******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/MCM5.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr22:23240574-23240654 1.0000 80 chr13:91059605-91059685 1.0000 80 chr5:35066600-35066680 1.0000 80 chr13:91651404-91651484 1.0000 80 chr1:108754594-108754674 1.0000 80 chr6:28039847-28039927 1.0000 80 chr22:22962364-22962444 1.0000 80 chr13:91826291-91826371 1.0000 80 chr4:122668969-122669049 1.0000 80 chr19:33832009-33832089 1.0000 80 chr10:46988761-46988841 1.0000 80 chr11:102341838-10234191 1.0000 80 chr18:23798610-23798690 1.0000 80 chr13:91286089-91286169 1.0000 80 chr13:90617523-90617603 1.0000 80 chr1:115306059-115306139 1.0000 80 chr13:90816421-90816501 1.0000 80 chr20:35510143-35510223 1.0000 80 chr16:59365915-59365995 1.0000 80 chr1:244875044-244875124 1.0000 80 chr13:91849406-91849486 1.0000 80 chr9:126804083-126804163 1.0000 80 chr3:191138272-191138352 1.0000 80 chr22:23281699-23281779 1.0000 80 chr8:54780186-54780266 1.0000 80 chr21:36815028-36815108 1.0000 80 chr1:197812003-197812083 1.0000 80 chr6:7325033-7325113 1.0000 80 chr7:137881329-137881409 1.0000 80 chr7:131197147-131197227 1.0000 80 chr13:90785008-90785088 1.0000 80 chr22:20995124-20995204 1.0000 80 chr6:149875171-149875251 1.0000 80 chr2:409630-409710 1.0000 80 chr1:235025783-235025863 1.0000 80 chr7:140183450-140183530 1.0000 80 chr1:55163595-55163675 1.0000 80 chr21:27178461-27178541 1.0000 80 chr1:22669097-22669177 1.0000 80 chr16:21554749-21554829 1.0000 80 chr1:174054992-174055072 1.0000 80 chr1:110402193-110402273 1.0000 80 chr1:186623911-186623991 1.0000 80 chr1:143540668-143540748 1.0000 80 chr19:30375134-30375214 1.0000 80 chr19:10705300-10705380 1.0000 80 chr6:144648100-144648180 1.0000 80 chr14:64212170-64212250 1.0000 80 chr1:67572209-67572289 1.0000 80 chr1:54123562-54123642 1.0000 80 chr2:73400133-73400213 1.0000 80 chr1:228259975-228260055 1.0000 80 chr10:47084402-47084482 1.0000 80 chr22:22971821-22971901 1.0000 80 chr1:53099616-53099696 1.0000 80 chr1:225079131-225079211 1.0000 80 chr13:91937339-91937419 1.0000 80 chr7:134318434-134318514 1.0000 80 chr8:1761438-1761518 1.0000 80 chr5:14652627-14652707 1.0000 80 chr2:132281624-132281704 1.0000 80 chr13:90753361-90753441 1.0000 80 chr7:129887021-129887101 1.0000 80 chr10:50828096-50828176 1.0000 80 chr13:90793580-90793660 1.0000 80 chr22:21385427-21385507 1.0000 80 chr21:11167785-11167865 1.0000 80 chr1:233858433-233858513 1.0000 80 chr4:190527807-190527887 1.0000 80 chr22:17000273-17000353 1.0000 80 chr22:22988569-22988649 1.0000 80 chr16:14432181-14432261 1.0000 80 chr6:49982567-49982647 1.0000 80 chr13:91345066-91345146 1.0000 80 chr1:59608554-59608634 1.0000 80 chr5:74537992-74538072 1.0000 80 chr7:20285996-20286076 1.0000 80 chr6:6620127-6620207 1.0000 80 chr13:90489631-90489711 1.0000 80 chr5:1433787-1433867 1.0000 80 chr13:91781246-91781326 1.0000 80 chr7:111749341-111749421 1.0000 80 chr1:200165740-200165820 1.0000 80 chr1:189070068-189070148 1.0000 80 chr13:92179413-92179493 1.0000 80 chr7:104574892-104574972 1.0000 80 chr10:47047005-47047085 1.0000 80 chr7:158643123-158643203 1.0000 80 chr6:145198504-145198584 1.0000 80 chr5:567629-567709 1.0000 80 chr13:91202373-91202453 1.0000 80 chr1:15713416-15713496 1.0000 80 chr15:67104973-67105053 1.0000 80 chr22:19555996-19556076 1.0000 80 chr1:165368385-165368465 1.0000 80 chr22:23012300-23012380 1.0000 80 chr7:133964277-133964357 1.0000 80 chr7:522278-522358 1.0000 80 chr2:177000937-177001017 1.0000 80 chr7:26285549-26285629 1.0000 80 chr1:208053664-208053744 1.0000 80 chr13:93275479-93275559 1.0000 80 chr2:8330519-8330599 1.0000 80 chr10:46967404-46967484 1.0000 80 chr10:46997399-46997479 1.0000 80 chr13:91899011-91899091 1.0000 80 chr6:87856728-87856808 1.0000 80 chr16:84063927-84064007 1.0000 80 chr2:149384125-149384205 1.0000 80 chr22:22970060-22970140 1.0000 80 chr10:46955174-46955254 1.0000 80 chr13:92401039-92401119 1.0000 80 chr22:23361601-23361681 1.0000 80 chr2:243152859-243152939 1.0000 80 chr7:6664115-6664195 1.0000 80 chr12:34427294-34427374 1.0000 80 chr13:92091295-92091375 1.0000 80 chr13:92437966-92438046 1.0000 80 chr21:10140716-10140796 1.0000 80 chr18:7013713-7013793 1.0000 80 chr1:227747853-227747933 1.0000 80 chr5:73561259-73561339 1.0000 80 chr5:147889605-147889685 1.0000 80 chr13:81462276-81462356 1.0000 80 chr22:22795818-22795898 1.0000 80 chr13:90853135-90853215 1.0000 80 chr7:132859502-132859582 1.0000 80 chr13:92370529-92370609 1.0000 80 chr13:90597279-90597359 1.0000 80 chr13:91093606-91093686 1.0000 80 chr22:17066022-17066102 1.0000 80 chr10:43342197-43342277 1.0000 80 chr13:90965116-90965196 1.0000 80 chr2:146102005-146102085 1.0000 80 chr22:23278561-23278641 1.0000 80 chr2:95611957-95612037 1.0000 80 chr8:101857065-101857145 1.0000 80 chr17:36193968-36194048 1.0000 80 chr15:95394135-95394215 1.0000 80 chr18:33018466-33018546 1.0000 80 chr22:22438594-22438674 1.0000 80 chr1:180228264-180228344 1.0000 80 chr21:11138292-11138372 1.0000 80 chr1:198298308-198298388 1.0000 80 chr14:21096588-21096668 1.0000 80 chr6:139388004-139388084 1.0000 80 chr1:142914835-142914915 1.0000 80 chr7:159127461-159127541 1.0000 80 chr21:11082989-11083069 1.0000 80 chr2:11090112-11090192 1.0000 80 chr1:86622994-86623074 1.0000 80 chr13:91393562-91393642 1.0000 80 chr13:92103836-92103916 1.0000 80 chr1:206801998-206802078 1.0000 80 chr22:23279646-23279726 1.0000 80 chr1:15427770-15427850 1.0000 80 chr16:33394714-33394794 1.0000 80 chr7:141848031-141848111 1.0000 80 chr1:169756285-169756365 1.0000 80 chr15:21905485-21905565 1.0000 80 chr19:30132612-30132692 1.0000 80 chr4:108462805-108462885 1.0000 80 chr13:81193522-81193602 1.0000 80 chr13:91818701-91818781 1.0000 80 chr1:23096482-23096562 1.0000 80 chr1:142898160-142898240 1.0000 80 chr22:21407271-21407351 1.0000 80 chr22:23503144-23503224 1.0000 80 chr13:92276292-92276372 1.0000 80 chr22:17038549-17038629 1.0000 80 chr13:90561400-90561480 1.0000 80 chr1:143536886-143536966 1.0000 80 chr13:91175365-91175445 1.0000 80 chr13:90946215-90946295 1.0000 80 chr19:51586696-51586776 1.0000 80 chr6:361701-361781 1.0000 80 chr22:23405668-23405748 1.0000 80 chr13:81398545-81398625 1.0000 80 chr4:168021509-168021589 1.0000 80 chr1:148930660-148930740 1.0000 80 chr6:106370488-106370568 1.0000 80 chr13:92211587-92211667 1.0000 80 chr15:95395649-95395729 1.0000 80 chr13:91303984-91304064 1.0000 80 chr13:91919747-91919827 1.0000 80 chr5:536650-536730 1.0000 80 chr17:35195274-35195354 1.0000 80 chr22:20274435-20274515 1.0000 80 chr1:10967128-10967208 1.0000 80 chr2:180638847-180638927 1.0000 80 chr5:5705294-5705374 1.0000 80 chr13:90725755-90725835 1.0000 80 chr13:91878507-91878587 1.0000 80 chr22:23221174-23221254 1.0000 80 chr20:47131760-47131840 1.0000 80 chr13:92079944-92080024 1.0000 80 chr13:90599591-90599671 1.0000 80 chr22:17003683-17003763 1.0000 80 chr1:234461746-234461826 1.0000 80 chr6:738956-739036 1.0000 80 chr1:234876991-234877071 1.0000 80 chr22:21325841-21325921 1.0000 80 chr10:76549977-76550057 1.0000 80 chr13:81436800-81436880 1.0000 80 chr2:496970-497050 1.0000 80 chr3:177354021-177354101 1.0000 80 chr22:21330292-21330372 1.0000 80 chr7:112771689-112771769 1.0000 80 chr10:47148244-47148324 1.0000 80 chr1:142967211-142967291 1.0000 80 chr7:149217674-149217754 1.0000 80 chr10:47014227-47014307 1.0000 80 chr2:91778103-91778183 1.0000 80 chr22:23465441-23465521 1.0000 80 chr6:144204023-144204103 1.0000 80 chr7:96741276-96741356 1.0000 80 chr8:21153102-21153182 1.0000 80 chr1:30276736-30276816 1.0000 80 chr9:66455410-66455490 1.0000 80 chr13:91492322-91492402 1.0000 80 chr6:135216797-135216877 1.0000 80 chr22:23415515-23415595 1.0000 80 chr6:158163246-158163326 1.0000 80 chr18:34042243-34042323 1.0000 80 chr2:145429610-145429690 1.0000 80 chr21:46331132-46331212 1.0000 80 chr13:92294759-92294839 1.0000 80 chr10:46964881-46964961 1.0000 80 chr6:168202141-168202221 1.0000 80 chr17:21555949-21556029 1.0000 80 chr1:170534322-170534402 1.0000 80 chr22:19139467-19139547 1.0000 80 chr6:32261278-32261358 1.0000 80 chr8:49638826-49638906 1.0000 80 chr2:91769522-91769602 1.0000 80 chr12:115720118-11572019 1.0000 80 chr13:92121396-92121476 1.0000 80 chr22:23329045-23329125 1.0000 80 chr1:200388717-200388797 1.0000 80 chr22:22915997-22916077 1.0000 80 chr1:19128909-19128989 1.0000 80 chr7:158386833-158386913 1.0000 80 chr22:23409229-23409309 1.0000 80 chr16:5427552-5427632 1.0000 80 chr13:91239354-91239434 1.0000 80 chr1:229722886-229722966 1.0000 80 chr12:25544048-25544128 1.0000 80 chr13:91828391-91828471 1.0000 80 chr3:13972947-13973027 1.0000 80 chr2:91785424-91785504 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_MCM5/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/MCM5.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.258 C 0.249 G 0.23 T 0.263 Background letter frequencies (from file dataset with add-one prior applied): A 0.258 C 0.249 G 0.23 T 0.263 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AGGMAGRR MEME-1 width = 8 sites = 84 llr = 600 E-value = 2.1e-015 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGGMAGRR MEME-1 Description -------------------------------------------------------------------------------- Simplified A a1358156 pos.