******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/MCM3.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2:86268339-86268419 1.0000 80 chr4:122577569-122577649 1.0000 80 chr6:64322904-64322984 1.0000 80 chr19:33771337-33771417 1.0000 80 chr16:69105915-69105995 1.0000 80 chr7:5471521-5471601 1.0000 80 chr13:78167383-78167463 1.0000 80 chr14:101087617-10108769 1.0000 80 chr1:61324062-61324142 1.0000 80 chr22:30223820-30223900 1.0000 80 chr16:56311723-56311803 1.0000 80 chr3:71460411-71460491 1.0000 80 chr3:184084870-184084950 1.0000 80 chr3:119187434-119187514 1.0000 80 chr17:18034089-18034169 1.0000 80 chr11:10387900-10387980 1.0000 80 chr12:113740860-11374094 1.0000 80 chr6:138111746-138111826 1.0000 80 chr11:122912048-12291212 1.0000 80 chr18:7676584-7676664 1.0000 80 chr6:35791163-35791243 1.0000 80 chr12:54546507-54546587 1.0000 80 chr12:104264582-10426466 1.0000 80 chr12:7034235-7034315 1.0000 80 chr7:150699503-150699583 1.0000 80 chr2:171199558-171199638 1.0000 80 chr14:103579671-10357975 1.0000 80 chr22:37908480-37908560 1.0000 80 chr6:31561059-31561139 1.0000 80 chr12:107498417-10749849 1.0000 80 chr17:36882592-36882672 1.0000 80 chr1:44870830-44870910 1.0000 80 chr13:76579772-76579852 1.0000 80 chr16:85490142-85490222 1.0000 80 chr1:157980165-157980245 1.0000 80 chr11:18136924-18137004 1.0000 80 chrX:1654583-1654663 1.0000 80 chr7:129438065-129438145 1.0000 80 chr3:46483383-46483463 1.0000 80 chr8:37693572-37693652 1.0000 80 chr1:182259065-182259145 1.0000 80 chr13:91049760-91049840 1.0000 80 chr1:16364528-16364608 1.0000 80 chrX:151140292-151140372 1.0000 80 chr1:145531998-145532078 1.0000 80 chr15:67124521-67124601 1.0000 80 chr8:27336721-27336801 1.0000 80 chr11:95070647-95070727 1.0000 80 chr7:137510358-137510438 1.0000 80 chr1:3455211-3455291 1.0000 80 chr6:43234687-43234767 1.0000 80 chr17:16388906-16388986 1.0000 80 chrX:151389265-151389345 1.0000 80 chr1:53124627-53124707 1.0000 80 chr10:47045337-47045417 1.0000 80 chr7:100117957-100118037 1.0000 80 chr5:175942543-175942623 1.0000 80 chr6:158113216-158113296 1.0000 80 chr22:20721146-20721226 1.0000 80 chr22:21895510-21895590 1.0000 80 chr22:22603928-22604008 1.0000 80 chr1:54603304-54603384 1.0000 80 chr7:135772772-135772852 1.0000 80 chr19:10078171-10078251 1.0000 80 chr4:3038736-3038816 1.0000 80 chr13:92070772-92070852 1.0000 80 chr3:142883668-142883748 1.0000 80 chr2:74796980-74797060 1.0000 80 chr17:65812397-65812477 1.0000 80 chr2:43013115-43013195 1.0000 80 chr19:51331804-51331884 1.0000 80 chr20:49078079-49078159 1.0000 80 chr6:4576039-4576119 1.0000 80 chr6:149379460-149379540 1.0000 80 chr22:20208356-20208436 1.0000 80 chr22:21005091-21005171 1.0000 80 chr22:17031581-17031661 1.0000 80 chr18:11803854-11803934 1.0000 80 chr1:225630568-225630648 1.0000 80 chr22:23245958-23246038 1.0000 80 chrX:55042352-55042432 1.0000 80 chr7:143092335-143092415 1.0000 80 chr22:23356865-23356945 1.0000 80 chrX:70427476-70427556 1.0000 80 chr16:70794800-70794880 1.0000 80 chr1:221939749-221939829 1.0000 80 chr10:22480164-22480244 1.0000 80 chr1:19974350-19974430 1.0000 80 chr4:148662922-148663002 1.0000 80 chr1:68101374-68101454 1.0000 80 chr1:31909804-31909884 1.0000 80 chr1:36054779-36054859 1.0000 80 chr12:98890219-98890299 1.0000 80 chr15:43597396-43597476 1.0000 80 chr2:218715406-218715486 1.0000 80 chr1:43502777-43502857 1.0000 80 chr15:64295076-64295156 1.0000 80 chr7:138344751-138344831 1.0000 80 chr13:92378936-92379016 1.0000 80 chr18:2420550-2420630 1.0000 80 chr22:38541807-38541887 1.0000 80 chr10:5596765-5596845 1.0000 80 chr22:22602813-22602893 1.0000 80 chr9:75437430-75437510 1.0000 80 chr7:135568217-135568297 1.0000 80 chr2:42334454-42334534 1.0000 80 chr22:17253514-17253594 1.0000 80 chr7:101182576-101182656 1.0000 80 chr16:1031261-1031341 1.0000 80 chr17:72892708-72892788 1.0000 80 chr19:16361028-16361108 1.0000 80 chr7:148649125-148649205 1.0000 80 chr2:114055383-114055463 1.0000 80 chr2:47054563-47054643 1.0000 80 chr11:73329929-73330009 1.0000 80 chr3:43835325-43835405 1.0000 80 chr1:182303602-182303682 1.0000 80 chr22:22829150-22829230 1.0000 80 chr22:19146080-19146160 1.0000 80 chr22:21421401-21421481 1.0000 80 chr8:144448682-144448762 1.0000 80 chr6:160131788-160131868 1.0000 80 chr2:113763863-113763943 1.0000 80 chr19:36346570-36346650 1.0000 80 chr9:117090669-117090749 1.0000 80 chr13:28923595-28923675 1.0000 80 chr6:149570251-149570331 1.0000 80 chr15:45739007-45739087 1.0000 80 chr22:22253794-22253874 1.0000 80 chr7:102851182-102851262 1.0000 80 chr7:127234121-127234201 1.0000 80 chr1:228258654-228258734 1.0000 80 chr12:93920761-93920841 1.0000 80 chr14:31527678-31527758 1.0000 80 chr7:105708990-105709070 1.0000 80 chr18:9458739-9458819 1.0000 80 chr6:27733392-27733472 1.0000 80 chr13:81269067-81269147 1.0000 80 chr17:80141899-80141979 1.0000 80 chr19:42896220-42896300 1.0000 80 chr19:41075895-41075975 1.0000 80 chr22:35776808-35776888 1.0000 80 chr1:7992733-7992813 1.0000 80 chr3:115480518-115480598 1.0000 80 chr1:43523421-43523501 1.0000 80 chr7:128528668-128528748 1.0000 80 chr22:22542520-22542600 1.0000 80 chr10:6172233-6172313 1.0000 80 chr1:15244299-15244379 1.0000 80 chr1:214387531-214387611 1.0000 80 chr7:116489809-116489889 1.0000 80 chr22:18964059-18964139 1.0000 80 chr15:77896961-77897041 1.0000 80 chr2:112356587-112356667 1.0000 80 chr2:112921386-112921466 1.0000 80 chr6:13184843-13184923 1.0000 80 chr1:214694984-214695064 1.0000 80 chr13:91524883-91524963 1.0000 80 chr22:19543431-19543511 1.0000 80 chr12:49258165-49258245 1.0000 80 chr10:98400851-98400931 1.0000 80 chr1:53184665-53184745 1.0000 80 chr22:19148304-19148384 1.0000 80 chr20:30625758-30625838 1.0000 80 chr7:108101609-108101689 1.0000 80 chr7:140916272-140916352 1.0000 80 chr2:121438131-121438211 1.0000 80 chr1:52564185-52564265 1.0000 80 chr6:10360010-10360090 1.0000 80 chr22:19721810-19721890 1.0000 80 chr6:3487725-3487805 1.0000 80 chr7:132899643-132899723 1.0000 80 chr6:27545927-27546007 1.0000 80 chr12:49581838-49581918 1.0000 80 chr3:45835679-45835759 1.0000 80 chr18:141987-142067 1.0000 80 chr7:127282238-127282318 1.0000 80 chr3:10513128-10513208 1.0000 80 chr22:23282429-23282509 1.0000 80 chr7:91248130-91248210 1.0000 80 chr22:23443756-23443836 1.0000 80 chr22:17185866-17185946 1.0000 80 chr6:11088683-11088763 1.0000 80 chr17:28930540-28930620 1.0000 80 chr5:12110-12190 1.0000 80 chr15:83455916-83455996 1.0000 80 chr22:17068202-17068282 1.0000 80 chr21:46443733-46443813 1.0000 80 chr22:19689820-19689900 1.0000 80 chr22:19314003-19314083 1.0000 80 chr22:18549180-18549260 1.0000 80 chr9:125120081-125120161 1.0000 80 chr2:243152871-243152951 1.0000 80 chr1:24014727-24014807 1.0000 80 chr22:21058836-21058916 1.0000 80 chrX:60214-60294 1.0000 80 chr2:170221120-170221200 1.0000 80 chr7:128062264-128062344 1.0000 80 chr22:23105258-23105338 1.0000 80 chr11:1016823-1016903 1.0000 80 chr11:114632947-11463302 1.0000 80 chr2:13064958-13065038 1.0000 80 chr9:94922835-94922915 1.0000 80 chr22:21024953-21025033 1.0000 80 chr13:92314484-92314564 1.0000 80 chr19:51156912-51156992 1.0000 80 chr6:11783595-11783675 1.0000 80 chr5:70306138-70306218 1.0000 80 chr22:20280335-20280415 1.0000 80 chr10:27945721-27945801 1.0000 80 chr15:85055732-85055812 1.0000 80 chr14:19608984-19609064 1.0000 80 chr16:53074885-53074965 1.0000 80 chr1:24617726-24617806 1.0000 80 chr2:145632466-145632546 1.0000 80 chr7:158853170-158853250 1.0000 80 chr11:68189153-68189233 1.0000 80 chr1:205035855-205035935 1.0000 80 chr13:91679192-91679272 1.0000 80 chr13:91945019-91945099 1.0000 80 chr22:22249262-22249342 1.0000 80 chr10:47101059-47101139 1.0000 80 chr1:241995097-241995177 1.0000 80 chr7:134372203-134372283 1.0000 80 chr22:22705927-22706007 1.0000 80 chr13:90753281-90753361 1.0000 80 chr6:31687209-31687289 1.0000 80 chr2:85797502-85797582 1.0000 80 chr9:67793657-67793737 1.0000 80 chr13:92065445-92065525 1.0000 80 chr15:49197091-49197171 1.0000 80 chr2:187396870-187396950 1.0000 80 chr20:46524451-46524531 1.0000 80 chr2:28606413-28606493 1.0000 80 chr22:23467947-23468027 1.0000 80 chr15:65532606-65532686 1.0000 80 chr20:25843475-25843555 1.0000 80 chr19:16396040-16396120 1.0000 80 chr2:171689146-171689226 1.0000 80 chr2:149392527-149392607 1.0000 80 chrX:16118263-16118343 1.0000 80 chr13:92230406-92230486 1.0000 80 chr21:47032114-47032194 1.0000 80 chr19:35625847-35625927 1.0000 80 chr6:125080780-125080860 1.0000 80 chr22:19313200-19313280 1.0000 80 chr6:140075775-140075855 1.0000 80 chr17:44943796-44943876 1.0000 80 chr7:106584609-106584689 1.0000 80 chr7:99598051-99598131 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_MCM3/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/MCM3.