******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/LARP7.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr22:36522656-36522736 1.0000 80 chr6:28220544-28220624 1.0000 80 chr8:915521-915601 1.0000 80 chr1:205198291-205198371 1.0000 80 chr12:54688860-54688940 1.0000 80 chr7:151202187-151202267 1.0000 80 chr1:11864473-11864553 1.0000 80 chr22:22809549-22809629 1.0000 80 chr19:427563-427643 1.0000 80 chr10:80904847-80904927 1.0000 80 chr11:73499700-73499780 1.0000 80 chr6:31703477-31703557 1.0000 80 chr16:81659908-81659988 1.0000 80 chr12:49761704-49761784 1.0000 80 chr7:47514582-47514662 1.0000 80 chr9:132446721-132446801 1.0000 80 chr6:47464955-47465035 1.0000 80 chr1:8937797-8937877 1.0000 80 chr18:9917354-9917434 1.0000 80 chr2:178595199-178595279 1.0000 80 chr18:12478480-12478560 1.0000 80 chr7:106805830-106805910 1.0000 80 chr7:104657853-104657933 1.0000 80 chr14:20998983-20999063 1.0000 80 chr19:44007913-44007993 1.0000 80 chr3:135684264-135684344 1.0000 80 chr19:6602942-6603022 1.0000 80 chr2:131965625-131965705 1.0000 80 chr7:75268943-75269023 1.0000 80 chr11:66496412-66496492 1.0000 80 chr7:99062823-99062903 1.0000 80 chr11:65275773-65275853 1.0000 80 chr19:5681584-5681664 1.0000 80 chr18:67506256-67506336 1.0000 80 chr11:8008335-8008415 1.0000 80 chr1:859133-859213 1.0000 80 chr19:6598516-6598596 1.0000 80 chr10:80874229-80874309 1.0000 80 chr7:106256923-106257003 1.0000 80 chr19:49644827-49644907 1.0000 80 chr1:26455238-26455318 1.0000 80 chr1:227505310-227505390 1.0000 80 chr6:31678726-31678806 1.0000 80 chr7:77561807-77561887 1.0000 80 chr12:125348775-12534885 1.0000 80 chr7:141437558-141437638 1.0000 80 chr15:85259886-85259966 1.0000 80 chr17:38601419-38601499 1.0000 80 chr11:8850555-8850635 1.0000 80 chr6:32222738-32222818 1.0000 80 chr4:110071125-110071205 1.0000 80 chr12:93708914-93708994 1.0000 80 chr19:35522156-35522236 1.0000 80 chr7:135619555-135619635 1.0000 80 chr12:53749086-53749166 1.0000 80 chr19:5690932-5691012 1.0000 80 chr1:24071035-24071115 1.0000 80 chr17:58467238-58467318 1.0000 80 chr6:27099358-27099438 1.0000 80 chr20:33872868-33872948 1.0000 80 chr12:54692724-54692804 1.0000 80 chr20:31063286-31063366 1.0000 80 chr7:150945668-150945748 1.0000 80 chr14:69193177-69193257 1.0000 80 chr12:25100018-25100098 1.0000 80 chr4:980563-980643 1.0000 80 chr16:56642355-56642435 1.0000 80 chr7:104873496-104873576 1.0000 80 chr7:156741934-156742014 1.0000 80 chr1:244513803-244513883 1.0000 80 chr17:76732548-76732628 1.0000 80 chr6:158247354-158247434 1.0000 80 chr16:85750044-85750124 1.0000 80 chr6:27112058-27112138 1.0000 80 chr1:24104046-24104126 1.0000 80 chr19:48233112-48233192 1.0000 80 chr19:3154593-3154673 1.0000 80 chr10:72972123-72972203 1.0000 80 chr4:38283467-38283547 1.0000 80 chr1:150981184-150981264 1.0000 80 chr22:21483531-21483611 1.0000 80 chr1:8586126-8586206 1.0000 80 chr11:69490429-69490509 1.0000 80 chr22:21941504-21941584 1.0000 80 chr3:195853578-195853658 1.0000 80 chr6:52516745-52516825 1.0000 80 chr20:62496058-62496138 1.0000 80 chr3:171678554-171678634 1.0000 80 chr16:58232376-58232456 1.0000 80 chr15:45005065-45005145 1.0000 80 chr3:5165031-5165111 1.0000 80 chr19:7580600-7580680 1.0000 80 chr1:204477466-204477546 1.0000 80 chr1:244509688-244509768 1.0000 80 chr7:157318300-157318380 1.0000 80 chr22:21336929-21337009 1.0000 80 chr7:120719120-120719200 1.0000 80 chr20:34204663-34204743 1.0000 80 chr8:125823149-125823229 1.0000 80 chr1:3521722-3521802 1.0000 80 chr10:32669049-32669129 1.0000 80 chr19:18578942-18579022 1.0000 80 chr7:24833806-24833886 1.0000 80 chr2:122369784-122369864 1.0000 80 chr6:140470498-140470578 1.0000 80 chr19:18747264-18747344 1.0000 80 chr1:154580200-154580280 1.0000 80 chr19:4831027-4831107 1.0000 80 chr6:34191589-34191669 1.0000 80 chr3:151990796-151990876 1.0000 80 chr7:120718151-120718231 1.0000 80 chr11:85777791-85777871 1.0000 80 chr11:125463009-12546308 1.0000 80 chr22:21911258-21911338 1.0000 80 chr7:32534631-32534711 1.0000 80 chr19:48053559-48053639 1.0000 80 chr16:27561702-27561782 1.0000 80 chr1:142863281-142863361 1.0000 80 chr2:153573601-153573681 1.0000 80 chr1:44513693-44513773 1.0000 80 chr10:47589358-47589438 1.0000 80 chr1:211752483-211752563 1.0000 80 chr19:38826723-38826803 1.0000 80 chr10:74035341-74035421 1.0000 80 chr6:7199824-7199904 1.0000 80 chr7:100034560-100034640 1.0000 80 chr6:29596207-29596287 1.0000 80 chr1:145438963-145439043 1.0000 80 chr14:77564792-77564872 1.0000 80 chr10:43900937-43901017 1.0000 80 chr7:128114334-128114414 1.0000 80 chr11:76493948-76494028 1.0000 80 chr1:22111181-22111261 1.0000 80 chr1:100817503-100817583 1.0000 80 chr9:138333473-138333553 1.0000 80 chr4:159584624-159584704 1.0000 80 chrX:152599311-152599391 1.0000 80 chr22:22560521-22560601 1.0000 80 chr22:17084119-17084199 1.0000 80 chr12:54781788-54781868 1.0000 80 chr4:6643113-6643193 1.0000 80 chr1:11796371-11796451 1.0000 80 chr8:106330825-106330905 1.0000 80 chr16:56716196-56716276 1.0000 80 chr6:27102525-27102605 1.0000 80 chr17:20772768-20772848 1.0000 80 chr10:25155794-25155874 1.0000 80 chr22:19110322-19110402 1.0000 80 chr7:98871409-98871489 1.0000 80 chr16:15669984-15670064 1.0000 80 chr1:47646575-47646655 1.0000 80 chr4:2239165-2239245 1.0000 80 chr22:23282947-23283027 1.0000 80 chr1:36627461-36627541 1.0000 80 chr6:42712204-42712284 1.0000 80 chr5:172214320-172214400 1.0000 80 chr17:4812225-4812305 1.0000 80 chr6:26332809-26332889 1.0000 80 chr11:65267188-65267268 1.0000 80 chr18:9915921-9916001 1.0000 80 chr22:20187112-20187192 1.0000 80 chr9:123555239-123555319 1.0000 80 chr16:84766079-84766159 1.0000 80 chr11:48131752-48131832 1.0000 80 chr7:156743313-156743393 1.0000 80 chr17:57918517-57918597 1.0000 80 chr6:2725806-2725886 1.0000 80 chr8:130984887-130984967 1.0000 80 chr1:20812515-20812595 1.0000 80 chr16:88864679-88864759 1.0000 80 chr3:46671271-46671351 1.0000 80 chr17:45401490-45401570 1.0000 80 chr12:118499516-11849959 1.0000 80 chr7:35956878-35956958 1.0000 80 chr10:5529098-5529178 1.0000 80 chr16:81110375-81110455 1.0000 80 chr3:195871093-195871173 1.0000 80 chr15:72523020-72523100 1.0000 80 chr17:40374077-40374157 1.0000 80 chr17:38270589-38270669 1.0000 80 chr19:47552318-47552398 1.0000 80 chr5:118773641-118773721 1.0000 80 chr7:150758676-150758756 1.0000 80 chr10:63662424-63662504 1.0000 80 chr10:88514739-88514819 1.0000 80 chr1:231176311-231176391 1.0000 80 chr17:20772072-20772152 1.0000 80 chr1:229695161-229695241 1.0000 80 chr2:97001049-97001129 1.0000 80 chr19:49978044-49978124 1.0000 80 chr17:47068408-47068488 1.0000 80 chr10:72300020-72300100 1.0000 80 chr1:220445318-220445398 1.0000 80 chr7:150779881-150779961 1.0000 80 chr15:96874096-96874176 1.0000 80 chr19:38808173-38808253 1.0000 80 chr18:1465239-1465319 1.0000 80 chr6:31940898-31940978 1.0000 80 chr8:124169892-124169972 1.0000 80 chr1:171710767-171710847 1.0000 80 chr19:41120089-41120169 1.0000 80 chr22:22240925-22241005 1.0000 80 chr6:42059347-42059427 1.0000 80 chr2:10170756-10170836 1.0000 80 chr20:34622991-34623071 1.0000 80 chr4:24585341-24585421 1.0000 80 chr22:18400270-18400350 1.0000 80 chr7:138792436-138792516 1.0000 80 chr6:37392110-37392190 1.0000 80 chr22:19804145-19804225 1.0000 80 chr20:49085175-49085255 1.0000 80 chr6:2846428-2846508 1.0000 80 chr4:140085199-140085279 1.0000 80 chr7:150676025-150676105 1.0000 80 chr19:48216987-48217067 1.0000 80 chr10:75385343-75385423 1.0000 80 chr10:74452911-74452991 1.0000 80 chr22:18359608-18359688 1.0000 80 chr12:125360913-12536099 1.0000 80 chr10:50374696-50374776 1.0000 80 chr16:87812003-87812083 1.0000 80 chr9:139525898-139525978 1.0000 80 chr19:55782105-55782185 1.0000 80 chr16:23859407-23859487 1.0000 80 chr19:46061579-46061659 1.0000 80 chr20:60962456-60962536 1.0000 80 chr1:1311156-1311236 1.0000 80 chr16:31008343-31008423 1.0000 80 chr6:28726872-28726952 1.0000 80 chr10:72576827-72576907 1.0000 80 chr18:8915064-8915144 1.0000 80 chr6:27775433-27775513 1.0000 80 chr19:45086042-45086122 1.0000 80 chr19:3244337-3244417 1.0000 80 chr1:22117706-22117786 1.0000 80 chr1:856608-856688 1.0000 80 chr17:38514672-38514752 1.0000 80 chr16:70380324-70380404 1.0000 80 chrX:48646625-48646705 1.0000 80 chr19:7559876-7559956 1.0000 80 chr15:51895357-51895437 1.0000 80 chr6:13709044-13709124 1.0000 80 chr22:17085601-17085681 1.0000 80 chr22:20008117-20008197 1.0000 80 chr1:207097573-207097653 1.0000 80 chr17:66508203-66508283 1.0000 80 chr17:41276692-41276772 1.0000 80 chr22:21969272-21969352 1.0000 80 chr11:5256699-5256779 1.0000 80 chr1:46269853-46269933 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_LARP7/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/LARP7.