-specific C :::4:::: probability G :971:954 matrix T ::::2::: bits 2.1 1.9 * 1.7 ** 1.5 ** * Relative 1.3 *** ** Entropy 1.1 *** **** (10.3 bits) 0.8 *** **** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGGAAGAA consensus AC GG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGMAGRR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr16:5427552-5427632 7 2.63e-05 agggaa aggAAGGA AAGgaaagag chr1:170534322-170534402 32 2.63e-05 aatataagaa aggaagaa agagagagag chr13:81436800-81436880 6 2.63e-05 GCTCC AGGAAGGA CGAGAGGAAC chr1:234461746-234461826 52 2.63e-05 gaagaggaag aggaagaa gaaagaagaa chr6:106370488-106370568 32 2.63e-05 acggagaagt aggaagaa caagaagaac chr1:148930660-148930740 20 2.63e-05 AGGTCTGTGG AGGAAGGA GAAGAAGGGC chr22:23279646-23279726 13 2.63e-05 TTCCTCAGGC AGGAAGAA TTGTATGGTA chr1:206801998-206802078 4 2.63e-05 aag aggaagaa agaagaagaa chr22:19555996-19556076 67 2.63e-05 CAGGGAGTTC AGGAAGGA gagtgg chr1:189070068-189070148 6 2.63e-05 aagga aggaagga GAAAAGGTTg chr6:6620127-6620207 45 2.63e-05 TTTACAAAGC AGGAAGGA CATTGCAATC chr14:64212170-64212250 16 2.63e-05 agaaagagag aggaagga aggaaggaag chr1:143540668-143540748 43 2.63e-05 ggaaggcagg aggaagaa tgtaggaaac chr19:33832009-33832089 33 2.63e-05 gaaggcagga aggaagga aagaaggagg chr22:23415515-23415595 17 5.17e-05 GGTCAGCCCC AGGCAGAA TCCCAGAGCA chr7:96741276-96741356 28 5.17e-05 gtggaggctg aggcagaa gaatcgcttg chr13:91393562-91393642 11 5.17e-05 tctgctcacc aggcagga gtgcaatggt chr13:91202373-91202453 9 5.17e-05 ggaggctg aggcagga gaatcgattg chr13:91781246-91781326 27 5.17e-05 TGAGTGAGTT AGGCAGGA AAAAGAAAAA chr22:20995124-20995204 65 5.17e-05 tgggaggctg aggcagga gaattgct chr6:28039847-28039927 5 5.17e-05 gctg aggcagga gaattgcttg chr22:22915997-22916077 62 7.52e-05 ACCAGGGGAC AGGAAGGG TATGAGTTTG chr5:73561259-73561339 38 7.52e-05 AGAGGATATT AGGAAGAG GTAAGAAAAA chr13:91899011-91899091 47 7.52e-05 tgagatctga aggaagag taaaggttga chr21:11167785-11167865 60 7.52e-05 cagccaagcc aggaagag gcaggaatgg chr10:50828096-50828176 35 7.52e-05 ATTGGAGGAC AGGAAGGG ACAAGGATGA chr6:7325033-7325113 11 7.52e-05 CTGATTTCAG AGGAAGAG CTGTCCCTGT chr13:90725755-90725835 51 9.78e-05 tgaacctggg aggcagag gttgcagtgg chr1:143536886-143536966 21 9.78e-05 tggacctggg aggcagag gttgcatgag chr7:20285996-20286076 55 9.78e-05 GTTTAGGGAA AGGCAGAG AGATCAATGT chr1:67572209-67572289 60 9.78e-05 tgaacctggg aggcagag gttgcagcaa chr22:23240574-23240654 67 9.78e-05 AAGGGAAGGA AGGCAGAG GGATGA chr1:186623911-186623991 6 1.27e-04 gagaa agaaagaa aaaagagaga chr22:17066022-17066102 57 1.56e-04 agggaggctg agacagga gaatcacttg chr18:7013713-7013793 66 1.56e-04 GAGGAGCCAG AGACAGGA TGAAAGA chr1:235025783-235025863 21 1.56e-04 CCATTGGAAT AGACAGAA TTGGCTGAGC chr2:91769522-91769602 9 1.82e-04 AGAGGGAA AGAAAGGG AAAGGAGAAT chr9:66455410-66455490 47 1.82e-04 agggaagtag agaaaggg aaagggtgag chr10:47014227-47014307 33 1.82e-04 gacagaggag agaaagag acagaggaga chr19:51586696-51586776 14 1.82e-04 agagagagag agaaagag agagacagag chr13:92276292-92276372 9 1.82e-04 AATGAGCA AGAAAGAG TGAACGATTA chr19:30132612-30132692 1 1.82e-04 . agaaagag aaGCAgaaga chr18:34042243-34042323 71 2.34e-04 GTTGtttttg agacagag tc chr22:22988569-22988649 54 2.34e-04 AATGCGACAG AGACAGGG AGTCAGACTG chr22:21385427-21385507 28 2.34e-04 AGGCTGGGCC AGGATGAA GCCCAGGATG chr13:91059605-91059685 44 2.34e-04 ggagcaggag agacagag agagcaaagg chr1:200388717-200388797 24 2.60e-04 tctgttgccc aggctgga gtgaaatggc chr13:92121396-92121476 10 2.60e-04 gtgttgccc aggctgga gtgcagtggc chr18:23798610-23798690 26 2.60e-04 tttgtcatcc aggctgga gtgcagtagt chr11:102341838-10234191 67 2.60e-04 cttgttgccc aggctgga atgtaa chr22:23409229-23409309 67 2.84e-04 TGTAGGGGCT AGGATGGG TTCAGT chr13:92401039-92401119 8 2.84e-04 atcttga aggatggg tagaaagttg chr13:91303984-91304064 36 3.07e-04 aatgacattc aggctgag gtggtcttag chr5:147889605-147889685 26 3.60e-04 ggaggtaaaa aggaaaga aaaagtgaaa chr2:243152859-243152939 59 3.60e-04 ggcagcaaac aggaaaga ttttattcac chr13:90785008-90785088 33 3.60e-04 cagatcttag aggaaaga cttttggttt chr1:23096482-23096562 38 3.89e-04 GGTGAGTGGA AGGCAAGA TGGCAGAATG chr1:200165740-200165820 21 3.89e-04 gtaataattc aggcaaga gataaaggtg chr22:23278561-23278641 58 4.18e-04 ACAACAGGGC AAGAAGAA GTGAGGAAAG chr7:137881329-137881409 17 4.18e-04 gaagcagcag aagaagAA ACAGTCATGC chr13:91651404-91651484 30 4.18e-04 agccataaaa aagaagga agtgttaaca chr10:46964881-46964961 23 4.94e-04 aggtgtatgc aagcagaa actggatggt chr10:46955174-46955254 47 4.94e-04 ggacccacca aggaaaag aagcctaata chr2:177000937-177001017 26 4.94e-04 GGAGGCGGGG AGGGAGGG AAGAACCACg chr1:22669097-22669177 18 4.94e-04 acaaagagaa aagcagaa acagagacCA chr3:191138272-191138352 30 4.94e-04 ccatatgtag aagcagaa gaggtgaatg chr22:21325841-21325921 16 5.19e-04 GGGACAGCTC AGGCAAAG GCCTGGAGGT chr20:35510143-35510223 21 5.19e-04 ggggacacca aggcaaag gtgggctcgg chr22:21330292-21330372 66 5.76e-04 TGAAGCGTAA AGAATGAA GCCCAGG chr1:142914835-142914915 8 5.76e-04 ccaaggt agaatgaa ccacagccca chr13:90793580-90793660 60 5.76e-04 tacacccatc agaatgga tgaagtaaaa chr22:20274435-20274515 55 6.30e-04 AAtgatacgg aagcaggg gagggaagtg chr7:159127461-159127541 22 6.30e-04 tttgttatac agactgaa gtctatgcat chr13:92091295-92091375 10 6.30e-04 gggagctgt agactgga gctgttccta chr13:91878507-91878587 57 6.57e-04 TCCCAGAATA AGAATGAG GTCAGCATCC chr22:17003683-17003763 49 6.83e-04 tttttagtag agactggg tttccctatg chr13:92211587-92211667 64 6.83e-04 ctaaagccac agactgag aaccaggga chr16:21554749-21554829 42 7.42e-04 aagccagggc agaaaaga catcgtgtcc chr13:92179413-92179493 27 7.74e-04 gtgtcatctt agacaaaa caactccctt chr5:567629-567709 41 8.92e-04 AGAACAAGAG AGAGAGAG AGCAGTGGAC chr21:10140716-10140796 73 1.09e-03 tagtgctata aaacaggg chr22:22438594-22438674 21 1.25e-03 CTCCCTGGGT AGGGAAAA CACTGTTCCC chr6:149875171-149875251 59 1.25e-03 tatactgaac agggaaaa gtttaaagca chr4:108462805-108462885 40 1.50e-03 agagtgggag aaggagag aggtaaacaa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGMAGRR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:5427552-5427632 2.6e-05 6_[+1]_66 chr1:170534322-170534402 2.6e-05 31_[+1]_41 chr13:81436800-81436880 2.6e-05 5_[+1]_67 chr1:234461746-234461826 2.6e-05 51_[+1]_21 chr6:106370488-106370568 2.6e-05 31_[+1]_41 chr1:148930660-148930740 2.6e-05 19_[+1]_53 chr22:23279646-23279726 2.6e-05 12_[+1]_60 chr1:206801998-206802078 2.6e-05 3_[+1]_69 chr22:19555996-19556076 2.6e-05 66_[+1]_6 chr1:189070068-189070148 2.6e-05 5_[+1]_67 chr6:6620127-6620207 2.6e-05 44_[+1]_28 chr14:64212170-64212250 2.6e-05 15_[+1]_57 chr1:143540668-143540748 2.6e-05 42_[+1]_30 chr19:33832009-33832089 2.6e-05 32_[+1]_40 chr22:23415515-23415595 5.2e-05 16_[+1]_56 chr7:96741276-96741356 5.2e-05 27_[+1]_45 chr13:91393562-91393642 5.2e-05 10_[+1]_62 chr13:91202373-91202453 5.2e-05 8_[+1]_64 chr13:91781246-91781326 5.2e-05 26_[+1]_46 chr22:20995124-20995204 5.2e-05 64_[+1]_8 chr6:28039847-28039927 5.2e-05 4_[+1]_68 chr22:22915997-22916077 7.5e-05 61_[+1]_11 chr5:73561259-73561339 7.5e-05 37_[+1]_35 chr13:91899011-91899091 7.5e-05 46_[+1]_26 chr21:11167785-11167865 7.5e-05 59_[+1]_13 chr10:50828096-50828176 7.5e-05 34_[+1]_38 chr6:7325033-7325113 7.5e-05 10_[+1]_62 chr13:90725755-90725835 9.8e-05 50_[+1]_22 chr1:143536886-143536966 9.8e-05 20_[+1]_52 chr7:20285996-20286076 9.8e-05 54_[+1]_18 chr1:67572209-67572289 9.8e-05 59_[+1]_13 chr22:23240574-23240654 9.8e-05 66_[+1]_6 chr1:186623911-186623991 0.00013 5_[+1]_67 chr22:17066022-17066102 0.00016 56_[+1]_16 chr18:7013713-7013793 0.00016 65_[+1]_7 chr1:235025783-235025863 0.00016 20_[+1]_52 chr2:91769522-91769602 0.00018 8_[+1]_64 chr9:66455410-66455490 0.00018 46_[+1]_26 chr10:47014227-47014307 0.00018 32_[+1]_40 chr19:51586696-51586776 0.00018 13_[+1]_59 chr13:92276292-92276372 0.00018 8_[+1]_64 chr19:30132612-30132692 0.00018 [+1]_72 chr18:34042243-34042323 0.00023 70_[+1]_2 chr22:22988569-22988649 0.00023 53_[+1]_19 chr22:21385427-21385507 0.00023 27_[+1]_45 chr13:91059605-91059685 0.00023 43_[+1]_29 chr1:200388717-200388797 0.00026 23_[+1]_49 chr13:92121396-92121476 0.00026 9_[+1]_63 chr18:23798610-23798690 0.00026 25_[+1]_47 chr11:102341838-10234191 0.00026 66_[+1]_6 chr22:23409229-23409309 0.00028 66_[+1]_6 chr13:92401039-92401119 0.00028 7_[+1]_65 chr13:91303984-91304064 0.00031 35_[+1]_37 chr5:147889605-147889685 0.00036 25_[+1]_47 chr2:243152859-243152939 0.00036 58_[+1]_14 chr13:90785008-90785088 0.00036 32_[+1]_40 chr1:23096482-23096562 0.00039 37_[+1]_35 chr1:200165740-200165820 0.00039 20_[+1]_52 chr22:23278561-23278641 0.00042 57_[+1]_15 chr7:137881329-137881409 0.00042 16_[+1]_56 chr13:91651404-91651484 0.00042 29_[+1]_43 chr10:46964881-46964961 0.00049 22_[+1]_50 chr10:46955174-46955254 0.00049 46_[+1]_26 chr2:177000937-177001017 0.00049 25_[+1]_47 chr1:22669097-22669177 0.00049 17_[+1]_55 chr3:191138272-191138352 0.00049 29_[+1]_43 chr22:21325841-21325921 0.00052 15_[+1]_57 chr20:35510143-35510223 0.00052 20_[+1]_52 chr22:21330292-21330372 0.00058 65_[+1]_7 chr1:142914835-142914915 0.00058 7_[+1]_65 chr13:90793580-90793660 0.00058 59_[+1]_13 chr22:20274435-20274515 0.00063 54_[+1]_18 chr7:159127461-159127541 0.00063 21_[+1]_51 chr13:92091295-92091375 0.00063 9_[+1]_63 chr13:91878507-91878587 0.00066 56_[+1]_16 chr22:17003683-17003763 0.00068 48_[+1]_24 chr13:92211587-92211667 0.00068 63_[+1]_9 chr16:21554749-21554829 0.00074 41_[+1]_31 chr13:92179413-92179493 0.00077 26_[+1]_46 chr5:567629-567709 0.00089 40_[+1]_32 chr21:10140716-10140796 