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.244 C 0.24 G 0.255 T 0.261 Background letter frequencies (from file dataset with add-one prior applied): A 0.244 C 0.24 G 0.255 T 0.261 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGTGTGTG MEME-1 width = 8 sites = 84 llr = 865 E-value = 2.8e-132 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::::::: probability G :a:a:a:a matrix T 9:a:a:a: bits 2.1 * * 1.9 **** ** 1.6 ******** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (14.9 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTGTGTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:44943796-44943876 53 1.96e-05 tgtgtgtatt tgtgtgtg tAGGGGGATC chr6:140075775-140075855 66 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgt chr15:65532606-65532686 57 1.96e-05 ggggggctag tgtgtgtg tgtgtgtgtg chr2:28606413-28606493 13 1.96e-05 tgtgtgtgtc tgtgtgtg tgtgtgtctg chr2:187396870-187396950 14 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgag chr11:68189153-68189233 54 1.96e-05 gtgtgtggtg tgtgtgtg tgtatggggg chr2:145632466-145632546 50 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgCAAGCT chr14:19608984-19609064 66 1.96e-05 tgtatgtgtg tgtgtgtg tgtgtgt chr10:27945721-27945801 61 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtg chr11:114632947-11463302 69 1.96e-05 agtgtgtatg tgtgtgtg ggag chr7:128062264-128062344 69 1.96e-05 tgtgtctgta tgtgtgtg taag chr2:170221120-170221200 49 1.96e-05 tgtgtgtgtg tgtgtgtg CCCTTTCACT chr22:23282429-23282509 53 1.96e-05 tttgacctcc tgtgtgtg cccttcaaca chr3:10513128-10513208 1 1.96e-05 . tgtgtgtg tTCTAGGAAG chr2:121438131-121438211 8 1.96e-05 gtgtgtg tgtgtgtg tCCCCGTCCC chr10:98400851-98400931 12 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtg chr12:49258165-49258245 48 1.96e-05 cgcgcgcgcg tgtgtgtg catgtgtgta chr15:77896961-77897041 49 1.96e-05 tgtgtgtgtg tgtgtgtg tgtctgtgtc chr10:6172233-6172313 68 1.96e-05 tgattgtgag tgtgtgtg tgtgG chr3:115480518-115480598 64 1.96e-05 tgtgtgtgtg tgtgtgtg GTGGCTGCC chr22:35776808-35776888 61 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtg chr14:31527678-31527758 58 1.96e-05 tgtgtgtatg tgtgtgtg tgtgtgtgtg chr12:93920761-93920841 45 1.96e-05 tgtgtgtgta tgtgtgtg tgtgtgtgtg chr7:127234121-127234201 28 1.96e-05 tgtatgtgtg tgtgtgtg tgtatgtACT chr7:102851182-102851262 72 1.96e-05 tgcgtgtgcg tgtgtgtg t chr1:182303602-182303682 60 1.96e-05 AGGCAAtgtg tgtgtgtg tgtgtgtgtg chr3:43835325-43835405 36 1.96e-05 TGTGGCCACC TGTGTGTG AGGAACTGTA chr11:73329929-73330009 10 1.96e-05 gtgtgtgtg tgtgtgtg tgtgtgtgtg chr19:16361028-16361108 66 1.96e-05 tgtgtgtgtg tgtgtgtg tatgtgt chr16:1031261-1031341 28 1.96e-05 GGGCtgtgtg tgtgtgtg tgtgtgtgag chr7:101182576-101182656 6 1.96e-05 gtgtg tgtgtgtg tgtgtgtgtg chr9:75437430-75437510 13 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtg chr15:64295076-64295156 64 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgt chr1:36054779-36054859 51 1.96e-05 tgtgtgtgtg tgtgtgtg ATTGCCTGTG chr1:19974350-19974430 12 1.96e-05 tgtgtgtgcg tgtgtgtg tgtgtgtgcg chr1:221939749-221939829 52 1.96e-05 tgtgtgtgag tgtgtgtg tgtgtgtgtg chr16:70794800-70794880 71 1.96e-05 AGAGGgtgtg tgtgtgtg tg chrX:55042352-55042432 67 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtg chr6:149379460-149379540 56 1.96e-05 tgtgtgtgtg tgtgtgtg tatgtgcgcg chr20:49078079-49078159 57 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgCG chr2:43013115-43013195 57 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtg chr17:65812397-65812477 56 1.96e-05 tgtgtgtgtg tgtgtgtg tacgtgtgtg chr2:74796980-74797060 66 1.96e-05 cgtgtgtgtg tgtgtgtg tgtgtgt chr3:142883668-142883748 56 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtg chr4:3038736-3038816 47 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtatg chr1:54603304-54603384 65 1.96e-05 tgtgtgtgtg tgtgtgtg tgCATGCG chr5:175942543-175942623 73 1.96e-05 tgtgtgtgtg tgtgtgtg chrX:151389265-151389345 71 1.96e-05 tgcatgtgcg tgtgtgtg cc chr17:16388906-16388986 49 1.96e-05 Agtgtgtgtg tgtgtgtg tgtgtgtgtg chr6:43234687-43234767 53 1.96e-05 AGCAtgcgtg tgtgtgtg tgtgtgtgtg chr1:3455211-3455291 54 1.96e-05 TGTGCCtgtg tgtgtgtg tgtgtgtgtg chr15:67124521-67124601 59 1.96e-05 ggggtatgta tgtgtgtg agtgtgtggg chr1:145531998-145532078 63 1.96e-05 tatgtgtgtg tgtgtgtg tgtgtCTGCA chrX:151140292-151140372 48 1.96e-05 tgtgtgtgtc tgtgtgtg tgtgtgtgtg chr3:46483383-46483463 50 1.96e-05 agagtgtgtg tgtgtgtg tgtgtgtgtg chr11:18136924-18137004 53 1.96e-05 ttagtgtgtg tgtgtgtg tgtgtgtgtt chr16:85490142-85490222 45 1.96e-05 TTTCCTGCCg tgtgtgtg tgtgtgtgtg chr13:76579772-76579852 49 1.96e-05 TTTGCCACtg tgtgtgtg tgtgtgtgtg chr1:44870830-44870910 60 1.96e-05 tgtgcgcgcg tgtgtgtg tCTCCGAGTC chr17:36882592-36882672 51 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtctgtC chr6:31561059-31561139 51 1.96e-05 ACCTtgtgtg tgtgtgtg tgtgtgtgtg chr14:103579671-10357975 73 1.96e-05 tgtgtatgtg tgtgtgtg chr12:7034235-7034315 63 1.96e-05 tgtgtgtgtg tgtgtgtg AGAGAGAGAG chr12:104264582-10426466 65 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtg chr12:54546507-54546587 51 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtg chr18:7676584-7676664 68 1.96e-05 tgtgtgtgtg tgtgtgtg tatgt chr11:10387900-10387980 10 1.96e-05 gtgtgtgtg tgtgtgtg tgtgtgtgtg chr17:18034089-18034169 50 1.96e-05 TCAgtgtgtg tgtgtgtg tgtgtgtgtg chr3:184084870-184084950 72 1.96e-05 gctgtgtgtg tgtgtgtg t chr3:71460411-71460491 60 1.96e-05 tgtgtgtgta tgtgtgtg tgtgagtgac chr1:61324062-61324142 57 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtTTTAA chr14:101087617-10108769 56 1.96e-05 Agtgtgtgtg tgtgtgtg tgtgtgtgtg chr13:78167383-78167463 55 1.96e-05 tgtgtctgtg tgtgtgtg tgtgtgtgtc chr16:69105915-69105995 73 1.96e-05 agggagaccg tgtgtgtg chr6:64322904-64322984 71 1.96e-05 tgtgtgtgtg tgtgtgtg tg chr2:86268339-86268419 73 1.96e-05 tgtctgtgtg tgtgtgtg chr11:1016823-1016903 70 3.80e-05 GTAGGTGGGG AGTGTGTG GTG chr13:92070772-92070852 17 5.80e-05 GCTTCTTGAG TGTGTTTG TTTTGCATAG chr7:140916272-140916352 72 7.72e-05 CAGGTGAACT GGTGTGTG T chr16:56311723-56311803 32 7.72e-05 acacacacac GGTGTGTG AGATCTTCCA chr2:149392527-149392607 10 9.60e-05 TGATCACAT TGTGTGTA ATTGCATGGC chr22:21895510-21895590 71 1.15e-04 attaattagc tgggtgtg gt chr3:45835679-45835759 57 1.34e-04 TGCTCATGGA AGTGTTTG GAAGGCAGGA chr22:19543431-19543511 68 1.34e-04 GTAGGGAGTT AGTGTTTG GAGGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:44943796-44943876 2e-05 52_[+1]_20 chr6:140075775-140075855 2e-05 65_[+1]_7 chr15:65532606-65532686 2e-05 56_[+1]_16 chr2:28606413-28606493 2e-05 12_[+1]_60 chr2:187396870-187396950 2e-05 13_[+1]_59 chr11:68189153-68189233 2e-05 53_[+1]_19 chr2:145632466-145632546 2e-05 49_[+1]_23 chr14:19608984-19609064 2e-05 65_[+1]_7 chr10:27945721-27945801 2e-05 60_[+1]_12 chr11:114632947-11463302 2e-05 68_[+1]_4 chr7:128062264-128062344 2e-05 68_[+1]_4 chr2:170221120-170221200 2e-05 48_[+1]_24 chr22:23282429-23282509 2e-05 52_[+1]_20 chr3:10513128-10513208 2e-05 [+1]_72 chr2:121438131-121438211 2e-05 7_[+1]_65 chr10:98400851-98400931 2e-05 11_[+1]_61 chr12:49258165-49258245 2e-05 47_[+1]_25 chr15:77896961-77897041 2e-05 48_[+1]_24 chr10:6172233-6172313 2e-05 67_[+1]_5 chr3:115480518-115480598 2e-05 63_[+1]_9 chr22:35776808-35776888 2e-05 60_[+1]_12 chr14:31527678-31527758 2e-05 57_[+1]_15 chr12:93920761-93920841 2e-05 44_[+1]_28 chr7:127234121-127234201 2e-05 27_[+1]_45 chr7:102851182-102851262 2e-05 71_[+1]_1 chr1:182303602-182303682 2e-05 59_[+1]_13 chr3:43835325-43835405 2e-05 35_[+1]_37 chr11:73329929-73330009 2e-05 9_[+1]_63 chr19:16361028-16361108 2e-05 65_[+1]_7 chr16:1031261-1031341 2e-05 27_[+1]_45 chr7:101182576-101182656 2e-05 5_[+1]_67 chr9:75437430-75437510 2e-05 12_[+1]_60 chr15:64295076-64295156 2e-05 63_[+1]_9 chr1:36054779-36054859 2e-05 50_[+1]_22 chr1:19974350-19974430 2e-05 11_[+1]_61 chr1:221939749-221939829 2e-05 51_[+1]_21 chr16:70794800-70794880 2e-05 70_[+1]_2 chrX:55042352-55042432 2e-05 66_[+1]_6 chr6:149379460-149379540 2e-05 55_[+1]_17 chr20:49078079-49078159 2e-05 56_[+1]_16 chr2:43013115-43013195 2e-05 56_[+1]_16 chr17:65812397-65812477 2e-05 55_[+1]_17 chr2:74796980-74797060 2e-05 65_[+1]_7 chr3:142883668-142883748 2e-05 55_[+1]_17 chr4:3038736-3038816 2e-05 46_[+1]_26 chr1:54603304-54603384 2e-05 64_[+1]_8 chr5:175942543-175942623 2e-05 72_[+1] chrX:151389265-151389345 2e-05 70_[+1]_2 chr17:16388906-16388986 2e-05 48_[+1]_24 chr6:43234687-43234767 2e-05 52_[+1]_20 chr1:3455211-3455291 2e-05 53_[+1]_19 chr15:67124521-67124601 2e-05 58_[+1]_14 chr1:145531998-145532078 2e-05 62_[+1]_10 chrX:151140292-151140372 2e-05 47_[+1]_25 chr3:46483383-46483463 2e-05 49_[+1]_23 chr11:18136924-18137004 2e-05 52_[+1]_20 chr16:85490142-85490222 2e-05 44_[+1]_28 chr13:76579772-76579852 2e-05 48_[+1]_24 chr1:44870830-44870910 2e-05 59_[+1]_13 chr17:36882592-36882672 2e-05 50_[+1]_22 chr6:31561059-31561139 2e-05 50_[+1]_22 chr14:103579671-10357975 2e-05 72_[+1] chr12:7034235-7034315 2e-05 62_[+1]_10 chr12:104264582-10426466 2e-05 64_[+1]_8 chr12:54546507-54546587 2e-05 50_[+1]_22 chr18:7676584-7676664 2e-05 67_[+1]_5 chr11:10387900-10387980 2e-05 9_[+1]_63 chr17:18034089-18034169 2e-05 49_[+1]_23 chr3:184084870-184084950 2e-05 71_[+1]_1 chr3:71460411-71460491 2e-05 59_[+1]_13 chr1:61324062-61324142 2e-05 56_[+1]_16 chr14:101087617-10108769 2e-05 55_[+1]_17 chr13:78167383-78167463 2e-05 54_[+1]_18 chr16:69105915-69105995 2e-05 72_[+1] chr6:64322904-64322984 2e-05 70_[+1]_2 chr2:86268339-86268419 2e-05 72_[+1] chr11:1016823-1016903 3.8e-05 69_[+1]_3 chr13:92070772-92070852 5.8e-05 16_[+1]_56 chr7:140916272-140916352 7.7e-05 71_[+1]_1 chr16:56311723-56311803 7.7e-05 31_[+1]_41 chr2:149392527-149392607 9.6e-05 9_[+1]_63 chr22:21895510-21895590 0.00012 70_[+1]_2 chr3:45835679-45835759 0.00013 56_[+1]_16 chr22:19543431-19543511 0.00013 67_[+1]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTGTGTG width=8 seqs=84 chr17:44943796-44943876 ( 53) TGTGTGTG 1 chr6:140075775-140075855 ( 66) TGTGTGTG 1 chr15:65532606-65532686 ( 57) TGTGTGTG 1 chr2:28606413-28606493 ( 13) TGTGTGTG 1 chr2:187396870-187396950 ( 14) TGTGTGTG 1 chr11:68189153-68189233 ( 54) TGTGTGTG 1 chr2:145632466-145632546 ( 50) TGTGTGTG 1 chr14:19608984-19609064 ( 66) TGTGTGTG 1 chr10:27945721-27945801 ( 61) TGTGTGTG 1 chr11:114632947-11463302 ( 69) TGTGTGTG 1 chr7:128062264-128062344 ( 69) TGTGTGTG 1 chr2:170221120-170221200 ( 49) TGTGTGTG 1 chr22:23282429-23282509 ( 53) TGTGTGTG 1 chr3:10513128-10513208 ( 1) TGTGTGTG 1 chr2:121438131-121438211 ( 8) TGTGTGTG 1 chr10:98400851-98400931 ( 12) TGTGTGTG 1 chr12:49258165-49258245 ( 48) TGTGTGTG 1 chr15:77896961-77897041 ( 49) TGTGTGTG 1 chr10:6172233-6172313 ( 68) TGTGTGTG 1 chr3:115480518-115480598 ( 64) TGTGTGTG 1 chr22:35776808-35776888 ( 61) TGTGTGTG 1 chr14:31527678-31527758 ( 58) TGTGTGTG 1 chr12:93920761-93920841 ( 45) TGTGTGTG 1 chr7:127234121-127234201 ( 28) TGTGTGTG 1 chr7:102851182-102851262 ( 72) TGTGTGTG 1 chr1:182303602-182303682 ( 60) TGTGTGTG 1 chr3:43835325-43835405 ( 36) TGTGTGTG 1 chr11:73329929-73330009 ( 10) TGTGTGTG 1 chr19:16361028-16361108 ( 66) TGTGTGTG 1 chr16:1031261-1031341 ( 28) TGTGTGTG 1 chr7:101182576-101182656 ( 6) TGTGTGTG 1 chr9:75437430-75437510 ( 13) TGTGTGTG 1 chr15:64295076-64295156 ( 64) TGTGTGTG 1 chr1:36054779-36054859 ( 51) TGTGTGTG 1 chr1:19974350-19974430 ( 12) TGTGTGTG 1 chr1:221939749-221939829 ( 52) TGTGTGTG 1 chr16:70794800-70794880 ( 71) TGTGTGTG 1 chrX:55042352-55042432 ( 67) TGTGTGTG 1 chr6:149379460-149379540 ( 56) TGTGTGTG 1 chr20:49078079-49078159 ( 57) TGTGTGTG 1 chr2:43013115-43013195 ( 57) TGTGTGTG 1 chr17:65812397-65812477 ( 56) TGTGTGTG 1 chr2:74796980-74797060 ( 66) TGTGTGTG 1 chr3:142883668-142883748 ( 56) TGTGTGTG 1 chr4:3038736-3038816 ( 47) TGTGTGTG 1 chr1:54603304-54603384 ( 65) TGTGTGTG 1 chr5:175942543-175942623 ( 73) TGTGTGTG 1 chrX:151389265-151389345 ( 71) TGTGTGTG 1 chr17:16388906-16388986 ( 49) TGTGTGTG 1 chr6:43234687-43234767 ( 53) TGTGTGTG 1 chr1:3455211-3455291 ( 54) TGTGTGTG 1 chr15:67124521-67124601 ( 59) TGTGTGTG 1 chr1:145531998-145532078 ( 63) TGTGTGTG 1 chrX:151140292-151140372 ( 48) TGTGTGTG 1 chr3:46483383-46483463 ( 50) TGTGTGTG 1 chr11:18136924-18137004 ( 53) TGTGTGTG 1 chr16:85490142-85490222 ( 45) TGTGTGTG 1 chr13:76579772-76579852 ( 49) TGTGTGTG 1 chr1:44870830-44870910 ( 60) TGTGTGTG 1 chr17:36882592-36882672 ( 51) TGTGTGTG 1 chr6:31561059-31561139 ( 51) TGTGTGTG 1 chr14:103579671-10357975 ( 73) TGTGTGTG 1 chr12:7034235-7034315 ( 63) TGTGTGTG 1 chr12:104264582-10426466 ( 65) TGTGTGTG 1 chr12:54546507-54546587 ( 51) TGTGTGTG 1 chr18:7676584-7676664 ( 68) TGTGTGTG 1 chr11:10387900-10387980 ( 10) TGTGTGTG 1 chr17:18034089-18034169 ( 50) TGTGTGTG 1 chr3:184084870-184084950 ( 72) TGTGTGTG 1 chr3:71460411-71460491 ( 60) TGTGTGTG 1 chr1:61324062-61324142 ( 57) TGTGTGTG 1 chr14:101087617-10108769 ( 56) TGTGTGTG 1 chr13:78167383-78167463 ( 55) TGTGTGTG 1 chr16:69105915-69105995 ( 73) TGTGTGTG 1 chr6:64322904-64322984 ( 71) TGTGTGTG 1 chr2:86268339-86268419 ( 73) TGTGTGTG 1 chr11:1016823-1016903 ( 70) AGTGTGTG 1 chr13:92070772-92070852 ( 17) TGTGTTTG 1 chr7:140916272-140916352 ( 72) GGTGTGTG 1 chr16:56311723-56311803 ( 32) GGTGTGTG 1 chr2:149392527-149392607 ( 10) TGTGTGTA 1 chr22:21895510-21895590 ( 71) TGGGTGTG 1 chr3:45835679-45835759 ( 57) AGTGTTTG 1 chr22:19543431-19543511 ( 68) AGTGTTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.24891 E= 2.8e-132 -277 -1304 -342 185 -1304 -1304 197 -1304 -1304 -1304 -442 192 -1304 -1304 197 -1304 -1304 -1304 -1304 194 -1304 -1304 192 -287 -1304 -1304 -1304 194 -435 -1304 195 -1304 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 84 E= 2.8e-132 0.035714 0.000000 0.023810 0.940476 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.011905 0.988095 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.964286 0.035714 0.000000 0.000000 0.000000 1.000000 0.011905 0.000000 0.988095 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-1 regular expression -------------------------------------------------------------------------------- TGTGTGTG -------------------------------------------------------------------------------- Time 5.00 secs. ******************************************************************************** ******************************************************************************** MOTIF CACACACA MEME-2 width = 8 sites = 69 llr = 730 E-value = 9.8e-109 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACACACA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :a:a:a:a pos.-specific C a:a:a:9: probability G :::::::: matrix T :::::::: bits 2.1 ** 1.9 ****** * 1.6 ******** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (15.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACACACA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:125080780-125080860 12 1.18e-05 cacacacaca cacacaca caccccctat chrX:16118263-16118343 43 1.18e-05 cacacacata cacacaca tacacacata chr2:171689146-171689226 53 1.18e-05 cacacacaca cacacaca tacacacaTG chr20:25843475-25843555 46 1.18e-05 cacacacaca cacacaca cacaGAGTCC chr15:49197091-49197171 52 1.18e-05 acacaacaca cacacaca cacacacaca chr9:67793657-67793737 47 1.18e-05 cacacacaca cacacaca cacagagaca chr1:241995097-241995177 15 1.18e-05 ctccatcACA CACACACA CACCCCTCTC chr19:51156912-51156992 60 1.18e-05 cacacacaca cacacaca cacacacaca chr17:28930540-28930620 23 1.18e-05 cacacacaca cacacaca cacacactca chr22:23443756-23443836 58 1.18e-05 CTTTTCCCGA CACACACA GGTCTCCCAA chr7:91248130-91248210 52 1.18e-05 cacacacaca cacacaca caTATGCCAT chr18:141987-142067 49 1.18e-05 tggccagGAa cacacaca cacacacaga chr12:49581838-49581918 50 1.18e-05 cacacacaca cacacaca cTTCAGTCGG chr20:30625758-30625838 57 1.18e-05 catgcacaca cacacaca cacgcacaca chr2:112356587-112356667 64 1.18e-05 cacagagaca cacacaca cacacacac chr1:214387531-214387611 14 1.18e-05 cacacacaca cacacaca cacacacacT chr7:128528668-128528748 63 1.18e-05 gccacacata cacacaca catacataca chr1:7992733-7992813 65 1.18e-05 cacacataca cacacaca cacacata chr19:41075895-41075975 46 1.18e-05 cacagacaca cacacaca GACTCTTCCC chr17:80141899-80141979 49 1.18e-05 cacacacaca cacacaca cacaGCTCTC chr6:149570251-149570331 62 1.18e-05 cacgcacaca cacacaca cagacacCTA chr13:28923595-28923675 19 1.18e-05 cacgcacaca cacacaca cgcacacaTT chr19:36346570-36346650 10 1.18e-05 acacacaca cacacaca cacacacaca chr8:144448682-144448762 42 1.18e-05 catatgcacg cacacaca cgcacacgca chr2:47054563-47054643 72 1.18e-05 tacatgcaca cacacaca c chr2:114055383-114055463 48 1.18e-05 cacacacaga cacacaca cacacaGGTT chr22:38541807-38541887 26 1.18e-05 cacacacaca cacacaca cCCCTATACA chr1:43502777-43502857 61 1.18e-05 gacacacatg cacacaca tacacatgca chr15:43597396-43597476 67 1.18e-05 cacacataca cacacaca ggcata chr4:148662922-148663002 50 1.18e-05 cacacacaca cacacaca cCAGGCGCTT chr10:22480164-22480244 64 1.18e-05 acacacatat cacacaca cacacacat chrX:70427476-70427556 58 1.18e-05 cacacacaca cacacaca cacacgcaca chr1:225630568-225630648 27 1.18e-05 cacacacaca cacacaca cGGAGGGCCA chr19:10078171-10078251 53 1.18e-05 cacactcaca cacacaca tacaGCCTTG chr22:21895510-21895590 54 1.18e-05 cacacacaca cacacaca ttaattagct chr7:100117957-100118037 23 1.18e-05 cacacacaca cacacaca cacacacact chr7:137510358-137510438 65 1.18e-05 cacactcaca cacacaca tacacaca chr11:95070647-95070727 49 1.18e-05 cacacacaca cacacaca cTCTCTCACG chr8:27336721-27336801 63 1.18e-05 cacacacata cacacaca cacacacaca chr1:16364528-16364608 14 1.18e-05 cacacacaca cacacaca cacactagct chr1:182259065-182259145 3 1.18e-05 ca cacacaca cacacacaca chr8:37693572-37693652 2 1.18e-05 a cacacaca cacacacaca chr7:129438065-129438145 43 1.18e-05 cacacacaca cacacaca caAAACACAC chrX:1654583-1654663 54 1.18e-05 cacacacaca cacacaca AACCCTTTTC chr1:157980165-157980245 61 1.18e-05 cacacacaca cacacaca cacacacaca chr12:107498417-10749849 10 1.18e-05 acacacaca cacacaca cacacaAACT chr22:37908480-37908560 3 1.18e-05 ca cacacaca cacacacaca chr2:171199558-171199638 2 1.18e-05 a cacacaca cacacacaca chr7:150699503-150699583 30 1.18e-05 cacacacaca cacacaca cGCCAGGATG chr6:35791163-35791243 48 1.18e-05 catacataca cacacaca tatatataca chr11:122912048-12291212 46 1.18e-05 cgcacacaca cacacaca cacactcagc chr6:138111746-138111826 3 1.18e-05 ca cacacaca cacacacaca chr12:113740860-11374094 65 1.18e-05 ggtggacaca cacacaca cacacaca chr3:119187434-119187514 1 1.18e-05 . cacacaca cacacacaca chr16:56311723-56311803 17 1.18e-05 cacacacaca cacacaca cacacacGGT chr22:30223820-30223900 70 1.18e-05 attcttctga cacacaca cac chr7:5471521-5471601 68 1.18e-05 cacatacagg cacacaca cacag chr19:33771337-33771417 59 1.18e-05 catacacata cacacaca cacatacaca chr4:122577569-122577649 61 1.18e-05 cacacacaca cacacaca cacacacacG chr10:47101059-47101139 30 2.43e-05 attatagtat cacacaga atagtttcat chr1:205035855-205035935 48 2.43e-05 GGAAGACAGT CACACAGA AAGTAGGAGA chr2:218715406-218715486 42 3.58e-05 CACCAGCAGT CACACACC GAGCCAGACA chr9:94922835-94922915 23 6.02e-05 aacacatgaa cacaccca ggacacgcta chr9:117090669-117090749 67 6.02e-05 AAGCAAAAAA CACACATA ACaaag chr22:19313200-19313280 17 1.10e-04 tgaaaaataa gacacaca agtgactaat chr21:46443733-46443813 56 1.10e-04 acataacttt cacactca ttcaggggaa chr6:160131788-160131868 65 1.10e-04 ccacaaccac cactcaca ttgctctg chr22:21005091-21005171 17 1.10e-04 GGGCCCATCC CACAGACA ATATCCAGAA chr15:85055732-85055812 54 1.23e-04 TCCTCCTGTT CACACAGC CTCTCCTCCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:125080780-125080860 1.2e-05 11_[+2]_61 chrX:16118263-16118343 1.2e-05 42_[+2]_30 chr2:171689146-171689226 1.2e-05 52_[+2]_20 chr20:25843475-25843555 1.2e-05 45_[+2]_27 chr15:49197091-49197171 1.2e-05 51_[+2]_21 chr9:67793657-67793737 1.2e-05 46_[+2]_26 chr1:241995097-241995177 1.2e-05 14_[+2]_58 chr19:51156912-51156992 1.2e-05 59_[+2]_13 chr17:28930540-28930620 1.2e-05 22_[+2]_50 chr22:23443756-23443836 1.2e-05 57_[+2]_15 chr7:91248130-91248210 1.2e-05 51_[+2]_21 chr18:141987-142067 1.2e-05 48_[+2]_24 chr12:49581838-49581918 1.2e-05 49_[+2]_23 chr20:30625758-30625838 1.2e-05 56_[+2]_16 chr2:112356587-112356667 1.2e-05 63_[+2]_9 chr1:214387531-214387611 1.2e-05 13_[+2]_59 chr7:128528668-128528748 1.2e-05 62_[+2]_10 chr1:7992733-7992813 1.2e-05 64_[+2]_8 chr19:41075895-41075975 1.2e-05 