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.264 C 0.239 G 0.267 T 0.23 Background letter frequencies (from file dataset with add-one prior applied): A 0.264 C 0.239 G 0.267 T 0.23 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF YCTBYCTC MEME-1 width = 8 sites = 73 llr = 568 E-value = 3.4e-027 ******************************************************************************** -------------------------------------------------------------------------------- Motif YCTBYCTC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 49:46918 probability G :::3:::: matrix T 61a44192 bits 2.1 * 1.9 * 1.7 ** * 1.5 ** ** Relative 1.3 ** *** Entropy 1.1 *** **** (11.2 bits) 0.8 *** **** 0.6 *** **** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTTCCTC consensus C CT T sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTBYCTC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:48216987-48217067 8 1.86e-05 ctcccac tcttcctc cagtctttcg chr20:49085175-49085255 11 1.86e-05 ctcctcctcc tcttcctc ctccttcttc chr1:171710767-171710847 61 1.86e-05 CCAATTCTTC TCTCCCTC AACTGCTCCT chr7:150758676-150758756 59 1.86e-05 TTGActcctt tctccctc atttttcttg chr2:153573601-153573681 6 1.86e-05 ACTTC TCTCCCTC AGAACATATC chr7:150945668-150945748 18 1.86e-05 tctctctctc tcttcctc tttctttccc chr17:38601419-38601499 59 1.86e-05 gctctgcttc tctccctc tctttctgtt chr11:66496412-66496492 1 1.86e-05 . TCTCCCTC CCAGAACATC chr22:36522656-36522736 32 1.86e-05 tcttccttcc tctccctc ctttcctccc chr15:96874096-96874176 44 3.65e-05 CCTCTTTCAT TCTTTCTC TCCGTCTTTT chr7:35956878-35956958 63 3.65e-05 tttctttctt tctttctc tcttccttct chr8:106330825-106330905 42 3.65e-05 tttccccttt tctctctc cctgaccgtt chr22:22560521-22560601 43 3.65e-05 tctctctctc tctctctc tctttcacac chr7:24833806-24833886 12 3.65e-05 tctctctgcc tctttctc tttgacttcc chr4:38283467-38283547 58 3.65e-05 tccttctctt tctttctc cttctacttc chr19:48233112-48233192 64 3.65e-05 cctttccttt tctttctc gctctgcct chr17:76732548-76732628 44 3.65e-05 GACTATGCAG TCTTTCTC CTGAAAACAG chr15:85259886-85259966 67 3.65e-05 tttctctttt tctttctc tttctc chr1:26455238-26455318 27 3.65e-05 ACActctctc tctctctc tctctcacac chr19:44007913-44007993 23 3.65e-05 tatcactcgg tctctctc cctgtctccg chr19:7559876-7559956 11 6.65e-05 ccctccttcc cctccctc cctccttcct chr10:72576827-72576907 32 6.65e-05 caccgccacc tctgcctc ctgggttcaa chr1:229695161-229695241 27 6.65e-05 cactgcaacc tctgcctc ccaggttcaa chr19:47552318-47552398 3 6.65e-05 tc cctccctc ccttccctcc chr16:81110375-81110455 40 6.65e-05 TAGCTCTTCC CCTTCCTC CGCCAGTTCC chr10:5529098-5529178 46 6.65e-05 ggtggccgaa tctgcctc ctacagggcc chr1:24071035-24071115 17 6.65e-05 caggcaattg tctgcctc agcctcccga chr12:125348775-12534885 38 6.65e-05 tttccctcct cctccctc tcctcctcTA chr11:8008335-8008415 21 6.65e-05 ccctctctcg cctccctc tcctcacctc chr7:106805830-106805910 14 6.65e-05 ctatcctttc ccttcctc ccagtcccca chr18:9917354-9917434 17 6.65e-05 cattgcagtc tctgcctc ccgggttcaa chr6:31703477-31703557 69 6.65e-05 CACTCTCAGG CCTCCCTC AACA chr11:76493948-76494028 42 9.53e-05 CAACTAATTC CCTCTCTC TTTCcacaca chr3:171678554-171678634 28 9.53e-05 agagcaagac tctgtctc aaaaaaaaaa chr12:25100018-25100098 51 9.53e-05 GAATGTAAAA CCTCTCTC CCCACTAGGC chr20:31063286-31063366 3 9.53e-05 CT CCTCTCTC CTCGCTGCCG chr2:131965625-131965705 45 9.53e-05 ccgtcttttc cctttctc cctggccacc chr22:17085601-17085681 61 1.06e-04 aagcgactct cctgcctc agcctccaga chr6:2846428-2846508 18 1.06e-04 aagcgattct cctgcctc agcctcctga chr6:37392110-37392190 18 1.06e-04 atgacattct cctgcctc agcctcccga chr16:15669984-15670064 26 1.06e-04 aagtgattct cctgcctc agcctcctga chr7:100034560-100034640 17 1.06e-04 aagagattct cctgcctc agcctcctga chr7:120718151-120718231 57 1.06e-04 acgtgattct cctgcctc agtctcccga chr3:195853578-195853658 38 1.06e-04 acgcgattct cctgcctc agcctcctga chr7:156741934-156742014 65 1.06e-04 aagcgattct cctgcctc agcctccg chr10:72300020-72300100 62 1.35e-04 GTTTGTGATG TCTCCCTT GTCTGTATTG chr6:34191589-34191669 70 1.35e-04 CCACTTTGTC TCTCCCTT TTT chr10:80904847-80904927 63 1.35e-04 tctttctgta tcttcctt tcttctctct chr22:22240925-22241005 20 1.52e-04 ttcttttttt tctttctt ttttcttttt chr7:141437558-141437638 16 1.52e-04 ACGttctttt tctttctt ttttttttta chr2:178595199-178595279 9 1.52e-04 tttctttt tctttctt tcatttctct chr12:54688860-54688940 9 1.52e-04 TCCCTGCT TCTCTCTT CTCCGACACA chrX:152599311-152599391 39 1.81e-04 ttccttcgtt ccttcctt cgtctgctgg chr7:135619555-135619635 25 1.81e-04 CTCTCCCCTG CCTTCCTT TACTTTCTCT chr6:47464955-47465035 55 1.81e-04 tccttttttc ccttcctt tcccttttcc chr20:60962456-60962536 7 2.09e-04 CACATG CCTCTCTT CCGTCCTTAC chr3:151990796-151990876 52 2.09e-04 CCATCTTGAG TCTGTCTT CCACTAGATG chr17:41276692-41276772 27 2.37e-04 TCCTGGCACC TCTTCTTC CACAAGGTCC chr11:48131752-48131832 3 2.65e-04 tt tctttttc ttttcttttt chr19:41120089-41120169 29 2.93e-04 tgccctctcc tctgcttc cccggcctcc chr1:211752483-211752563 13 2.93e-04 GTCTCGGGCG CCTTCTTC GCCCCCCCGC chr10:75385343-75385423 15 3.77e-04 TCTTCCCACT TCTTTCCC AATGTAGCCT chr18:67506256-67506336 26 3.77e-04 ccactcctag tctctccc tagctccact chr1:24104046-24104126 19 3.88e-04 aagcgattct cctgcttc agcctcccga chr10:72972123-72972203 35 4.36e-04 TCGCGAGGAC CCTCCCCC CGGGTCCCCC chr1:231176311-231176391 20 5.05e-04 cacccccatc tctgtccc cacctcctct chr19:18747264-18747344 37 5.22e-04 AGACCCATCT TCTCCTTT CTACCTCCCC chr4:24585341-24585421 48 5.61e-04 TATTTGCTGG CTTCTCTC AACTCCCGCC chr19:6602942-6603022 16 5.78e-04 tgctctcttt tctttttt tttctttgat chr1:859133-859213 53 6.00e-04 GGGCCGCAGC CCTGTCCC GCTGCCGCCG chr1:36627461-36627541 72 6.56e-04 GAGAATATGT CTTGTCTC T chr19:38808173-38808253 35 7.75e-04 AATGTttttt tttttctt attgcttttt chr18:9915921-9916001 62 1.34e-03 TATGGTGTGT TTTTTTTT AATATTTCGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTBYCTC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:48216987-48217067 1.9e-05 7_[+1]_65 chr20:49085175-49085255 1.9e-05 10_[+1]_62 chr1:171710767-171710847 1.9e-05 60_[+1]_12 chr7:150758676-150758756 1.9e-05 58_[+1]_14 chr2:153573601-153573681 1.9e-05 5_[+1]_67 chr7:150945668-150945748 1.9e-05 17_[+1]_55 chr17:38601419-38601499 1.9e-05 58_[+1]_14 chr11:66496412-66496492 1.9e-05 [+1]_72 chr22:36522656-36522736 1.9e-05 31_[+1]_41 chr15:96874096-96874176 3.7e-05 43_[+1]_29 chr7:35956878-35956958 3.7e-05 62_[+1]_10 chr8:106330825-106330905 3.7e-05 41_[+1]_31 chr22:22560521-22560601 3.7e-05 42_[+1]_30 chr7:24833806-24833886 3.7e-05 11_[+1]_61 chr4:38283467-38283547 3.7e-05 57_[+1]_15 chr19:48233112-48233192 3.7e-05 63_[+1]_9 chr17:76732548-76732628 3.7e-05 43_[+1]_29 chr15:85259886-85259966 3.7e-05 66_[+1]_6 chr1:26455238-26455318 3.7e-05 26_[+1]_46 chr19:44007913-44007993 3.7e-05 22_[+1]_50 chr19:7559876-7559956 6.6e-05 10_[+1]_62 chr10:72576827-72576907 6.6e-05 31_[+1]_41 chr1:229695161-229695241 6.6e-05 26_[+1]_46 chr19:47552318-47552398 6.6e-05 2_[+1]_70 