0.0011 72_[+1] chr22:22438594-22438674 0.0012 20_[+1]_52 chr6:149875171-149875251 0.0012 58_[+1]_14 chr4:108462805-108462885 0.0015 39_[+1]_33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGMAGRR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGGMAGRR width=8 seqs=84 chr16:5427552-5427632 ( 7) AGGAAGGA 1 chr1:170534322-170534402 ( 32) AGGAAGAA 1 chr13:81436800-81436880 ( 6) AGGAAGGA 1 chr1:234461746-234461826 ( 52) AGGAAGAA 1 chr6:106370488-106370568 ( 32) AGGAAGAA 1 chr1:148930660-148930740 ( 20) AGGAAGGA 1 chr22:23279646-23279726 ( 13) AGGAAGAA 1 chr1:206801998-206802078 ( 4) AGGAAGAA 1 chr22:19555996-19556076 ( 67) AGGAAGGA 1 chr1:189070068-189070148 ( 6) AGGAAGGA 1 chr6:6620127-6620207 ( 45) AGGAAGGA 1 chr14:64212170-64212250 ( 16) AGGAAGGA 1 chr1:143540668-143540748 ( 43) AGGAAGAA 1 chr19:33832009-33832089 ( 33) AGGAAGGA 1 chr22:23415515-23415595 ( 17) AGGCAGAA 1 chr7:96741276-96741356 ( 28) AGGCAGAA 1 chr13:91393562-91393642 ( 11) AGGCAGGA 1 chr13:91202373-91202453 ( 9) AGGCAGGA 1 chr13:91781246-91781326 ( 27) AGGCAGGA 1 chr22:20995124-20995204 ( 65) AGGCAGGA 1 chr6:28039847-28039927 ( 5) AGGCAGGA 1 chr22:22915997-22916077 ( 62) AGGAAGGG 1 chr5:73561259-73561339 ( 38) AGGAAGAG 1 chr13:91899011-91899091 ( 47) AGGAAGAG 1 chr21:11167785-11167865 ( 60) AGGAAGAG 1 chr10:50828096-50828176 ( 35) AGGAAGGG 1 chr6:7325033-7325113 ( 11) AGGAAGAG 1 chr13:90725755-90725835 ( 51) AGGCAGAG 1 chr1:143536886-143536966 ( 21) AGGCAGAG 1 chr7:20285996-20286076 ( 55) AGGCAGAG 1 chr1:67572209-67572289 ( 60) AGGCAGAG 1 chr22:23240574-23240654 ( 67) AGGCAGAG 1 chr1:186623911-186623991 ( 6) AGAAAGAA 1 chr22:17066022-17066102 ( 57) AGACAGGA 1 chr18:7013713-7013793 ( 66) AGACAGGA 1 chr1:235025783-235025863 ( 21) AGACAGAA 1 chr2:91769522-91769602 ( 9) AGAAAGGG 1 chr9:66455410-66455490 ( 47) AGAAAGGG 1 chr10:47014227-47014307 ( 33) AGAAAGAG 1 chr19:51586696-51586776 ( 14) AGAAAGAG 1 chr13:92276292-92276372 ( 9) AGAAAGAG 1 chr19:30132612-30132692 ( 1) AGAAAGAG 1 chr18:34042243-34042323 ( 71) AGACAGAG 1 chr22:22988569-22988649 ( 54) AGACAGGG 1 chr22:21385427-21385507 ( 28) AGGATGAA 1 chr13:91059605-91059685 ( 44) AGACAGAG 1 chr1:200388717-200388797 ( 24) AGGCTGGA 1 chr13:92121396-92121476 ( 10) AGGCTGGA 1 chr18:23798610-23798690 ( 26) AGGCTGGA 1 chr11:102341838-10234191 ( 67) AGGCTGGA 1 chr22:23409229-23409309 ( 67) AGGATGGG 1 chr13:92401039-92401119 ( 8) AGGATGGG 1 chr13:91303984-91304064 ( 36) AGGCTGAG 1 chr5:147889605-147889685 ( 26) AGGAAAGA 1 chr2:243152859-243152939 ( 59) AGGAAAGA 1 chr13:90785008-90785088 ( 33) AGGAAAGA 1 chr1:23096482-23096562 ( 38) AGGCAAGA 1 chr1:200165740-200165820 ( 21) AGGCAAGA 1 chr22:23278561-23278641 ( 58) AAGAAGAA 1 chr7:137881329-137881409 ( 17) AAGAAGAA 1 chr13:91651404-91651484 ( 30) AAGAAGGA 1 chr10:46964881-46964961 ( 23) AAGCAGAA 1 chr10:46955174-46955254 ( 47) AGGAAAAG 1 chr2:177000937-177001017 ( 26) AGGGAGGG 1 chr1:22669097-22669177 ( 18) AAGCAGAA 1 chr3:191138272-191138352 ( 30) AAGCAGAA 1 chr22:21325841-21325921 ( 16) AGGCAAAG 1 chr20:35510143-35510223 ( 21) AGGCAAAG 1 chr22:21330292-21330372 ( 66) AGAATGAA 1 chr1:142914835-142914915 ( 8) AGAATGAA 1 chr13:90793580-90793660 ( 60) AGAATGGA 1 chr22:20274435-20274515 ( 55) AAGCAGGG 1 chr7:159127461-159127541 ( 22) AGACTGAA 1 chr13:92091295-92091375 ( 10) AGACTGGA 1 chr13:91878507-91878587 ( 57) AGAATGAG 1 chr22:17003683-17003763 ( 49) AGACTGGG 1 chr13:92211587-92211667 ( 64) AGACTGAG 1 chr16:21554749-21554829 ( 42) AGAAAAGA 1 chr13:92179413-92179493 ( 27) AGACAAAA 1 chr5:567629-567709 ( 41) AGAGAGAG 1 chr21:10140716-10140796 ( 73) AAACAGGG 1 chr22:22438594-22438674 ( 21) AGGGAAAA 1 chr6:149875171-149875251 ( 59) AGGGAAAA 1 chr4:108462805-108462885 ( 40) AAGGAGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGMAGRR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.61772 E= 2.1e-015 195 -1304 -1304 -1304 -127 -1304 195 -1304 21 -1304 161 -1304 95 82 -195 -1304 165 -1304 -1304 -46 -85 -1304 189 -1304 105 -1304 101 -1304 121 -1304 81 -1304 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGMAGRR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 84 E= 2.1e-015 1.000000 0.000000 0.000000 0.000000 0.107143 0.000000 0.892857 0.000000 0.297619 0.000000 0.702381 0.000000 0.500000 0.440476 0.059524 0.000000 0.809524 0.000000 0.000000 0.190476 0.142857 0.000000 0.857143 0.000000 0.535714 0.000000 0.464286 0.000000 0.595238 0.000000 0.404762 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGMAGRR MEME-1 regular expression -------------------------------------------------------------------------------- AG[GA][AC]AG[AG][AG] -------------------------------------------------------------------------------- Time 5.03 secs. ******************************************************************************** ******************************************************************************** MOTIF YTYTCYCT MEME-2 width = 8 sites = 83 llr = 582 E-value = 1.9e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif YTYTCYCT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 626:748: probability G ::::3::: matrix T 484a162a bits 2.1 1.9 * * 1.7 * * 1.5 * * Relative 1.3 * * ** Entropy 1.1 **** *** (10.1 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTCTCTCT consensus T T GCT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTYTCYCT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr22:19139467-19139547 41 1.84e-05 agcctggcct ctctctct gctccacgct chr2:91778103-91778183 16 1.84e-05 CTCTCTCTCT CTCTCTCT GAAGCCTGGG chr4:168021509-168021589 49 1.84e-05 ctgtctctgt ctctctct ctctctcttc chr1:15427770-15427850 25 1.84e-05 gtccctttct ctctctct gtctccctcC chr1:227747853-227747933 11 1.84e-05 TTGGAGAGCG CTCTCTCT CCAGGGCTCT chr12:34427294-34427374 60 1.84e-05 ccgtgtgtct ctctctct gtctctcttt chr6:145198504-145198584 73 1.84e-05 CAATCTTGGt ctctctct chr7:129887021-129887101 66 1.84e-05 gagacaatgt ctctctct gtcaccc chr1:225079131-225079211 12 1.84e-05 cactctctac ctctctct agttacctcc chr11:102341838-10234191 29 1.84e-05 ctttccttcc ctctctct ctttctttct chr8:21153102-21153182 67 3.78e-05 tcctaatccc ctttctct catctc chr6:738956-739036 57 3.78e-05 tcccttcctt ctttctct ttctttcctt chr2:8330519-8330599 45 3.78e-05 ctcccttttc ctttctct tccctccttc chr4:190527807-190527887 22 3.78e-05 tccctcctcc ctttctct tctctcccct chr13:90617523-90617603 1 3.78e-05 . ctttctct tcctctccct chr6:168202141-168202221 61 7.47e-05 acaccttaca ctctccct ttctacttcc chr2:145429610-145429690 65 7.47e-05 gctccctgtt ttctctct cctccctt chr2:95611957-95612037 24 7.47e-05 tattttcccc ttctctct ggccaccctt chr7:134318434-134318514 29 7.47e-05 ttccctcctt ctctccct tcctgtgtcc chr1:54123562-54123642 21 7.47e-05 CCTCTCTGTT CTCTCCCT TTCAGCCTCA chr2:91785424-91785504 15 1.14e-04 CTCCCTATTC CTTTCCCT TCTTCCCTCT chr6:144204023-144204103 42 1.14e-04 TCAAGCATTC TTTTCTCT TTGCCACCTC chr17:35195274-35195354 27 1.14e-04 ttccttgtgc ttttctct gtctcctttc chr13:91919747-91919827 57 1.14e-04 gttccaactc ctttccct cagcactcca chr1:169756285-169756365 16 1.14e-04 CATTTTGATG CTTTCCCt gcagggtgca chr1:86622994-86623074 4 1.14e-04 TCT TTTTCTCT ACCCTTTTCA chr13:90853135-90853215 56 1.14e-04 tctttgacta ttttctct cattcctgcc chr22:22970060-22970140 64 1.14e-04 gactagattc ttttctct tggtggttt chr15:67104973-67105053 62 1.14e-04 ttttactttt ttttctct aaacttctct chr17:21555949-21556029 12 1.49e-04 TCCTCCTGCC CTCTGTCT CCTCTGCATC chr6:135216797-135216877 33 1.49e-04 ACCATGTCTC TTCTCCCT AATACCCAAC chr10:76549977-76550057 35 1.49e-04 cagagcgaga ctctgtct caaaaacaaa chr5:536650-536730 40 1.49e-04 GACTCTGCCT TTCTCCCT GAGCGTTGTG chr1:142898160-142898240 6 1.49e-04 TGAGT TTCTCCCT GTTTCACCAC chr6:139388004-139388084 39 1.49e-04 CTGTCTTCCT ttctccct tcctccttct chr13:91093606-91093686 66 1.49e-04 tagagcaaga ctctgtct caaaaac chr7:111749341-111749421 38 1.49e-04 CTAACTACAC TTCTCCCT CTAGTTAGGT chr19:10705300-10705380 41 1.49e-04 gaaacactcc ttctccct ctcccaaccc chr22:22962364-22962444 15 1.49e-04 ATTTCAGGAG CTCTGTCT GGGCCAGGCA chr15:95395649-95395729 54 1.86e-04 cagtttgtca ctttgtct tctaagtgag chr8:101857065-101857145 4 1.86e-04 aga ctttgtct cTACATACAA chr13:90785008-90785088 10 1.86e-04 agtggacat ctttgtct tgttacagat chr13:92121396-92121476 49 2.20e-04 tcactgcaat ctctgcct cccgcattca chr1:15713416-15713496 25 2.20e-04 tcactgcaac ctctgcct cccaggctca chr6:7325033-7325113 55 2.57e-04 ggagcctagt ctctcttt tctcctctga chr12:115720118-11572019 40 3.49e-04 tttttttttt ctttcttt ccttccttcc chr7:159127461-159127541 73 3.49e-04 atttacttat ccttctct chr14:21096588-21096668 30 3.49e-04 CCTGCCTTTT TTCTGCCT GCATCACTTC chr10:47084402-47084482 50 3.49e-04 gctccctgct ccttctct gatctctcaa chr19:30375134-30375214 36 4.23e-04 ctttcctttc ctctcctt ctccttcccc chr1:174054992-174055072 46 4.23e-04 gcaatttgta tcctctct atttttcttt chr13:91849406-91849486 19 4.23e-04 acaactacca ttctcttt tctatctcta chr5:35066600-35066680 60 4.23e-04 catcttcctt ctctcctt cctcttctta chr6:361701-361781 27 4.60e-04 aaactattgt ctctttct gagcctatca chr16:21554749-21554829 66 4.60e-04 gtccatctgg ctctttct ggaaatg chr22:23329045-23329125 41 5.38e-04 atctgcacct ccttccct ctcaggcctt chr6:32261278-32261358 61 5.38e-04 CCCATCTCAC TCTTCTCT ACCTGGGCTT chr1:234876991-234877071 38 5.38e-04 tgatttctgc tcttctct gggtgagcca chr2:146102005-146102085 62 5.38e-04 taccttcctt ctttcctt ccttccttct chr7:26285549-26285629 44 5.38e-04 aacgtgcagc ctttcctt gtcctccatc chr8:1761438-1761518 