45_[+2]_27 chr17:80141899-80141979 1.2e-05 48_[+2]_24 chr6:149570251-149570331 1.2e-05 61_[+2]_11 chr13:28923595-28923675 1.2e-05 18_[+2]_54 chr19:36346570-36346650 1.2e-05 9_[+2]_63 chr8:144448682-144448762 1.2e-05 41_[+2]_31 chr2:47054563-47054643 1.2e-05 71_[+2]_1 chr2:114055383-114055463 1.2e-05 47_[+2]_25 chr22:38541807-38541887 1.2e-05 25_[+2]_47 chr1:43502777-43502857 1.2e-05 60_[+2]_12 chr15:43597396-43597476 1.2e-05 66_[+2]_6 chr4:148662922-148663002 1.2e-05 49_[+2]_23 chr10:22480164-22480244 1.2e-05 63_[+2]_9 chrX:70427476-70427556 1.2e-05 57_[+2]_15 chr1:225630568-225630648 1.2e-05 26_[+2]_46 chr19:10078171-10078251 1.2e-05 52_[+2]_20 chr22:21895510-21895590 1.2e-05 53_[+2]_19 chr7:100117957-100118037 1.2e-05 22_[+2]_50 chr7:137510358-137510438 1.2e-05 64_[+2]_8 chr11:95070647-95070727 1.2e-05 48_[+2]_24 chr8:27336721-27336801 1.2e-05 62_[+2]_10 chr1:16364528-16364608 1.2e-05 13_[+2]_59 chr1:182259065-182259145 1.2e-05 2_[+2]_70 chr8:37693572-37693652 1.2e-05 1_[+2]_71 chr7:129438065-129438145 1.2e-05 42_[+2]_30 chrX:1654583-1654663 1.2e-05 53_[+2]_19 chr1:157980165-157980245 1.2e-05 60_[+2]_12 chr12:107498417-10749849 1.2e-05 9_[+2]_63 chr22:37908480-37908560 1.2e-05 2_[+2]_70 chr2:171199558-171199638 1.2e-05 1_[+2]_71 chr7:150699503-150699583 1.2e-05 29_[+2]_43 chr6:35791163-35791243 1.2e-05 47_[+2]_25 chr11:122912048-12291212 1.2e-05 45_[+2]_27 chr6:138111746-138111826 1.2e-05 2_[+2]_70 chr12:113740860-11374094 1.2e-05 64_[+2]_8 chr3:119187434-119187514 1.2e-05 [+2]_72 chr16:56311723-56311803 1.2e-05 16_[+2]_56 chr22:30223820-30223900 1.2e-05 69_[+2]_3 chr7:5471521-5471601 1.2e-05 67_[+2]_5 chr19:33771337-33771417 1.2e-05 58_[+2]_14 chr4:122577569-122577649 1.2e-05 60_[+2]_12 chr10:47101059-47101139 2.4e-05 29_[+2]_43 chr1:205035855-205035935 2.4e-05 47_[+2]_25 chr2:218715406-218715486 3.6e-05 41_[+2]_31 chr9:94922835-94922915 6e-05 22_[+2]_50 chr9:117090669-117090749 6e-05 66_[+2]_6 chr22:19313200-19313280 0.00011 16_[+2]_56 chr21:46443733-46443813 0.00011 55_[+2]_17 chr6:160131788-160131868 0.00011 64_[+2]_8 chr22:21005091-21005171 0.00011 16_[+2]_56 chr15:85055732-85055812 0.00012 53_[+2]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACACACA width=8 seqs=69 chr6:125080780-125080860 ( 12) CACACACA 1 chrX:16118263-16118343 ( 43) CACACACA 1 chr2:171689146-171689226 ( 53) CACACACA 1 chr20:25843475-25843555 ( 46) CACACACA 1 chr15:49197091-49197171 ( 52) CACACACA 1 chr9:67793657-67793737 ( 47) CACACACA 1 chr1:241995097-241995177 ( 15) CACACACA 1 chr19:51156912-51156992 ( 60) CACACACA 1 chr17:28930540-28930620 ( 23) CACACACA 1 chr22:23443756-23443836 ( 58) CACACACA 1 chr7:91248130-91248210 ( 52) CACACACA 1 chr18:141987-142067 ( 49) CACACACA 1 chr12:49581838-49581918 ( 50) CACACACA 1 chr20:30625758-30625838 ( 57) CACACACA 1 chr2:112356587-112356667 ( 64) CACACACA 1 chr1:214387531-214387611 ( 14) CACACACA 1 chr7:128528668-128528748 ( 63) CACACACA 1 chr1:7992733-7992813 ( 65) CACACACA 1 chr19:41075895-41075975 ( 46) CACACACA 1 chr17:80141899-80141979 ( 49) CACACACA 1 chr6:149570251-149570331 ( 62) CACACACA 1 chr13:28923595-28923675 ( 19) CACACACA 1 chr19:36346570-36346650 ( 10) CACACACA 1 chr8:144448682-144448762 ( 42) CACACACA 1 chr2:47054563-47054643 ( 72) CACACACA 1 chr2:114055383-114055463 ( 48) CACACACA 1 chr22:38541807-38541887 ( 26) CACACACA 1 chr1:43502777-43502857 ( 61) CACACACA 1 chr15:43597396-43597476 ( 67) CACACACA 1 chr4:148662922-148663002 ( 50) CACACACA 1 chr10:22480164-22480244 ( 64) CACACACA 1 chrX:70427476-70427556 ( 58) CACACACA 1 chr1:225630568-225630648 ( 27) CACACACA 1 chr19:10078171-10078251 ( 53) CACACACA 1 chr22:21895510-21895590 ( 54) CACACACA 1 chr7:100117957-100118037 ( 23) CACACACA 1 chr7:137510358-137510438 ( 65) CACACACA 1 chr11:95070647-95070727 ( 49) CACACACA 1 chr8:27336721-27336801 ( 63) CACACACA 1 chr1:16364528-16364608 ( 14) CACACACA 1 chr1:182259065-182259145 ( 3) CACACACA 1 chr8:37693572-37693652 ( 2) CACACACA 1 chr7:129438065-129438145 ( 43) CACACACA 1 chrX:1654583-1654663 ( 54) CACACACA 1 chr1:157980165-157980245 ( 61) CACACACA 1 chr12:107498417-10749849 ( 10) CACACACA 1 chr22:37908480-37908560 ( 3) CACACACA 1 chr2:171199558-171199638 ( 2) CACACACA 1 chr7:150699503-150699583 ( 30) CACACACA 1 chr6:35791163-35791243 ( 48) CACACACA 1 chr11:122912048-12291212 ( 46) CACACACA 1 chr6:138111746-138111826 ( 3) CACACACA 1 chr12:113740860-11374094 ( 65) CACACACA 1 chr3:119187434-119187514 ( 1) CACACACA 1 chr16:56311723-56311803 ( 17) CACACACA 1 chr22:30223820-30223900 ( 70) CACACACA 1 chr7:5471521-5471601 ( 68) CACACACA 1 chr19:33771337-33771417 ( 59) CACACACA 1 chr4:122577569-122577649 ( 61) CACACACA 1 chr10:47101059-47101139 ( 30) CACACAGA 1 chr1:205035855-205035935 ( 48) CACACAGA 1 chr2:218715406-218715486 ( 42) CACACACC 1 chr9:94922835-94922915 ( 23) CACACCCA 1 chr9:117090669-117090749 ( 67) CACACATA 1 chr22:19313200-19313280 ( 17) GACACACA 1 chr21:46443733-46443813 ( 56) CACACTCA 1 chr6:160131788-160131868 ( 65) CACTCACA 1 chr22:21005091-21005171 ( 17) CACAGACA 1 chr15:85055732-85055812 ( 54) CACACAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2095 E= 9.8e-109 -1275 204 -414 -1275 203 -1275 -1275 -1275 -1275 206 -1275 -1275 201 -1275 -1275 -416 -1275 204 -414 -1275 199 -405 -1275 -416 -1275 197 -255 -416 199 -305 -1275 -1275 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 69 E= 9.8e-109 0.000000 0.985507 0.014493 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.985507 0.000000 0.000000 0.014493 0.000000 0.985507 0.014493 0.000000 0.971014 0.014493 0.000000 0.014493 0.000000 0.942029 0.043478 0.014493 0.971014 0.028986 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-2 regular expression -------------------------------------------------------------------------------- CACACACA -------------------------------------------------------------------------------- Time 8.69 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTGTGTG MEME-3 width = 8 sites = 72 llr = 761 E-value = 1.2e-115 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::::::: probability G :a:a:a:a matrix T a:a:a:a: bits 2.1 * * 1.9 ******** 1.6 ******** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (15.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTGTGTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:44943796-44943876 17 1.96e-05 tgaatgtgga tgtgtgtg tgagggagtg chr6:140075775-140075855 54 1.96e-05 TCTCTCACtg tgtgtgtg tgtgtgtgtg chr15:65532606-65532686 65 1.96e-05 agtgtgtgtg tgtgtgtg tgtgtgtg chr2:28606413-28606493 3 1.96e-05 tg tgtgtgtg tctgtgtgtg chr2:187396870-187396950 6 1.96e-05 gtgtg tgtgtgtg tgtgtgtgtg chr11:68189153-68189233 8 1.96e-05 Ctgtgtg tgtgtgtg tgtgtgtgtg chr2:145632466-145632546 38 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtg chr10:27945721-27945801 53 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtg chr7:128062264-128062344 11 1.96e-05 tgtgtgtatg tgtgtgtg gggtgtgtgt chr2:170221120-170221200 7 1.96e-05 tgtgtg tgtgtgtg tgtgtgtgtg chr10:98400851-98400931 2 1.96e-05 g tgtgtgtg tgtgtgtgtg chr12:49258165-49258245 8 1.96e-05 AGgtgtg tgtgtgtg tgtgtgtgtg chr15:77896961-77897041 17 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtg chr10:6172233-6172313 22 1.96e-05 GGAgtgtgtg tgtgtgtg tgtgtgtgtg chr3:115480518-115480598 50 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtg chr22:35776808-35776888 69 1.96e-05 tgtgtgtgtg tgtgtgtg tgtT chr14:31527678-31527758 68 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgt chr12:93920761-93920841 55 1.96e-05 tgtgtgtgtg tgtgtgtg tACGCAGAGG chr7:127234121-127234201 4 1.96e-05 gcg tgtgtgtg cgtgagtgta chr1:182303602-182303682 68 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgt chr11:73329929-73330009 20 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtg chr19:16361028-16361108 58 1.96e-05 tgtgagtatg tgtgtgtg tgtgtgtgta chr16:1031261-1031341 36 1.96e-05 tgtgtgtgtg tgtgtgtg agagagagag chr7:101182576-101182656 16 1.96e-05 tgtgtgtgtg tgtgtgtg tgcgtatgtg chr9:75437430-75437510 25 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtg chr15:64295076-64295156 56 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtg chr1:36054779-36054859 21 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtg chr1:19974350-19974430 2 1.96e-05 g tgtgtgtg cgtgtgtgtg chr1:221939749-221939829 64 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgAAA chrX:55042352-55042432 53 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtg chr6:149379460-149379540 48 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgta chr20:49078079-49078159 49 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtg chr2:43013115-43013195 49 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtg chr17:65812397-65812477 48 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgta chr2:74796980-74797060 58 1.96e-05 tgtgcatgcg tgtgtgtg tgtgtgtgtg chr3:142883668-142883748 66 1.96e-05 tgtgtgtgtg tgtgtgtg tgAAGAT chr4:3038736-3038816 63 1.96e-05 tgtgtgtgta tgtgtgtg tgtatgtgtg chr1:54603304-54603384 55 1.96e-05 tgtgtgtgcg tgtgtgtg tgtgtgtgtg chr5:175942543-175942623 63 1.96e-05 Agtgtgtgtg tgtgtgtg tgtgtgtgtg chrX:151389265-151389345 27 1.96e-05 TCAGTCACtg tgtgtgtg tgtgtctgtc chr17:16388906-16388986 57 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtg chr6:43234687-43234767 69 1.96e-05 tgtgtgtgtg tgtgtgtg tgtg chr1:3455211-3455291 70 1.96e-05 tgtgtgtgtg tgtgtgtg tgt chr15:67124521-67124601 13 1.96e-05 cgtgtctgtg tgtgtgtg tgaggccagg chr1:145531998-145532078 55 1.96e-05 tgtgtgtgta tgtgtgtg tgtgtgtgtg chrX:151140292-151140372 68 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgt chr3:46483383-46483463 60 