-42015657 59 8.75e-04 GCCATAGCGG GCCTCGTG TCGCTGCTGA chr20:56100074-56100154 65 8.75e-04 TGTGGGCTCT GCCTCGTG CACCGCGT chr15:41055728-41055808 12 8.75e-04 CTAGCTCCGA GCCTCGTG CCCCGGCCTC chr13:114881032-11488111 43 8.75e-04 CCCTCTGCAG GCCTCGTG TCCCCCTCGC chr11:124736414-12473649 3 9.45e-04 GG TGCACGCG GTCCCCATCC chr1:41274756-41274836 56 9.45e-04 aaacatgttc ttcacgtg gcctctctga chr8:145551121-145551201 49 9.45e-04 ACGCCTGCCT TGCACGCG ACTCCCAGGC chr19:41102828-41102908 14 9.45e-04 GGACCTCTGT TCCACGAG AAGGTTCACG chr6:34458975-34459055 68 9.45e-04 ctttctctag tgcacgcg ggccc chr8:27737164-27737244 53 9.97e-04 GTGGTACACT TCCACGCG GCCCTCGTGC chr6:109761531-109761611 65 9.97e-04 GCGCCTGCAG TCCACGCG GCCGAGAG chr19:843557-843637 65 1.03e-03 CTGCCTGCGG GACATGTG AGCGGCCG chr11:316301-316381 34 1.11e-03 CGCCGGAGGA CACACGTG CCCTACGCGG chr14:23355863-23355943 25 1.11e-03 ACTGCACCAC AACACGAG GGAGCTCTTC chr10:13459689-13459769 58 1.23e-03 GCGGGGGAGT AGCATGCG GCTGGTGGAA chrX:39966737-39966817 68 1.23e-03 TCCTGTCAGT CGCACATG GCCTT chr10:103986132-10398621 19 1.23e-03 TGCGCCGCCG CGCACATG CCTAGGTTCG chrX:106920081-106920161 44 1.34e-03 CGCATGGAGG CCCACATG CCTTACGCTC chr8:144823889-144823969 48 1.34e-03 CCTGGTCGCC ATCACATG GACACGCTAT chr7:107300355-107300435 29 1.40e-03 TGTCATGGTC TGCATATG CAAGGCAGGT chr4:110685703-110685783 48 1.40e-03 CAGCTGCTTT TGCATATG AACATTGTCT chr9:77642649-77642729 52 1.45e-03 GAGGTCAGAA GACACGAG GCTGTGCAGC chr15:65596240-65596320 33 1.45e-03 AGAATAAGGA GACACGAG GTCTGAAACT chr9:86535859-86535939 58 1.45e-03 GCCGTGCAGC GACACGAG ACGAACACAG chr18:158213-158293 32 1.62e-03 agcctcAGAC AGCAGGTG GGATACCAAG chr3:46792340-46792420 37 1.62e-03 CCGTGAGACG GCCATGAG GCTGGGGAGG chr13:110359980-11036006 30 1.62e-03 TGACTGTCAC AGCAGGTG AGCAGCAAAC chr7:117067334-117067414 41 1.89e-03 GGAGGCTGAA ACCAGGTG TGGTCAAGAC chr7:40174596-40174676 16 1.89e-03 CCATCTGAGA CGCACGCG ATGCTGGCGA chr6:35465590-35465670 33 1.89e-03 CCTCGTTCTC CGCACGCG CTGAGGAACC chr9:131190983-131191063 21 1.89e-03 AGTCAGTAGG GACTCGTG CTTGGGGTGT chrX:135180546-135180626 27 2.12e-03 CGCCTTCTCC AGCTCGAG CACCGCTCCC chr11:68025088-68025168 29 2.12e-03 TGCCCTGTCG AGCTCGAG GCCATGCCCT chr8:144301280-144301360 4 2.12e-03 ctt ggctcatg gcccttcctc chr7:22539726-22539806 68 2.12e-03 AGGTGCCGGC CCCACGCG GCGCC chr7:99775390-99775470 13 2.12e-03 AGAGCTTGAG GCCACACG AGGCTGTGGA chr5:8457424-8457504 5 2.30e-03 CAGG ATCTCGTG ATGGGGAAAA chr8:86090106-86090186 45 2.30e-03 AGAGCCCAGG ACCTCGAG CGCGCCCGCG chr1:212687614-212687694 27 2.30e-03 ATCTCGCTCA TGCATGCG ACACTGCTGC chr14:100069988-10007006 49 2.30e-03 GAAGCAGCAG AGCTCGCG CAGCTCCTGG chr19:49631175-49631255 44 2.30e-03 GAGCTGGAGC GCCTCATG GTCACGATGC chr22:38494033-38494113 71 2.45e-03 TCTCTTGCGC TCCATGCG CC chr8:72917464-72917544 64 2.45e-03 AGGGGGCCCC GGCAGGTG GCGAGCAGC chr9:124976040-124976120 46 2.82e-03 GGCAGCCTCA GCCTCGAG GAAAAGAGTC chr16:21531936-21532016 57 2.96e-03 GGAGACCCCG GCCTCGCG ACCTACCCCC chr16:29625207-29625287 54 2.96e-03 GGAGACCCCG GCCTCGCG ACCTACCCCC chr16:87903289-87903369 39 2.96e-03 GGAGACCCCG GCCTCGCG ACCTCCCCCC chr3:111805275-111805355 29 3.03e-03 GAGCTCTCGG TGCTCGAG CGGCAGCCAG chr1:203296873-203296953 26 3.68e-03 TCCTCCTCGC AGCTTGAG CGACTGCAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSCACGTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:23583739-23583819 2e-05 18_[+1]_54 chr12:122711062-12271114 2e-05 20_[+1]_52 chr12:4381750-4381830 2e-05 22_[+1]_50 chr16:85089694-85089774 2e-05 26_[+1]_46 chr11:108463669-10846374 2e-05 54_[+1]_18 chr17:6927550-6927630 2e-05 33_[+1]_39 chrX:101187193-101187273 2e-05 50_[+1]_22 chr16:31438850-31438930 2e-05 71_[+1]_1 chr8:98788654-98788734 2e-05 26_[+1]_46 chr19:41197203-41197283 2e-05 56_[+1]_16 chr19:3613109-3613189 2e-05 5_[+1]_67 chr1:109841392-109841472 2e-05 28_[+1]_44 chr15:76031365-76031445 2e-05 23_[+1]_49 chr1:112282232-112282312 2e-05 43_[+1]_29 chr5:442496-442576 2e-05 16_[+1]_56 chr12:109024854-10902493 2e-05 43_[+1]_29 chr4:1037867-1037947 3.9e-05 54_[+1]_18 chr7:10819526-10819606 3.9e-05 60_[+1]_12 chr19:18527228-18527308 3.9e-05 47_[+1]_25 chr2:30670655-30670735 3.9e-05 37_[+1]_35 chr15:36872206-36872286 3.9e-05 33_[+1]_39 chr1:29676794-29676874 7.2e-05 13_[+1]_59 chr20:34189480-34189560 7.2e-05 8_[+1]_64 chr12:3069244-3069324 7.2e-05 62_[+1]_10 chrX:39547850-39547930 7.2e-05 21_[+1]_51 chr3:135969931-135970011 7.2e-05 45_[+1]_27 chr13:26760528-26760608 7.2e-05 56_[+1]_16 chr2:239147750-239147830 7.2e-05 49_[+1]_23 chr16:11761767-11761847 7.2e-05 31_[+1]_41 chr5:176544059-176544139 0.0001 52_[+1]_20 chr19:18700390-18700470 0.0001 56_[+1]_16 chr5:172710878-172710958 0.0001 51_[+1]_21 chr15:83315979-83316059 0.0001 33_[+1]_39 chr1:235108292-235108372 0.0001 29_[+1]_43 chr7:44261044-44261124 0.0001 45_[+1]_27 chr17:56327218-56327298 0.0001 15_[+1]_57 chr17:77776523-77776603 0.0001 38_[+1]_34 chr1:21051715-21051795 0.0001 29_[+1]_43 chr2:242766099-242766179 0.0001 38_[+1]_34 chr8:9030535-9030615 0.0001 48_[+1]_24 chr5:14250328-14250408 0.0001 5_[+1]_67 chr1:153377301-153377381 0.0001 45_[+1]_27 chr17:36631049-36631129 0.0001 62_[+1]_10 chr4:6711101-6711181 0.00012 7_[+1]_65 chr8:103819775-103819855 