40 5.38e-04 CATCCTACAT CTTTCCTT GCCCTTGTTC chr6:144648100-144648180 4 5.38e-04 TGA CTTTCCTT CAAATCTCAT chr20:47131760-47131840 5 6.09e-04 ttgc tcctccct gatcagcagc chr10:47047005-47047085 59 6.09e-04 tctccacatt ttctcctt cagaacattg chr7:104574892-104574972 64 6.09e-04 CCCACCCACC TTCTCCTT AATTCCTCC chr2:132281624-132281704 35 6.29e-04 gctttggtct ctttttct gccttatgct chr1:244875044-244875124 71 6.68e-04 ttcattgtcc ctcttcct gc chr7:140183450-140183530 61 7.43e-04 ttgtttgttt ctttgttt gttttgtttg chr13:91828391-91828471 42 8.11e-04 ATGGATACTC TCCTGTCT CGTTTTCTCC chr1:200388717-200388797 63 8.11e-04 tcacctcaac ccctgcct cctgagttca chr13:92103836-92103916 26 8.11e-04 AGGACAACTC TTCTGttt gtttgttttt chr10:43342197-43342277 48 8.11e-04 actgcaacct ccctgcct gattctcctg chr6:49982567-49982647 50 8.11e-04 ttagatgtca tcctgtct tgccaactca chr18:34042243-34042323 32 9.62e-04 tgtgtgtttg tTTTGTTT TGCTTTTTGG chr21:11138292-11138372 73 9.62e-04 TGTTATGTTA ttttgttt chr22:23361601-23361681 14 9.62e-04 ggctggcctt ttttgttt tgtttttttg chr13:90561400-90561480 50 1.02e-03 caagtgattc tcctgcct cagcctccca chr13:91345066-91345146 23 1.02e-03 tcagccattc tcctgcct cagccacccg chr1:229722886-229722966 73 1.07e-03 cccctgaacc tcctcttt chr1:197812003-197812083 50 1.07e-03 ACTTTCATGC TTTTTCCT CATAGTCTCT chr22:23405668-23405748 10 1.26e-03 acactgcct ccttttct cacctgtgaa chr21:27178461-27178541 7 1.34e-03 CACACA TCCTTTCT CACTTAGCTA chr7:132859502-132859582 73 1.50e-03 GGATTTGGGG tttttttt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTYTCYCT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:19139467-19139547 1.8e-05 40_[+2]_32 chr2:91778103-91778183 1.8e-05 15_[+2]_57 chr4:168021509-168021589 1.8e-05 48_[+2]_24 chr1:15427770-15427850 1.8e-05 24_[+2]_48 chr1:227747853-227747933 1.8e-05 10_[+2]_62 chr12:34427294-34427374 1.8e-05 59_[+2]_13 chr6:145198504-145198584 1.8e-05 72_[+2] chr7:129887021-129887101 1.8e-05 65_[+2]_7 chr1:225079131-225079211 1.8e-05 11_[+2]_61 chr11:102341838-10234191 1.8e-05 28_[+2]_44 chr8:21153102-21153182 3.8e-05 66_[+2]_6 chr6:738956-739036 3.8e-05 56_[+2]_16 chr2:8330519-8330599 3.8e-05 44_[+2]_28 chr4:190527807-190527887 3.8e-05 21_[+2]_51 chr13:90617523-90617603 3.8e-05 [+2]_72 chr6:168202141-168202221 7.5e-05 60_[+2]_12 chr2:145429610-145429690 7.5e-05 64_[+2]_8 chr2:95611957-95612037 7.5e-05 23_[+2]_49 chr7:134318434-134318514 7.5e-05 28_[+2]_44 chr1:54123562-54123642 7.5e-05 20_[+2]_52 chr2:91785424-91785504 0.00011 14_[+2]_58 chr6:144204023-144204103 0.00011 41_[+2]_31 chr17:35195274-35195354 0.00011 26_[+2]_46 chr13:91919747-91919827 0.00011 56_[+2]_16 chr1:169756285-169756365 0.00011 15_[+2]_57 chr1:86622994-86623074 0.00011 3_[+2]_69 chr13:90853135-90853215 0.00011 55_[+2]_17 chr22:22970060-22970140 0.00011 63_[+2]_9 chr15:67104973-67105053 0.00011 61_[+2]_11 chr17:21555949-21556029 0.00015 11_[+2]_61 chr6:135216797-135216877 0.00015 32_[+2]_40 chr10:76549977-76550057 0.00015 34_[+2]_38 chr5:536650-536730 0.00015 39_[+2]_33 chr1:142898160-142898240 0.00015 5_[+2]_67 chr6:139388004-139388084 0.00015 38_[+2]_34 chr13:91093606-91093686 0.00015 65_[+2]_7 chr7:111749341-111749421 0.00015 37_[+2]_35 chr19:10705300-10705380 0.00015 40_[+2]_32 chr22:22962364-22962444 0.00015 14_[+2]_58 chr15:95395649-95395729 0.00019 53_[+2]_19 chr8:101857065-101857145 0.00019 3_[+2]_69 chr13:90785008-90785088 0.00019 9_[+2]_63 chr13:92121396-92121476 0.00022 48_[+2]_24 chr1:15713416-15713496 0.00022 24_[+2]_48 chr6:7325033-7325113 0.00026 54_[+2]_18 chr12:115720118-11572019 0.00035 39_[+2]_33 chr7:159127461-159127541 0.00035 72_[+2] chr14:21096588-21096668 0.00035 29_[+2]_43 chr10:47084402-47084482 0.00035 49_[+2]_23 chr19:30375134-30375214 0.00042 35_[+2]_37 chr1:174054992-174055072 0.00042 45_[+2]_27 chr13:91849406-91849486 0.00042 18_[+2]_54 chr5:35066600-35066680 0.00042 59_[+2]_13 chr6:361701-361781 0.00046 26_[+2]_46 chr16:21554749-21554829 0.00046 65_[+2]_7 chr22:23329045-23329125 0.00054 40_[+2]_32 chr6:32261278-32261358 0.00054 60_[+2]_12 chr1:234876991-234877071 0.00054 37_[+2]_35 chr2:146102005-146102085 0.00054 61_[+2]_11 chr7:26285549-26285629 0.00054 43_[+2]_29 chr8:1761438-1761518 0.00054 39_[+2]_33 chr6:144648100-144648180 0.00054 3_[+2]_69 chr20:47131760-47131840 0.00061 4_[+2]_68 chr10:47047005-47047085 0.00061 58_[+2]_14 chr7:104574892-104574972 0.00061 63_[+2]_9 chr2:132281624-132281704 0.00063 34_[+2]_38 chr1:244875044-244875124 0.00067 70_[+2]_2 chr7:140183450-140183530 0.00074 60_[+2]_12 chr13:91828391-91828471 0.00081 41_[+2]_31 chr1:200388717-200388797 0.00081 62_[+2]_10 chr13:92103836-92103916 0.00081 25_[+2]_47 chr10:43342197-43342277 0.00081 47_[+2]_25 chr6:49982567-49982647 0.00081 49_[+2]_23 chr18:34042243-34042323 0.00096 31_[+2]_41 chr21:11138292-11138372 0.00096 72_[+2] chr22:23361601-23361681 0.00096 13_[+2]_59 chr13:90561400-90561480 0.001 49_[+2]_23 chr13:91345066-91345146 0.001 22_[+2]_50 chr1:229722886-229722966 0.0011 72_[+2] chr1:197812003-197812083 0.0011 49_[+2]_23 chr22:23405668-23405748 0.0013 9_[+2]_63 chr21:27178461-27178541 0.0013 6_[+2]_66 chr7:132859502-132859582 0.0015 72_[+2] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTYTCYCT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YTYTCYCT width=8 seqs=83 chr22:19139467-19139547 ( 41) CTCTCTCT 1 chr2:91778103-91778183 ( 16) CTCTCTCT 1 chr4:168021509-168021589 ( 49) CTCTCTCT 1 chr1:15427770-15427850 ( 25) CTCTCTCT 1 chr1:227747853-227747933 ( 11) CTCTCTCT 1 chr12:34427294-34427374 ( 60) CTCTCTCT 1 chr6:145198504-145198584 ( 73) CTCTCTCT 1 chr7:129887021-129887101 ( 66) CTCTCTCT 1 chr1:225079131-225079211 ( 12) CTCTCTCT 1 chr11:102341838-10234191 ( 29) CTCTCTCT 1 chr8:21153102-21153182 ( 67) CTTTCTCT 1 chr6:738956-739036 ( 57) CTTTCTCT 1 chr2:8330519-8330599 ( 45) CTTTCTCT 1 chr4:190527807-190527887 ( 22) CTTTCTCT 1 chr13:90617523-90617603 ( 1) CTTTCTCT 1 chr6:168202141-168202221 ( 61) CTCTCCCT 1 chr2:145429610-145429690 ( 65) TTCTCTCT 1 chr2:95611957-95612037 ( 24) TTCTCTCT 1 chr7:134318434-134318514 ( 29) CTCTCCCT 1 chr1:54123562-54123642 ( 21) CTCTCCCT 1 chr2:91785424-91785504 ( 15) CTTTCCCT 1 chr6:144204023-144204103 ( 42) TTTTCTCT 1 chr17:35195274-35195354 ( 27) TTTTCTCT 1 chr13:91919747-91919827 ( 57) CTTTCCCT 1 chr1:169756285-169756365 ( 16) CTTTCCCT 1 chr1:86622994-86623074 ( 4) TTTTCTCT 1 chr13:90853135-90853215 ( 56) TTTTCTCT 1 chr22:22970060-22970140 ( 64) TTTTCTCT 1 chr15:67104973-67105053 ( 62) TTTTCTCT 1 chr17:21555949-21556029 ( 12) CTCTGTCT 1 chr6:135216797-135216877 ( 33) TTCTCCCT 1 chr10:76549977-76550057 ( 35) CTCTGTCT 1 chr5:536650-536730 ( 40) TTCTCCCT 1 chr1:142898160-142898240 ( 6) TTCTCCCT 1 chr6:139388004-139388084 ( 39) TTCTCCCT 1 chr13:91093606-91093686 ( 66) CTCTGTCT 1 chr7:111749341-111749421 ( 38) TTCTCCCT 1 chr19:10705300-10705380 ( 41) TTCTCCCT 1 chr22:22962364-22962444 ( 15) CTCTGTCT 1 chr15:95395649-95395729 ( 54) CTTTGTCT 1 chr8:101857065-101857145 ( 4) CTTTGTCT 1 chr13:90785008-90785088 ( 10) CTTTGTCT 1 chr13:92121396-92121476 ( 49) CTCTGCCT 1 chr1:15713416-15713496 ( 25) CTCTGCCT 1 chr6:7325033-7325113 ( 55) CTCTCTTT 1 chr12:115720118-11572019 ( 40) CTTTCTTT 1 chr7:159127461-159127541 ( 73) CCTTCTCT 1 chr14:21096588-21096668 ( 30) TTCTGCCT 1 chr10:47084402-47084482 ( 50) CCTTCTCT 1 chr19:30375134-30375214 ( 36) CTCTCCTT 1 chr1:174054992-174055072 ( 46) TCCTCTCT 1 chr13:91849406-91849486 ( 19) TTCTCTTT 1 chr5:35066600-35066680 ( 60) CTCTCCTT 1 chr6:361701-361781 ( 27) CTCTTTCT 1 chr16:21554749-21554829 ( 66) CTCTTTCT 1 chr22:23329045-23329125 ( 41) CCTTCCCT 1 chr6:32261278-32261358 ( 61) TCTTCTCT 1 chr1:234876991-234877071 ( 38) TCTTCTCT 1 chr2:146102005-146102085 ( 62) CTTTCCTT 1 chr7:26285549-26285629 ( 44) CTTTCCTT 1 chr8:1761438-1761518 ( 40) CTTTCCTT 1 chr6:144648100-144648180 ( 4) CTTTCCTT 1 chr20:47131760-47131840 ( 5) TCCTCCCT 1 chr10:47047005-47047085 ( 59) TTCTCCTT 1 chr7:104574892-104574972 ( 64) TTCTCCTT 1 chr2:132281624-132281704 ( 35) CTTTTTCT 1 chr1:244875044-244875124 ( 71) CTCTTCCT 1 chr7:140183450-140183530 ( 61) CTTTGTTT 1 chr13:91828391-91828471 ( 42) TCCTGTCT 1 chr1:200388717-200388797 ( 63) CCCTGCCT 1 chr13:92103836-92103916 ( 26) TTCTGTTT 1 chr10:43342197-43342277 ( 48) CCCTGCCT 1 chr6:49982567-49982647 ( 50) TCCTGTCT 1 chr18:34042243-34042323 ( 32) TTTTGTTT 1 chr21:11138292-11138372 ( 73) TTTTGTTT 1 chr22:23361601-23361681 ( 14) TTTTGTTT 1 chr13:90561400-90561480 ( 50) TCCTGCCT 1 chr13:91345066-91345146 ( 23) TCCTGCCT 1 chr1:229722886-229722966 ( 73) TCCTCTTT 1 chr1:197812003-197812083 ( 50) TTTTTCCT 1 chr22:23405668-23405748 ( 10) CCTTTTCT 1 chr21:27178461-27178541 ( 7) TCCTTTCT 1 chr7:132859502-132859582 ( 73) TTTTTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTYTCYCT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.27554 E= 1.9e-009 -1302 125 -1302 64 -1302 -37 -1302 162 -1302 122 -1302 68 -1302 -1302 -1302 193 -1302 139 13 -145 -1302 59 -1302 125 -1302 165 -1302 -28 -1302 -1302 -1302 193 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTYTCYCT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 83 E= 1.9e-009 0.000000 0.590361 0.000000 0.409639 0.000000 0.192771 0.000000 0.807229 0.000000 0.578313 0.000000 0.421687 0.000000 0.000000 0.000000 1.000000 0.000000 0.650602 0.253012 0.096386 0.000000 0.373494 0.000000 0.626506 0.000000 0.783133 0.000000 0.216867 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTYTCYCT MEME-2 regular expression -------------------------------------------------------------------------------- [CT]T[CT]T[CG][TC][CT]T -------------------------------------------------------------------------------- Time 8.75 secs. ******************************************************************************** ******************************************************************************** MOTIF TCCWTCCT MEME-3 width = 8 sites = 29 llr = 243 E-value = 1.6e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCCWTCCT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::3:::1 pos.