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtg chr11:18136924-18137004 61 1.96e-05 tgtgtgtgtg tgtgtgtg ttagcttctc chr16:85490142-85490222 69 1.96e-05 tgtgtgtgtg tgtgtgtg tgtg chr13:76579772-76579852 57 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtg chr1:44870830-44870910 46 1.96e-05 tgcgtgcgtg tgtgtgtg cgcgcgtgtg chr17:36882592-36882672 19 1.96e-05 tgtgtgagtg tgtgtgtg cgtgcatgtg chr6:31561059-31561139 73 1.96e-05 tgtgtgtgtg tgtgtgtg chr14:103579671-10357975 59 1.96e-05 tgtgtatatg tgtgtgtg tatgtgtgtg chr12:7034235-7034315 55 1.96e-05 cgtgtgtgtg tgtgtgtg tgtgtgtgAG chr12:104264582-10426466 51 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtg chr12:54546507-54546587 63 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtg chr18:7676584-7676664 60 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgta chr11:10387900-10387980 20 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtg chr17:18034089-18034169 66 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgt chr3:184084870-184084950 64 1.96e-05 tgtaaaaggc tgtgtgtg tgtgtgtgt chr3:71460411-71460491 50 1.96e-05 tgtgtgtgtg tgtgtgtg tatgtgtgtg chr1:61324062-61324142 49 1.96e-05 tgtgtgcatg tgtgtgtg tgtgtgtgtg chr14:101087617-10108769 68 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgt chr13:78167383-78167463 63 1.96e-05 tgtgtgtgtg tgtgtgtg tcagtggggg chr16:69105915-69105995 48 1.96e-05 tgtgtgtgtg tgtgtgtg tagagagagg chr6:64322904-64322984 63 1.96e-05 cgcgtgcgtg tgtgtgtg tgtgtgtgtg chr2:86268339-86268419 5 1.96e-05 tgtg tgtgtgtg tgctgagcta chr11:114632947-11463302 61 3.84e-05 gtgatgtgag tgtgtatg tgtgtgtggg chr7:102851182-102851262 54 3.84e-05 tgtttgtatg tgtgtatg tgcgtgtgcg chr14:19608984-19609064 56 5.72e-05 aacatcattt tgtatgtg tgtgtgtgtg chr7:140916272-140916352 2 7.63e-05 g tgggtgtg tgGTGGGGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:44943796-44943876 2e-05 16_[+3]_56 chr6:140075775-140075855 2e-05 53_[+3]_19 chr15:65532606-65532686 2e-05 64_[+3]_8 chr2:28606413-28606493 2e-05 2_[+3]_70 chr2:187396870-187396950 2e-05 5_[+3]_67 chr11:68189153-68189233 2e-05 7_[+3]_65 chr2:145632466-145632546 2e-05 37_[+3]_35 chr10:27945721-27945801 2e-05 52_[+3]_20 chr7:128062264-128062344 2e-05 10_[+3]_62 chr2:170221120-170221200 2e-05 6_[+3]_66 chr10:98400851-98400931 2e-05 1_[+3]_71 chr12:49258165-49258245 2e-05 7_[+3]_65 chr15:77896961-77897041 2e-05 16_[+3]_56 chr10:6172233-6172313 2e-05 21_[+3]_51 chr3:115480518-115480598 2e-05 49_[+3]_23 chr22:35776808-35776888 2e-05 68_[+3]_4 chr14:31527678-31527758 2e-05 67_[+3]_5 chr12:93920761-93920841 2e-05 54_[+3]_18 chr7:127234121-127234201 2e-05 3_[+3]_69 chr1:182303602-182303682 2e-05 67_[+3]_5 chr11:73329929-73330009 2e-05 19_[+3]_53 chr19:16361028-16361108 2e-05 57_[+3]_15 chr16:1031261-1031341 2e-05 35_[+3]_37 chr7:101182576-101182656 2e-05 15_[+3]_57 chr9:75437430-75437510 2e-05 24_[+3]_48 chr15:64295076-64295156 2e-05 55_[+3]_17 chr1:36054779-36054859 2e-05 20_[+3]_52 chr1:19974350-19974430 2e-05 1_[+3]_71 chr1:221939749-221939829 2e-05 63_[+3]_9 chrX:55042352-55042432 2e-05 52_[+3]_20 chr6:149379460-149379540 2e-05 47_[+3]_25 chr20:49078079-49078159 2e-05 48_[+3]_24 chr2:43013115-43013195 2e-05 48_[+3]_24 chr17:65812397-65812477 2e-05 47_[+3]_25 chr2:74796980-74797060 2e-05 57_[+3]_15 chr3:142883668-142883748 2e-05 65_[+3]_7 chr4:3038736-3038816 2e-05 62_[+3]_10 chr1:54603304-54603384 2e-05 54_[+3]_18 chr5:175942543-175942623 2e-05 62_[+3]_10 chrX:151389265-151389345 2e-05 26_[+3]_46 chr17:16388906-16388986 2e-05 56_[+3]_16 chr6:43234687-43234767 2e-05 68_[+3]_4 chr1:3455211-3455291 2e-05 69_[+3]_3 chr15:67124521-67124601 2e-05 12_[+3]_60 chr1:145531998-145532078 2e-05 54_[+3]_18 chrX:151140292-151140372 2e-05 67_[+3]_5 chr3:46483383-46483463 2e-05 59_[+3]_13 chr11:18136924-18137004 2e-05 60_[+3]_12 chr16:85490142-85490222 2e-05 68_[+3]_4 chr13:76579772-76579852 2e-05 56_[+3]_16 chr1:44870830-44870910 2e-05 45_[+3]_27 chr17:36882592-36882672 2e-05 18_[+3]_54 chr6:31561059-31561139 2e-05 72_[+3] chr14:103579671-10357975 2e-05 58_[+3]_14 chr12:7034235-7034315 2e-05 54_[+3]_18 chr12:104264582-10426466 2e-05 50_[+3]_22 chr12:54546507-54546587 2e-05 62_[+3]_10 chr18:7676584-7676664 2e-05 59_[+3]_13 chr11:10387900-10387980 2e-05 19_[+3]_53 chr17:18034089-18034169 2e-05 65_[+3]_7 chr3:184084870-184084950 2e-05 63_[+3]_9 chr3:71460411-71460491 2e-05 49_[+3]_23 chr1:61324062-61324142 2e-05 48_[+3]_24 chr14:101087617-10108769 2e-05 67_[+3]_5 chr13:78167383-78167463 2e-05 62_[+3]_10 chr16:69105915-69105995 2e-05 47_[+3]_25 chr6:64322904-64322984 2e-05 62_[+3]_10 chr2:86268339-86268419 2e-05 4_[+3]_68 chr11:114632947-11463302 3.8e-05 60_[+3]_12 chr7:102851182-102851262 3.8e-05 53_[+3]_19 chr14:19608984-19609064 5.7e-05 55_[+3]_17 chr7:140916272-140916352 7.6e-05 1_[+3]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTGTGTG width=8 seqs=72 chr17:44943796-44943876 ( 17) TGTGTGTG 1 chr6:140075775-140075855 ( 54) TGTGTGTG 1 chr15:65532606-65532686 ( 65) TGTGTGTG 1 chr2:28606413-28606493 ( 3) TGTGTGTG 1 chr2:187396870-187396950 ( 6) TGTGTGTG 1 chr11:68189153-68189233 ( 8) TGTGTGTG 1 chr2:145632466-145632546 ( 38) TGTGTGTG 1 chr10:27945721-27945801 ( 53) TGTGTGTG 1 chr7:128062264-128062344 ( 11) TGTGTGTG 1 chr2:170221120-170221200 ( 7) TGTGTGTG 1 chr10:98400851-98400931 ( 2) TGTGTGTG 1 chr12:49258165-49258245 ( 8) TGTGTGTG 1 chr15:77896961-77897041 ( 17) TGTGTGTG 1 chr10:6172233-6172313 ( 22) TGTGTGTG 1 chr3:115480518-115480598 ( 50) TGTGTGTG 1 chr22:35776808-35776888 ( 69) TGTGTGTG 1 chr14:31527678-31527758 ( 68) TGTGTGTG 1 chr12:93920761-93920841 ( 55) TGTGTGTG 1 chr7:127234121-127234201 ( 4) TGTGTGTG 1 chr1:182303602-182303682 ( 68) TGTGTGTG 1 chr11:73329929-73330009 ( 20) TGTGTGTG 1 chr19:16361028-16361108 ( 58) TGTGTGTG 1 chr16:1031261-1031341 ( 36) TGTGTGTG 1 chr7:101182576-101182656 ( 16) TGTGTGTG 1 chr9:75437430-75437510 ( 25) TGTGTGTG 1 chr15:64295076-64295156 ( 56) TGTGTGTG 1 chr1:36054779-36054859 ( 21) TGTGTGTG 1 chr1:19974350-19974430 ( 2) TGTGTGTG 1 chr1:221939749-221939829 ( 64) TGTGTGTG 1 chrX:55042352-55042432 ( 53) TGTGTGTG 1 chr6:149379460-149379540 ( 48) TGTGTGTG 1 chr20:49078079-49078159 ( 49) TGTGTGTG 1 chr2:43013115-43013195 ( 49) TGTGTGTG 1 chr17:65812397-65812477 ( 48) TGTGTGTG 1 chr2:74796980-74797060 ( 58) TGTGTGTG 1 chr3:142883668-142883748 ( 66) TGTGTGTG 1 chr4:3038736-3038816 ( 63) TGTGTGTG 1 chr1:54603304-54603384 ( 55) TGTGTGTG 1 chr5:175942543-175942623 ( 63) TGTGTGTG 1 chrX:151389265-151389345 ( 27) TGTGTGTG 1 chr17:16388906-16388986 ( 57) TGTGTGTG 1 chr6:43234687-43234767 ( 69) TGTGTGTG 1 chr1:3455211-3455291 ( 70) TGTGTGTG 1 chr15:67124521-67124601 ( 13) TGTGTGTG 1 chr1:145531998-145532078 ( 55) TGTGTGTG 1 chrX:151140292-151140372 ( 68) TGTGTGTG 1 chr3:46483383-46483463 ( 60) TGTGTGTG 1 chr11:18136924-18137004 ( 61) TGTGTGTG 1 chr16:85490142-85490222 ( 69) TGTGTGTG 1 chr13:76579772-76579852 ( 57) TGTGTGTG 1 chr1:44870830-44870910 ( 46) TGTGTGTG 1 chr17:36882592-36882672 ( 19) TGTGTGTG 1 chr6:31561059-31561139 ( 73) TGTGTGTG 1 chr14:103579671-10357975 ( 59) TGTGTGTG 1 chr12:7034235-7034315 ( 55) TGTGTGTG 1 chr12:104264582-10426466 ( 51) TGTGTGTG 1 chr12:54546507-54546587 ( 63) TGTGTGTG 1 chr18:7676584-7676664 ( 60) TGTGTGTG 1 chr11:10387900-10387980 ( 20) TGTGTGTG 1 chr17:18034089-18034169 ( 66) TGTGTGTG 1 chr3:184084870-184084950 ( 64) TGTGTGTG 1 chr3:71460411-71460491 ( 50) TGTGTGTG 1 chr1:61324062-61324142 ( 49) TGTGTGTG 1 chr14:101087617-10108769 ( 68) TGTGTGTG 1 chr13:78167383-78167463 ( 63) TGTGTGTG 1 chr16:69105915-69105995 ( 48) TGTGTGTG 1 chr6:64322904-64322984 ( 63) TGTGTGTG 1 chr2:86268339-86268419 ( 5) TGTGTGTG 1 chr11:114632947-11463302 ( 61) TGTGTATG 1 chr7:102851182-102851262 ( 54) TGTGTATG 1 chr14:19608984-19609064 ( 56) TGTATGTG 1 chr7:140916272-140916352 ( 2) TGGGTGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.11479 E= 1.2e-115 -1281 -1281 -1281 194 -1281 -1281 197 -1281 -1281 -1281 -420 192 -413 -1281 195 -1281 -1281 -1281 -1281 194 -313 -1281 193 -1281 -1281 -1281 -1281 194 -1281 -1281 197 -1281 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 72 E= 1.2e-115 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.013889 0.986111 0.013889 0.000000 0.986111 0.000000 0.000000 0.000000 0.000000 1.000000 0.027778 0.000000 0.972222 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-3 regular expression -------------------------------------------------------------------------------- TGTGTGTG -------------------------------------------------------------------------------- Time 12.17 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTGTGTG MEME-4 width = 8 sites = 66 llr = 698 E-value = 4.9e-101 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::::::: probability G :a:a:a:a matrix T a:a:a:a: bits 2.1 * * 1.9 ******** 1.6 ******** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (15.