0.00012 34_[+1]_38 chr15:34730087-34730167 0.00012 23_[+1]_49 chr11:14664645-14664725 0.00012 6_[+1]_66 chr8:30770565-30770645 0.00012 17_[+1]_55 chr20:31220260-31220340 0.00012 45_[+1]_27 chr1:896799-896879 0.00012 52_[+1]_20 chr11:72524848-72524928 0.00012 8_[+1]_64 chr16:88184876-88184956 0.00014 40_[+1]_32 chr17:38020392-38020472 0.00014 34_[+1]_38 chr21:47368507-47368587 0.00014 18_[+1]_54 chr8:12976402-12976482 0.00014 29_[+1]_43 chr5:38291625-38291705 0.00014 23_[+1]_49 chr7:913166-913246 0.00017 31_[+1]_41 chr7:50428323-50428403 0.00017 9_[+1]_63 chr17:79934592-79934672 0.00017 31_[+1]_41 chr1:158985361-158985441 0.00017 46_[+1]_26 chr16:30441877-30441957 0.00017 50_[+1]_22 chr2:61035730-61035810 0.00017 3_[+1]_69 chr8:61966085-61966165 0.00017 67_[+1]_5 chr16:28891515-28891595 0.00017 72_[+1] chr22:50541542-50541622 0.00017 40_[+1]_32 chr3:112738670-112738750 0.00017 23_[+1]_49 chr20:56115052-56115132 0.00017 65_[+1]_7 chr9:93956312-93956392 0.00019 30_[+1]_42 chr6:14804816-14804896 0.00019 31_[+1]_41 chr1:112163251-112163331 0.00019 42_[+1]_30 chr1:161409745-161409825 0.00019 19_[+1]_53 chr22:19879825-19879905 0.00019 33_[+1]_39 chr3:193788412-193788492 0.00019 30_[+1]_42 chr5:142599394-142599474 0.00019 23_[+1]_49 chr21:31034155-31034235 0.0002 53_[+1]_19 chr5:96519530-96519610 0.00024 13_[+1]_59 chr2:33824690-33824770 0.00024 65_[+1]_7 chr20:49092610-49092690 0.00024 24_[+1]_48 chr10:99473869-99473949 0.00033 11_[+1]_61 chr11:67044306-67044386 0.00033 47_[+1]_25 chr11:59570275-59570355 0.00033 1_[+1]_71 chr12:118783305-11878338 0.00033 22_[+1]_50 chr11:3425679-3425759 0.00033 33_[+1]_39 chr5:180479710-180479790 0.00033 16_[+1]_56 chr20:35203143-35203223 0.00033 36_[+1]_36 chr1:154972329-154972409 0.00033 28_[+1]_44 chr20:33762570-33762650 0.00033 27_[+1]_45 chr19:38943522-38943602 0.00033 67_[+1]_5 chr9:129921706-129921786 0.00033 53_[+1]_19 chr1:2107279-2107359 0.00033 29_[+1]_43 chr1:32666344-32666424 0.00033 61_[+1]_11 chr18:9321108-9321188 0.00033 29_[+1]_43 chr5:43042812-43042892 0.00045 43_[+1]_29 chr11:119210363-11921044 0.00045 23_[+1]_49 chr11:18656412-18656492 0.00045 9_[+1]_63 chr16:82204146-82204226 0.00045 52_[+1]_20 chr6:166726860-166726940 0.00045 39_[+1]_33 chr1:53926209-53926289 0.00045 13_[+1]_59 chr17:79197206-79197286 0.00045 66_[+1]_6 chr7:92533811-92533891 0.00045 20_[+1]_52 chr10:82529547-82529627 0.00045 14_[+1]_58 chr11:65879723-65879803 0.00045 46_[+1]_26 chr1:182573671-182573751 0.00045 6_[+1]_66 chr13:103426276-10342635 0.00045 18_[+1]_54 chr17:80696252-80696332 0.00045 26_[+1]_46 chr9:138800197-138800277 0.00045 8_[+1]_64 chr11:66336125-66336205 0.00045 67_[+1]_5 chr16:2389599-2389679 0.00045 3_[+1]_69 chr9:117266780-117266860 0.00045 59_[+1]_13 chr1:43638446-43638526 0.00045 24_[+1]_48 chr7:100951918-100951998 0.00045 41_[+1]_31 chr7:22162910-22162990 0.00045 13_[+1]_59 chr8:142401560-142401640 0.00052 64_[+1]_8 chr1:65785685-65785765 0.00052 42_[+1]_30 chrX:129402980-129403060 0.00056 17_[+1]_55 chr5:132201864-132201944 0.00056 13_[+1]_59 chr3:15157888-15157968 0.00056 22_[+1]_50 chr3:194991340-194991420 0.00056 40_[+1]_32 chr18:20047893-20047973 0.00056 56_[+1]_16 chr7:106750497-106750577 0.00056 38_[+1]_34 chr11:2920104-2920184 0.00056 48_[+1]_24 chr6:13874161-13874241 0.00061 65_[+1]_7 chr10:124713986-12471406 0.00061 8_[+1]_64 chr2:182757037-182757117 0.00071 38_[+1]_34 chr17:74382105-74382185 0.00071 56_[+1]_16 chr4:90032304-90032384 0.00071 37_[+1]_35 chr19:40330709-40330789 0.00071 69_[+1]_3 chr1:93250940-93251020 0.00071 64_[+1]_8 chr5:176794503-176794583 0.00071 43_[+1]_29 chr3:13460585-13460665 0.00071 28_[+1]_44 chr10:23003830-23003910 0.00071 64_[+1]_8 chr8:2590235-2590315 0.00071 29_[+1]_43 chr4:2470214-2470294 0.00071 41_[+1]_31 chr16:3355238-3355318 0.00081 69_[+1]_3 chr4:53728661-53728741 0.00081 28_[+1]_44 chr8:146052057-146052137 0.00081 53_[+1]_19 chr17:61926853-61926933 0.00081 52_[+1]_20 chr10:49514372-49514452 0.00081 70_[+1]_2 chr22:43253491-43253571 0.00081 21_[+1]_51 chr19:17953249-17953329 0.00081 62_[+1]_10 chr11:64739471-64739551 0.00081 63_[+1]_9 chr5:89769775-89769855 0.00081 38_[+1]_34 chr8:61968443-61968523 0.00081 50_[+1]_22 chr4:169930885-169930965 0.00087 49_[+1]_23 chr2:98316705-98316785 0.00087 31_[+1]_41 chr17:42015577-42015657 0.00087 58_[+1]_14 chr20:56100074-56100154 0.00087 64_[+1]_8 chr15:41055728-41055808 0.00087 11_[+1]_61 chr13:114881032-11488111 0.00087 42_[+1]_30 chr11:124736414-12473649 0.00095 2_[+1]_70 chr1:41274756-41274836 0.00095 55_[+1]_17 chr8:145551121-145551201 0.00095 48_[+1]_24 chr19:41102828-41102908 0.00095 13_[+1]_59 chr6:34458975-34459055 0.00095 67_[+1]_5 chr8:27737164-27737244 0.001 52_[+1]_20 chr6:109761531-109761611 0.001 64_[+1]_8 chr19:843557-843637 0.001 64_[+1]_8 chr11:316301-316381 0.0011 33_[+1]_39 chr14:23355863-23355943 0.0011 24_[+1]_48 chr10:13459689-13459769 0.0012 57_[+1]_15 chrX:39966737-39966817 0.0012 67_[+1]_5 chr10:103986132-10398621 0.0012 18_[+1]_54 chrX:106920081-106920161 0.0013 43_[+1]_29 chr8:144823889-144823969 0.0013 47_[+1]_25 chr7:107300355-107300435 0.0014 28_[+1]_44 chr4:110685703-110685783 0.0014 47_[+1]_25 