-specific C :a81:a9: probability G ::::2::: matrix T a:268:19 bits 2.1 1.9 * * 1.7 ** ** 1.5 ** *** Relative 1.3 *** **** Entropy 1.1 *** **** (12.1 bits) 0.8 *** **** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCCTTCCT consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCWTCCT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:115720118-11572019 51 1.84e-05 tttctttcct tccttcct tctttcttcc chr6:168202141-168202221 21 1.84e-05 gccttccctc tccttcct ctaccaacaa chr6:738956-739036 36 1.84e-05 tttctttttc tccttcct ttttcccttc chr6:139388004-139388084 1 1.84e-05 . TCCTTCCT TTCCTTGCCC chr7:129887021-129887101 33 1.84e-05 tccttttctt tccttcct ttcttttttt chr7:134318434-134318514 44 1.84e-05 ccttcctgtg tccttcct gcccttcttt chr19:30375134-30375214 1 1.84e-05 . tccttcct tcttccttct chr1:174054992-174055072 72 1.84e-05 tttaattcct tccttcct t chr13:90617523-90617603 30 1.84e-05 ccctttctct tccttcct tttcttttcc chr2:8330519-8330599 25 3.64e-05 ttttctttct tccatcct ccctcccttt chr10:43342197-43342277 61 5.25e-05 tgcctgattc tcctgcct cagcctgccg chr8:21153102-21153182 30 7.19e-05 Cccccttctt tctttcct ttccctctcc chr17:35195274-35195354 14 7.19e-05 ctcctcttct tctttcct tgtgcttttc chr13:90853135-90853215 7 7.19e-05 tccctt tctttcct tactgagtat chr6:145198504-145198584 44 7.19e-05 CCATTAATAG TCTTTCCT TGTTTCTGCC chr1:15427770-15427850 36 8.94e-05 tctctctgtc tccctcCT CCATCCACCT chr4:190527807-190527887 12 8.94e-05 ccacttcttt tccctcct ccctttctct chr8:1761438-1761518 10 8.94e-05 TTTCCCACG TCCCTCCT CATGTGGTCC chr22:19139467-19139547 28 1.05e-04 caagtgcacc tccagcct ggcctctctc chr7:149217674-149217754 28 1.05e-04 gccactgcac tccagcct ggcgacagag chr1:143536886-143536966 59 1.05e-04 gccactgtac tccagcct ggtaacagag chr13:91093606-91093686 43 1.05e-04 actccagcat tccagcct ggtgatagag chr7:6664115-6664195 31 1.23e-04 gctcaagcaa tccttcca cctcagcctc chr14:21096588-21096668 73 1.42e-04 ATCCTGAACC TCTATCCT chr2:132281624-132281704 65 1.62e-04 tcagtcgaat tccttctt ctgaggaa chr17:36193968-36194048 6 1.79e-04 tctac tccatcca cacacacact chr7:26285549-26285629 56 1.79e-04 ttccttgtcc tccatcca tagttaaccc chr1:53099616-53099696 62 2.49e-04 AACAGCAACT TCCATCTT CAAACATTCA chr13:91919747-91919827 23 2.68e-04 gcacctcagc ttcttcct gtgagttctc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCWTCCT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:115720118-11572019 1.8e-05 50_[+3]_22 chr6:168202141-168202221 1.8e-05 20_[+3]_52 chr6:738956-739036 1.8e-05 35_[+3]_37 chr6:139388004-139388084 1.8e-05 [+3]_72 chr7:129887021-129887101 1.8e-05 32_[+3]_40 chr7:134318434-134318514 1.8e-05 43_[+3]_29 chr19:30375134-30375214 1.8e-05 [+3]_72 chr1:174054992-174055072 1.8e-05 71_[+3]_1 chr13:90617523-90617603 1.8e-05 29_[+3]_43 chr2:8330519-8330599 3.6e-05 24_[+3]_48 chr10:43342197-43342277 5.3e-05 60_[+3]_12 chr8:21153102-21153182 7.2e-05 29_[+3]_43 chr17:35195274-35195354 7.2e-05 13_[+3]_59 chr13:90853135-90853215 7.2e-05 6_[+3]_66 chr6:145198504-145198584 7.2e-05 43_[+3]_29 chr1:15427770-15427850 8.9e-05 35_[+3]_37 chr4:190527807-190527887 8.9e-05 11_[+3]_61 chr8:1761438-1761518 8.9e-05 9_[+3]_63 chr22:19139467-19139547 0.00011 27_[+3]_45 chr7:149217674-149217754 0.00011 27_[+3]_45 chr1:143536886-143536966 0.00011 58_[+3]_14 chr13:91093606-91093686 0.00011 42_[+3]_30 chr7:6664115-6664195 0.00012 30_[+3]_42 chr14:21096588-21096668 0.00014 72_[+3] chr2:132281624-132281704 0.00016 64_[+3]_8 chr17:36193968-36194048 0.00018 5_[+3]_67 chr7:26285549-26285629 0.00018 55_[+3]_17 chr1:53099616-53099696 0.00025 61_[+3]_11 chr13:91919747-91919827 0.00027 22_[+3]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCWTCCT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCCWTCCT width=8 seqs=29 chr12:115720118-11572019 ( 51) TCCTTCCT 1 chr6:168202141-168202221 ( 21) TCCTTCCT 1 chr6:738956-739036 ( 36) TCCTTCCT 1 chr6:139388004-139388084 ( 1) TCCTTCCT 1 chr7:129887021-129887101 ( 33) TCCTTCCT 1 chr7:134318434-134318514 ( 44) TCCTTCCT 1 chr19:30375134-30375214 ( 1) TCCTTCCT 1 chr1:174054992-174055072 ( 72) TCCTTCCT 1 chr13:90617523-90617603 ( 30) TCCTTCCT 1 chr2:8330519-8330599 ( 25) TCCATCCT 1 chr10:43342197-43342277 ( 61) TCCTGCCT 1 chr8:21153102-21153182 ( 30) TCTTTCCT 1 chr17:35195274-35195354 ( 14) TCTTTCCT 1 chr13:90853135-90853215 ( 7) TCTTTCCT 1 chr6:145198504-145198584 ( 44) TCTTTCCT 1 chr1:15427770-15427850 ( 36) TCCCTCCT 1 chr4:190527807-190527887 ( 12) TCCCTCCT 1 chr8:1761438-1761518 ( 10) TCCCTCCT 1 chr22:19139467-19139547 ( 28) TCCAGCCT 1 chr7:149217674-149217754 ( 28) TCCAGCCT 1 chr1:143536886-143536966 ( 59) TCCAGCCT 1 chr13:91093606-91093686 ( 43) TCCAGCCT 1 chr7:6664115-6664195 ( 31) TCCTTCCA 1 chr14:21096588-21096668 ( 73) TCTATCCT 1 chr2:132281624-132281704 ( 65) TCCTTCTT 1 chr17:36193968-36194048 ( 6) TCCATCCA 1 chr7:26285549-26285629 ( 56) TCCATCCA 1 chr1:53099616-53099696 ( 62) TCCATCTT 1 chr13:91919747-91919827 ( 23) TTCTTCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCWTCCT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.93691 E= 1.6e+002 -1150 -1150 -1150 193 -1150 196 -1150 -293 -1150 173 -1150 -61 27 -127 -1150 116 -1150 -1150 -42 166 -1150 201 -1150 -1150 -1150 190 -1150 -193 -132 -1150 -1150 177 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCWTCCT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 1.6e+002 0.000000 0.000000 0.000000 1.000000 0.000000 0.965517 0.000000 0.034483 0.000000 0.827586 0.000000 0.172414 0.310345 0.103448 0.000000 0.586207 0.000000 0.000000 0.172414 0.827586 0.000000 1.000000 0.000000 0.000000 0.000000 0.931034 0.000000 0.068966 0.103448 0.000000 0.000000 0.896552 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCWTCCT MEME-3 regular expression -------------------------------------------------------------------------------- TCC[TA]TCCT -------------------------------------------------------------------------------- Time 12.32 secs. ******************************************************************************** ******************************************************************************** MOTIF RGWGRVDG MEME-4 width = 8 sites = 59 llr = 423 E-value = 9.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif RGWGRVDG MEME-4 Description -------------------------------------------------------------------------------- Simplified A 4:6:433: pos.-specific C :::::3:: probability G 6a:a642a matrix T ::4:::4: bits 2.1 * * * 1.9 * * * 1.7 * * * 1.5 * * * Relative 1.3 * * * Entropy 1.1 ***** * (10.3 bits) 0.8 ***** * 0.6 ***** * 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGAGGGTG consensus A T AAA sequence CG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGWGRVDG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:189070068-189070148 23 1.99e-05 aGAAAAGGTT ggagggag tgagagagga chr14:64212170-64212250 37 1.99e-05 aaggaaggag ggagggag gaagggagga chr19:33832009-33832089 51 1.99e-05 aagaaggagg ggagggag agagggaggg chr1:234876991-234877071 17 3.89e-05 agatggtgga ggtgggtg taatgatttc chr2:11090112-11090192 43 3.89e-05 gaaatggatg ggtgggtg agtgggtgaa chr6:6620127-6620207 15 3.89e-05 taggagaaag ggaggggg agaaagaCTA chr7:96741276-96741356 20 9.36e-05 cagctactgt ggaggctg aggcagaaga chr13:90725755-90725835 17 9.36e-05 cagctactga ggaggctg aggcacgaga chr4:108462805-108462885 28 9.36e-05 ggttgcagga ggagagtg ggagaaggag chr1:169756285-169756365 57 9.36e-05 agtgtgcagt gGTGGGAG GCTCACACAG chr22:17066022-17066102 49 9.36e-05 cagctactag ggaggctg agacaggaga chr13:91202373-91202453 1 9.36e-05 . ggaggctg aggcaggaga chr22:22988569-22988649 3 9.36e-05 CT GGAGGCTG AGGACCAGGC chr22:20995124-20995204 57 9.36e-05 cagctacttg ggaggctg aggcaggaga chr13:90816421-90816501 30 9.36e-05 cagctactca ggaggctg acggaggcga chr9:66455410-66455490 73 1.05e-04 agggagctag agagggag chr16:5427552-5427632 36 1.46e-04 ggagatgggg ggagagag agagaaagaa chr10:47014227-47014307 46 1.46e-04 aagagacaga ggagagag agaggggaac chr6:106370488-106370568 66 1.46e-04 aagaagaaca ggaggaag TTAGGTA chr1:180228264-180228344 42 1.46e-04 GCACAGTGTA GGAGGCAG CGAGCAGGTG chr22:22971821-22971901 16 1.46e-04 AGCGTTCCTG GGTGGGGG ACATGTGGCT chr19:51586696-51586776 44 1.68e-04 agagtgacag agaggggg agagcaagag chr22:21407271-21407351 54 1.68e-04 AGAGCCATTA AGTGGGTG TGGAGTCCGA chr2:149384125-149384205 19 1.68e-04 CTTGGAGTGC AGTGGGTG TGTGCTATGA chr22:23012300-23012380 72 1.68e-04 cccgagttaa agtgggtg a chr1:23096482-23096562 28 2.31e-04 TAGATAGATG GGTGAGTG GAAGGCAAGA chr2:177000937-177001017 16 2.31e-04 AAGAAACAGA GGAGGCGG GGAGGGAGGG chr7:522278-522358 15 2.31e-04 GGAACAGTTG GGTGGATG GGTAGGTGTG chr1:59608554-59608634 41 2.31e-04 ggaatggatg ggtggatg gataacgtag chr10:46967404-46967484 11 2.80e-04 TGCCTGCTCC AGAGGCTG TACCTGAAAG chr22:19555996-19556076 33 2.80e-04 tgctggtgaa agagagtg gaagctGGAG