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTGTGTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:44943796-44943876 41 1.96e-05 agtgtgagtg tgtgtgtg tatttgtgtg chr15:65532606-65532686 73 1.96e-05 tgtgtgtgtg tgtgtgtg chr2:187396870-187396950 22 1.96e-05 tgtgtgtgtg tgtgtgtg agagagagag chr11:68189153-68189233 18 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtg chr2:145632466-145632546 30 1.96e-05 catgtatgtg tgtgtgtg tgtgtgtgtg chr10:27945721-27945801 71 1.96e-05 tgtgtgtgtg tgtgtgtg tg chr7:128062264-128062344 22 1.96e-05 gtgtgtgggg tgtgtgtg tgtgttatgt chr2:170221120-170221200 19 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtg chr10:98400851-98400931 20 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgcgtgtg chr12:49258165-49258245 18 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtg chr15:77896961-77897041 7 1.96e-05 AGTCCg tgtgtgtg tgtgtgtgtg chr10:6172233-6172313 42 1.96e-05 tgtgtgtgtg tgtgtgtg tgtctgtgtg chr3:115480518-115480598 42 1.96e-05 tgtgagtgtg tgtgtgtg tgtgtgtgtg chr22:35776808-35776888 53 1.96e-05 tgtgtgtatg tgtgtgtg tgtgtgtgtg chr14:31527678-31527758 46 1.96e-05 TCCCCATCTC tgtgtgtg tatgtgtgtg chr12:93920761-93920841 35 1.96e-05 TAAGAgtgtg tgtgtgtg tatgtgtgtg chr11:73329929-73330009 2 1.96e-05 g tgtgtgtg tgtgtgtgtg chr19:16361028-16361108 44 1.96e-05 TTTCACCgtg tgtgtgtg agtatgtgtg chr7:101182576-101182656 32 1.96e-05 tgtgcgtatg tgtgtgtg Cttttttttt chr9:75437430-75437510 5 1.96e-05 tgtg tgtgtgtg tgtgtgtgtg chr15:64295076-64295156 72 1.96e-05 tgtgtgtgtg tgtgtgtg t chr1:36054779-36054859 43 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgAT chr1:19974350-19974430 20 1.96e-05 cgtgtgtgtg tgtgtgtg cgtgtgcgcg chr1:221939749-221939829 22 1.96e-05 TTAAAGTTCg tgtgtgtg tgtgtgtgtg chrX:55042352-55042432 45 1.96e-05 tctctctgtg tgtgtgtg tgtgtgtgtg chr6:149379460-149379540 32 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtg chr20:49078079-49078159 65 1.96e-05 tgtgtgtgtg tgtgtgtg CGCGCGCG chr2:43013115-43013195 69 1.96e-05 tgtgtgtgtg tgtgtgtg tgtg chr17:65812397-65812477 34 1.96e-05 Agtgtgtgtg tgtgtgtg tgtgtgtgtg chr2:74796980-74797060 44 1.96e-05 tgtgtatgtg tgtgtgtg catgcgtgtg chr3:142883668-142883748 48 1.96e-05 cgcgtgtgtg tgtgtgtg tgtgtgtgtg chr4:3038736-3038816 37 1.96e-05 TCAGGAGGGg tgtgtgtg tgtgtgtgtg chr1:54603304-54603384 45 1.96e-05 tgtgtgtgtg tgtgtgtg cgtgtgtgtg chr5:175942543-175942623 55 1.96e-05 CTTACTAAAg tgtgtgtg tgtgtgtgtg chr17:16388906-16388986 69 1.96e-05 tgtgtgtgtg tgtgtgtg ttcg chr6:43234687-43234767 61 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtg chr1:3455211-3455291 62 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtg chr15:67124521-67124601 36 1.96e-05 ccaggtggga tgtgtgtg tgaatggggt chr1:145531998-145532078 19 1.96e-05 ATCCtgtgtg tgtgtgtg tgtgtgtgtg chrX:151140292-151140372 60 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtg chr3:46483383-46483463 68 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgt chr11:18136924-18137004 17 1.96e-05 ttggggtttg tgtgtgtg tgtgtgtgtg chr16:85490142-85490222 55 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtg chr13:76579772-76579852 65 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtg chr1:44870830-44870910 12 1.96e-05 AGTGCCtgta tgtgtgtg agtgtgagag chr17:36882592-36882672 43 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtg chr6:31561059-31561139 65 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtg chr14:103579671-10357975 17 1.96e-05 tatgtatgta tgtgtgtg tgtgtgtgtg chr12:7034235-7034315 47 1.96e-05 tgcgtgtgcg tgtgtgtg tgtgtgtgtg chr12:104264582-10426466 73 1.96e-05 tgtgtgtgtg tgtgtgtg chr12:54546507-54546587 73 1.96e-05 tgtgtgtgtg tgtgtgtg chr18:7676584-7676664 52 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtg chr11:10387900-10387980 44 1.96e-05 tgtgtgtgtg tgtgtgtg tgtatgtgct chr17:18034089-18034169 58 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtg chr3:184084870-184084950 13 1.96e-05 TTAGGCTTtg tgtgtgtg tgtgtgtgtg chr3:71460411-71460491 38 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtg chr1:61324062-61324142 1 1.96e-05 . tgtgtgtg tgtgtgtgtg chr14:101087617-10108769 48 1.96e-05 TGGAGTGCAg tgtgtgtg tgtgtgtgtg chr13:78167383-78167463 13 1.96e-05 CAGAGGGGAg tgtgtgtg tgtgtgtgtg chr16:69105915-69105995 18 1.96e-05 GGAGACCgtg tgtgtgtg tgtgtgtgtg chr6:64322904-64322984 15 1.96e-05 CAAGGAtgtg tgtgtgtg tgtgtgtgtg chr2:86268339-86268419 44 1.96e-05 tgtgtgtgtg tgtgtgtg ctgatctaca chr2:28606413-28606493 25 5.69e-05 tgtgtgtgtg tgtctgtg tgtctgtgtc chr7:127234121-127234201 20 5.69e-05 tgcgtgagtg tatgtgtg tgtgtgtgtg chr7:102851182-102851262 11 5.69e-05 tatatgtgtg tatgtgtg tatgaaactt chrX:151389265-151389345 41 5.69e-05 tgtgtgtgtc tgtctgtg cctgtgtgca -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:44943796-44943876 2e-05 40_[+4]_32 chr15:65532606-65532686 2e-05 72_[+4] chr2:187396870-187396950 2e-05 21_[+4]_51 chr11:68189153-68189233 2e-05 17_[+4]_55 chr2:145632466-145632546 2e-05 29_[+4]_43 chr10:27945721-27945801 2e-05 70_[+4]_2 chr7:128062264-128062344 2e-05 21_[+4]_51 chr2:170221120-170221200 2e-05 18_[+4]_54 chr10:98400851-98400931 2e-05 19_[+4]_53 chr12:49258165-49258245 2e-05 17_[+4]_55 chr15:77896961-77897041 2e-05 6_[+4]_66 chr10:6172233-6172313 2e-05 41_[+4]_31 chr3:115480518-115480598 2e-05 41_[+4]_31 chr22:35776808-35776888 2e-05 52_[+4]_20 chr14:31527678-31527758 2e-05 45_[+4]_27 chr12:93920761-93920841 2e-05 34_[+4]_38 chr11:73329929-73330009 2e-05 1_[+4]_71 chr19:16361028-16361108 2e-05 43_[+4]_29 chr7:101182576-101182656 2e-05 31_[+4]_41 chr9:75437430-75437510 2e-05 4_[+4]_68 chr15:64295076-64295156 2e-05 71_[+4]_1 chr1:36054779-36054859 2e-05 42_[+4]_30 chr1:19974350-19974430 2e-05 19_[+4]_53 chr1:221939749-221939829 2e-05 21_[+4]_51 chrX:55042352-55042432 2e-05 44_[+4]_28 chr6:149379460-149379540 2e-05 31_[+4]_41 chr20:49078079-49078159 2e-05 64_[+4]_8 chr2:43013115-43013195 2e-05 68_[+4]_4 chr17:65812397-65812477 2e-05 33_[+4]_39 chr2:74796980-74797060 2e-05 43_[+4]_29 chr3:142883668-142883748 2e-05 47_[+4]_25 chr4:3038736-3038816 2e-05 36_[+4]_36 chr1:54603304-54603384 2e-05 44_[+4]_28 chr5:175942543-175942623 2e-05 54_[+4]_18 chr17:16388906-16388986 2e-05 68_[+4]_4 chr6:43234687-43234767 2e-05 60_[+4]_12 chr1:3455211-3455291 2e-05 61_[+4]_11 chr15:67124521-67124601 2e-05 35_[+4]_37 chr1:145531998-145532078 2e-05 18_[+4]_54 chrX:151140292-151140372 2e-05 59_[+4]_13 chr3:46483383-46483463 2e-05 67_[+4]_5 chr11:18136924-18137004 2e-05 16_[+4]_56 chr16:85490142-85490222 2e-05 54_[+4]_18 chr13:76579772-76579852 2e-05 64_[+4]_8 chr1:44870830-44870910 2e-05 11_[+4]_61 chr17:36882592-36882672 2e-05 42_[+4]_30 chr6:31561059-31561139 2e-05 64_[+4]_8 chr14:103579671-10357975 2e-05 16_[+4]_56 chr12:7034235-7034315 2e-05 46_[+4]_26 chr12:104264582-10426466 2e-05 72_[+4] chr12:54546507-54546587 2e-05 72_[+4] chr18:7676584-7676664 2e-05 51_[+4]_21 chr11:10387900-10387980 2e-05 43_[+4]_29 chr17:18034089-18034169 2e-05 57_[+4]_15 chr3:184084870-184084950 2e-05 12_[+4]_60 chr3:71460411-71460491 2e-05 37_[+4]_35 chr1:61324062-61324142 2e-05 [+4]_72 chr14:101087617-10108769 2e-05 47_[+4]_25 chr13:78167383-78167463 2e-05 12_[+4]_60 chr16:69105915-69105995 2e-05 17_[+4]_55 chr6:64322904-64322984 2e-05 14_[+4]_58 chr2:86268339-86268419 2e-05 43_[+4]_29 chr2:28606413-28606493 5.7e-05 24_[+4]_48 chr7:127234121-127234201 5.7e-05 19_[+4]_53 chr7:102851182-102851262 5.7e-05 10_[+4]_62 chrX:151389265-151389345 5.7e-05 40_[+4]_32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTGTGTG width=8 seqs=66 chr17:44943796-44943876 ( 41) TGTGTGTG 1 chr15:65532606-65532686 ( 73) TGTGTGTG 1 chr2:187396870-187396950 ( 22) TGTGTGTG 1 chr11:68189153-68189233 ( 18) TGTGTGTG 1 chr2:145632466-145632546 ( 30) TGTGTGTG 1 chr10:27945721-27945801 ( 71) TGTGTGTG 1 chr7:128062264-128062344 ( 22) TGTGTGTG 1 chr2:170221120-170221200 ( 19) TGTGTGTG 1 chr10:98400851-98400931 ( 20) TGTGTGTG 1 chr12:49258165-49258245 ( 18) TGTGTGTG 1 chr15:77896961-77897041 ( 7) TGTGTGTG 1 chr10:6172233-6172313 ( 42) TGTGTGTG 1 chr3:115480518-115480598 ( 42) TGTGTGTG 1 chr22:35776808-35776888 ( 53) TGTGTGTG 1 chr14:31527678-31527758 ( 46) TGTGTGTG 1 chr12:93920761-93920841 ( 35) TGTGTGTG 1 chr11:73329929-73330009 ( 2) TGTGTGTG 1 chr19:16361028-16361108 ( 44) TGTGTGTG 1 chr7:101182576-101182656 ( 32) TGTGTGTG 1 chr9:75437430-75437510 ( 5) TGTGTGTG 1 chr15:64295076-64295156 ( 72) TGTGTGTG 1 chr1:36054779-36054859 ( 43) TGTGTGTG 1 chr1:19974350-19974430 ( 20) TGTGTGTG 1 chr1:221939749-221939829 ( 22) TGTGTGTG 1 chrX:55042352-55042432 ( 45) TGTGTGTG 1 chr6:149379460-149379540 ( 32) TGTGTGTG 1 chr20:49078079-49078159 ( 65) TGTGTGTG 1 chr2:43013115-43013195 ( 69) TGTGTGTG 1 chr17:65812397-65812477 ( 34) TGTGTGTG 1 chr2:74796980-74797060 ( 44) TGTGTGTG 1 chr3:142883668-142883748 ( 48) TGTGTGTG 1 chr4:3038736-3038816 ( 37) TGTGTGTG 1 chr1:54603304-54603384 ( 45) TGTGTGTG 1 chr5:175942543-175942623 ( 55) TGTGTGTG 1 chr17:16388906-16388986 ( 69) TGTGTGTG 1 chr6:43234687-43234767 ( 61) TGTGTGTG 1 chr1:3455211-3455291 ( 62) TGTGTGTG 1 chr15:67124521-67124601 ( 36) TGTGTGTG 1 chr1:145531998-145532078 ( 19) TGTGTGTG 1 chrX:151140292-151140372 ( 60) TGTGTGTG 1 chr3:46483383-46483463 ( 68) TGTGTGTG 1 chr11:18136924-18137004 ( 17) TGTGTGTG 1 chr16:85490142-85490222 ( 55) TGTGTGTG 1 chr13:76579772-76579852 ( 65) TGTGTGTG 1 chr1:44870830-44870910 ( 12) TGTGTGTG 1 chr17:36882592-36882672 ( 43) TGTGTGTG 1 chr6:31561059-31561139 ( 65) TGTGTGTG 1 chr14:103579671-10357975 ( 17) TGTGTGTG 1 chr12:7034235-7034315 ( 47) TGTGTGTG 1 chr12:104264582-10426466 ( 73) TGTGTGTG 1 chr12:54546507-54546587 ( 73) TGTGTGTG 1 chr18:7676584-7676664 ( 52) TGTGTGTG 1 chr11:10387900-10387980 ( 44) TGTGTGTG 1 chr17:18034089-18034169 ( 58) TGTGTGTG 1 chr3:184084870-184084950 ( 13) TGTGTGTG 1 chr3:71460411-71460491 ( 38) TGTGTGTG 1 chr1:61324062-61324142 ( 1) TGTGTGTG 1 chr14:101087617-10108769 ( 48) TGTGTGTG 1 chr13:78167383-78167463 ( 13) TGTGTGTG 1 chr16:69105915-69105995 ( 18) TGTGTGTG 1 chr6:64322904-64322984 ( 15) TGTGTGTG 1 chr2:86268339-86268419 ( 44) TGTGTGTG 1 chr2:28606413-28606493 ( 25) TGTCTGTG 1 chr7:127234121-127234201 ( 20) TATGTGTG 1 chr7:102851182-102851262 ( 11) TATGTGTG 1 chrX:151389265-151389345 ( 41) TGTCTGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.14152 E= 4.9e-101 -1269 -1269 -1269 194 -301 -1269 193 -1269 -1269 -1269 -1269 194 -1269 -299 193 -1269 -1269 -1269 -1269 194 -1269 -1269 197 -1269 -1269 -1269 -1269 194 -1269 -1269 197 -1269 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 66 E= 4.9e-101 0.000000 0.000000 0.000000 1.000000 0.030303 0.000000 0.969697 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.030303 0.969697 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-4 regular expression -------------------------------------------------------------------------------- TGTGTGTG -------------------------------------------------------------------------------- Time 15.58 secs. ******************************************************************************** ******************************************************************************** MOTIF CACACACA MEME-5 width = 8 sites = 58 llr = 648 E-value = 1.1e-099 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACACACA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a:a:a:a pos.