chr9:77642649-77642729 0.0015 51_[+1]_21 chr15:65596240-65596320 0.0015 32_[+1]_40 chr9:86535859-86535939 0.0015 57_[+1]_15 chr18:158213-158293 0.0016 31_[+1]_41 chr3:46792340-46792420 0.0016 36_[+1]_36 chr13:110359980-11036006 0.0016 29_[+1]_43 chr7:117067334-117067414 0.0019 40_[+1]_32 chr7:40174596-40174676 0.0019 15_[+1]_57 chr6:35465590-35465670 0.0019 32_[+1]_40 chr9:131190983-131191063 0.0019 20_[+1]_52 chrX:135180546-135180626 0.0021 26_[+1]_46 chr11:68025088-68025168 0.0021 28_[+1]_44 chr8:144301280-144301360 0.0021 3_[+1]_69 chr7:22539726-22539806 0.0021 67_[+1]_5 chr7:99775390-99775470 0.0021 12_[+1]_60 chr5:8457424-8457504 0.0023 4_[+1]_68 chr8:86090106-86090186 0.0023 44_[+1]_28 chr1:212687614-212687694 0.0023 26_[+1]_46 chr14:100069988-10007006 0.0023 48_[+1]_24 chr19:49631175-49631255 0.0023 43_[+1]_29 chr22:38494033-38494113 0.0024 70_[+1]_2 chr8:72917464-72917544 0.0024 63_[+1]_9 chr9:124976040-124976120 0.0028 45_[+1]_27 chr16:21531936-21532016 0.003 56_[+1]_16 chr16:29625207-29625287 0.003 53_[+1]_19 chr16:87903289-87903369 0.003 38_[+1]_34 chr3:111805275-111805355 0.003 28_[+1]_44 chr1:203296873-203296953 0.0037 25_[+1]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSCACGTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RSCACGTG width=8 seqs=194 chr2:23583739-23583819 ( 19) AGCACGTG 1 chr12:122711062-12271114 ( 21) AGCACGTG 1 chr12:4381750-4381830 ( 23) AGCACGTG 1 chr16:85089694-85089774 ( 27) AGCACGTG 1 chr11:108463669-10846374 ( 55) AGCACGTG 1 chr17:6927550-6927630 ( 34) AGCACGTG 1 chrX:101187193-101187273 ( 51) AGCACGTG 1 chr16:31438850-31438930 ( 72) AGCACGTG 1 chr8:98788654-98788734 ( 27) AGCACGTG 1 chr19:41197203-41197283 ( 57) AGCACGTG 1 chr19:3613109-3613189 ( 6) AGCACGTG 1 chr1:109841392-109841472 ( 29) AGCACGTG 1 chr15:76031365-76031445 ( 24) AGCACGTG 1 chr1:112282232-112282312 ( 44) AGCACGTG 1 chr5:442496-442576 ( 17) AGCACGTG 1 chr12:109024854-10902493 ( 44) AGCACGTG 1 chr4:1037867-1037947 ( 55) ACCACGTG 1 chr7:10819526-10819606 ( 61) ACCACGTG 1 chr19:18527228-18527308 ( 48) ACCACGTG 1 chr2:30670655-30670735 ( 38) ACCACGTG 1 chr15:36872206-36872286 ( 34) ACCACGTG 1 chr1:29676794-29676874 ( 14) GGCACGTG 1 chr20:34189480-34189560 ( 9) GGCACGTG 1 chr12:3069244-3069324 ( 63) GGCACGTG 1 chrX:39547850-39547930 ( 22) GGCACGTG 1 chr3:135969931-135970011 ( 46) GGCACGTG 1 chr13:26760528-26760608 ( 57) GGCACGTG 1 chr2:239147750-239147830 ( 50) GGCACGTG 1 chr16:11761767-11761847 ( 32) GGCACGTG 1 chr5:176544059-176544139 ( 53) GCCACGTG 1 chr19:18700390-18700470 ( 57) GCCACGTG 1 chr5:172710878-172710958 ( 52) GCCACGTG 1 chr15:83315979-83316059 ( 34) GCCACGTG 1 chr1:235108292-235108372 ( 30) GCCACGTG 1 chr7:44261044-44261124 ( 46) GCCACGTG 1 chr17:56327218-56327298 ( 16) GCCACGTG 1 chr17:77776523-77776603 ( 39) GCCACGTG 1 chr1:21051715-21051795 ( 30) GCCACGTG 1 chr2:242766099-242766179 ( 39) GCCACGTG 1 chr8:9030535-9030615 ( 49) GCCACGTG 1 chr5:14250328-14250408 ( 6) GCCACGTG 1 chr1:153377301-153377381 ( 46) GCCACGTG 1 chr17:36631049-36631129 ( 63) GCCACGTG 1 chr4:6711101-6711181 ( 8) TGCACGTG 1 chr8:103819775-103819855 ( 35) TGCACGTG 1 chr15:34730087-34730167 ( 24) TGCACGTG 1 chr11:14664645-14664725 ( 7) TGCACGTG 1 chr8:30770565-30770645 ( 18) TGCACGTG 1 chr20:31220260-31220340 ( 46) TGCACGTG 1 chr1:896799-896879 ( 53) TGCACGTG 1 chr11:72524848-72524928 ( 9) TGCACGTG 1 chr16:88184876-88184956 ( 41) TCCACGTG 1 chr17:38020392-38020472 ( 35) TCCACGTG 1 chr21:47368507-47368587 ( 19) TCCACGTG 1 chr8:12976402-12976482 ( 30) TCCACGTG 1 chr5:38291625-38291705 ( 24) TCCACGTG 1 chr7:913166-913246 ( 32) AACACGTG 1 chr7:50428323-50428403 ( 10) AACACGTG 1 chr17:79934592-79934672 ( 32) AACACGTG 1 chr1:158985361-158985441 ( 47) AGCATGTG 1 chr16:30441877-30441957 ( 51) AACACGTG 1 chr2:61035730-61035810 ( 4) AGCATGTG 1 chr8:61966085-61966165 ( 68) AGCATGTG 1 chr16:28891515-28891595 ( 73) AGCATGTG 1 chr22:50541542-50541622 ( 41) AACACGTG 1 chr3:112738670-112738750 ( 24) AACACGTG 1 chr20:56115052-56115132 ( 66) AGCATGTG 1 chr9:93956312-93956392 ( 31) AGCACATG 1 chr6:14804816-14804896 ( 32) AGCACATG 1 chr1:112163251-112163331 ( 43) ACCATGTG 1 chr1:161409745-161409825 ( 20) AGCACATG 1 chr22:19879825-19879905 ( 34) AGCACATG 1 chr3:193788412-193788492 ( 31) AGCACATG 1 chr5:142599394-142599474 ( 24) AGCACATG 1 chr21:31034155-31034235 ( 54) ACCACATG 1 chr5:96519530-96519610 ( 14) GACACGTG 1 chr2:33824690-33824770 ( 66) GGCATGTG 1 chr20:49092610-49092690 ( 25) GGCATGTG 1 chr10:99473869-99473949 ( 12) AGCACGAG 1 chr11:67044306-67044386 ( 48) GCCATGTG 1 chr11:59570275-59570355 ( 2) GCCATGTG 1 chr12:118783305-11878338 ( 23) GCCATGTG 1 chr11:3425679-3425759 ( 34) GCCATGTG 1 chr5:180479710-180479790 ( 17) CGCACGTG 1 chr20:35203143-35203223 ( 37) GCCATGTG 1 chr1:154972329-154972409 ( 29) CGCACGTG 1 chr20:33762570-33762650 ( 28) CGCACGTG 1 chr19:38943522-38943602 ( 68) AGCACGAG 1 chr9:129921706-129921786 ( 54) GCCATGTG 1 chr1:2107279-2107359 ( 30) GGCACATG 1 chr1:32666344-32666424 ( 62) GGCACATG 1 chr18:9321108-9321188 ( 30) GCCATGTG 1 chr5:43042812-43042892 ( 44) CCCACGTG 1 chr11:119210363-11921044 ( 24) AGCACGCG 1 chr11:18656412-18656492 ( 10) GCCACATG 1 