chr13:90489631-90489711 17 2.80e-04 agggatacta agagagtg cagtaacatg chr13:91239354-91239434 49 3.38e-04 agccgcgcat ggtggcag gtacctgtag chr5:73561259-73561339 68 3.38e-04 TTTGGTGACT GGTGAGAG AGAAA chr5:74537992-74538072 32 3.38e-04 aatcataggg ggtggaag ttaggttttc chr1:170534322-170534402 4 3.85e-04 aaa agagagag aaagaaagaa chr1:234461746-234461826 38 3.85e-04 aagaagagga agaggaag aggaagagga chr1:143536886-143536966 73 3.85e-04 gcctggtaac agagagag chr19:30132612-30132692 73 3.85e-04 aagaagaaaa agaggaag chr21:11167785-11167865 45 3.85e-04 agcaccagaa agaggcag ccaagccagg chr5:14652627-14652707 60 3.85e-04 GACATCCTGG AGAGGCAG GCGCAAGGGC chr13:92401039-92401119 56 4.39e-04 gacaattctg ggtggagg aaactggatg chr13:90946215-90946295 36 5.10e-04 aacagaatgt agaggagg agtcagctca chr1:86622994-86623074 46 5.10e-04 AATCACACTT AGAGGAGG CCTTCATTAC chr13:91781246-91781326 15 5.10e-04 AAAGCCTGGA AGTGAGTG AGTTAGGCAG chr13:91828391-91828471 71 5.57e-04 GGGCCTGCCA GGTGACTG GG chr1:206801998-206802078 34 5.57e-04 agaagaagta ggagaagg agaagaagga chr22:23278561-23278641 23 5.57e-04 AGATGGCCTT GGAGAAGG GTCATAGACA chr3:191138272-191138352 40 5.57e-04 aagcagaaga ggtgaatg gttgagagtg chr5:567629-567709 20 6.22e-04 CAGGCCATGC AGAGAATG CCCAGAACAA chr22:21385427-21385507 53 6.22e-04 ATGACAATGA AGAGAATG ACAAGCAGGC chr1:228259975-228260055 43 6.22e-04 TAGTGGGGAT AGTGGAAG GGAATAGTGT chr6:158163246-158163326 14 7.08e-04 AGCATCTGAG AGTGAGGG CATGTAAGGG chr15:95395649-95395729 66 7.08e-04 ttgtcttcta agtgaggg tgtttag chr7:137881329-137881409 53 7.08e-04 ATAGCAAAAA AGTGAGGG GGAGTTAAAA chr7:158386833-158386913 18 7.30e-04 tggtggttgg ggtgacgg tggtaatcat chr13:91059605-91059685 1 7.30e-04 . ggtgaagg ggaagccagc chr1:22669097-22669177 70 8.11e-04 GGAAACGCGG AGTGACAG AAA chr1:67572209-67572289 26 8.47e-04 cagctactca ggaggttg agacaggaga -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGWGRVDG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:189070068-189070148 2e-05 22_[+4]_50 chr14:64212170-64212250 2e-05 36_[+4]_36 chr19:33832009-33832089 2e-05 50_[+4]_22 chr1:234876991-234877071 3.9e-05 16_[+4]_56 chr2:11090112-11090192 3.9e-05 42_[+4]_30 chr6:6620127-6620207 3.9e-05 14_[+4]_58 chr7:96741276-96741356 9.4e-05 19_[+4]_53 chr13:90725755-90725835 9.4e-05 16_[+4]_56 chr4:108462805-108462885 9.4e-05 27_[+4]_45 chr1:169756285-169756365 9.4e-05 56_[+4]_16 chr22:17066022-17066102 9.4e-05 48_[+4]_24 chr13:91202373-91202453 9.4e-05 [+4]_72 chr22:22988569-22988649 9.4e-05 2_[+4]_70 chr22:20995124-20995204 9.4e-05 56_[+4]_16 chr13:90816421-90816501 9.4e-05 29_[+4]_43 chr9:66455410-66455490 0.0001 72_[+4] chr16:5427552-5427632 0.00015 35_[+4]_37 chr10:47014227-47014307 0.00015 45_[+4]_27 chr6:106370488-106370568 0.00015 65_[+4]_7 chr1:180228264-180228344 0.00015 41_[+4]_31 chr22:22971821-22971901 0.00015 15_[+4]_57 chr19:51586696-51586776 0.00017 43_[+4]_29 chr22:21407271-21407351 0.00017 53_[+4]_19 chr2:149384125-149384205 0.00017 18_[+4]_54 chr22:23012300-23012380 0.00017 71_[+4]_1 chr1:23096482-23096562 0.00023 27_[+4]_45 chr2:177000937-177001017 0.00023 15_[+4]_57 chr7:522278-522358 0.00023 14_[+4]_58 chr1:59608554-59608634 0.00023 40_[+4]_32 chr10:46967404-46967484 0.00028 10_[+4]_62 chr22:19555996-19556076 0.00028 32_[+4]_40 chr13:90489631-90489711 0.00028 16_[+4]_56 chr13:91239354-91239434 0.00034 48_[+4]_24 chr5:73561259-73561339 0.00034 67_[+4]_5 chr5:74537992-74538072 0.00034 31_[+4]_41 chr1:170534322-170534402 0.00038 3_[+4]_69 chr1:234461746-234461826 0.00038 37_[+4]_35 chr1:143536886-143536966 0.00038 72_[+4] chr19:30132612-30132692 0.00038 72_[+4] chr21:11167785-11167865 0.00038 44_[+4]_28 chr5:14652627-14652707 0.00038 59_[+4]_13 chr13:92401039-92401119 0.00044 55_[+4]_17 chr13:90946215-90946295 0.00051 35_[+4]_37 chr1:86622994-86623074 0.00051 45_[+4]_27 chr13:91781246-91781326 0.00051 14_[+4]_58 chr13:91828391-91828471 0.00056 70_[+4]_2 chr1:206801998-206802078 0.00056 33_[+4]_39 chr22:23278561-23278641 0.00056 22_[+4]_50 chr3:191138272-191138352 0.00056 39_[+4]_33 chr5:567629-567709 0.00062 19_[+4]_53 chr22:21385427-21385507 0.00062 52_[+4]_20 chr1:228259975-228260055 0.00062 42_[+4]_30 chr6:158163246-158163326 0.00071 13_[+4]_59 chr15:95395649-95395729 0.00071 65_[+4]_7 chr7:137881329-137881409 0.00071 52_[+4]_20 chr7:158386833-158386913 0.00073 17_[+4]_55 chr13:91059605-91059685 0.00073 [+4]_72 chr1:22669097-22669177 0.00081 69_[+4]_3 chr1:67572209-67572289 0.00085 25_[+4]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGWGRVDG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RGWGRVDG width=8 seqs=59 chr1:189070068-189070148 ( 23) GGAGGGAG 1 chr14:64212170-64212250 ( 37) GGAGGGAG 1 chr19:33832009-33832089 ( 51) GGAGGGAG 1 chr1:234876991-234877071 ( 17) GGTGGGTG 1 chr2:11090112-11090192 ( 43) GGTGGGTG 1 chr6:6620127-6620207 ( 15) GGAGGGGG 1 chr7:96741276-96741356 ( 20) GGAGGCTG 1 chr13:90725755-90725835 ( 17) GGAGGCTG 1 chr4:108462805-108462885 ( 28) GGAGAGTG 1 chr1:169756285-169756365 ( 57) GGTGGGAG 1 chr22:17066022-17066102 ( 49) GGAGGCTG 1 chr13:91202373-91202453 ( 1) GGAGGCTG 1 chr22:22988569-22988649 ( 3) GGAGGCTG 1 chr22:20995124-20995204 ( 57) GGAGGCTG 1 chr13:90816421-90816501 ( 30) GGAGGCTG 1 chr9:66455410-66455490 ( 73) AGAGGGAG 1 chr16:5427552-5427632 ( 36) GGAGAGAG 1 chr10:47014227-47014307 ( 46) GGAGAGAG 1 chr6:106370488-106370568 ( 66) GGAGGAAG 1 chr1:180228264-180228344 ( 42) GGAGGCAG 1 chr22:22971821-22971901 ( 16) GGTGGGGG 1 chr19:51586696-51586776 ( 44) AGAGGGGG 1 chr22:21407271-21407351 ( 54) AGTGGGTG 1 chr2:149384125-149384205 ( 19) AGTGGGTG 1 chr22:23012300-23012380 ( 72) AGTGGGTG 1 chr1:23096482-23096562 ( 28) GGTGAGTG 1 chr2:177000937-177001017 ( 16) GGAGGCGG 1 chr7:522278-522358 ( 15) GGTGGATG 1 chr1:59608554-59608634 ( 41) GGTGGATG 1 chr10:46967404-46967484 ( 11) AGAGGCTG 1 chr22:19555996-19556076 ( 33) AGAGAGTG 1 chr13:90489631-90489711 ( 17) AGAGAGTG 1 chr13:91239354-91239434 ( 49) GGTGGCAG 1 chr5:73561259-73561339 ( 68) GGTGAGAG 1 chr5:74537992-74538072 ( 32) GGTGGAAG 1 chr1:170534322-170534402 ( 4) AGAGAGAG 1 chr1:234461746-234461826 ( 38) AGAGGAAG 1 chr1:143536886-143536966 ( 73) AGAGAGAG 1 chr19:30132612-30132692 ( 73) AGAGGAAG 1 chr21:11167785-11167865 ( 45) AGAGGCAG 1 chr5:14652627-14652707 ( 60) AGAGGCAG 1 chr13:92401039-92401119 ( 56) GGTGGAGG 1 chr13:90946215-90946295 ( 36) AGAGGAGG 1 chr1:86622994-86623074 ( 46) AGAGGAGG 1 chr13:91781246-91781326 ( 15) AGTGAGTG 1 chr13:91828391-91828471 ( 71) GGTGACTG 1 chr1:206801998-206802078 ( 34) GGAGAAGG 1 chr22:23278561-23278641 ( 23) GGAGAAGG 1 chr3:191138272-191138352 ( 40) GGTGAATG 1 chr5:567629-567709 ( 20) AGAGAATG 1 chr22:21385427-21385507 ( 53) AGAGAATG 1 chr1:228259975-228260055 ( 43) AGTGGAAG 1 chr6:158163246-158163326 ( 14) AGTGAGGG 1 chr15:95395649-95395729 ( 66) AGTGAGGG 1 chr7:137881329-137881409 ( 53) AGTGAGGG 1 chr7:158386833-158386913 ( 18) GGTGACGG 1 chr13:91059605-91059685 ( 1) GGTGAAGG 1 chr1:22669097-22669177 ( 70) AGTGACAG 1 chr1:67572209-67572289 ( 26) GGAGGTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGWGRVDG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.9683 E= 9.5e+003 66 -1253 136 -1253 -1253 -1253 212 -1253 120 -1253 -1253 63 -1253 -1253 212 -1253 53 -1253 144 -1253 7 12 94 -395 39 -1253 4 69 -1253 -1253 212 -1253 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGWGRVDG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 59 E= 9.5e+003 0.406780 0.000000 0.593220 0.000000 0.000000 0.000000 1.000000 0.000000 0.593220 0.000000 0.000000 0.406780 0.000000 0.000000 1.000000 0.000000 0.372881 0.000000 0.627119 0.000000 0.271186 0.271186 0.440678 0.016949 0.338983 0.000000 0.237288 0.423729 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGWGRVDG MEME-4 regular expression -------------------------------------------------------------------------------- [GA]G[AT]G[GA][GAC][TAG]G -------------------------------------------------------------------------------- Time 15.83 secs. ******************************************************************************** ******************************************************************************** MOTIF CASCYHCH MEME-5 width = 8 sites = 44 llr = 332 E-value = 4.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CASCYHCH MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a:::5:3 pos.