chr16:81110375-81110455 6.6e-05 39_[+1]_33 chr10:5529098-5529178 6.6e-05 45_[+1]_27 chr1:24071035-24071115 6.6e-05 16_[+1]_56 chr12:125348775-12534885 6.6e-05 37_[+1]_35 chr11:8008335-8008415 6.6e-05 20_[+1]_52 chr7:106805830-106805910 6.6e-05 13_[+1]_59 chr18:9917354-9917434 6.6e-05 16_[+1]_56 chr6:31703477-31703557 6.6e-05 68_[+1]_4 chr11:76493948-76494028 9.5e-05 41_[+1]_31 chr3:171678554-171678634 9.5e-05 27_[+1]_45 chr12:25100018-25100098 9.5e-05 50_[+1]_22 chr20:31063286-31063366 9.5e-05 2_[+1]_70 chr2:131965625-131965705 9.5e-05 44_[+1]_28 chr22:17085601-17085681 0.00011 60_[+1]_12 chr6:2846428-2846508 0.00011 17_[+1]_55 chr6:37392110-37392190 0.00011 17_[+1]_55 chr16:15669984-15670064 0.00011 25_[+1]_47 chr7:100034560-100034640 0.00011 16_[+1]_56 chr7:120718151-120718231 0.00011 56_[+1]_16 chr3:195853578-195853658 0.00011 37_[+1]_35 chr7:156741934-156742014 0.00011 64_[+1]_8 chr10:72300020-72300100 0.00013 61_[+1]_11 chr6:34191589-34191669 0.00013 69_[+1]_3 chr10:80904847-80904927 0.00013 62_[+1]_10 chr22:22240925-22241005 0.00015 19_[+1]_53 chr7:141437558-141437638 0.00015 15_[+1]_57 chr2:178595199-178595279 0.00015 8_[+1]_64 chr12:54688860-54688940 0.00015 8_[+1]_64 chrX:152599311-152599391 0.00018 38_[+1]_34 chr7:135619555-135619635 0.00018 24_[+1]_48 chr6:47464955-47465035 0.00018 54_[+1]_18 chr20:60962456-60962536 0.00021 6_[+1]_66 chr3:151990796-151990876 0.00021 51_[+1]_21 chr17:41276692-41276772 0.00024 26_[+1]_46 chr11:48131752-48131832 0.00026 2_[+1]_70 chr19:41120089-41120169 0.00029 28_[+1]_44 chr1:211752483-211752563 0.00029 12_[+1]_60 chr10:75385343-75385423 0.00038 14_[+1]_58 chr18:67506256-67506336 0.00038 25_[+1]_47 chr1:24104046-24104126 0.00039 18_[+1]_54 chr10:72972123-72972203 0.00044 34_[+1]_38 chr1:231176311-231176391 0.0005 19_[+1]_53 chr19:18747264-18747344 0.00052 36_[+1]_36 chr4:24585341-24585421 0.00056 47_[+1]_25 chr19:6602942-6603022 0.00058 15_[+1]_57 chr1:859133-859213 0.0006 52_[+1]_20 chr1:36627461-36627541 0.00066 71_[+1]_1 chr19:38808173-38808253 0.00077 34_[+1]_38 chr18:9915921-9916001 0.0013 61_[+1]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTBYCTC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YCTBYCTC width=8 seqs=73 chr19:48216987-48217067 ( 8) TCTTCCTC 1 chr20:49085175-49085255 ( 11) TCTTCCTC 1 chr1:171710767-171710847 ( 61) TCTCCCTC 1 chr7:150758676-150758756 ( 59) TCTCCCTC 1 chr2:153573601-153573681 ( 6) TCTCCCTC 1 chr7:150945668-150945748 ( 18) TCTTCCTC 1 chr17:38601419-38601499 ( 59) TCTCCCTC 1 chr11:66496412-66496492 ( 1) TCTCCCTC 1 chr22:36522656-36522736 ( 32) TCTCCCTC 1 chr15:96874096-96874176 ( 44) TCTTTCTC 1 chr7:35956878-35956958 ( 63) TCTTTCTC 1 chr8:106330825-106330905 ( 42) TCTCTCTC 1 chr22:22560521-22560601 ( 43) TCTCTCTC 1 chr7:24833806-24833886 ( 12) TCTTTCTC 1 chr4:38283467-38283547 ( 58) TCTTTCTC 1 chr19:48233112-48233192 ( 64) TCTTTCTC 1 chr17:76732548-76732628 ( 44) TCTTTCTC 1 chr15:85259886-85259966 ( 67) TCTTTCTC 1 chr1:26455238-26455318 ( 27) TCTCTCTC 1 chr19:44007913-44007993 ( 23) TCTCTCTC 1 chr19:7559876-7559956 ( 11) CCTCCCTC 1 chr10:72576827-72576907 ( 32) TCTGCCTC 1 chr1:229695161-229695241 ( 27) TCTGCCTC 1 chr19:47552318-47552398 ( 3) CCTCCCTC 1 chr16:81110375-81110455 ( 40) CCTTCCTC 1 chr10:5529098-5529178 ( 46) TCTGCCTC 1 chr1:24071035-24071115 ( 17) TCTGCCTC 1 chr12:125348775-12534885 ( 38) CCTCCCTC 1 chr11:8008335-8008415 ( 21) CCTCCCTC 1 chr7:106805830-106805910 ( 14) CCTTCCTC 1 chr18:9917354-9917434 ( 17) TCTGCCTC 1 chr6:31703477-31703557 ( 69) CCTCCCTC 1 chr11:76493948-76494028 ( 42) CCTCTCTC 1 chr3:171678554-171678634 ( 28) TCTGTCTC 1 chr12:25100018-25100098 ( 51) CCTCTCTC 1 chr20:31063286-31063366 ( 3) CCTCTCTC 1 chr2:131965625-131965705 ( 45) CCTTTCTC 1 chr22:17085601-17085681 ( 61) CCTGCCTC 1 chr6:2846428-2846508 ( 18) CCTGCCTC 1 chr6:37392110-37392190 ( 18) CCTGCCTC 1 chr16:15669984-15670064 ( 26) CCTGCCTC 1 chr7:100034560-100034640 ( 17) CCTGCCTC 1 chr7:120718151-120718231 ( 57) CCTGCCTC 1 chr3:195853578-195853658 ( 38) CCTGCCTC 1 chr7:156741934-156742014 ( 65) CCTGCCTC 1 chr10:72300020-72300100 ( 62) TCTCCCTT 1 chr6:34191589-34191669 ( 70) TCTCCCTT 1 chr10:80904847-80904927 ( 63) TCTTCCTT 1 chr22:22240925-22241005 ( 20) TCTTTCTT 1 chr7:141437558-141437638 ( 16) TCTTTCTT 1 chr2:178595199-178595279 ( 9) TCTTTCTT 1 chr12:54688860-54688940 ( 9) TCTCTCTT 1 chrX:152599311-152599391 ( 39) CCTTCCTT 1 chr7:135619555-135619635 ( 25) CCTTCCTT 1 chr6:47464955-47465035 ( 55) CCTTCCTT 1 chr20:60962456-60962536 ( 7) CCTCTCTT 1 chr3:151990796-151990876 ( 52) TCTGTCTT 1 chr17:41276692-41276772 ( 27) TCTTCTTC 1 chr11:48131752-48131832 ( 3) TCTTTTTC 1 chr19:41120089-41120169 ( 29) TCTGCTTC 1 chr1:211752483-211752563 ( 13) CCTTCTTC 1 chr10:75385343-75385423 ( 15) TCTTTCCC 1 chr18:67506256-67506336 ( 26) TCTCTCCC 1 chr1:24104046-24104126 ( 19) CCTGCTTC 1 chr10:72972123-72972203 ( 35) CCTCCCCC 1 chr1:231176311-231176391 ( 20) TCTGTCCC 1 chr19:18747264-18747344 ( 37) TCTCCTTT 1 chr4:24585341-24585421 ( 48) CTTCTCTC 1 chr19:6602942-6603022 ( 16) TCTTTTTT 1 chr1:859133-859213 ( 53) CCTGTCCC 1 chr1:36627461-36627541 ( 72) CTTGTCTC 1 chr19:38808173-38808253 ( 35) TTTTTCTT 1 chr18:9915921-9916001 ( 62) TTTTTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTBYCTC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.76163 E= 3.4e-027 -1283 73 -1283 139 -1283 198 -1283 -207 -1283 -1283 -1283 212 -1283 57 4 69 -1283 123 -1283 93 -1283 190 -1283 -107 -1283 -180 -1283 202 -1283 171 -1283 -7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTBYCTC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 73 E= 3.4e-027 0.000000 0.397260 0.000000 0.602740 0.000000 0.945205 0.000000 0.054795 0.000000 0.000000 0.000000 1.000000 0.000000 0.356164 0.273973 0.369863 0.000000 0.561644 0.000000 0.438356 0.000000 0.890411 0.000000 0.109589 0.000000 0.068493 0.000000 0.931507 0.000000 0.780822 0.000000 0.219178 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTBYCTC MEME-1 regular expression -------------------------------------------------------------------------------- [TC]CT[TCG][CT]CT[CT] -------------------------------------------------------------------------------- Time 5.10 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTKTBTK MEME-2 width = 8 sites = 54 llr = 426 E-value = 8.2e-011 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTKTBTK MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :1:1:3:: probability G :6:5:5:5 matrix T a2a4a3a5 bits 2.1 * * * * 1.9 * * * * 1.7 * * * * 1.5 * * * * Relative 1.3 * * * * Entropy 1.1 * * * ** (11.4 bits) 0.8 * * * ** 0.6 ***** ** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTGTGTG consensus T T T T sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTKTBTK MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:207097573-207097653 73 4.93e-05 tggctatgag tgtgtgtg chr19:3244337-3244417 48 4.93e-05 atgtgtgtag tgtgtgtg gtgtgcatgc chr10:74452911-74452991 40 4.93e-05 tgtgtgtgtg tgtgtgtg AGAGAGAGAG chr19:38808173-38808253 53 4.93e-05 attgcttttt tgtttgtt ttttgagatg chr10:72300020-72300100 28 4.93e-05 ggaatgtgtg tgtgtgtg catgtCTTTT chr10:63662424-63662504 45 4.93e-05 tgtatgtgtg tgtgtgtg tTCATTTGCT chr17:40374077-40374157 67 4.93e-05 ctgtgggggg tgtgtgtg ctgtgt chr1:36627461-36627541 44 4.93e-05 tgtgtgtgtg tgtgtgtg AGAGAGAGAG chr12:54781788-54781868 56 4.93e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtg chr1:100817503-100817583 50 4.93e-05 tgtgtgtgtg tgtgtgtg CGCGCGCGCG chr6:7199824-7199904 53 4.93e-05 GGGTTTTGTG TGTGTGTG TGATTTtttt chr10:74035341-74035421 68 4.93e-05 GGACCAAGTG TGTTTGTT GTTTG chr10:47589358-47589438 51 4.93e-05 tgtgcatgtg tgtgtgtg agtgtgcatg chr1:44513693-44513773 6 4.93e-05 gtgtg tgtgtgtg tgtgtgCACG chr6:140470498-140470578 50 4.93e-05 TCTTTGGTTT TGTTTGTT