chr16:82204146-82204226 ( 53) CCCACGTG 1 chr6:166726860-166726940 ( 40) AGCACGCG 1 chr1:53926209-53926289 ( 14) CCCACGTG 1 chr17:79197206-79197286 ( 67) CCCACGTG 1 chr7:92533811-92533891 ( 21) GCCACATG 1 chr10:82529547-82529627 ( 15) GCCACATG 1 chr11:65879723-65879803 ( 47) GCCACATG 1 chr1:182573671-182573751 ( 7) AGCACGCG 1 chr13:103426276-10342635 ( 19) AGCACGCG 1 chr17:80696252-80696332 ( 27) CCCACGTG 1 chr9:138800197-138800277 ( 9) CCCACGTG 1 chr11:66336125-66336205 ( 68) ATCACGTG 1 chr16:2389599-2389679 ( 4) CCCACGTG 1 chr9:117266780-117266860 ( 60) AGCACGCG 1 chr1:43638446-43638526 ( 25) CCCACGTG 1 chr7:100951918-100951998 ( 42) CCCACGTG 1 chr7:22162910-22162990 ( 14) ACCACGAG 1 chr8:142401560-142401640 ( 65) ACCACGCG 1 chr1:65785685-65785765 ( 43) TGCATGTG 1 chrX:129402980-129403060 ( 18) TGCACATG 1 chr5:132201864-132201944 ( 14) ACCTCGTG 1 chr3:15157888-15157968 ( 23) TCCATGTG 1 chr3:194991340-194991420 ( 41) ACCTCGTG 1 chr18:20047893-20047973 ( 57) TCCATGTG 1 chr7:106750497-106750577 ( 39) TCCATGTG 1 chr11:2920104-2920184 ( 49) TGCACATG 1 chr6:13874161-13874241 ( 66) GGCACGAG 1 chr10:124713986-12471406 ( 9) GGCACGAG 1 chr2:182757037-182757117 ( 39) GCCACGAG 1 chr17:74382105-74382185 ( 57) GTCACGTG 1 chr4:90032304-90032384 ( 38) GGCACGCG 1 chr19:40330709-40330789 ( 70) GTCACGTG 1 chr1:93250940-93251020 ( 65) GGCACGCG 1 chr5:176794503-176794583 ( 44) GCCACGAG 1 chr3:13460585-13460665 ( 29) GTCACGTG 1 chr10:23003830-23003910 ( 65) GCCACGAG 1 chr8:2590235-2590315 ( 30) GTCACGTG 1 chr4:2470214-2470294 ( 42) GGCACGCG 1 chr16:3355238-3355318 ( 70) GCCACGCG 1 chr4:53728661-53728741 ( 29) AACATGTG 1 chr8:146052057-146052137 ( 54) GCCACGCG 1 chr17:61926853-61926933 ( 53) GCCACGCG 1 chr10:49514372-49514452 ( 71) GCCACGCG 1 chr22:43253491-43253571 ( 22) GCCACGCG 1 chr19:17953249-17953329 ( 63) GCCACGCG 1 chr11:64739471-64739551 ( 64) GGCTCGTG 1 chr5:89769775-89769855 ( 39) GCCACGCG 1 chr8:61968443-61968523 ( 51) AACATGTG 1 chr4:169930885-169930965 ( 50) TGCACGAG 1 chr2:98316705-98316785 ( 32) GCCTCGTG 1 chr17:42015577-42015657 ( 59) GCCTCGTG 1 chr20:56100074-56100154 ( 65) GCCTCGTG 1 chr15:41055728-41055808 ( 12) GCCTCGTG 1 chr13:114881032-11488111 ( 43) GCCTCGTG 1 chr11:124736414-12473649 ( 3) TGCACGCG 1 chr1:41274756-41274836 ( 56) TTCACGTG 1 chr8:145551121-145551201 ( 49) TGCACGCG 1 chr19:41102828-41102908 ( 14) TCCACGAG 1 chr6:34458975-34459055 ( 68) TGCACGCG 1 chr8:27737164-27737244 ( 53) TCCACGCG 1 chr6:109761531-109761611 ( 65) TCCACGCG 1 chr19:843557-843637 ( 65) GACATGTG 1 chr11:316301-316381 ( 34) CACACGTG 1 chr14:23355863-23355943 ( 25) AACACGAG 1 chr10:13459689-13459769 ( 58) AGCATGCG 1 chrX:39966737-39966817 ( 68) CGCACATG 1 chr10:103986132-10398621 ( 19) CGCACATG 1 chrX:106920081-106920161 ( 44) CCCACATG 1 chr8:144823889-144823969 ( 48) ATCACATG 1 chr7:107300355-107300435 ( 29) TGCATATG 1 chr4:110685703-110685783 ( 48) TGCATATG 1 chr9:77642649-77642729 ( 52) GACACGAG 1 chr15:65596240-65596320 ( 33) GACACGAG 1 chr9:86535859-86535939 ( 58) GACACGAG 1 chr18:158213-158293 ( 32) AGCAGGTG 1 chr3:46792340-46792420 ( 37) GCCATGAG 1 chr13:110359980-11036006 ( 30) AGCAGGTG 1 chr7:117067334-117067414 ( 41) ACCAGGTG 1 chr7:40174596-40174676 ( 16) CGCACGCG 1 chr6:35465590-35465670 ( 33) CGCACGCG 1 chr9:131190983-131191063 ( 21) GACTCGTG 1 chrX:135180546-135180626 ( 27) AGCTCGAG 1 chr11:68025088-68025168 ( 29) AGCTCGAG 1 chr8:144301280-144301360 ( 4) GGCTCATG 1 chr7:22539726-22539806 ( 68) CCCACGCG 1 chr7:99775390-99775470 ( 13) GCCACACG 1 chr5:8457424-8457504 ( 5) ATCTCGTG 1 chr8:86090106-86090186 ( 45) ACCTCGAG 1 chr1:212687614-212687694 ( 27) TGCATGCG 1 chr14:100069988-10007006 ( 49) AGCTCGCG 1 chr19:49631175-49631255 ( 44) GCCTCATG 1 chr22:38494033-38494113 ( 71) TCCATGCG 1 chr8:72917464-72917544 ( 64) GGCAGGTG 1 chr9:124976040-124976120 ( 46) GCCTCGAG 1 chr16:21531936-21532016 ( 57) GCCTCGCG 1 chr16:29625207-29625287 ( 54) GCCTCGCG 1 chr16:87903289-87903369 ( 39) GCCTCGCG 1 chr3:111805275-111805355 ( 29) TGCTCGAG 1 chr1:203296873-203296953 ( 26) AGCTTGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSCACGTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.65662 E= 2.8e-093 86 -166 34 -19 -118 46 52 -219 -1424 169 -1424 -1424 224 -1424 -1424 -73 -1424 142 -393 -33 -60 -1424 148 -1424 -79 -91 -1424 195 -1424 -1424 167 -1424 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSCACGTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 194 E= 2.8e-093 0.340206 0.097938 0.396907 0.164948 0.082474 0.427835 0.448454 0.041237 0.000000 1.000000 0.000000 0.000000 0.886598 0.000000 0.000000 0.113402 0.000000 0.829897 0.020619 0.149485 0.123711 0.000000 0.876289 0.000000 0.108247 0.164948 0.000000 0.726804 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSCACGTG MEME-1 regular expression -------------------------------------------------------------------------------- [GA][GC]CACGTG -------------------------------------------------------------------------------- Time 5.03 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTTTDAA MEME-2 width = 8 sites = 13 llr = 128 E-value = 1.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTTDAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :1:::38a pos.