-specific C a:4a53a3 probability G ::6::::: matrix T ::::53:4 bits 2.1 1.9 ** * * 1.7 ** * * 1.5 ** * * Relative 1.3 ** * * Entropy 1.1 ***** * (10.9 bits) 0.8 ***** * 0.6 ***** * 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAGCTACT consensus C CC C sequence T A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASCYHCH MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:96741276-96741356 10 1.63e-05 ctgtagtcc cagctact gtggaggctg chr13:90725755-90725835 7 1.63e-05 tagtcc cagctact gaggaggctg chr22:17066022-17066102 39 1.63e-05 cctgtaatct cagctact agggaggctg chr6:87856728-87856808 58 1.63e-05 tctgtaatcc cagctact cgggaagctg chr1:67572209-67572289 16 1.63e-05 gtctgtagtc cagctact caggaggttg chr22:20995124-20995204 47 1.63e-05 cctgtaatcc cagctact tgggaggctg chr1:244875044-244875124 49 1.63e-05 ccagttctac cagctact ccccttcatt chr13:90816421-90816501 20 1.63e-05 cctgtagtca cagctact caggaggctg chr20:47131760-47131840 68 4.73e-05 cccaggttgc cagctacc agacc chr13:92294759-92294839 33 6.20e-05 tcaacattgt cagccacc acagaaaggt chr13:91345066-91345146 31 6.20e-05 tctcctgcct cagccacc cgagtagctg chr21:36815028-36815108 50 7.80e-05 ACGTGCCCCA CAGCTACA CACACTCACC chr1:165368385-165368465 23 1.09e-04 GAAGACAGCC CAGCTCCT GCCAAGCTTC chr3:191138272-191138352 4 1.09e-04 cag cagccaca tcggcaaccc chr22:22962364-22962444 55 1.09e-04 TCCTAGGGAT CAGCTCCT CAGTTTCAAG chr22:22438594-22438674 8 1.90e-04 TCAGGGT CAGCTCCC TGGGTAGGGA chr1:225079131-225079211 46 1.90e-04 ctatcagtct cacccact ctctcctcac chr19:10705300-10705380 63 1.90e-04 caacccctgg cacccact cttcttcttc chr22:21325841-21325921 43 2.37e-04 TGCATCTCGG CAGCCTCT CTGGGTTCTT chr8:49638826-49638906 25 2.84e-04 tccatccatc cacccacc tatccatcca chr13:91818701-91818781 52 2.84e-04 TTAGACTATG CAGCTCCA CTTTCCTCCC chr7:141848031-141848111 67 2.84e-04 ccatcaccac cacccacc atgacc chr7:104574892-104574972 56 2.84e-04 TACACTTTCC CACCCACC TTCTCCTTAA chr4:190527807-190527887 62 2.84e-04 tctccctccc cagcttcc tttccctcca chr12:25544048-25544128 54 3.31e-04 GGGTGGCAAT CAGCCCCA AGACACAGCA chr13:90561400-90561480 58 3.31e-04 tctcctgcct cagcctcc caagtagctg chr7:132859502-132859582 7 3.31e-04 ctgcat cagcctcc caaagtactg chr1:208053664-208053744 63 3.31e-04 ccacctgcct cagcctcc cagagtgctg chr7:158643123-158643203 53 3.31e-04 acgcagtgtg cagcccca gccaggcctc chr6:144204023-144204103 54 3.81e-04 TTCTCTTTGC CACCTCCT AACTCCCACA chr1:86622994-86623074 20 3.81e-04 CTACCCTTTT CACCCACA TCTTCTGAAA chr17:36193968-36194048 48 3.81e-04 tacaatctcc cacccaca ctcacaatcc chr13:81462276-81462356 44 3.81e-04 TCCTGTCAAG CAGCTTCA TGGACACGTT chr16:84063927-84064007 10 3.81e-04 CTAACTCAT CACCTCCT GTTTTTACCA chr2:73400133-73400213 17 3.81e-04 AATacatgca cacccaca ctcagcagac chr1:54123562-54123642 31 4.12e-04 CTCTCCCTTT CAGCCTCA TCCTCTCAGC chr18:23798610-23798690 61 4.12e-04 gggctcactg cagcctca acctcctggg chr17:21555949-21556029 33 4.46e-04 CTGCATCCTT CACCTTCT ACATCAGGAA chr13:91393562-91393642 53 4.46e-04 ctgcaacctc cacctccc aggtccaacc chr22:22795818-22795898 33 4.46e-04 ctacaacctc cacctccc agccgcctgc chr10:46997399-46997479 33 4.46e-04 TCCACCTGAA CACCTTCT TGCTTCTCTC chr10:47084402-47084482 31 4.46e-04 cctcttctct cacctccc tgctccctgc chr1:227747853-227747933 53 4.79e-04 CTAGTtccct caccctct ctctttctct chr3:13972947-13973027 20 5.13e-04 TCATCTATAC CACCTCCA TCAACTCAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASCYHCH MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:96741276-96741356 1.6e-05 9_[+5]_63 chr13:90725755-90725835 1.6e-05 6_[+5]_66 chr22:17066022-17066102 1.6e-05 38_[+5]_34 chr6:87856728-87856808 1.6e-05 57_[+5]_15 chr1:67572209-67572289 1.6e-05 15_[+5]_57 chr22:20995124-20995204 1.6e-05 46_[+5]_26 chr1:244875044-244875124 1.6e-05 48_[+5]_24 chr13:90816421-90816501 1.6e-05 19_[+5]_53 chr20:47131760-47131840 4.7e-05 67_[+5]_5 chr13:92294759-92294839 6.2e-05 32_[+5]_40 chr13:91345066-91345146 6.2e-05 30_[+5]_42 chr21:36815028-36815108 7.8e-05 49_[+5]_23 chr1:165368385-165368465 0.00011 22_[+5]_50 chr3:191138272-191138352 0.00011 3_[+5]_69 chr22:22962364-22962444 0.00011 54_[+5]_18 chr22:22438594-22438674 0.00019 7_[+5]_65 chr1:225079131-225079211 0.00019 45_[+5]_27 chr19:10705300-10705380 0.00019 62_[+5]_10 chr22:21325841-21325921 0.00024 42_[+5]_30 chr8:49638826-49638906 0.00028 24_[+5]_48 chr13:91818701-91818781 0.00028 51_[+5]_21 chr7:141848031-141848111 0.00028 66_[+5]_6 chr7:104574892-104574972 0.00028 55_[+5]_17 chr4:190527807-190527887 0.00028 61_[+5]_11 chr12:25544048-25544128 0.00033 53_[+5]_19 chr13:90561400-90561480 0.00033 57_[+5]_15 chr7:132859502-132859582 0.00033 6_[+5]_66 chr1:208053664-208053744 0.00033 62_[+5]_10 chr7:158643123-158643203 0.00033 52_[+5]_20 chr6:144204023-144204103 0.00038 53_[+5]_19 chr1:86622994-86623074 0.00038 19_[+5]_53 chr17:36193968-36194048 0.00038 47_[+5]_25 chr13:81462276-81462356 0.00038 43_[+5]_29 chr16:84063927-84064007 0.00038 9_[+5]_63 chr2:73400133-73400213 0.00038 16_[+5]_56 chr1:54123562-54123642 0.00041 30_[+5]_42 chr18:23798610-23798690 0.00041 60_[+5]_12 chr17:21555949-21556029 0.00045 32_[+5]_40 chr13:91393562-91393642 0.00045 52_[+5]_20 chr22:22795818-22795898 0.00045 32_[+5]_40 chr10:46997399-46997479 0.00045 32_[+5]_40 chr10:47084402-47084482 0.00045 30_[+5]_42 chr1:227747853-227747933 0.00048 52_[+5]_20 chr3:13972947-13973027 0.00051 19_[+5]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASCYHCH MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CASCYHCH width=8 seqs=44 chr7:96741276-96741356 ( 10) CAGCTACT 1 chr13:90725755-90725835 ( 7) CAGCTACT 1 chr22:17066022-17066102 ( 39) CAGCTACT 1 chr6:87856728-87856808 ( 58) CAGCTACT 1 chr1:67572209-67572289 ( 16) CAGCTACT 1 chr22:20995124-20995204 ( 47) CAGCTACT 1 chr1:244875044-244875124 ( 49) CAGCTACT 1 chr13:90816421-90816501 ( 20) CAGCTACT 1 chr20:47131760-47131840 ( 68) CAGCTACC 1 chr13:92294759-92294839 ( 33) CAGCCACC 1 chr13:91345066-91345146 ( 31) CAGCCACC 1 chr21:36815028-36815108 ( 50) CAGCTACA 1 chr1:165368385-165368465 ( 23) CAGCTCCT 1 chr3:191138272-191138352 ( 4) CAGCCACA 1 chr22:22962364-22962444 ( 55) CAGCTCCT 1 chr22:22438594-22438674 ( 8) CAGCTCCC 1 chr1:225079131-225079211 ( 46) CACCCACT 1 chr19:10705300-10705380 ( 63) CACCCACT 1 chr22:21325841-21325921 ( 43) CAGCCTCT 1 chr8:49638826-49638906 ( 25) CACCCACC 1 chr13:91818701-91818781 ( 52) CAGCTCCA 1 chr7:141848031-141848111 ( 67) CACCCACC 1 chr7:104574892-104574972 ( 56) CACCCACC 1 chr4:190527807-190527887 ( 62) CAGCTTCC 1 chr12:25544048-25544128 ( 54) CAGCCCCA 1 chr13:90561400-90561480 ( 58) CAGCCTCC 1 chr7:132859502-132859582 ( 7) CAGCCTCC 1 chr1:208053664-208053744 ( 63) CAGCCTCC 1 chr7:158643123-158643203 ( 53) CAGCCCCA 1 chr6:144204023-144204103 ( 54) CACCTCCT 1 chr1:86622994-86623074 ( 20) CACCCACA 1 chr17:36193968-36194048 ( 48) CACCCACA 1 chr13:81462276-81462356 ( 44) CAGCTTCA 1 chr16:84063927-84064007 ( 10) CACCTCCT 1 chr2:73400133-73400213 ( 17) CACCCACA 1 chr1:54123562-54123642 ( 31) CAGCCTCA 1 chr18:23798610-23798690 ( 61) CAGCCTCA 1 chr17:21555949-21556029 ( 33) CACCTTCT 1 chr13:91393562-91393642 ( 53) CACCTCCC 1 chr22:22795818-22795898 ( 33) CACCTCCC 1 chr10:46997399-46997479 ( 33) CACCTTCT 1 chr10:47084402-47084482 ( 31) CACCTCCC 1 chr1:227747853-227747933 ( 53) CACCCTCT 1 chr3:13972947-13973027 ( 20) CACCTCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASCYHCH MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2284 E= 4.1e+004 -1210 201 -1210 -1210 195 -1210 -1210 -1210 -1210 63 141 -1210 -1210 201 -1210 -1210 -1210 87 -1210 105 89 13 -1210 -7 -1210 201 -1210 -1210 8 35 -1210 64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASCYHCH MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 44 E= 4.1e+004 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.386364 0.613636 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.454545 0.000000 0.545455 0.477273 0.272727 0.000000 0.250000 0.000000 1.000000 0.000000 0.000000 0.272727 0.318182 0.000000 0.409091 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASCYHCH MEME-5 regular expression -------------------------------------------------------------------------------- CA[GC]C[TC][ACT]C[TCA] -------------------------------------------------------------------------------- Time 19.25 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:23240574-23240654 1.77e-02 66_[+1(9.78e-05)]_6 chr13:91059605-91059685 5.15e-02 80 chr5:35066600-35066680 2.61e-03 62_[+3(1.84e-05)]_10 chr13:91651404-91651484 3.15e-02 80 chr1:108754594-108754674 7.41e-01 80 chr6:28039847-28039927 1.06e-02 4_[+1(5.17e-05)]_68 chr22:22962364-22962444 3.98e-03 80 chr13:91826291-91826371 2.81e-01 80 chr4:122668969-122669049 7.61e-01 80 chr19:33832009-33832089 4.34e-03 16_[+1(5.17e-05)]_4_[+1(2.63e-05)]_\ 14_[+4(1.99e-05)]_22 chr10:46988761-46988841 6.89e-01 80 chr11:102341838-10234191 1.46e-03 28_[+2(1.84e-05)]_44 chr18:23798610-23798690 2.07e-02 80 chr13:91286089-91286169 5.77e-01 80 chr13:90617523-90617603 4.33e-03 [+2(3.78e-05)]_2_[+2(7.47e-05)]_3_\ [+2(3.78e-05)]_[+3(1.84e-05)]_43 chr1:115306059-115306139 1.68e-01 80 chr13:90816421-90816501 3.81e-03 19_[+5(1.63e-05)]_2_[+4(9.36e-05)]_\ 43 chr20:35510143-35510223 3.29e-01 80 chr16:59365915-59365995 1.00e+00 80 chr1:244875044-244875124 2.11e-03 48_[+5(1.63e-05)]_24 chr13:91849406-91849486 1.11e-01 80 chr9:126804083-126804163 9.98e-01 80 chr3:191138272-191138352 1.13e-02 80 chr22:23281699-23281779 5.25e-01 80 chr8:54780186-54780266 2.66e-02 34_[+3(1.84e-05)]_[+3(1.84e-05)]_\ [+3(1.84e-05)]_[+3(1.84e-05)]_[+3(1.84e-05)]_6 chr21:36815028-36815108 3.15e-01 49_[+5(7.80e-05)]_23 chr1:197812003-197812083 8.59e-02 80 chr6:7325033-7325113 4.69e-04 10_[+1(7.52e-05)]_62 chr7:137881329-137881409 1.16e-01 80 chr7:131197147-131197227 5.16e-01 80 chr13:90785008-90785088 4.45e-02 80 chr22:20995124-20995204 1.02e-04 46_[+5(1.63e-05)]_2_[+4(9.36e-05)]_\ [+1(5.17e-05)]_8 chr6:149875171-149875251 3.86e-01 80 chr2:409630-409710 4.55e-01 80 chr1:235025783-235025863 1.47e-01 80 chr7:140183450-140183530 6.15e-01 80 chr1:55163595-55163675 4.13e-01 80 chr21:27178461-27178541 1.30e-01 80 chr1:22669097-22669177 1.98e-01 80 chr16:21554749-21554829 1.18e-01 80 chr1:174054992-174055072 1.40e-02 67_[+3(1.84e-05)]_5 chr1:110402193-110402273 6.33e-01 80 chr1:186623911-186623991 3.31e-01 80 chr1:143540668-143540748 1.65e-02 42_[+1(2.63e-05)]_30 chr19:30375134-30375214 1.54e-02 [+3(1.84e-05)]_72 chr19:10705300-10705380 