GTTGATGTTT chr3:5165031-5165111 69 4.93e-05 TAGAATGTGG TGTTTGTT CAGC chr4:110071125-110071205 34 4.93e-05 tgtgtgggtg tgtgtgtg tgtatgtatc chr11:8850555-8850635 48 4.93e-05 ttgtgtgtgg tgtgtgtg gtgtggtgtg chr19:49644827-49644907 63 4.93e-05 tgtgtgagtg tgtgtgtg CAGCGGTGGT chr10:80874229-80874309 60 4.93e-05 tgtgtgtgtg tgtgtgtg tgAAGGTGGG chr18:12478480-12478560 62 4.93e-05 gtagctaggg tgtgtgtg tgaagctagg chr16:81659908-81659988 33 4.93e-05 CTGgtgtgtc tgtgtgtg gtgtgtgagg chr1:205198291-205198371 9 4.93e-05 tgtgtgtg tgtgtgtg tgtgtgtgtg chr17:41276692-41276772 69 9.17e-05 TACCAGCCGG TGTTtttt gttt chr17:57918517-57918597 28 9.17e-05 GGtttgtttt tgtttttg tttttTTATC chr4:6643113-6643193 27 9.17e-05 CTTCGTGTTT TGTTTTTT GACGGTGGCG chr20:34204663-34204743 60 9.17e-05 ggccaatttt tgtgtttt tagtagagac chr7:75268943-75269023 9 9.17e-05 tgcatgcg tgtgtTTT GGTGGTGGGA chr2:131965625-131965705 23 9.17e-05 ctttccccac tgtttttt cccaccgtct chr7:104657853-104657933 20 9.17e-05 GGtttttttt tgtttttt gttttttttt chr2:10170756-10170836 16 1.36e-04 AAGACTCACT TGTTTCTT CACAGGATTA chr12:25100018-25100098 33 1.36e-04 GGCCACATCC TGTGTCTG GAATGTAAAA chr17:38601419-38601499 33 1.36e-04 CCTTATtctg tgtttctg tttcagttgc chr10:80904847-80904927 31 1.36e-04 cccctctgtc tgtgtctt ccttctctgt chr20:49085175-49085255 64 2.15e-04 ggtttgttgg tttttttg aaacagagt chr22:22240925-22241005 33 2.15e-04 ttcttttttc tttttttg agacagagtc chr19:47552318-47552398 46 2.15e-04 ccctccttcc tttttttt ccccgccccg chr11:48131752-48131832 18 2.15e-04 ttcttttctt tttttttg agttggagcc chr7:150945668-150945748 45 2.15e-04 ctTTTCTGCC TTTTTTTT TCCTCCAACT chr7:141437558-141437638 61 2.15e-04 tttttcttgt tttgtttt gttttgtttt chr7:35956878-35956958 19 2.53e-04 ttttcttttc tttttctt tctttctttc chr19:48233112-48233192 34 2.53e-04 ccatttttac tttttctt ttattctaac chr2:178595199-178595279 48 2.53e-04 ttttattttc tttttctt acatgttttt chr7:150758676-150758756 19 2.97e-04 CCCTCCCTCA TCTTTGTT GCTTTCTCTC chr6:34191589-34191669 47 2.97e-04 GCCCCTTTCC TCTGTGTG CTTCCCCACT chr6:47464955-47465035 24 3.59e-04 cttttccttt tctttttt cctttccttc chr16:87812003-87812083 71 3.98e-04 tttctttctt tctttctt tc chr11:76493948-76494028 19 3.98e-04 CCACCAAATC TCTTTCTT ACTAGCAACT chr15:85259886-85259966 45 3.98e-04 ttacttTCTG TCTGTCTG tctctttctc chr19:44007913-44007993 45 3.98e-04 tctccgggtc tctgtctt tCTGGTTTCC chr7:24833806-24833886 34 4.40e-04 acttcctctt tgtctctt cctgtctctc chr19:6602942-6603022 24 4.78e-04 tttctttttt tttctttg atatggagtc chr8:106330825-106330905 21 4.96e-04 ccgtgttatt tttctctt ctctttcccc chr7:135619555-135619635 36 4.96e-04 CTTCCTTTAC TTTCTCTG GCTGTCCTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTKTBTK MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:207097573-207097653 4.9e-05 72_[+2] chr19:3244337-3244417 4.9e-05 47_[+2]_25 chr10:74452911-74452991 4.9e-05 39_[+2]_33 chr19:38808173-38808253 4.9e-05 52_[+2]_20 chr10:72300020-72300100 4.9e-05 27_[+2]_45 chr10:63662424-63662504 4.9e-05 44_[+2]_28 chr17:40374077-40374157 4.9e-05 66_[+2]_6 chr1:36627461-36627541 4.9e-05 43_[+2]_29 chr12:54781788-54781868 4.9e-05 55_[+2]_17 chr1:100817503-100817583 4.9e-05 49_[+2]_23 chr6:7199824-7199904 4.9e-05 52_[+2]_20 chr10:74035341-74035421 4.9e-05 67_[+2]_5 chr10:47589358-47589438 4.9e-05 50_[+2]_22 chr1:44513693-44513773 4.9e-05 5_[+2]_67 chr6:140470498-140470578 4.9e-05 49_[+2]_23 chr3:5165031-5165111 4.9e-05 68_[+2]_4 chr4:110071125-110071205 4.9e-05 33_[+2]_39 chr11:8850555-8850635 4.9e-05 47_[+2]_25 chr19:49644827-49644907 4.9e-05 62_[+2]_10 chr10:80874229-80874309 4.9e-05 59_[+2]_13 chr18:12478480-12478560 4.9e-05 61_[+2]_11 chr16:81659908-81659988 4.9e-05 32_[+2]_40 chr1:205198291-205198371 4.9e-05 8_[+2]_64 chr17:41276692-41276772 9.2e-05 68_[+2]_4 chr17:57918517-57918597 9.2e-05 27_[+2]_45 chr4:6643113-6643193 9.2e-05 26_[+2]_46 chr20:34204663-34204743 9.2e-05 59_[+2]_13 chr7:75268943-75269023 9.2e-05 8_[+2]_64 chr2:131965625-131965705 9.2e-05 22_[+2]_50 chr7:104657853-104657933 9.2e-05 19_[+2]_53 chr2:10170756-10170836 0.00014 15_[+2]_57 chr12:25100018-25100098 0.00014 32_[+2]_40 chr17:38601419-38601499 0.00014 32_[+2]_40 chr10:80904847-80904927 0.00014 30_[+2]_42 chr20:49085175-49085255 0.00021 63_[+2]_9 chr22:22240925-22241005 0.00021 32_[+2]_40 chr19:47552318-47552398 0.00021 45_[+2]_27 chr11:48131752-48131832 0.00021 17_[+2]_55 chr7:150945668-150945748 0.00021 44_[+2]_28 chr7:141437558-141437638 0.00021 60_[+2]_12 chr7:35956878-35956958 0.00025 18_[+2]_54 chr19:48233112-48233192 0.00025 33_[+2]_39 chr2:178595199-178595279 0.00025 47_[+2]_25 chr7:150758676-150758756 0.0003 18_[+2]_54 chr6:34191589-34191669 0.0003 46_[+2]_26 chr6:47464955-47465035 0.00036 23_[+2]_49 chr16:87812003-87812083 0.0004 70_[+2]_2 chr11:76493948-76494028 0.0004 18_[+2]_54 chr15:85259886-85259966 0.0004 44_[+2]_28 chr19:44007913-44007993 0.0004 44_[+2]_28 chr7:24833806-24833886 0.00044 33_[+2]_39 chr19:6602942-6603022 0.00048 23_[+2]_49 chr8:106330825-106330905 0.0005 20_[+2]_52 chr7:135619555-135619635 0.0005 35_[+2]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTKTBTK MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTKTBTK width=8 seqs=54 chr1:207097573-207097653 ( 73) TGTGTGTG 1 chr19:3244337-3244417 ( 48) TGTGTGTG 1 chr10:74452911-74452991 ( 40) TGTGTGTG 1 chr19:38808173-38808253 ( 53) TGTTTGTT 1 chr10:72300020-72300100 ( 28) TGTGTGTG 1 chr10:63662424-63662504 ( 45) TGTGTGTG 1 chr17:40374077-40374157 ( 67) TGTGTGTG 1 chr1:36627461-36627541 ( 44) TGTGTGTG 1 chr12:54781788-54781868 ( 56) TGTGTGTG 1 chr1:100817503-100817583 ( 50) TGTGTGTG 1 chr6:7199824-7199904 ( 53) TGTGTGTG 1 chr10:74035341-74035421 ( 68) TGTTTGTT 1 chr10:47589358-47589438 ( 51) TGTGTGTG 1 chr1:44513693-44513773 ( 6) TGTGTGTG 1 chr6:140470498-140470578 ( 50) TGTTTGTT 1 chr3:5165031-5165111 ( 69) TGTTTGTT 1 chr4:110071125-110071205 ( 34) TGTGTGTG 1 chr11:8850555-8850635 ( 48) TGTGTGTG 1 chr19:49644827-49644907 ( 63) TGTGTGTG 1 chr10:80874229-80874309 ( 60) TGTGTGTG 1 chr18:12478480-12478560 ( 62) TGTGTGTG 1 chr16:81659908-81659988 ( 33) TGTGTGTG 1 chr1:205198291-205198371 ( 9) TGTGTGTG 1 chr17:41276692-41276772 ( 69) TGTTTTTT 1 chr17:57918517-57918597 ( 28) TGTTTTTG 1 chr4:6643113-6643193 ( 27) TGTTTTTT 1 chr20:34204663-34204743 ( 60) TGTGTTTT 1 chr7:75268943-75269023 ( 9) TGTGTTTT 1 chr2:131965625-131965705 ( 23) TGTTTTTT 1 chr7:104657853-104657933 ( 20) TGTTTTTT 1 chr2:10170756-10170836 ( 16) TGTTTCTT 1 chr12:25100018-25100098 ( 33) TGTGTCTG 1 chr17:38601419-38601499 ( 33) TGTTTCTG 1 chr10:80904847-80904927 ( 31) TGTGTCTT 1 chr20:49085175-49085255 ( 64) TTTTTTTG 1 chr22:22240925-22241005 ( 33) TTTTTTTG 1 chr19:47552318-47552398 ( 46) TTTTTTTT 1 chr11:48131752-48131832 ( 18) TTTTTTTG 1 chr7:150945668-150945748 ( 45) TTTTTTTT 1 chr7:141437558-141437638 ( 61) TTTGTTTT 1 chr7:35956878-35956958 ( 19) TTTTTCTT 1 chr19:48233112-48233192 ( 34) TTTTTCTT 1 chr2:178595199-178595279 ( 48) TTTTTCTT 1 chr7:150758676-150758756 ( 19) TCTTTGTT 1 chr6:34191589-34191669 ( 47) TCTGTGTG 1 chr6:47464955-47465035 ( 24) TCTTTTTT 1 chr16:87812003-87812083 ( 71) TCTTTCTT 1 chr11:76493948-76494028 ( 19) TCTTTCTT 1 chr15:85259886-85259966 ( 45) TCTGTCTG 1 chr19:44007913-44007993 ( 45) TCTGTCTT 1 chr7:24833806-24833886 ( 34) TGTCTCTT 1 chr19:6602942-6603022 ( 24) TTTCTTTG 1 chr8:106330825-106330905 ( 21) TTTCTCTT 1 chr7:135619555-135619635 ( 36) TTTCTCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTKTBTK MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.59303 E= 8.2e-011 -1240 -1240 -1240 212 -1240 -88 128 -5 -1240 -1240 -1240 212 -1240 -169 90 89 -1240 -1240 -1240 212 -1240 12 79 27 -1240 -1240 -1240 212 -1240 -1240 101 101 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTKTBTK MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 54 E= 8.2e-011 0.000000 0.000000 0.000000 1.000000 0.000000 0.129630 0.648148 0.222222 0.000000 0.000000 0.000000 1.000000 0.000000 0.074074 0.500000 0.425926 0.000000 0.000000 0.000000 1.000000 0.000000 0.259259 0.462963 0.277778 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.537037 0.462963 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTKTBTK MEME-2 regular expression -------------------------------------------------------------------------------- T[GT]T[GT]T[GTC]T[GT] -------------------------------------------------------------------------------- Time 8.90 secs. ******************************************************************************** ******************************************************************************** MOTIF ACACACAC MEME-3 width = 8 sites = 26 llr = 274 E-value = 6.3e-022 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACACACAC MEME-3 Description -------------------------------------------------------------------------------- Simplified A a:a:a:a: pos.