-specific C :12:::2: probability G 2::::3:: matrix T 888aa4:: bits 2.4 ** * 2.2 ** * 1.9 ** * 1.7 **** ** Relative 1.4 ***** ** Entropy 1.2 ***** ** (14.2 bits) 1.0 ***** ** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTTTTAA consensus G A sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTDAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr15:34730087-34730167 62 1.54e-06 gacaaAATTT TTTTTTAA AAAACCCTGA chr21:38361908-38361988 31 1.54e-06 CCAGCTTCCG TTTTTTAA TGTTATTATG chrX:39966737-39966817 5 1.54e-06 GCAA TTTTTTAA GCCTGCAATT chr11:59570275-59570355 36 5.66e-06 AAAAGTGCAA TTTTTGAA CATGGTTTAA chr7:913166-913246 57 8.24e-06 GACACTCCTT GTTTTTAA CGGGAAGCTC chr13:52733824-52733904 11 1.08e-05 CGAAGAGCAC GTTTTAAA GCTGTTGTTC chr11:67044306-67044386 35 2.68e-05 gccttgttcc tttttaca gccgagccat chr9:124976040-124976120 5 2.68e-05 GGCA GTTTTGAA ACCACACCTG chr8:98788654-98788734 44 2.68e-05 GTTTCCTTTC TTCTTAAA GCCCGTGGGC chr19:18527228-18527308 72 2.68e-05 CCCATGgagc ttcttaaa a chr8:144823889-144823969 65 3.94e-05 GGACACGCTA TTTTTGCA CTCGAGGC chr17:38115408-38115488 43 3.94e-05 CCTTATTGTC TCTTTTAA TTGACCTGAA chr7:158798511-158798591 50 4.45e-05 ACAAAAACAG TATTTGAA AATGTGCACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTDAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:34730087-34730167 1.5e-06 61_[+2]_11 chr21:38361908-38361988 1.5e-06 30_[+2]_42 chrX:39966737-39966817 1.5e-06 4_[+2]_68 chr11:59570275-59570355 5.7e-06 35_[+2]_37 chr7:913166-913246 8.2e-06 56_[+2]_16 chr13:52733824-52733904 1.1e-05 10_[+2]_62 chr11:67044306-67044386 2.7e-05 34_[+2]_38 chr9:124976040-124976120 2.7e-05 4_[+2]_68 chr8:98788654-98788734 2.7e-05 43_[+2]_29 chr19:18527228-18527308 2.7e-05 71_[+2]_1 chr8:144823889-144823969 3.9e-05 64_[+2]_8 chr17:38115408-38115488 3.9e-05 42_[+2]_30 chr7:158798511-158798591 4.5e-05 49_[+2]_23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTDAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTTDAA width=8 seqs=13 chr15:34730087-34730167 ( 62) TTTTTTAA 1 chr21:38361908-38361988 ( 31) TTTTTTAA 1 chrX:39966737-39966817 ( 5) TTTTTTAA 1 chr11:59570275-59570355 ( 36) TTTTTGAA 1 chr7:913166-913246 ( 57) GTTTTTAA 1 chr13:52733824-52733904 ( 11) GTTTTAAA 1 chr11:67044306-67044386 ( 35) TTTTTACA 1 chr9:124976040-124976120 ( 5) GTTTTGAA 1 chr8:98788654-98788734 ( 44) TTCTTAAA 1 chr19:18527228-18527308 ( 72) TTCTTAAA 1 chr8:144823889-144823969 ( 65) TTTTTGCA 1 chr17:38115408-38115488 ( 43) TCTTTTAA 1 chr7:158798511-158798591 ( 50) TATTTGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTDAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.6191 E= 1.7e+003 -1035 -1035 -44 203 -128 -201 -1035 217 -1035 -101 -1035 217 -1035 -1035 -1035 241 -1035 -1035 -1035 241 72 -1035 -3 103 217 -101 -1035 -1035 242 -1035 -1035 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTDAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 1.7e+003 0.000000 0.000000 0.230769 0.769231 0.076923 0.076923 0.000000 0.846154 0.000000 0.153846 0.000000 0.846154 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.307692 0.000000 0.307692 0.384615 0.846154 0.153846 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTDAA MEME-2 regular expression -------------------------------------------------------------------------------- [TG]TTTT[TAG]AA -------------------------------------------------------------------------------- Time 8.47 secs. ******************************************************************************** ******************************************************************************** MOTIF AAATWSAA MEME-3 width = 8 sites = 3 llr = 35 E-value = 9.8e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAATWSAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A aaa:3:aa pos.-specific C :::::7:: probability G :::::3:: matrix T :::a7::: bits 2.4 **** ** 2.2 **** ** 1.9 **** ** 1.7 **** ** Relative 1.4 ***** ** Entropy 1.2 ***** ** (16.7 bits) 1.0 ***** ** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAATTCAA consensus AG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATWSAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:161126473-161126553 73 2.51e-06 GAGGAACCCC AAATTCAA chr20:49092610-49092690 17 2.51e-06 TAGCAGGTCT AAATTCAA GGCATGTGCC chr5:38291625-38291705 71 1.01e-05 TTCCCATTAG AAATAGAA GT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATWSAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:161126473-161126553 2.5e-06 72_[+3] chr20:49092610-49092690 2.5e-06 16_[+3]_56 chr5:38291625-38291705 1e-05 70_[+3]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATWSAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAATWSAA width=8 seqs=3 chr2:161126473-161126553 ( 73) AAATTCAA 1 chr20:49092610-49092690 ( 17) AAATTCAA 1 chr5:38291625-38291705 ( 71) AAATAGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATWSAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.2293 E= 9.8e+004 241 -823 -823 -823 241 -823 -823 -823 241 -823 -823 -823 -823 -823 -823 240 83 -823 -823 182 -823 110 9 -823 241 -823 -823 -823 241 -823 -823 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATWSAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 