2.45e-03 80 chr6:144648100-144648180 8.90e-02 80 chr14:64212170-64212250 4.34e-03 15_[+1(2.63e-05)]_[+1(2.63e-05)]_1_\ [+4(1.99e-05)]_2_[+1(7.52e-05)]_[+1(2.63e-05)]_22 chr1:67572209-67572289 4.15e-05 15_[+5(1.63e-05)]_36_[+1(9.78e-05)]_\ 13 chr1:54123562-54123642 4.54e-03 20_[+2(7.47e-05)]_52 chr2:73400133-73400213 1.71e-01 80 chr1:228259975-228260055 5.34e-01 80 chr10:47084402-47084482 6.42e-02 80 chr22:22971821-22971901 2.45e-01 80 chr1:53099616-53099696 6.29e-02 80 chr1:225079131-225079211 9.13e-04 11_[+2(1.84e-05)]_61 chr13:91937339-91937419 5.05e-01 80 chr7:134318434-134318514 4.65e-03 19_[+3(8.94e-05)]_1_[+2(7.47e-05)]_\ 7_[+3(1.84e-05)]_29 chr8:1761438-1761518 3.53e-02 9_[+3(8.94e-05)]_21_[+3(7.19e-05)]_\ 34 chr5:14652627-14652707 2.26e-01 80 chr2:132281624-132281704 7.15e-02 80 chr13:90753361-90753441 7.51e-01 80 chr7:129887021-129887101 1.05e-03 32_[+3(1.84e-05)]_25_[+2(1.84e-05)]_\ 7 chr10:50828096-50828176 2.69e-01 34_[+1(7.52e-05)]_38 chr13:90793580-90793660 1.87e-01 80 chr22:21385427-21385507 1.31e-01 80 chr21:11167785-11167865 3.02e-02 65_[+1(5.17e-05)]_7 chr1:233858433-233858513 6.11e-01 80 chr4:190527807-190527887 9.83e-04 11_[+3(8.94e-05)]_2_[+2(3.78e-05)]_\ 8_[+2(3.78e-05)]_5_[+2(7.47e-05)]_22 chr22:17000273-17000353 7.05e-01 80 chr22:22988569-22988649 3.94e-02 2_[+4(9.36e-05)]_70 chr16:14432181-14432261 4.92e-02 80 chr6:49982567-49982647 9.71e-02 80 chr13:91345066-91345146 1.13e-03 22_[+3(5.25e-05)]_[+5(6.20e-05)]_42 chr1:59608554-59608634 4.24e-01 80 chr5:74537992-74538072 1.12e-01 80 chr7:20285996-20286076 5.66e-02 54_[+1(9.78e-05)]_18 chr6:6620127-6620207 6.43e-03 14_[+4(3.89e-05)]_22_[+1(2.63e-05)]_\ 28 chr13:90489631-90489711 1.70e-01 80 chr5:1433787-1433867 6.61e-01 80 chr13:91781246-91781326 5.87e-02 26_[+1(5.17e-05)]_46 chr7:111749341-111749421 5.07e-02 80 chr1:200165740-200165820 3.64e-01 80 chr1:189070068-189070148 4.34e-03 1_[+1(2.63e-05)]_13_[+4(1.99e-05)]_\ 21_[+1(9.78e-05)]_2_[+4(1.99e-05)]_11 chr13:92179413-92179493 1.89e-01 80 chr7:104574892-104574972 9.59e-02 80 chr10:47047005-47047085 1.07e-01 80 chr7:158643123-158643203 8.28e-02 80 chr6:145198504-145198584 4.38e-03 43_[+3(7.19e-05)]_21_[+2(1.84e-05)] chr5:567629-567709 1.87e-01 80 chr13:91202373-91202453 8.10e-03 [+4(9.36e-05)]_[+1(5.17e-05)]_64 chr1:15713416-15713496 4.53e-02 80 chr15:67104973-67105053 1.07e-01 80 chr22:19555996-19556076 1.19e-02 66_[+1(2.63e-05)]_6 chr1:165368385-165368465 1.66e-02 80 chr22:23012300-23012380 4.65e-02 80 chr7:133964277-133964357 2.08e-01 80 chr7:522278-522358 4.24e-01 80 chr2:177000937-177001017 3.15e-02 23_[+4(1.99e-05)]_49 chr7:26285549-26285629 5.30e-02 80 chr1:208053664-208053744 1.87e-01 80 chr13:93275479-93275559 2.60e-01 80 chr2:8330519-8330599 3.05e-03 24_[+3(3.64e-05)]_12_[+2(3.78e-05)]_\ [+3(8.94e-05)]_20 chr10:46967404-46967484 5.48e-02 80 chr10:46997399-46997479 2.15e-02 80 chr13:91899011-91899091 8.89e-02 46_[+1(7.52e-05)]_26 chr6:87856728-87856808 4.47e-03 57_[+5(1.63e-05)]_15 chr16:84063927-84064007 1.13e-01 80 chr2:149384125-149384205 2.06e-01 80 chr22:22970060-22970140 1.03e-01 80 chr10:46955174-46955254 2.25e-01 80 chr13:92401039-92401119 1.37e-01 80 chr22:23361601-23361681 2.97e-01 80 chr2:243152859-243152939 4.42e-01 80 chr7:6664115-6664195 1.11e-02 80 chr12:34427294-34427374 3.34e-02 35_[+2(1.84e-05)]_14_[+2(1.84e-05)]_\ 15 chr13:92091295-92091375 1.56e-01 80 chr13:92437966-92438046 6.76e-01 80 chr21:10140716-10140796 3.01e-01 80 chr18:7013713-7013793 9.47e-02 80 chr1:227747853-227747933 5.90e-04 10_[+2(1.84e-05)]_38_[+2(1.84e-05)]_\ 16 chr5:73561259-73561339 5.75e-02 37_[+1(7.52e-05)]_35 chr5:147889605-147889685 3.11e-01 80 chr13:81462276-81462356 1.53e-01 80 chr22:22795818-22795898 1.32e-01 80 chr13:90853135-90853215 1.90e-02 6_[+3(7.19e-05)]_66 chr7:132859502-132859582 5.35e-02 80 chr13:92370529-92370609 3.59e-01 80 chr13:90597279-90597359 1.42e-01 80 chr13:91093606-91093686 4.63e-03 80 chr22:17066022-17066102 2.96e-04 38_[+5(1.63e-05)]_2_[+4(9.36e-05)]_\ 24 chr10:43342197-43342277 2.88e-03 60_[+3(5.25e-05)]_12 chr13:90965116-90965196 8.66e-01 80 chr2:146102005-146102085 1.89e-02 32_[+3(1.84e-05)]_4_[+3(7.19e-05)]_\ 12_[+3(1.84e-05)]_8 chr22:23278561-23278641 8.22e-02 80 chr2:95611957-95612037 1.80e-01 23_[+2(7.47e-05)]_49 chr8:101857065-101857145 1.05e-01 80 chr17:36193968-36194048 9.44e-02 80 chr15:95394135-95394215 8.36e-01 80 chr18:33018466-33018546 2.99e-01 80 chr22:22438594-22438674 8.34e-02 80 chr1:180228264-180228344 2.04e-01 80 chr21:11138292-11138372 2.18e-01 80 chr1:198298308-198298388 6.87e-01 80 chr14:21096588-21096668 3.44e-02 80 chr6:139388004-139388084 2.66e-03 [+3(1.84e-05)]_72 chr1:142914835-142914915 5.80e-02 80 chr7:159127461-159127541 5.86e-02 80 chr21:11082989-11083069 5.37e-01 80 chr2:11090112-11090192 1.66e-01 42_[+4(3.89e-05)]_30 chr1:86622994-86623074 2.70e-03 80 chr13:91393562-91393642 1.86e-02 10_[+1(5.17e-05)]_62 chr13:92103836-92103916 2.68e-01 80 chr1:206801998-206802078 3.24e-02 3_[+1(2.63e-05)]_69 chr22:23279646-23279726 2.97e-02 12_[+1(2.63e-05)]_60 chr1:15427770-15427850 1.54e-03 [+2(7.47e-05)]_14_[+2(1.84e-05)]_5_\ [+3(8.94e-05)]_37 chr16:33394714-33394794 8.07e-01 80 chr7:141848031-141848111 6.04e-01 80 chr1:169756285-169756365 8.01e-03 56_[+4(9.36e-05)]_16 chr15:21905485-21905565 4.76e-01 80 chr19:30132612-30132692 7.81e-02 80 chr4:108462805-108462885 1.50e-01 27_[+4(9.36e-05)]_45 chr13:81193522-81193602 1.89e-01 80 chr13:91818701-91818781 1.36e-01 80 chr1:23096482-23096562 8.18e-02 80 chr1:142898160-142898240 5.88e-02 80 chr22:21407271-21407351 2.41e-01 80 chr22:23503144-23503224 7.02e-01 80 chr13:92276292-92276372 3.21e-01 80 chr22:17038549-17038629 1.40e-01 80 chr13:90561400-90561480 3.84e-03 49_[+3(5.25e-05)]_23 chr1:143536886-143536966 7.55e-04 20_[+1(9.78e-05)]_52 chr13:91175365-91175445 9.34e-01 80 chr13:90946215-90946295 1.00e-01 80 chr19:51586696-51586776 4.96e-02 80 chr6:361701-361781 3.49e-01 80 chr22:23405668-23405748 1.24e-02 80 chr13:81398545-81398625 3.12e-01 80 chr4:168021509-168021589 1.36e-02 48_[+2(1.84e-05)]_[+2(1.84e-05)]_16 chr1:148930660-148930740 1.47e-02 19_[+1(2.63e-05)]_53 chr6:106370488-106370568 1.72e-02 31_[+1(2.63e-05)]_41 chr13:92211587-92211667 3.35e-01 80 chr15:95395649-95395729 9.96e-03 80 chr13:91303984-91304064 3.02e-01 80 chr13:91919747-91919827 3.48e-03 80 chr5:536650-536730 1.92e-01 80 chr17:35195274-35195354 1.74e-02 13_[+3(7.19e-05)]_59 chr22:20274435-20274515 3.30e-01 80 chr1:10967128-10967208 2.00e-01 80 chr2:180638847-180638927 9.57e-01 80 chr5:5705294-5705374 5.13e-01 80 chr13:90725755-90725835 1.69e-04 6_[+5(1.63e-05)]_2_[+4(9.36e-05)]_\ 26_[+1(9.78e-05)]_22 chr13:91878507-91878587 3.72e-01 80 chr22:23221174-23221254 3.02e-01 80 chr20:47131760-47131840 1.18e-02 67_[+5(4.73e-05)]_5 chr13:92079944-92080024 5.12e-01 80 chr13:90599591-90599671 8.45e-01 80 chr22:17003683-17003763 7.31e-02 80 chr1:234461746-234461826 3.24e-02 33_[+1(7.52e-05)]_10_[+1(2.63e-05)]_\ 21 chr6:738956-739036 3.01e-03 35_[+3(1.84e-05)]_13_[+2(3.78e-05)]_\ 1_[+3(7.19e-05)]_7 chr1:234876991-234877071 5.51e-03 16_[+4(3.89e-05)]_56 chr22:21325841-21325921 2.09e-02 80 chr10:76549977-76550057 6.14e-03 80 chr13:81436800-81436880 1.48e-01 5_[+1(2.63e-05)]_67 chr2:496970-497050 7.83e-01 80 chr3:177354021-177354101 8.73e-01 80 chr22:21330292-21330372 3.23e-01 80 chr7:112771689-112771769 4.26e-01 80 chr10:47148244-47148324 7.96e-01 80 chr1:142967211-142967291 9.81e-01 80 chr7:149217674-149217754 2.05e-02 80 chr10:47014227-47014307 5.94e-02 80 chr2:91778103-91778183 1.06e-02 5_[+2(1.84e-05)]_[+2(1.84e-05)]_59 chr22:23465441-23465521 1.47e-01 80 chr6:144204023-144204103 7.68e-03 80 chr7:96741276-96741356 1.02e-04 9_[+5(1.63e-05)]_2_[+4(9.36e-05)]_\ [+1(5.17e-05)]_45 chr8:21153102-21153182 7.09e-03 29_[+3(7.19e-05)]_29_[+2(3.78e-05)]_\ 6 chr1:30276736-30276816 7.47e-01 80 chr9:66455410-66455490 4.46e-02 80 chr13:91492322-91492402 3.42e-01 80 chr6:135216797-135216877 7.56e-02 80 chr22:23415515-23415595 1.03e-02 16_[+1(5.17e-05)]_56 chr6:158163246-158163326 1.26e-01 80 chr18:34042243-34042323 2.52e-02 80 chr2:145429610-145429690 2.04e-02 64_[+2(7.47e-05)]_8 chr21:46331132-46331212 9.87e-01 80 chr13:92294759-92294839 1.16e-01 32_[+5(6.20e-05)]_40 chr10:46964881-46964961 2.44e-01 80 chr6:168202141-168202221 9.30e-04 20_[+3(1.84e-05)]_32_[+2(7.47e-05)]_\ 12 chr17:21555949-21556029 4.30e-03 80 chr1:170534322-170534402 3.24e-02 31_[+1(2.63e-05)]_41 chr22:19139467-19139547 2.02e-04 38_[+2(1.84e-05)]_34 chr6:32261278-32261358 1.80e-01 80 chr8:49638826-49638906 7.82e-02 80 chr2:91769522-91769602 8.90e-02 80 chr12:115720118-11572019 8.75e-03 46_[+3(1.84e-05)]_26 chr13:92121396-92121476 1.51e-02 80 chr22:23329045-23329125 2.14e-02 80 chr1:200388717-200388797 1.35e-02 80 chr22:22915997-22916077 3.39e-02 61_[+1(7.52e-05)]_11 chr1:19128909-19128989 9.44e-01 80 chr7:158386833-158386913 6.86e-01 80 chr22:23409229-23409309 2.90e-01 80 chr16:5427552-5427632 1.73e-02 6_[+1(2.63e-05)]_66 chr13:91239354-91239434 5.84e-02 80 chr1:229722886-229722966 1.59e-01 80 chr12:25544048-25544128 1.80e-01 80 chr13:91828391-91828471 4.54e-02 80 chr3:13972947-13973027 2.92e-01 80 chr2:91785424-91785504 1.26e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n09.farnam.hpc.yale.internal ********************************************************************************