-specific C :a:9:a:a probability G :::::::: matrix T :::1:::: bits 2.1 * * 1.9 *** **** 1.7 *** **** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (15.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACACACAC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:13709044-13709124 9 1.58e-05 GAAAACTc acacacac acacacacac chr9:139525898-139525978 7 1.58e-05 tcgcac acacacac gcatgctcac chr12:125360913-12536099 64 1.58e-05 acacacattg acacacac acacggaga chr7:150676025-150676105 37 1.58e-05 acatacacac acacacac GGAGAGAGAG chr20:34622991-34623071 60 1.58e-05 atacacatat acacacac gacacacata chr8:124169892-124169972 73 1.58e-05 gcgcgcacac acacacac chr8:130984887-130984967 37 1.58e-05 CATTCCATGT acacacac cacacataca chr17:4812225-4812305 58 1.58e-05 acacacccag acacacac acacacacac chr5:172214320-172214400 15 1.58e-05 acatacagag acacacac atacatacac chr6:42712204-42712284 2 1.58e-05 c acacacac acacacCAAA chr22:22560521-22560601 65 1.58e-05 tcacacacac acacacac acacacac chr11:76493948-76494028 69 1.58e-05 acacagtcat acacacac atac chr1:154580200-154580280 1 1.58e-05 . acacacac gcacacacac chr19:18578942-18579022 41 1.58e-05 acacataacc acacacac aaccacaacc chr10:32669049-32669129 62 1.58e-05 gcacacacac acacacac GTTGGTCTGG chr1:3521722-3521802 50 1.58e-05 acacacagtc acacacac tTTACATGGA chr1:244509688-244509768 71 1.58e-05 AACAAAacac acacacac ac chr14:69193177-69193257 22 1.58e-05 cacaacacat acacacac acacacacac chr1:26455238-26455318 73 1.58e-05 actcacattc acacacac chr11:65275773-65275853 61 1.58e-05 acacacacac acacacac acacacacac chr9:132446721-132446801 70 1.58e-05 acacacacac acacacac aca chr7:47514582-47514662 36 1.58e-05 aacacacaac acacacac ctcacacaac chr19:55782105-55782185 57 3.11e-05 tacgcaccac acatacac acCTCATATG chr22:19804145-19804225 67 3.11e-05 tacacaactt acatacac aaacct chr7:120719120-120719200 52 3.11e-05 ccctatcttc acatacac ccatattccc chr8:125823149-125823229 68 4.86e-05 aaatggccta acacaaac ttaat -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:13709044-13709124 1.6e-05 8_[+3]_64 chr9:139525898-139525978 1.6e-05 6_[+3]_66 chr12:125360913-12536099 1.6e-05 63_[+3]_9 chr7:150676025-150676105 1.6e-05 36_[+3]_36 chr20:34622991-34623071 1.6e-05 59_[+3]_13 chr8:124169892-124169972 1.6e-05 72_[+3] chr8:130984887-130984967 1.6e-05 36_[+3]_36 chr17:4812225-4812305 1.6e-05 57_[+3]_15 chr5:172214320-172214400 1.6e-05 14_[+3]_58 chr6:42712204-42712284 1.6e-05 1_[+3]_71 chr22:22560521-22560601 1.6e-05 64_[+3]_8 chr11:76493948-76494028 1.6e-05 68_[+3]_4 chr1:154580200-154580280 1.6e-05 [+3]_72 chr19:18578942-18579022 1.6e-05 40_[+3]_32 chr10:32669049-32669129 1.6e-05 61_[+3]_11 chr1:3521722-3521802 1.6e-05 49_[+3]_23 chr1:244509688-244509768 1.6e-05 70_[+3]_2 chr14:69193177-69193257 1.6e-05 21_[+3]_51 chr1:26455238-26455318 1.6e-05 72_[+3] chr11:65275773-65275853 1.6e-05 60_[+3]_12 chr9:132446721-132446801 1.6e-05 69_[+3]_3 chr7:47514582-47514662 1.6e-05 35_[+3]_37 chr19:55782105-55782185 3.1e-05 56_[+3]_16 chr22:19804145-19804225 3.1e-05 66_[+3]_6 chr7:120719120-120719200 3.1e-05 51_[+3]_21 chr8:125823149-125823229 4.9e-05 67_[+3]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACACACAC width=8 seqs=26 chr6:13709044-13709124 ( 9) ACACACAC 1 chr9:139525898-139525978 ( 7) ACACACAC 1 chr12:125360913-12536099 ( 64) ACACACAC 1 chr7:150676025-150676105 ( 37) ACACACAC 1 chr20:34622991-34623071 ( 60) ACACACAC 1 chr8:124169892-124169972 ( 73) ACACACAC 1 chr8:130984887-130984967 ( 37) ACACACAC 1 chr17:4812225-4812305 ( 58) ACACACAC 1 chr5:172214320-172214400 ( 15) ACACACAC 1 chr6:42712204-42712284 ( 2) ACACACAC 1 chr22:22560521-22560601 ( 65) ACACACAC 1 chr11:76493948-76494028 ( 69) ACACACAC 1 chr1:154580200-154580280 ( 1) ACACACAC 1 chr19:18578942-18579022 ( 41) ACACACAC 1 chr10:32669049-32669129 ( 62) ACACACAC 1 chr1:3521722-3521802 ( 50) ACACACAC 1 chr1:244509688-244509768 ( 71) ACACACAC 1 chr14:69193177-69193257 ( 22) ACACACAC 1 chr1:26455238-26455318 ( 73) ACACACAC 1 chr11:65275773-65275853 ( 61) ACACACAC 1 chr9:132446721-132446801 ( 70) ACACACAC 1 chr7:47514582-47514662 ( 36) ACACACAC 1 chr19:55782105-55782185 ( 57) ACATACAC 1 chr22:19804145-19804225 ( 67) ACATACAC 1 chr7:120719120-120719200 ( 52) ACATACAC 1 chr8:125823149-125823229 ( 68) ACACAAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.98426 E= 6.3e-022 192 -1134 -1134 -1134 -1134 206 -1134 -1134 192 -1134 -1134 -1134 -1134 189 -1134 -99 192 -1134 -1134 -1134 -277 201 -1134 -1134 192 -1134 -1134 -1134 -1134 206 -1134 -1134 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 6.3e-022 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.884615 0.000000 0.115385 1.000000 0.000000 0.000000 0.000000 0.038462 0.961538 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-3 regular expression -------------------------------------------------------------------------------- ACACACAC -------------------------------------------------------------------------------- Time 12.58 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTGTGTG MEME-4 width = 8 sites = 26 llr = 243 E-value = 3.4e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::::::: probability G 1a2a3a:a matrix T 9:8:7:a: bits 2.1 * 1.9 * *** 1.7 * * *** 1.5 **** *** Relative 1.3 **** *** Entropy 1.1 **** *** (13.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTGTGTG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:207097573-207097653 50 1.42e-05 ctgtggagtg tgtgtgtg gtgtgtggct chr19:3244337-3244417 7 1.42e-05 TTGCAT tgtgtgtg tagtgtgtgg chr10:74452911-74452991 32 1.42e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgAG chr10:63662424-63662504 23 1.42e-05 tgtgtgtgtg tgtgtgtg tgtgtgtatg chr17:40374077-40374157 8 1.42e-05 tgtgtgc tgtgtgtg gtgtgtgtgt chr1:36627461-36627541 6 1.42e-05 GCAtg tgtgtgtg tgtatgtgtg chr12:54781788-54781868 64 1.42e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgG chr1:100817503-100817583 42 1.42e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgCG chr6:7199824-7199904 32 1.42e-05 CATATATATG TGTGTGTG CTTGGGTTTT chr10:47589358-47589438 7 1.42e-05 tgctga tgtgtgtg tgtttgtgat chr11:8850555-8850635 39 1.42e-05 atggtgtgtt tgtgtgtg gtgtgtgtgg chr19:49644827-49644907 5 1.42e-05 ggtg tgtgtgtg cgtgtatgtg chr10:80874229-80874309 52 1.42e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtg chr18:12478480-12478560 45 1.42e-05 tgtgtgcatg tgtgtgtg tagctagggt chr1:205198291-205198371 1 1.42e-05 . tgtgtgtg tgtgtgtgtg chr10:72300020-72300100 4 3.07e-05 gtg tgtgggtg gtgtgtggaa chr4:110071125-110071205 26 3.07e-05 tgtgtgtatg tgtgggtg tgtgtgtgtg chr22:21969272-21969352 28 4.72e-05 aaaaattagc tgggtgtg gtggcgggcg chr16:31008343-31008423 44 8.29e-05 AGTGCTACGG TGGGGGTG GGGGGACAGA chr4:140085199-140085279 18 8.29e-05 AGAGAAAGAG TGGGGGTg agagagaaag chr6:32222738-32222818 23 8.29e-05 