9.8e+004 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.333333 0.000000 0.000000 0.666667 0.000000 0.666667 0.333333 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATWSAA MEME-3 regular expression -------------------------------------------------------------------------------- AAAT[TA][CG]AA -------------------------------------------------------------------------------- Time 11.91 secs. ******************************************************************************** ******************************************************************************** MOTIF TTCAAAAG MEME-4 width = 8 sites = 2 llr = 25 E-value = 2.5e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTCAAAAG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::aaaa: pos.-specific C ::a::::: probability G :::::::a matrix T aa:::::: bits 2.4 ** **** 2.2 ** **** 1.9 ** **** 1.7 ******** Relative 1.4 ******** Entropy 1.2 ******** (17.8 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTCAAAAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCAAAAG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr8:103819775-103819855 9 4.21e-06 CCATGGCA TTCAAAAG AGGTGGGAGG chr11:59570275-59570355 23 4.21e-06 GATCAGATGG TTCAAAAG TGCAATTTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCAAAAG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:103819775-103819855 4.2e-06 8_[+4]_64 chr11:59570275-59570355 4.2e-06 22_[+4]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCAAAAG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTCAAAAG width=8 seqs=2 chr8:103819775-103819855 ( 9) TTCAAAAG 1 chr11:59570275-59570355 ( 23) TTCAAAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCAAAAG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.3895 E= 2.5e+005 -765 -765 -765 240 -765 -765 -765 240 -765 168 -765 -765 241 -765 -765 -765 241 -765 -765 -765 241 -765 -765 -765 241 -765 -765 -765 -765 -765 167 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCAAAAG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.5e+005 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCAAAAG MEME-4 regular expression -------------------------------------------------------------------------------- TTCAAAAG -------------------------------------------------------------------------------- Time 15.32 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTTKTTT MEME-5 width = 8 sites = 8 llr = 81 E-value = 5.0e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTKTTT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::1:: pos.-specific C ::::::3: probability G ::316::: matrix T aa89498a bits 2.4 ** * 2.2 ** * 1.9 ** * * 1.7 ** * * * Relative 1.4 **** *** Entropy 1.2 **** *** (14.7 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTTGTTT consensus G T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTKTTT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr21:38361908-38361988 57 4.17e-06 TGTATCAGTC TTTTTTTT CCGGGCACTT chr1:226814422-226814502 30 4.17e-06 AAATTGGGCA TTTTTTTT TCCATTGAAA chr16:82204146-82204226 61 1.80e-05 TACCCACGTG TTTTGTCT TCATAACGTG chr2:98316705-98316785 24 1.80e-05 atctgtggcc ttgtgttt gcctcgtgct chr8:98788654-98788734 63 1.80e-05 CCCGTGGGCT TTGTGTTT CGACGGCTGC chr1:12123384-12123464 5 1.80e-05 CCCC TTTTTTCT TCGCTGCTTG chr17:77776523-77776603 4 2.21e-05 CAG TTTTGATT CATTCCTTGG chr18:8660059-8660139 62 2.91e-05 CGGCCTGAGG TTTGGTTT TAGCACGCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTKTTT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr21:38361908-38361988 4.2e-06 56_[+5]_16 chr1:226814422-226814502 4.2e-06 29_[+5]_43 chr16:82204146-82204226 1.8e-05 60_[+5]_12 chr2:98316705-98316785 1.8e-05 23_[+5]_49 chr8:98788654-98788734 1.8e-05 62_[+5]_10 chr1:12123384-12123464 1.8e-05 4_[+5]_68 chr17:77776523-77776603 2.2e-05 3_[+5]_69 chr18:8660059-8660139 2.9e-05 61_[+5]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTKTTT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTKTTT width=8 seqs=8 chr21:38361908-38361988 ( 57) TTTTTTTT 1 chr1:226814422-226814502 ( 30) TTTTTTTT 1 chr16:82204146-82204226 ( 61) TTTTGTCT 1 chr2:98316705-98316785 ( 24) TTGTGTTT 1 chr8:98788654-98788734 ( 63) TTGTGTTT 1 chr1:12123384-12123464 ( 5) TTTTTTCT 1 chr17:77776523-77776603 ( 4) TTTTGATT 1 chr18:8660059-8660139 ( 62) TTTGGTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTKTTT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.4773 E= 5.0e+005 -965 -965 -965 241 -965 -965 -965 241 -965 -965 -33 199 -965 -965 -132 221 -965 -965 99 99 -58 -965 -965 221 -965 -31 -965 199 -965 -965 -965 241 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTKTTT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 5.0e+005 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.125000 0.875000 0.000000 0.000000 0.625000 0.375000 0.125000 0.000000 0.000000 0.875000 0.000000 0.250000 0.000000 0.750000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTKTTT MEME-5 regular expression -------------------------------------------------------------------------------- TT[TG]T[GT]T[TC]T -------------------------------------------------------------------------------- Time 