-specific C a:a:a:a: probability G :::::::: matrix T :::::::: bits 2.1 * ***** 1.9 ******** 1.6 ******** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (16.1 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACACACA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:125080780-125080860 4 1.18e-05 aca cacacaca cacacacaca chrX:16118263-16118343 3 1.18e-05 ca cacacaca cacacacaca chr2:171689146-171689226 43 1.18e-05 cacacacaca cacacaca cacacacaca chr20:25843475-25843555 32 1.18e-05 cacacacaca cacacaca cacacacaca chr15:49197091-49197171 60 1.18e-05 cacacacaca cacacaca cacacacaca chr9:67793657-67793737 65 1.18e-05 cacagagaca cacacaca GCGTcata chr19:51156912-51156992 48 1.18e-05 cacacacaca cacacaca cacacacaca chr17:28930540-28930620 15 1.18e-05 cacacacaca cacacaca cacacacaca chr7:91248130-91248210 42 1.18e-05 tacacacaca cacacaca cacacacaca chr18:141987-142067 57 1.18e-05 Aacacacaca cacacaca gacacgcaca chr12:49581838-49581918 42 1.18e-05 cacacacaca cacacaca cacacacacT chr20:30625758-30625838 71 1.18e-05 cacacacgca cacacaca ca chr2:112356587-112356667 72 1.18e-05 cacacacaca cacacaca c chr1:214387531-214387611 6 1.18e-05 acaca cacacaca cacacacaca chr7:128528668-128528748 23 1.18e-05 catacagaca cacacaca tacacagcca chr1:7992733-7992813 49 1.18e-05 cacagacacg cacacaca cacatacaca chr19:41075895-41075975 4 1.18e-05 aca cacacaca cagacacaca chr17:80141899-80141979 13 1.18e-05 CGCGCGcaca cacacaca cacacacaca chr6:149570251-149570331 44 1.18e-05 cacatacaca cacacaca cacgcacaca chr19:36346570-36346650 20 1.18e-05 cacacacaca cacacaca cacacacaca chr8:144448682-144448762 10 1.18e-05 acacacaca cacacaca cacgcacaca chr2:47054563-47054643 14 1.18e-05 tactctgaca cacacaca cacatacaca chr2:114055383-114055463 14 1.18e-05 cacacacaca cacacaca cagacacaca chr22:38541807-38541887 16 1.18e-05 cacacacaca cacacaca cacacacaca chr1:43502777-43502857 15 1.18e-05 taaacacgca cacacaca tgcgcacaca chr15:43597396-43597476 53 1.18e-05 cacacactca cacacaca catacacaca chr4:148662922-148663002 24 1.18e-05 cacacacgca cacacaca cacacacaca chr10:22480164-22480244 51 1.18e-05 cacacacaca cacacaca catatcacac chrX:70427476-70427556 72 1.18e-05 cacacacacg cacacaca c chr1:225630568-225630648 15 1.18e-05 cacacacaca cacacaca cacacacaca chr19:10078171-10078251 1 1.18e-05 . cacacaca cacagtctca chr22:21895510-21895590 46 1.18e-05 cacacacaca cacacaca cacacacatt chr7:100117957-100118037 15 1.18e-05 accagtcaca cacacaca cacacacaca chr7:137510358-137510438 5 1.18e-05 caga cacacaca cactctcaca chr11:95070647-95070727 41 1.18e-05 cacacacaca cacacaca cacacacacT chr8:27336721-27336801 49 1.18e-05 CTCTCTcaca cacacaca cacatacaca chr1:16364528-16364608 4 1.18e-05 aca cacacaca cacacacaca chr1:182259065-182259145 11 1.18e-05 cacacacaca cacacaca cacacacaca chr8:37693572-37693652 32 1.18e-05 cacacacaca cacacaca cacacCCCAC chr7:129438065-129438145 35 1.18e-05 cacacacaca cacacaca cacacacaca chrX:1654583-1654663 44 1.18e-05 cacagacaca cacacaca cacacacaca chr1:157980165-157980245 69 1.18e-05 cacacacaca cacacaca caca chr12:107498417-10749849 2 1.18e-05 a cacacaca cacacacaca chr22:37908480-37908560 33 1.18e-05 cacacacaca cacacaca cacacacGGG chr2:171199558-171199638 22 1.18e-05 cacacacaca cacacaca cCCCTCTCCA chr7:150699503-150699583 12 1.18e-05 cacacacaca cacacaca cacacacaca chr6:35791163-35791243 66 1.18e-05 tatatataca cacacaca cacacac chr11:122912048-12291212 10 1.18e-05 acacacaca cacacaca cgcacacaca chr6:138111746-138111826 11 1.18e-05 cacacacaca cacacaca cacacacaca chr12:113740860-11374094 73 1.18e-05 cacacacaca cacacaca chr3:119187434-119187514 27 1.18e-05 cacacacaca cacacaca caTGCTCAAC chr16:56311723-56311803 1 1.18e-05 . cacacaca cacacacaca chr22:30223820-30223900 35 1.18e-05 gacacacaca cacacaca cacacaccag chr7:5471521-5471601 54 1.18e-05 catacaggca cacacaca tacaggcaca chr19:33771337-33771417 73 1.18e-05 cacacacata cacacaca chr4:122577569-122577649 69 1.18e-05 cacacacaca cacacaca cGAA chr9:94922835-94922915 11 2.37e-05 tgtacacatg caaacaca tgaacacacc chr13:28923595-28923675 27 3.60e-05 cacacacaca cgcacaca TTCTTGCTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:125080780-125080860 1.2e-05 3_[+5]_69 chrX:16118263-16118343 1.2e-05 2_[+5]_70 chr2:171689146-171689226 1.2e-05 42_[+5]_30 chr20:25843475-25843555 1.2e-05 31_[+5]_41 chr15:49197091-49197171 1.2e-05 59_[+5]_13 chr9:67793657-67793737 1.2e-05 64_[+5]_8 chr19:51156912-51156992 1.2e-05 47_[+5]_25 chr17:28930540-28930620 1.2e-05 14_[+5]_58 chr7:91248130-91248210 1.2e-05 41_[+5]_31 chr18:141987-142067 1.2e-05 56_[+5]_16 chr12:49581838-49581918 1.2e-05 41_[+5]_31 chr20:30625758-30625838 1.2e-05 70_[+5]_2 chr2:112356587-112356667 1.2e-05 71_[+5]_1 chr1:214387531-214387611 1.2e-05 5_[+5]_67 chr7:128528668-128528748 1.2e-05 22_[+5]_50 chr1:7992733-7992813 1.2e-05 48_[+5]_24 chr19:41075895-41075975 1.2e-05 3_[+5]_69 chr17:80141899-80141979 1.2e-05 12_[+5]_60 chr6:149570251-149570331 1.2e-05 43_[+5]_29 chr19:36346570-36346650 1.2e-05 19_[+5]_53 chr8:144448682-144448762 1.2e-05 9_[+5]_63 chr2:47054563-47054643 1.2e-05 13_[+5]_59 chr2:114055383-114055463 1.2e-05 13_[+5]_59 chr22:38541807-38541887 1.2e-05 15_[+5]_57 chr1:43502777-43502857 1.2e-05 14_[+5]_58 chr15:43597396-43597476 1.2e-05 52_[+5]_20 chr4:148662922-148663002 1.2e-05 23_[+5]_49 chr10:22480164-22480244 1.2e-05 50_[+5]_22 chrX:70427476-70427556 1.2e-05 71_[+5]_1 chr1:225630568-225630648 1.2e-05 14_[+5]_58 chr19:10078171-10078251 1.2e-05 [+5]_72 chr22:21895510-21895590 1.2e-05 45_[+5]_27 chr7:100117957-100118037 1.2e-05 14_[+5]_58 chr7:137510358-137510438 1.2e-05 4_[+5]_68 chr11:95070647-95070727 1.2e-05 40_[+5]_32 chr8:27336721-27336801 1.2e-05 48_[+5]_24 chr1:16364528-16364608 1.2e-05 3_[+5]_69 chr1:182259065-182259145 1.2e-05 10_[+5]_62 chr8:37693572-37693652 1.2e-05 31_[+5]_41 chr7:129438065-129438145 1.2e-05 34_[+5]_38 chrX:1654583-1654663 1.2e-05 43_[+5]_29 chr1:157980165-157980245 1.2e-05 68_[+5]_4 chr12:107498417-10749849 1.2e-05 1_[+5]_71 chr22:37908480-37908560 1.2e-05 32_[+5]_40 chr2:171199558-171199638 1.2e-05 21_[+5]_51 chr7:150699503-150699583 1.2e-05 11_[+5]_61 chr6:35791163-35791243 1.2e-05 65_[+5]_7 chr11:122912048-12291212 1.2e-05 9_[+5]_63 chr6:138111746-138111826 1.2e-05 10_[+5]_62 chr12:113740860-11374094 1.2e-05 72_[+5] chr3:119187434-119187514 1.2e-05 26_[+5]_46 chr16:56311723-56311803 1.2e-05 [+5]_72 chr22:30223820-30223900 1.2e-05 34_[+5]_38 chr7:5471521-5471601 1.2e-05 53_[+5]_19 chr19:33771337-33771417 1.2e-05 72_[+5] chr4:122577569-122577649 1.2e-05 68_[+5]_4 chr9:94922835-94922915 2.4e-05 10_[+5]_62 chr13:28923595-28923675 3.6e-05 26_[+5]_46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACACACA width=8 seqs=58 chr6:125080780-125080860 ( 4) CACACACA 1 chrX:16118263-16118343 ( 3) CACACACA 1 chr2:171689146-171689226 ( 43) CACACACA 1 chr20:25843475-25843555 ( 32) CACACACA 1 chr15:49197091-49197171 ( 60) CACACACA 1 chr9:67793657-67793737 ( 65) CACACACA 1 chr19:51156912-51156992 ( 48) CACACACA 1 chr17:28930540-28930620 ( 15) CACACACA 1 chr7:91248130-91248210 ( 42) CACACACA 1 chr18:141987-142067 ( 57) CACACACA 1 chr12:49581838-49581918 ( 42) CACACACA 1 chr20:30625758-30625838 ( 71) CACACACA 1 chr2:112356587-112356667 ( 72) CACACACA 1 chr1:214387531-214387611 ( 6) CACACACA 1 chr7:128528668-128528748 ( 23) CACACACA 1 chr1:7992733-7992813 ( 49) CACACACA 1 chr19:41075895-41075975 ( 4) CACACACA 1 chr17:80141899-80141979 ( 13) CACACACA 1 chr6:149570251-149570331 ( 44) CACACACA 1 chr19:36346570-36346650 ( 20) CACACACA 1 chr8:144448682-144448762 ( 10) CACACACA 1 chr2:47054563-47054643 ( 14) CACACACA 1 chr2:114055383-114055463 ( 14) CACACACA 1 chr22:38541807-38541887 ( 16) CACACACA 1 chr1:43502777-43502857 ( 15) CACACACA 1 chr15:43597396-43597476 ( 53) CACACACA 1 chr4:148662922-148663002 ( 24) CACACACA 1 chr10:22480164-22480244 ( 51) CACACACA 1 chrX:70427476-70427556 ( 72) CACACACA 1 chr1:225630568-225630648 ( 15) CACACACA 1 chr19:10078171-10078251 ( 1) CACACACA 1 chr22:21895510-21895590 ( 46) CACACACA 1 chr7:100117957-100118037 ( 15) CACACACA 1 chr7:137510358-137510438 ( 5) CACACACA 1 chr11:95070647-95070727 ( 41) CACACACA 1 chr8:27336721-27336801 ( 49) CACACACA 1 chr1:16364528-16364608 ( 4) CACACACA 1 chr1:182259065-182259145 ( 11) CACACACA 1 chr8:37693572-37693652 ( 32) CACACACA 1 chr7:129438065-129438145 ( 35) CACACACA 1 chrX:1654583-1654663 ( 44) CACACACA 1 chr1:157980165-157980245 ( 69) CACACACA 1 chr12:107498417-10749849 ( 2) CACACACA 1 chr22:37908480-37908560 ( 33) CACACACA 1 chr2:171199558-171199638 ( 22) CACACACA 1 chr7:150699503-150699583 ( 12) CACACACA 1 chr6:35791163-35791243 ( 66) CACACACA 1 chr11:122912048-12291212 ( 10) CACACACA 1 chr6:138111746-138111826 ( 11) CACACACA 1 chr12:113740860-11374094 ( 73) CACACACA 1 chr3:119187434-119187514 ( 27) CACACACA 1 chr16:56311723-56311803 ( 1) CACACACA 1 