GAAGAGGGGA TGGGGGTG GGGAGGCGAG chr6:28726872-28726952 15 9.92e-05 aTTTATAAGG TGTGAGTG AAACAACACC chr6:42059347-42059427 30 1.18e-04 agtcagaaat ggtgggtg tatcttaaag chr19:3154593-3154673 52 1.18e-04 tggatggatg ggtgggtg gatggatgat chr7:104657853-104657933 3 1.18e-04 GT GGTGGGTG Gttttttttt chr16:81659908-81659988 64 1.32e-04 ctgttttgag tatgtgtg gtgactatt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:207097573-207097653 1.4e-05 49_[+4]_23 chr19:3244337-3244417 1.4e-05 6_[+4]_66 chr10:74452911-74452991 1.4e-05 31_[+4]_41 chr10:63662424-63662504 1.4e-05 22_[+4]_50 chr17:40374077-40374157 1.4e-05 7_[+4]_65 chr1:36627461-36627541 1.4e-05 5_[+4]_67 chr12:54781788-54781868 1.4e-05 63_[+4]_9 chr1:100817503-100817583 1.4e-05 41_[+4]_31 chr6:7199824-7199904 1.4e-05 31_[+4]_41 chr10:47589358-47589438 1.4e-05 6_[+4]_66 chr11:8850555-8850635 1.4e-05 38_[+4]_34 chr19:49644827-49644907 1.4e-05 4_[+4]_68 chr10:80874229-80874309 1.4e-05 51_[+4]_21 chr18:12478480-12478560 1.4e-05 44_[+4]_28 chr1:205198291-205198371 1.4e-05 [+4]_72 chr10:72300020-72300100 3.1e-05 3_[+4]_69 chr4:110071125-110071205 3.1e-05 25_[+4]_47 chr22:21969272-21969352 4.7e-05 27_[+4]_45 chr16:31008343-31008423 8.3e-05 43_[+4]_29 chr4:140085199-140085279 8.3e-05 17_[+4]_55 chr6:32222738-32222818 8.3e-05 22_[+4]_50 chr6:28726872-28726952 9.9e-05 14_[+4]_58 chr6:42059347-42059427 0.00012 29_[+4]_43 chr19:3154593-3154673 0.00012 51_[+4]_21 chr7:104657853-104657933 0.00012 2_[+4]_70 chr16:81659908-81659988 0.00013 63_[+4]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTGTGTG width=8 seqs=26 chr1:207097573-207097653 ( 50) TGTGTGTG 1 chr19:3244337-3244417 ( 7) TGTGTGTG 1 chr10:74452911-74452991 ( 32) TGTGTGTG 1 chr10:63662424-63662504 ( 23) TGTGTGTG 1 chr17:40374077-40374157 ( 8) TGTGTGTG 1 chr1:36627461-36627541 ( 6) TGTGTGTG 1 chr12:54781788-54781868 ( 64) TGTGTGTG 1 chr1:100817503-100817583 ( 42) TGTGTGTG 1 chr6:7199824-7199904 ( 32) TGTGTGTG 1 chr10:47589358-47589438 ( 7) TGTGTGTG 1 chr11:8850555-8850635 ( 39) TGTGTGTG 1 chr19:49644827-49644907 ( 5) TGTGTGTG 1 chr10:80874229-80874309 ( 52) TGTGTGTG 1 chr18:12478480-12478560 ( 45) TGTGTGTG 1 chr1:205198291-205198371 ( 1) TGTGTGTG 1 chr10:72300020-72300100 ( 4) TGTGGGTG 1 chr4:110071125-110071205 ( 26) TGTGGGTG 1 chr22:21969272-21969352 ( 28) TGGGTGTG 1 chr16:31008343-31008423 ( 44) TGGGGGTG 1 chr4:140085199-140085279 ( 18) TGGGGGTG 1 chr6:32222738-32222818 ( 23) TGGGGGTG 1 chr6:28726872-28726952 ( 15) TGTGAGTG 1 chr6:42059347-42059427 ( 30) GGTGGGTG 1 chr19:3154593-3154673 ( 52) GGTGGGTG 1 chr7:104657853-104657933 ( 3) GGTGGGTG 1 chr16:81659908-81659988 ( 64) TATGTGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.98426 E= 3.4e-007 -1134 -1134 -121 194 -277 -1134 185 -1134 -1134 -1134 -80 188 -1134 -1134 190 -1134 -277 -1134 20 151 -1134 -1134 190 -1134 -1134 -1134 -1134 212 -1134 -1134 190 -1134 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 3.4e-007 0.000000 0.000000 0.115385 0.884615 0.038462 0.000000 0.961538 0.000000 0.000000 0.000000 0.153846 0.846154 0.000000 0.000000 1.000000 0.000000 0.038462 0.000000 0.307692 0.653846 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-4 regular expression -------------------------------------------------------------------------------- TGTG[TG]GTG -------------------------------------------------------------------------------- Time 16.23 secs. ******************************************************************************** ******************************************************************************** MOTIF GARRRAGA MEME-5 width = 8 sites = 88 llr = 594 E-value = 5.1e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GARRRAGA MEME-5 Description -------------------------------------------------------------------------------- Simplified A 3946692a pos.-specific C :::::::: probability G 7164418: matrix T :::::::: bits 2.1 1.9 * 1.7 * 1.5 * * Relative 1.3 * *** Entropy 1.1 *** *** (9.7 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAGAAAGA consensus A AGG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARRRAGA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:38514672-38514752 24 2.44e-05 aaggacgaaa gagaaaga aagggaagga chr18:8915064-8915144 60 2.44e-05 aaatcaaaga gagaaaga aagagagaga chr4:140085199-140085279 57 2.44e-05 gagggagaga gagaaaga gggaggaagg chr10:88514739-88514819 57 2.44e-05 AAGGAAACTT GAGAAAGA AAAGTGACCA chr5:118773641-118773721 21 2.44e-05 ggcagagaga gagaaaga tacagagagt chr1:20812515-20812595 10 2.44e-05 ggagaggag gagaaaga agaaaaggtg chr6:2725806-2725886 13 2.44e-05 gaaaaagaaa gagaaaga aagaaagaaa chr4:2239165-2239245 36 2.44e-05 ggaaagaaga gagaaaga gagagaaagg chr10:25155794-25155874 69 2.44e-05 aggaagagat gagaaaga aagG chr19:48053559-48053639 72 2.44e-05 aagaaggaaa gagaaaga g chr19:7580600-7580680 25 2.44e-05 ttggaacaca gagaaaga gatggggaca chr14:20998983-20999063 50 2.44e-05 aagagagaaa gagaaaga aagaaaggaa chr17:66508203-66508283 20 9.79e-05 TAGCTGCGCG GAGAGAGA GCGAAGAGCA chr22:20008117-20008197 65 9.79e-05 GGATGACCAA GAGGAAGA TGGCCAGG chr6:13709044-13709124 55 9.79e-05 AACAAGACAA GAGGAAGA GGCAGTAGAA chrX:48646625-48646705 27 9.79e-05 gagatgggaa gagagaga cagagacaca chr19:45086042-45086122 53 9.79e-05 ggaagaagaa gaggaaga ggaagaagaa chr10:50374696-50374776 63 9.79e-05 AAGGGTTAGT GAGAGAGA CAGAAACATG chr10:74452911-74452991 53 9.79e-05 gtgtgAGAGA GAGAGAGA CAGAGTGTGA chr7:150676025-150676105 50 9.79e-05 cacacGGAGA GAGAGAGA GCCCTCTGTG chr1:220445318-220445398 55 9.79e-05 GCTGGGTCGA GAGGAAGA CAACACAAAT chr17:47068408-47068488 52 9.79e-05 aagcaacaaa gaaaaaga aaaattgaaa chr15:72523020-72523100 33 9.79e-05 CAGACTTAAG GAGGAAGA GGGGAAAACG chr1:36627461-36627541 53 9.79e-05 gtgtgtgtgA GAGAGAGA GGAGAATATG chr22:23282947-23283027 59 9.79e-05 agaagaggag gaggaaga agaagacgaa chr1:47646575-47646655 20 9.79e-05 gcaaacagga gagagaga ggcagaggat chr4:159584624-159584704 46 9.79e-05 gaaagaagga gagagaga ggaagagaca chr14:77564792-77564872 14 9.79e-05 gtaggggaga gaggaaga ggagcgagta chr2:122369784-122369864 57 9.79e-05 ggagttatag gaggaaga ggaactagag chr6:52516745-52516825 66 9.79e-05 aagaaagaaa gaaaaaga aagaaag chr6:31678726-31678806 53 9.79e-05 AACGGGGGAa gagagaga agggaagaga chr7:106256923-106257003 50 9.79e-05 AGAGGGGGAA GAGGAAGA GGTATGGGTA chr19:6598516-6598596 69 9.79e-05 gagtcaagga gagagaga gaaa chr22:22809549-22809629 5 9.79e-05 gaaa gagagaga gggagggaga chr16:23859407-23859487 22 1.72e-04 CAGGGAACAG GAAGAAGA GGGTGTGAGG chr6:26332809-26332889 40 1.72e-04 CGGGGTTGTG GAAAGAGA TTAGGGGGCT chr5:172214320-172214400 60 1.72e-04 cagacacaca gaaagaga cacacagaca chr17:20772768-20772848 19 1.72e-04 atggagaagc gaaagaga atggcaagga chr3:171678554-171678634 59 1.72e-04 agaaagaaaa gaaaGaga aaggaaggaa chr16:85750044-85750124 20 1.72e-04 aggaagagag gagggaga ggaagggagg chr12:53749086-53749166 40 1.72e-04 agtggggagg gagggaga aaggaaggaa chr1:227505310-227505390 27 1.72e-04 CACTTCCCGG GAAGAAGA AAAACAGAAA chr1:142863281-142863361 18 1.96e-04 aattaaaaag aagaaaga tctcaaatca chr17:45401490-45401570 62 2.21e-04 TGCGAGGGAG GAAGGAGA ACAGTGGTGG chr1:11796371-11796451 61 2.21e-04 CCCCACGCAA GAAGGAGA TGGGCAGGCA chr16:27561702-27561782 65 2.21e-04 GTAGGGTGGG GAAGGAGA AGTAGAGG chr19:46061579-46061659 11 2.93e-04 gactgtctca aaaaaaga aaagaaaaga chr6:42059347-42059427 1 2.93e-04 . aaaaaaga aaagaaaaaa chr3:46671271-46671351 11 2.93e-04 aggaggagag aaggaaga gaggaggagg chr11:65267188-65267268 70 2.93e-04 gaagcagaag aaaaaaga caa chr7:98871409-98871489 55 2.93e-04 ggagagagga aaggaaga cagagaggaa chr1:22111181-22111261 7 2.93e-04 GCTTGA AAGGAAGA CCTTGCCgcc chr19:38826723-38826803 65 2.93e-04 ATGGCATGGG AAGGAAGA GTAAGAAG chr11:5256699-5256779 52 3.17e-04 gagaggagag gagaaaaa aggaggggag chr9:138333473-138333553 57 4.15e-04 catgctctgt aaaagaga cagtggctct chr11:125463009-12546308 28 