18.74 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr20:56115052-56115132 7.20e-02 80 chr8:61968443-61968523 3.03e-02 80 chr13:52733824-52733904 2.05e-03 10_[+2(1.08e-05)]_62 chr17:36631049-36631129 3.82e-01 80 chr12:109024854-10902493 3.99e-03 43_[+1(1.96e-05)]_29 chr15:36872206-36872286 2.00e-01 33_[+1(3.89e-05)]_39 chr4:2470214-2470294 3.18e-01 80 chr8:2590235-2590315 9.78e-03 9_[+3(8.96e-05)]_63 chr22:29076125-29076205 9.87e-01 80 chr21:31034155-31034235 3.47e-02 80 chr21:38729171-38729251 2.47e-03 80 chr3:112738670-112738750 5.82e-02 80 chr4:110685703-110685783 4.68e-02 80 chr1:153377301-153377381 3.34e-02 80 chr10:103986132-10398621 5.46e-01 80 chr5:14250328-14250408 1.35e-01 80 chr9:99015578-99015658 4.66e-02 80 chr7:22162910-22162990 1.17e-01 80 chr5:442496-442576 1.85e-02 16_[+1(1.96e-05)]_56 chr5:89769775-89769855 7.21e-01 80 chr22:43547876-43547956 9.74e-01 80 chr7:100951918-100951998 3.53e-01 80 chr1:43638446-43638526 7.77e-03 11_[+5(7.74e-05)]_61 chr9:117266780-117266860 6.43e-01 80 chr18:9321108-9321188 1.08e-01 80 chr6:34458975-34459055 6.53e-03 80 chr19:41102828-41102908 5.80e-01 80 chr3:37901872-37901952 5.33e-01 80 chr22:50541542-50541622 1.83e-01 80 chr7:99775390-99775470 1.30e-01 80 chr2:30670655-30670735 1.57e-02 37_[+1(3.89e-05)]_35 chr16:11761767-11761847 3.67e-01 31_[+1(7.17e-05)]_41 chr16:87903289-87903369 9.35e-01 80 chr2:239147750-239147830 8.18e-02 49_[+1(7.17e-05)]_23 chr17:38115408-38115488 3.84e-03 42_[+2(3.94e-05)]_30 chr16:28891515-28891595 3.62e-01 80 chr5:142599394-142599474 1.78e-02 80 chr7:22539726-22539806 8.48e-01 80 chr16:2389599-2389679 3.52e-01 80 chr11:66336125-66336205 5.20e-01 80 chr1:203296873-203296953 4.83e-01 80 chr11:64739471-64739551 1.45e-01 80 chr8:9030535-9030615 1.32e-01 80 chr11:2920104-2920184 2.81e-01 80 chrX:39966737-39966817 8.23e-04 4_[+2(1.54e-06)]_68 chr11:72524848-72524928 1.76e-01 80 chr16:29625207-29625287 6.78e-01 80 chr3:193788412-193788492 8.90e-03 80 chr1:32666344-32666424 1.69e-01 80 chr7:106750497-106750577 2.86e-01 80 chr9:86535859-86535939 4.02e-01 80 chr4:13546823-13546903 8.49e-01 80 chr6:109761531-109761611 8.18e-01 80 chr2:242766099-242766179 3.31e-02 80 chr1:2107279-2107359 9.49e-02 80 chr17:62961986-62962066 9.97e-01 80 chr8:144951147-144951227 7.78e-01 80 chr1:21051715-21051795 9.34e-02 80 chr8:145551121-145551201 3.85e-02 80 chr3:56717415-56717495 9.99e-01 80 chr8:144823889-144823969 1.43e-02 64_[+2(3.94e-05)]_8 chr17:77776523-77776603 1.02e-03 3_[+5(2.21e-05)]_69 chr12:8179678-8179758 6.60e-01 80 chr9:129921706-129921786 1.54e-02 80 chr9:138800197-138800277 3.58e-01 80 chr22:19879825-19879905 8.34e-02 80 chr11:66326699-66326779 7.38e-01 80 chr5:38291625-38291705 6.43e-04 70_[+3(1.01e-05)]_2 chr10:23003830-23003910 7.08e-01 80 chr19:18527228-18527308 1.64e-03 47_[+1(3.89e-05)]_16_[+2(2.68e-05)]_\ 1 chr8:12976402-12976482 4.39e-02 80 chr17:80696252-80696332 1.50e-02 18_[+5(9.58e-05)]_54 chr18:20047893-20047973 2.84e-02 80 chr3:13460585-13460665 1.30e-02 80 chr1:896799-896879 2.22e-01 80 chr9:131190983-131191063 3.28e-01 80 chr19:10589876-10589956 9.99e-01 80 chr8:72917464-72917544 4.39e-01 80 chr13:103426276-10342635 1.80e-01 80 chr5:176794503-176794583 5.15e-01 80 chr1:112282232-112282312 8.44e-03 43_[+1(1.96e-05)]_29 chr1:182573671-182573751 2.27e-01 80 chr19:843557-843637 7.45e-01 80 chr8:61966085-61966165 6.33e-04 14_[+3(8.96e-05)]_58 chr13:114881032-11488111 5.53e-01 80 chr20:31220260-31220340 2.61e-02 80 chr3:185543763-185543843 9.88e-01 80 chr1:41274756-41274836 5.82e-03 80 chr17:47755682-47755762 4.69e-01 80 chr1:12123384-12123464 7.37e-03 4_[+5(1.80e-05)]_68 chr3:72204884-72204964 8.07e-01 80 chr6:35465590-35465670 8.82e-01 80 chr15:76031365-76031445 1.43e-01 23_[+1(1.96e-05)]_49 chr11:65879723-65879803 1.12e-01 80 chr1:109841392-109841472 1.41e-01 28_[+1(1.96e-05)]_44 chr1:2161826-2161906 4.85e-01 80 chr1:93250940-93251020 5.31e-02 80 chr19:3613109-3613189 2.01e-01 5_[+1(1.96e-05)]_67 chr19:41197203-41197283 8.59e-02 56_[+1(1.96e-05)]_16 chr1:205290655-205290735 9.09e-01 80 chr20:49092610-49092690 2.62e-05 16_[+3(2.51e-06)]_56 chr10:82529547-82529627 7.19e-04 21_[+2(5.73e-05)]_51 chr8:98788654-98788734 3.59e-06 26_[+1(1.96e-05)]_9_[+2(2.68e-05)]_\ 11_[+5(1.80e-05)]_10 chr1:161409745-161409825 2.18e-01 80 chr8:48091859-48091939 8.99e-01 80 chr7:158798511-158798591 1.41e-03 49_[+2(4.45e-05)]_23 chr7:92533811-92533891 2.68e-01 80 chr16:21531936-21532016 6.78e-01 80 chr17:56327218-56327298 1.65e-01 80 chr8:144301280-144301360 6.30e-01 80 chr19:17953249-17953329 6.52e-01 80 chr16:31438850-31438930 6.19e-02 71_[+1(1.96e-05)]_1 chr14:50779151-50779231 2.11e-01 80 chrX:101187193-101187273 2.45e-02 50_[+1(1.96e-05)]_22 chr19:40330709-40330789 4.81e-02 80 chr19:38943522-38943602 1.13e-01 80 chr11:14664990-14665070 2.66e-01 80 chr17:6927550-6927630 8.12e-03 33_[+1(1.96e-05)]_39 chr7:44261044-44261124 4.34e-01 80 chr8:30770565-30770645 2.79e-01 80 chr13:110359980-11036006 2.80e-01 80 chr1:235108292-235108372 2.56e-02 80 chr2:61035730-61035810 5.09e-02 80 chr15:41055728-41055808 7.25e-01 80 chr15:65596240-65596320 1.36e-01 80 chr17:79197206-79197286 7.29e-01 80 