chr22:30223820-30223900 ( 35) CACACACA 1 chr7:5471521-5471601 ( 54) CACACACA 1 chr19:33771337-33771417 ( 73) CACACACA 1 chr4:122577569-122577649 ( 69) CACACACA 1 chr9:94922835-94922915 ( 11) CAAACACA 1 chr13:28923595-28923675 ( 27) CGCACACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.4321 E= 1.1e-099 -1250 206 -1250 -1250 201 -1250 -388 -1250 -382 203 -1250 -1250 203 -1250 -1250 -1250 -1250 206 -1250 -1250 203 -1250 -1250 -1250 -1250 206 -1250 -1250 203 -1250 -1250 -1250 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 58 E= 1.1e-099 0.000000 1.000000 0.000000 0.000000 0.982759 0.000000 0.017241 0.000000 0.017241 0.982759 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-5 regular expression -------------------------------------------------------------------------------- CACACACA -------------------------------------------------------------------------------- Time 18.85 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:86268339-86268419 2.25e-05 [+1(1.96e-05)]_21_[+1(1.96e-05)]_\ [+1(1.96e-05)]_21_[+1(1.96e-05)]_6 chr4:122577569-122577649 1.65e-03 [+2(6.02e-05)]_[+2(1.18e-05)]_\ [+2(1.18e-05)]_10_[+5(3.60e-05)]_2_[+2(1.18e-05)]_[+2(1.18e-05)]_\ [+2(1.18e-05)]_[+2(1.18e-05)]_4 chr6:64322904-64322984 2.10e-05 10_[+1(1.96e-05)]_[+1(1.96e-05)]_\ [+1(1.96e-05)]_26_[+1(1.96e-05)]_[+1(1.96e-05)]_4 chr19:33771337-33771417 1.65e-03 12_[+2(1.18e-05)]_[+2(1.18e-05)]_\ [+2(1.18e-05)]_4_[+2(6.02e-05)]_10_[+2(1.18e-05)]_6_[+2(1.18e-05)] chr16:69105915-69105995 2.15e-05 15_[+1(1.96e-05)]_[+1(1.96e-05)]_\ [+1(1.96e-05)]_[+1(1.96e-05)]_[+1(1.96e-05)]_17_[+1(1.96e-05)] chr7:5471521-5471601 1.65e-03 5_[+2(1.18e-05)]_8_[+2(1.18e-05)]_6_\ [+2(1.18e-05)]_8_[+2(1.18e-05)]_8_[+2(1.18e-05)]_5 chr13:78167383-78167463 2.15e-05 12_[+1(1.96e-05)]_[+1(1.96e-05)]_\ [+1(1.96e-05)]_[+1(1.96e-05)]_6_[+1(1.96e-05)]_[+1(1.96e-05)]_14 chr14:101087617-10108769 1.67e-05 [+1(1.96e-05)]_39_[+1(1.96e-05)]_\ [+1(1.96e-05)]_[+1(1.96e-05)]_[+1(1.96e-05)]_1 chr1:61324062-61324142 2.25e-05 [+1(1.96e-05)]_[+1(1.96e-05)]_\ [+1(1.96e-05)]_[+1(1.96e-05)]_[+1(1.96e-05)]_6_[+1(1.96e-05)]_\ [+1(1.96e-05)]_18 chr22:30223820-30223900 1.65e-03 26_[+2(1.18e-05)]_[+2(1.18e-05)]_\ [+2(3.58e-05)]_19_[+2(1.18e-05)]_3 chr16:56311723-56311803 1.21e-07 [+2(1.18e-05)]_[+2(1.18e-05)]_\ [+2(1.18e-05)]_7_[+1(7.72e-05)]_41 chr3:71460411-71460491 2.25e-05 19_[+1(1.96e-05)]_[+1(1.96e-05)]_\ [+1(1.96e-05)]_[+1(1.96e-05)]_[+1(9.60e-05)]_[+1(1.96e-05)]_13 chr3:184084870-184084950 2.25e-05 10_[+1(1.96e-05)]_[+1(1.96e-05)]_\ [+1(1.96e-05)]_[+1(1.96e-05)]_21_[+1(1.96e-05)]_[+1(1.96e-05)]_1 chr3:119187434-119187514 1.38e-03 [+2(1.18e-05)]_[+2(1.18e-05)]_\ [+2(1.18e-05)]_[+2(1.18e-05)]_48 chr17:18034089-18034169 2.10e-05 43_[+1(1.96e-05)]_[+1(1.96e-05)]_\ [+1(1.96e-05)]_[+1(1.96e-05)]_5 chr11:10387900-10387980 2.25e-05 1_[+1(1.96e-05)]_[+1(1.96e-05)]_\ [+1(1.96e-05)]_[+1(1.96e-05)]_[+1(1.96e-05)]_[+1(1.96e-05)]_[+3(3.84e-05)]_\ 23 chr12:113740860-11374094 1.50e-03 1_[+2(1.18e-05)]_8_[+2(1.18e-05)]_\ 35_[+2(1.18e-05)]_[+2(1.18e-05)]_4 chr6:138111746-138111826 4.01e-04 [+2(1.18e-05)]_[+2(1.18e-05)]_\ [+2(1.18e-05)]_[+2(1.18e-05)]_48 chr11:122912048-12291212 1.65e-03 1_[+2(1.18e-05)]_[+2(1.18e-05)]_2_\ [+2(1.18e-05)]_[+2(1.18e-05)]_2_[+2(1.18e-05)]_[+2(1.18e-05)]_27 chr18:7676584-7676664 1.67e-05 41_[+1(1.96e-05)]_[+1(1.96e-05)]_\ [+1(1.96e-05)]_[+1(1.96e-05)]_7 chr6:35791163-35791243 1.25e-03 3_[+2(1.18e-05)]_[+2(1.18e-05)]_\ [+2(1.18e-05)]_[+2(1.18e-05)]_10_[+2(1.18e-05)]_10_[+2(1.18e-05)]_\ [+2(1.18e-05)]_1 chr12:54546507-54546587 1.42e-05 40_[+1(1.96e-05)]_[+1(1.96e-05)]_\ [+1(1.96e-05)]_[+1(1.96e-05)]_[+1(1.96e-05)] chr12:104264582-10426466 1.72e-06 22_[+1(1.96e-05)]_[+1(1.96e-05)]_\ [+1(1.96e-05)]_[+1(1.96e-05)]_[+1(1.96e-05)]_[+1(1.96e-05)]_[+1(1.96e-05)]_\ 2 chr12:7034235-7034315 1.45e-05 28_[+1(1.96e-05)]_10_[+1(1.96e-05)]_\ [+1(1.96e-05)]_[+1(1.96e-05)]_10 chr7:150699503-150699583 1.57e-03 1_[+2(1.18e-05)]_[+2(1.18e-05)]_\ [+2(1.18e-05)]_[+2(1.18e-05)]_47 chr2:171199558-171199638 1.61e-03 1_[+2(1.18e-05)]_[+2(1.18e-05)]_\ [+2(1.18e-05)]_55 chr14:103579671-10357975 2.25e-05 16_[+1(1.96e-05)]_[+1(1.96e-05)]_\ [+1(1.96e-05)]_2_[+1(1.96e-05)]_6_[+1(1.96e-05)]_4_[+1(1.96e-05)]_4 chr22:37908480-37908560 9.01e-04 [+2(1.18e-05)]_[+2(1.18e-05)]_\ [+2(1.18e-05)]_[+2(1.18e-05)]_[+2(1.18e-05)]_40 chr6:31561059-31561139 3.85e-06 44_[+1(1.96e-05)]_[+1(1.96e-05)]_\ [+1(1.96e-05)]_[+1(1.96e-05)]_4 chr12:107498417-10749849 1.43e-03 1_[+2(1.18e-05)]_[+2(1.18e-05)]_63 chr17:36882592-36882672 2.25e-05 6_[+1(3.80e-05)]_2_[+1(1.96e-05)]_8_\ [+1(1.96e-05)]_[+1(1.96e-05)]_[+1(1.96e-05)]_24 chr1:44870830-44870910 2.02e-05 11_[+1(1.96e-05)]_24_[+1(1.96e-05)]_\ 8_[+1(1.96e-05)]_13 chr13:76579772-76579852 4.64e-06 46_[+1(1.96e-05)]_[+1(1.96e-05)]_\ [+1(1.96e-05)]_[+1(1.96e-05)]_2 chr16:85490142-85490222 3.36e-06 44_[+1(1.96e-05)]_[+1(1.96e-05)]_\ [+1(1.96e-05)]_[+1(1.96e-05)]_4 chr1:157980165-157980245 1.63e-03 8_[+2(1.18e-05)]_6_[+2(1.18e-05)]_\ [+2(1.18e-05)]_[+2(1.18e-05)]_[+2(1.18e-05)]_[+2(1.18e-05)]_[+2(1.18e-05)]_\ [+2(1.18e-05)]_2 chr11:18136924-18137004 2.25e-05 14_[+1(1.96e-05)]_[+1(1.96e-05)]_\ [+1(1.96e-05)]_8_[+1(1.96e-05)]_[+1(1.96e-05)]_18 chrX:1654583-1654663 1.06e-03 3_[+2(1.18e-05)]_[+2(1.18e-05)]_\ [+2(2.43e-05)]_[+2(1.18e-05)]_4_[+2(1.18e-05)]_[+2(1.18e-05)]_25 chr7:129438065-129438145 1.65e-03 6_[+2(1.18e-05)]_4_[+2(1.18e-05)]_\ [+2(1.18e-05)]_[+2(1.18e-05)]_[+2(1.18e-05)]_30 chr3:46483383-46483463 1.04e-06 43_[+1(1.96e-05)]_[+1(1.96e-05)]_\ 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[+2(1.18e-05)]_[+2(1.18e-05)]_46 chr5:12110-12190 9.57e-01 80 chr15:83455916-83455996 9.75e-01 80 chr22:17068202-17068282 9.14e-01 80 chr21:46443733-46443813 6.42e-02 80 chr22:19689820-19689900 7.43e-01 80 chr22:19314003-19314083 1.06e-01 80 chr22:18549180-18549260 7.90e-01 80 chr9:125120081-125120161 8.80e-01 80 chr2:243152871-243152951 8.66e-01 80 chr1:24014727-24014807 9.99e-01 80 chr22:21058836-21058916 3.70e-01 80 chrX:60214-60294 2.88e-01 80 chr2:170221120-170221200 2.17e-05 [+1(1.96e-05)]_[+1(1.96e-05)]_\ [+1(1.96e-05)]_[+1(1.96e-05)]_[+1(1.96e-05)]_[+1(1.96e-05)]_[+1(1.96e-05)]_\ 24 chr7:128062264-128062344 2.25e-05 [+1(9.60e-05)]_[+1(1.96e-05)]_5_\ [+1(1.96e-05)]_25_[+1(3.80e-05)]_6_[+1(1.96e-05)]_4 chr22:23105258-23105338 5.08e-01 80 chr11:1016823-1016903 2.40e-03 69_[+1(3.80e-05)]_3 chr11:114632947-11463302 2.25e-05 66_[+1(1.96e-05)]_6 chr2:13064958-13065038 9.97e-01 80 chr9:94922835-94922915 6.77e-03 10_[+5(2.37e-05)]_4_[+2(6.02e-05)]_\ 50 chr22:21024953-21025033 6.60e-01 80 chr13:92314484-92314564 9.96e-01 80 chr19:51156912-51156992 1.63e-03 27_[+2(1.18e-05)]_[+2(1.18e-05)]_\ [+2(1.18e-05)]_[+2(1.18e-05)]_[+2(1.18e-05)]_[+2(1.18e-05)]_5 chr6:11783595-11783675 9.90e-01 80 chr5:70306138-70306218 9.87e-01 80 chr22:20280335-20280415 7.52e-01 80 chr10:27945721-27945801 1.38e-06 30_[+1(1.96e-05)]_[+1(1.96e-05)]_\ [+1(1.96e-05)]_[+1(1.96e-05)]_[+1(1.96e-05)]_[+1(1.96e-05)]_2 chr15:85055732-85055812 2.63e-01 80 chr14:19608984-19609064 1.55e-05 59_[+1(1.96e-05)]_[+1(1.96e-05)]_5 chr16:53074885-53074965 7.18e-01 80 chr1:24617726-24617806 6.96e-01 80 chr2:145632466-145632546 2.10e-05 25_[+1(1.96e-05)]_[+1(1.96e-05)]_\ [+1(1.96e-05)]_[+1(1.96e-05)]_23 chr7:158853170-158853250 7.91e-01 80 chr11:68189153-68189233 2.25e-05 1_[+1(1.96e-05)]_[+1(1.96e-05)]_\ [+1(1.96e-05)]_[+1(1.96e-05)]_7_[+1(1.96e-05)]_3_[+1(1.96e-05)]_\ [+3(3.84e-05)]_13 chr1:205035855-205035935 2.66e-02 47_[+2(2.43e-05)]_25 chr13:91679192-91679272 2.39e-01 80 chr13:91945019-91945099 3.61e-02 80 chr22:22249262-22249342 8.75e-01 80 chr10:47101059-47101139 2.38e-02 29_[+2(2.43e-05)]_43 chr1:241995097-241995177 1.63e-03 10_[+2(1.18e-05)]_[+2(3.58e-05)]_54 chr7:134372203-134372283 1.00e+00 80 chr22:22705927-22706007 5.03e-01 80 chr13:90753281-90753361 3.80e-01 80 chr6:31687209-31687289 7.98e-01 80 chr2:85797502-85797582 9.73e-01 80 chr9:67793657-67793737 1.65e-03 2_[+2(1.18e-05)]_4_[+2(1.18e-05)]_8_\ [+2(1.18e-05)]_[+2(1.18e-05)]_[+2(1.18e-05)]_8_[+2(1.18e-05)]_10 chr13:92065445-92065525 5.78e-01 80 chr15:49197091-49197171 1.65e-03 22_[+2(1.18e-05)]_[+2(1.18e-05)]_9_\ [+2(1.18e-05)]_[+2(1.18e-05)]_[+2(1.18e-05)]_9 chr2:187396870-187396950 1.93e-06 1_[+1(1.96e-05)]_[+1(1.96e-05)]_\ [+1(1.96e-05)]_55 chr20:46524451-46524531 9.91e-01 80 chr2:28606413-28606493 2.25e-05 [+1(1.96e-05)]_4_[+1(1.96e-05)]_4_\ [+4(5.69e-05)]_[+4(5.69e-05)]_4_[+1(5.80e-05)]_28 chr22:23467947-23468027 9.97e-01 80 chr15:65532606-65532686 2.07e-05 28_[+1(1.96e-05)]_20_[+1(1.96e-05)]_\ [+1(1.96e-05)]_[+1(1.96e-05)] chr20:25843475-25843555 1.41e-03 15_[+2(1.18e-05)]_[+2(1.18e-05)]_\ [+2(1.18e-05)]_[+2(1.18e-05)]_[+2(1.18e-05)]_25 chr19:16396040-16396120 1.00e+00 80 chr2:171689146-171689226 1.45e-03 28_[+2(1.18e-05)]_[+2(1.18e-05)]_\ [+2(1.18e-05)]_[+2(1.18e-05)]_20 chr2:149392527-149392607 6.16e-03 9_[+1(9.60e-05)]_63 chrX:16118263-16118343 1.26e-03 [+2(1.18e-05)]_[+2(1.18e-05)]_\ [+2(6.02e-05)]_6_[+2(1.18e-05)]_4_[+2(1.18e-05)]_2_[+2(6.02e-05)]_20 chr13:92230406-92230486 9.66e-01 80 chr21:47032114-47032194 6.52e-01 80 chr19:35625847-35625927 5.58e-01 80 chr6:125080780-125080860 1.64e-03 1_[+2(1.18e-05)]_[+2(1.18e-05)]_63 chr22:19313200-19313280 3.69e-02 80 chr6:140075775-140075855 1.01e-05 51_[+1(1.96e-05)]_[+1(1.96e-05)]_\ [+1(1.96e-05)]_5 chr17:44943796-44943876 2.23e-05 [+3(3.84e-05)]_8_[+1(1.96e-05)]_14_\ [+1(1.96e-05)]_6_[+1(1.96e-05)]_20 chr7:106584609-106584689 6.11e-01 80 chr7:99598051-99598131 6.34e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n07.farnam.hpc.yale.internal ********************************************************************************