4.15e-04 AACAGAGCGT GGGAAAGA CTGGGTCCTG chr2:10170756-10170836 68 6.84e-04 gaagggggag gagggaaa agggg chr7:156743313-156743393 58 6.84e-04 TGCAGAAGAT GAAGAAAA GAGTGAAAAT chr7:157318300-157318380 57 6.84e-04 TGCACCGTCT GAGGGAAA AGAGGGCCGT chr19:35522156-35522236 20 6.84e-04 gcgagagaca gagaaggA CTCGGAGCGC chr19:49978044-49978124 54 7.83e-04 ggacagagga gggggaga tggacagagg chrX:152599311-152599391 10 7.83e-04 GATGCCCAA GGGGGAGA GGTCCCTtcc chr6:29596207-29596287 21 7.83e-04 CTGAGGATGT GGGGGAGA GGAAACGGTT chr6:32222738-32222818 67 7.83e-04 AGAGGAGTGG GGAGAAGA TTTAGG chr3:5165031-5165111 32 9.06e-04 GGAATGGGTG GAAGGAAA ATTGCACTGA chr7:104873496-104873576 35 9.06e-04 ggaaggaaag gaaggaaa gaaggaagga chr15:51895357-51895437 63 9.78e-04 aagataggca aagagaaa agacacaaat chr7:128114334-128114414 14 9.78e-04 accaaaaaac aaaaaaaa aacaaaaaaa chr11:85777791-85777871 1 9.78e-04 . AAAAAAAA ACAAAAAAAA chr6:158247354-158247434 21 9.78e-04 ctaaaaatac aaaaaaaa ttagctgggc chr7:99062823-99062903 61 9.78e-04 cgccatctca aaaaaaaa atgataaaaa chr1:11864473-11864553 34 9.78e-04 ctccatctca aaaaaaaa aacaaaaaca chr7:151202187-151202267 70 9.78e-04 aaacaaaaca aaaaaaaa aac chr17:38270589-38270669 63 1.15e-03 aggctgaggc agaaaaga attgcttgaa chr19:4831027-4831107 16 1.15e-03 CCTGGGTGTC AGGGAAGA GTTTGGGGTG chr20:33872868-33872948 41 1.15e-03 CAGGTTTGGG GAAAGGGA TGAGTCCAGC chr9:132446721-132446801 23 1.15e-03 cacacccaac agaaaaga taccagaaat chr17:20772072-20772152 52 1.27e-03 aaagatggtg gggaaaaa agtttttggg chr8:125823149-125823229 2 1.27e-03 c aaagaaaa caagaaaaca chr19:427563-427643 41 1.37e-03 ACGGCGCAGG GAAGGGGA ATTGCGCACG chr12:118499516-11849959 72 1.54e-03 AAATGGGGGC GGGAGAAA T chr20:62496058-62496138 67 1.54e-03 aaaacaaaca aaaaagga ccaact chr7:75268943-75269023 63 1.54e-03 GGAGGTGGTG AAAAAGGA GGGACAGATG chr1:46269853-46269933 6 2.01e-03 TTCGC GGGGAGGA GTGGGAGGTC chr1:8586126-8586206 67 2.01e-03 GGGGCCTTAG AAAGGGGA TCCAAG chr7:77561807-77561887 59 2.01e-03 GTGGAGAATG GAGAAAGG GGACagagag chr11:8008335-8008415 70 2.16e-03 tcaaagcagc aggagaaa tcc chr1:150981184-150981264 10 2.45e-03 ACGGGGTCC AGGAAGGA CGAAGACGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARRRAGA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:38514672-38514752 2.4e-05 23_[+5]_49 chr18:8915064-8915144 2.4e-05 59_[+5]_13 chr4:140085199-140085279 2.4e-05 56_[+5]_16 chr10:88514739-88514819 2.4e-05 56_[+5]_16 chr5:118773641-118773721 2.4e-05 20_[+5]_52 chr1:20812515-20812595 2.4e-05 9_[+5]_63 chr6:2725806-2725886 2.4e-05 12_[+5]_60 chr4:2239165-2239245 2.4e-05 35_[+5]_37 chr10:25155794-25155874 2.4e-05 68_[+5]_4 chr19:48053559-48053639 2.4e-05 71_[+5]_1 chr19:7580600-7580680 2.4e-05 24_[+5]_48 chr14:20998983-20999063 2.4e-05 49_[+5]_23 chr17:66508203-66508283 9.8e-05 19_[+5]_53 chr22:20008117-20008197 9.8e-05 64_[+5]_8 chr6:13709044-13709124 9.8e-05 54_[+5]_18 chrX:48646625-48646705 9.8e-05 26_[+5]_46 chr19:45086042-45086122 9.8e-05 52_[+5]_20 chr10:50374696-50374776 9.8e-05 62_[+5]_10 chr10:74452911-74452991 9.8e-05 52_[+5]_20 chr7:150676025-150676105 9.8e-05 49_[+5]_23 chr1:220445318-220445398 9.8e-05 54_[+5]_18 chr17:47068408-47068488 9.8e-05 51_[+5]_21 chr15:72523020-72523100 9.8e-05 32_[+5]_40 chr1:36627461-36627541 9.8e-05 52_[+5]_20 chr22:23282947-23283027 9.8e-05 58_[+5]_14 chr1:47646575-47646655 9.8e-05 19_[+5]_53 chr4:159584624-159584704 9.8e-05 45_[+5]_27 chr14:77564792-77564872 9.8e-05 13_[+5]_59 chr2:122369784-122369864 9.8e-05 56_[+5]_16 chr6:52516745-52516825 9.8e-05 65_[+5]_7 chr6:31678726-31678806 9.8e-05 52_[+5]_20 chr7:106256923-106257003 9.8e-05 49_[+5]_23 chr19:6598516-6598596 9.8e-05 68_[+5]_4 chr22:22809549-22809629 9.8e-05 4_[+5]_68 chr16:23859407-23859487 0.00017 21_[+5]_51 chr6:26332809-26332889 0.00017 39_[+5]_33 chr5:172214320-172214400 0.00017 59_[+5]_13 chr17:20772768-20772848 0.00017 18_[+5]_54 chr3:171678554-171678634 0.00017 58_[+5]_14 chr16:85750044-85750124 0.00017 19_[+5]_53 chr12:53749086-53749166 0.00017 39_[+5]_33 chr1:227505310-227505390 0.00017 26_[+5]_46 chr1:142863281-142863361 0.0002 17_[+5]_55 chr17:45401490-45401570 0.00022 61_[+5]_11 chr1:11796371-11796451 0.00022 60_[+5]_12 chr16:27561702-27561782 0.00022 64_[+5]_8 chr19:46061579-46061659 0.00029 10_[+5]_62 chr6:42059347-42059427 0.00029 [+5]_72 chr3:46671271-46671351 0.00029 10_[+5]_62 chr11:65267188-65267268 0.00029 69_[+5]_3 chr7:98871409-98871489 0.00029 54_[+5]_18 chr1:22111181-22111261 0.00029 6_[+5]_66 chr19:38826723-38826803 0.00029 64_[+5]_8 chr11:5256699-5256779 0.00032 51_[+5]_21 chr9:138333473-138333553 0.00041 56_[+5]_16 chr11:125463009-12546308 0.00041 27_[+5]_45 chr2:10170756-10170836 0.00068 67_[+5]_5 chr7:156743313-156743393 0.00068 57_[+5]_15 chr7:157318300-157318380 0.00068 56_[+5]_16 chr19:35522156-35522236 0.00068 19_[+5]_53 chr19:49978044-49978124 0.00078 53_[+5]_19 chrX:152599311-152599391 0.00078 9_[+5]_63 chr6:29596207-29596287 0.00078 20_[+5]_52 chr6:32222738-32222818 0.00078 66_[+5]_6 chr3:5165031-5165111 0.00091 31_[+5]_41 chr7:104873496-104873576 0.00091 34_[+5]_38 chr15:51895357-51895437 0.00098 62_[+5]_10 chr7:128114334-128114414 0.00098 13_[+5]_59 chr11:85777791-85777871 0.00098 [+5]_72 chr6:158247354-158247434 0.00098 20_[+5]_52 chr7:99062823-99062903 0.00098 60_[+5]_12 chr1:11864473-11864553 0.00098 33_[+5]_39 chr7:151202187-151202267 0.00098 69_[+5]_3 chr17:38270589-38270669 0.0012 62_[+5]_10 chr19:4831027-4831107 0.0012 15_[+5]_57 chr20:33872868-33872948 0.0012 40_[+5]_32 chr9:132446721-132446801 0.0012 22_[+5]_50 chr17:20772072-20772152 0.0013 51_[+5]_21 chr8:125823149-125823229 0.0013 1_[+5]_71 chr19:427563-427643 0.0014 40_[+5]_32 chr12:118499516-11849959 0.0015 71_[+5]_1 chr20:62496058-62496138 0.0015 66_[+5]_6 chr7:75268943-75269023 0.0015 62_[+5]_10 chr1:46269853-46269933 0.002 5_[+5]_67 chr1:8586126-8586206 0.002 66_[+5]_6 chr7:77561807-77561887 0.002 58_[+5]_14 chr11:8008335-8008415 0.0022 69_[+5]_3 chr1:150981184-150981264 0.0025 9_[+5]_63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARRRAGA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GARRRAGA width=8 seqs=88 chr17:38514672-38514752 ( 24) GAGAAAGA 1 chr18:8915064-8915144 ( 60) GAGAAAGA 1 chr4:140085199-140085279 ( 57) GAGAAAGA 1 chr10:88514739-88514819 ( 57) GAGAAAGA 1 chr5:118773641-118773721 ( 21) GAGAAAGA 1 chr1:20812515-20812595 ( 10) GAGAAAGA 1 chr6:2725806-2725886 ( 13) GAGAAAGA 1 chr4:2239165-2239245 ( 36) GAGAAAGA 1 chr10:25155794-25155874 ( 69) GAGAAAGA 1 chr19:48053559-48053639 ( 72) GAGAAAGA 1 chr19:7580600-7580680 ( 25) GAGAAAGA 1 chr14:20998983-20999063 ( 50) GAGAAAGA 1 chr17:66508203-66508283 ( 20) GAGAGAGA 1 chr22:20008117-20008197 ( 65) GAGGAAGA 1 chr6:13709044-13709124 ( 55) GAGGAAGA 1 chrX:48646625-48646705 ( 27) GAGAGAGA 1 chr19:45086042-45086122 ( 53) GAGGAAGA 1 chr10:50374696-50374776 ( 63) GAGAGAGA 1 chr10:74452911-74452991 ( 53) GAGAGAGA 1 chr7:150676025-150676105 ( 50) GAGAGAGA 1 chr1:220445318-220445398 ( 55) GAGGAAGA 1 chr17:47068408-47068488 ( 52) GAAAAAGA 1 chr15:72523020-72523100 ( 33) GAGGAAGA 1 chr1:36627461-36627541 ( 53) GAGAGAGA 1 chr22:23282947-23283027 ( 59) GAGGAAGA 1 chr1:47646575-47646655 ( 20) GAGAGAGA 1 chr4:159584624-159584704 ( 46) GAGAGAGA 1 chr14:77564792-77564872 ( 14) GAGGAAGA 1 chr2:122369784-122369864 ( 57) GAGGAAGA 1 chr6:52516745-52516825 ( 66) GAAAAAGA 1 chr6:31678726-31678806 ( 53) GAGAGAGA 1 chr7:106256923-106257003 ( 50) GAGGAAGA 1 chr19:6598516-6598596 ( 69) GAGAGAGA 1 chr22:22809549-22809629 ( 5) GAGAGAGA 1 chr16:23859407-23859487 ( 22) GAAGAAGA 1 chr6:26332809-26332889 ( 40) GAAAGAGA 1 chr5:172214320-172214400 ( 60) GAAAGAGA 1 chr17:20772768-20772848 ( 19) GAAAGAGA 1 chr3:171678554-171678634 ( 59) GAAAGAGA 1 chr16:85750044-85750124 ( 20) GAGGGAGA 1 chr12:53749086-53749166 ( 40) GAGGGAGA 1 