chr7:10819526-10819606 5.15e-02 60_[+1(3.89e-05)]_12 chr3:194991340-194991420 2.66e-01 80 chr21:47368507-47368587 1.62e-01 80 chr10:13459689-13459769 3.74e-01 80 chr20:33762570-33762650 4.17e-01 80 chr1:154972329-154972409 1.88e-01 80 chr16:30441877-30441957 8.50e-02 80 chr9:37079478-37079558 1.00e+00 80 chr19:3520436-3520516 8.91e-01 80 chr10:124713986-12471406 2.53e-01 80 chr10:86016885-86016965 3.04e-01 80 chr7:107300355-107300435 1.05e-01 80 chr7:40174596-40174676 9.17e-01 80 chr8:103602981-103603061 1.77e-02 80 chr4:90032304-90032384 7.77e-01 80 chr19:56151563-56151643 9.44e-01 80 chr11:108463669-10846374 1.68e-01 54_[+1(1.96e-05)]_18 chr16:85089694-85089774 9.30e-03 26_[+1(1.96e-05)]_46 chr11:14913102-14913182 9.62e-02 80 chr15:83315979-83316059 1.80e-01 80 chr14:23355863-23355943 7.04e-01 80 chr1:53926209-53926289 4.85e-02 80 chr9:77642649-77642729 3.20e-01 80 chr2:75185468-75185548 1.65e-01 80 chr12:4381750-4381830 1.14e-01 22_[+1(1.96e-05)]_50 chr1:223316221-223316301 8.88e-02 80 chr22:43253491-43253571 4.77e-01 80 chr10:43047657-43047737 8.12e-03 29_[+4(2.27e-05)]_43 chr12:19592149-19592229 5.66e-01 80 chr8:71581616-71581696 9.01e-01 80 chr20:35203143-35203223 5.95e-01 80 chr20:56100074-56100154 2.68e-01 80 chr1:226814422-226814502 2.03e-05 29_[+5(4.17e-06)]_7_[+3(2.44e-05)]_\ 28 chr3:15157888-15157968 9.46e-03 80 chr5:132201864-132201944 5.15e-02 80 chr17:74382105-74382185 1.40e-02 80 chr19:5803755-5803835 9.62e-01 80 chr10:49514372-49514452 7.59e-01 80 chr5:180479710-180479790 4.80e-03 80 chr22:38494033-38494113 2.92e-01 80 chr19:49631175-49631255 9.50e-01 80 chr1:158985361-158985441 1.33e-01 80 chr21:38361908-38361988 7.14e-05 30_[+2(1.54e-06)]_18_[+5(4.17e-06)]_\ 16 chr1:65785685-65785765 1.42e-02 80 chr17:80316851-80316931 9.74e-01 80 chr12:122711062-12271114 2.12e-01 20_[+1(1.96e-05)]_52 chr17:42015577-42015657 6.48e-01 80 chr10:31321008-31321088 6.48e-01 80 chr6:166726860-166726940 3.70e-01 80 chr13:26760528-26760608 2.86e-01 56_[+1(7.17e-05)]_16 chr2:98316705-98316785 4.30e-03 23_[+5(1.80e-05)]_49 chr14:100069988-10007006 6.97e-01 80 chrX:106920081-106920161 6.85e-01 80 chr1:212687614-212687694 9.88e-02 80 chr7:117067334-117067414 3.77e-01 80 chr17:61926853-61926933 2.86e-01 80 chr13:21347786-21347866 9.47e-01 80 chr3:135969931-135970011 8.38e-02 45_[+1(7.17e-05)]_27 chr8:146052057-146052137 7.64e-01 80 chrX:39547850-39547930 3.42e-02 21_[+1(7.17e-05)]_51 chr15:29077272-29077352 8.62e-01 80 chr4:53728661-53728741 1.96e-01 80 chr2:23583739-23583819 6.09e-02 18_[+1(1.96e-05)]_54 chr19:50249792-50249872 8.15e-01 80 chr16:82204146-82204226 2.06e-03 60_[+5(1.80e-05)]_12 chr8:86090106-86090186 2.53e-01 80 chr11:18656412-18656492 1.26e-01 80 chr11:3425679-3425759 1.48e-01 80 chr5:172710878-172710958 3.80e-01 80 chr12:3069244-3069324 3.79e-01 62_[+1(7.17e-05)]_10 chr2:33824690-33824770 1.39e-01 80 chr20:34189480-34189560 3.79e-01 8_[+1(7.17e-05)]_64 chr11:68025088-68025168 5.72e-01 80 chr17:79934592-79934672 4.41e-01 80 chr2:106015802-106015882 9.21e-01 80 chr8:142401560-142401640 5.89e-01 80 chr9:124976040-124976120 1.49e-02 4_[+2(2.68e-05)]_68 chr16:57318369-57318449 9.44e-01 80 chr11:14664645-14664725 2.34e-01 80 chr2:161126473-161126553 9.76e-03 72_[+3(2.51e-06)] chr5:96519530-96519610 1.21e-02 80 chr11:119210363-11921044 2.00e-01 80 chr7:50428323-50428403 4.17e-02 80 chr1:29676794-29676874 8.05e-02 13_[+1(7.17e-05)]_59 chr16:3355238-3355318 7.81e-01 80 chr2:54557758-54557838 9.52e-03 68_[+3(8.96e-05)]_4 chr17:38020392-38020472 4.11e-01 80 chr5:154062566-154062646 9.55e-01 80 chr12:118783305-11878338 7.14e-04 80 chr16:88184876-88184956 2.92e-01 80 chr1:112163251-112163331 3.86e-02 80 chr15:34730087-34730167 3.65e-09 61_[+2(1.54e-06)]_11 chr18:8660059-8660139 2.70e-02 61_[+5(2.91e-05)]_11 chr4:1037867-1037947 3.15e-03 54_[+1(3.89e-05)]_18 chr11:59570275-59570355 8.71e-07 22_[+4(4.21e-06)]_5_[+2(5.66e-06)]_\ 37 chr8:27737164-27737244 6.95e-01 80 chr8:103819775-103819855 1.64e-04 8_[+4(4.21e-06)]_64 chr3:111805275-111805355 5.10e-01 80 chrX:135180546-135180626 3.95e-01 80 chr10:45496941-45497021 3.19e-01 80 chr19:18700390-18700470 2.54e-01 80 chr6:14804816-14804896 1.56e-01 80 chr5:43042812-43042892 4.72e-01 80 chr2:182757037-182757117 7.32e-01 80 chr7:913166-913246 9.32e-06 56_[+2(8.24e-06)]_16 chr17:40897169-40897249 3.14e-01 80 chr11:316301-316381 8.78e-01 80 chr4:6711101-6711181 1.08e-02 80 chr3:46792340-46792420 9.18e-01 80 chr11:67044306-67044386 1.31e-03 34_[+2(2.68e-05)]_38 chr16:89884050-89884130 1.39e-01 80 chr6:150740405-150740485 1.79e-01 51_[+5(7.74e-05)]_21 chr1:156131283-156131363 9.32e-01 80 chr18:158213-158293 7.43e-01 80 chr5:8457424-8457504 5.10e-01 80 chr4:169930885-169930965 1.65e-01 80 chrX:129402980-129403060 1.30e-02 80 chr6:39083079-39083159 3.72e-01 80 chr10:99473869-99473949 5.60e-01 80 chr9:93956312-93956392 1.88e-01 80 chr5:176544059-176544139 3.96e-01 80 chr19:39993388-39993468 8.46e-01 80 chr11:124736414-12473649 2.48e-01 80 chr6:13874161-13874241 6.78e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n09.farnam.hpc.yale.internal ********************************************************************************