chr1:227505310-227505390 ( 27) GAAGAAGA 1 chr1:142863281-142863361 ( 18) AAGAAAGA 1 chr17:45401490-45401570 ( 62) GAAGGAGA 1 chr1:11796371-11796451 ( 61) GAAGGAGA 1 chr16:27561702-27561782 ( 65) GAAGGAGA 1 chr19:46061579-46061659 ( 11) AAAAAAGA 1 chr6:42059347-42059427 ( 1) AAAAAAGA 1 chr3:46671271-46671351 ( 11) AAGGAAGA 1 chr11:65267188-65267268 ( 70) AAAAAAGA 1 chr7:98871409-98871489 ( 55) AAGGAAGA 1 chr1:22111181-22111261 ( 7) AAGGAAGA 1 chr19:38826723-38826803 ( 65) AAGGAAGA 1 chr11:5256699-5256779 ( 52) GAGAAAAA 1 chr9:138333473-138333553 ( 57) AAAAGAGA 1 chr11:125463009-12546308 ( 28) GGGAAAGA 1 chr2:10170756-10170836 ( 68) GAGGGAAA 1 chr7:156743313-156743393 ( 58) GAAGAAAA 1 chr7:157318300-157318380 ( 57) GAGGGAAA 1 chr19:35522156-35522236 ( 20) GAGAAGGA 1 chr19:49978044-49978124 ( 54) GGGGGAGA 1 chrX:152599311-152599391 ( 10) GGGGGAGA 1 chr6:29596207-29596287 ( 21) GGGGGAGA 1 chr6:32222738-32222818 ( 67) GGAGAAGA 1 chr3:5165031-5165111 ( 32) GAAGGAAA 1 chr7:104873496-104873576 ( 35) GAAGGAAA 1 chr15:51895357-51895437 ( 63) AAGAGAAA 1 chr7:128114334-128114414 ( 14) AAAAAAAA 1 chr11:85777791-85777871 ( 1) AAAAAAAA 1 chr6:158247354-158247434 ( 21) AAAAAAAA 1 chr7:99062823-99062903 ( 61) AAAAAAAA 1 chr1:11864473-11864553 ( 34) AAAAAAAA 1 chr7:151202187-151202267 ( 70) AAAAAAAA 1 chr17:38270589-38270669 ( 63) AGAAAAGA 1 chr19:4831027-4831107 ( 16) AGGGAAGA 1 chr20:33872868-33872948 ( 41) GAAAGGGA 1 chr9:132446721-132446801 ( 23) AGAAAAGA 1 chr17:20772072-20772152 ( 52) GGGAAAAA 1 chr8:125823149-125823229 ( 2) AAAGAAAA 1 chr19:427563-427643 ( 41) GAAGGGGA 1 chr12:118499516-11849959 ( 72) GGGAGAAA 1 chr20:62496058-62496138 ( 67) AAAAAGGA 1 chr7:75268943-75269023 ( 63) AAAAAGGA 1 chr1:46269853-46269933 ( 6) GGGGAGGA 1 chr1:8586126-8586206 ( 67) AAAGGGGA 1 chr7:77561807-77561887 ( 59) GAGAAAGG 1 chr11:8008335-8008415 ( 70) AGGAGAAA 1 chr1:150981184-150981264 ( 10) AGGAAGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARRRAGA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.71923 E= 5.1e-004 11 -1310 142 -1310 169 -1310 -85 -1310 51 -1310 123 -1310 122 -1310 53 -1310 122 -1310 53 -1310 179 -1310 -155 -1310 -45 -1310 160 -1310 191 -1310 -455 -1310 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARRRAGA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 88 E= 5.1e-004 0.284091 0.000000 0.715909 0.000000 0.852273 0.000000 0.147727 0.000000 0.375000 0.000000 0.625000 0.000000 0.613636 0.000000 0.386364 0.000000 0.613636 0.000000 0.386364 0.000000 0.909091 0.000000 0.090909 0.000000 0.193182 0.000000 0.806818 0.000000 0.988636 0.000000 0.011364 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARRRAGA MEME-5 regular expression -------------------------------------------------------------------------------- [GA]A[GA][AG][AG]AGA -------------------------------------------------------------------------------- Time 19.80 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:36522656-36522736 1.11e-01 9_[+1(1.86e-05)]_14_[+1(1.86e-05)]_\ 14_[+1(1.86e-05)]_8_[+1(6.65e-05)]_3 chr6:28220544-28220624 6.53e-01 80 chr8:915521-915601 9.48e-01 80 chr1:205198291-205198371 1.16e-03 [+4(1.42e-05)]_[+4(1.42e-05)]_\ [+4(1.42e-05)]_[+4(1.42e-05)]_4_[+4(1.42e-05)]_36 chr12:54688860-54688940 4.53e-02 80 chr7:151202187-151202267 3.67e-01 80 chr1:11864473-11864553 3.39e-01 80 chr22:22809549-22809629 3.84e-01 4_[+5(9.79e-05)]_68 chr19:427563-427643 8.75e-01 80 chr10:80904847-80904927 5.76e-03 80 chr11:73499700-73499780 5.63e-01 80 chr6:31703477-31703557 1.25e-01 68_[+1(6.65e-05)]_4 chr16:81659908-81659988 3.31e-03 32_[+4(1.42e-05)]_40 chr12:49761704-49761784 5.24e-01 80 chr7:47514582-47514662 1.77e-01 33_[+3(1.58e-05)]_39 chr9:132446721-132446801 4.62e-02 1_[+3(1.58e-05)]_[+3(1.58e-05)]_24_\ [+3(1.58e-05)]_[+3(1.58e-05)]_[+3(1.58e-05)]_[+3(1.58e-05)]_7 chr6:47464955-47465035 1.00e-01 80 chr1:8937797-8937877 9.92e-01 80 chr18:9917354-9917434 2.37e-01 16_[+1(6.65e-05)]_56 chr2:178595199-178595279 7.02e-02 80 chr18:12478480-12478560 2.14e-03 28_[+4(1.42e-05)]_6_[+4(1.42e-05)]_\ 11_[+4(1.42e-05)]_11 chr7:106805830-106805910 7.20e-02 13_[+1(6.65e-05)]_59 chr7:104657853-104657933 6.82e-03 19_[+2(9.17e-05)]_53 chr14:20998983-20999063 2.17e-01 43_[+5(2.44e-05)]_20_[+5(9.79e-05)]_\ 1 chr19:44007913-44007993 3.10e-02 22_[+1(3.65e-05)]_50 chr3:135684264-135684344 9.73e-01 80 chr19:6602942-6603022 1.20e-01 80 chr2:131965625-131965705 1.38e-02 22_[+2(9.17e-05)]_14_[+1(9.53e-05)]_\ 28 chr7:75268943-75269023 1.52e-02 8_[+2(9.17e-05)]_64 chr11:66496412-66496492 8.16e-02 [+1(1.86e-05)]_72 chr7:99062823-99062903 8.16e-01 80 chr11:65275773-65275853 8.75e-02 36_[+3(1.58e-05)]_[+3(1.58e-05)]_\ [+3(1.58e-05)]_[+3(1.58e-05)]_[+3(1.58e-05)]_4 chr19:5681584-5681664 7.05e-01 80 chr18:67506256-67506336 6.85e-01 80 chr11:8008335-8008415 7.39e-02 11_[+1(9.53e-05)]_1_[+1(6.65e-05)]_\ 52 chr1:859133-859213 7.58e-01 80 chr19:6598516-6598596 2.35e-01 11_[+5(9.79e-05)]_17_[+5(9.79e-05)]_\ 22_[+5(9.79e-05)]_6 chr10:80874229-80874309 4.46e-03 5_[+4(1.42e-05)]_[+4(1.42e-05)]_2_\ [+4(1.42e-05)]_4_[+4(1.42e-05)]_[+4(1.42e-05)]_[+4(1.42e-05)]_\ [+4(1.42e-05)]_13 chr7:106256923-106257003 2.10e-01 4_[+5(9.79e-05)]_37_[+5(9.79e-05)]_\ 23 chr19:49644827-49644907 4.21e-03 2_[+4(1.42e-05)]_8_[+4(1.42e-05)]_6_\ [+4(1.42e-05)]_10_[+4(6.38e-05)]_2_[+4(1.42e-05)]_12 chr1:26455238-26455318 2.58e-03 10_[+3(1.58e-05)]_2_[+1(3.65e-05)]_\ [+1(3.65e-05)]_4_[+3(1.58e-05)]_[+3(1.58e-05)]_16_[+3(1.58e-05)] chr1:227505310-227505390 2.72e-01 80 chr6:31678726-31678806 3.56e-01 52_[+5(9.79e-05)]_20 chr7:77561807-77561887 4.80e-01 80 chr12:125348775-12534885 1.94e-01 37_[+1(6.65e-05)]_35 chr7:141437558-141437638 6.62e-02 80 chr15:85259886-85259966 1.77e-02 54_[+1(3.65e-05)]_4_[+1(3.65e-05)]_\ 6 chr17:38601419-38601499 7.28e-03 12_[+1(3.65e-05)]_38_[+1(1.86e-05)]_\ 14 chr11:8850555-8850635 5.25e-03 19_[+4(1.42e-05)]_11_[+4(1.42e-05)]_\ 1_[+4(1.42e-05)]_17_[+2(4.93e-05)] chr6:32222738-32222818 8.44e-02 22_[+4(8.29e-05)]_50 chr4:110071125-110071205 4.89e-03 31_[+4(1.42e-05)]_41 chr12:93708914-93708994 9.77e-01 80 chr19:35522156-35522236 3.95e-01 80 chr7:135619555-135619635 6.47e-02 80 chr12:53749086-53749166 2.86e-01 80 chr19:5690932-5691012 3.93e-01 80 chr1:24071035-24071115 1.62e-01 16_[+1(6.65e-05)]_56 chr17:58467238-58467318 9.95e-01 80 chr6:27099358-27099438 7.59e-01 80 chr20:33872868-33872948 2.34e-01 80 chr12:54692724-54692804 9.99e-01 80 chr20:31063286-31063366 2.95e-01 2_[+1(9.53e-05)]_70 chr7:150945668-150945748 1.10e-02 7_[+1(3.65e-05)]_2_[+1(1.86e-05)]_\ 55 chr14:69193177-69193257 1.49e-01 21_[+3(1.58e-05)]_[+3(1.58e-05)]_\ [+3(1.58e-05)]_8_[+3(1.58e-05)]_19 chr12:25100018-25100098 3.99e-03 50_[+1(9.53e-05)]_22 chr4:980563-980643 4.96e-01 80 chr16:56642355-56642435 7.96e-01 80 chr7:104873496-104873576 8.21e-01 80 chr7:156741934-156742014 4.12e-01 80 chr1:244513803-244513883 9.77e-01 80 chr17:76732548-76732628 6.05e-02 43_[+1(3.65e-05)]_29 chr6:158247354-158247434 2.20e-01 80 chr16:85750044-85750124 4.48e-01 80 chr6:27112058-27112138 9.40e-01 80 chr1:24104046-24104126 5.76e-01 80 chr19:48233112-48233192 3.01e-02 1_[+1(3.65e-05)]_54_[+1(3.65e-05)]_\ 9 chr19:3154593-3154673 4.31e-01 80 chr10:72972123-72972203 6.56e-01 80 chr4:38283467-38283547 3.82e-02 57_[+1(3.65e-05)]_15 chr1:150981184-150981264 4.30e-01 80 chr22:21483531-21483611 9.75e-01 80 chr1:8586126-8586206 9.76e-02 80 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chr22:17084119-17084199 3.73e-01 80 chr12:54781788-54781868 2.14e-03 43_[+4(1.42e-05)]_[+4(1.42e-05)]_\ [+4(1.42e-05)]_[+4(1.42e-05)]_5 chr4:6643113-6643193 3.00e-02 26_[+2(9.17e-05)]_46 chr1:11796371-11796451 1.61e-01 80 chr8:106330825-106330905 2.22e-02 41_[+1(3.65e-05)]_31 chr16:56716196-56716276 9.98e-01 80 chr6:27102525-27102605 4.30e-01 80 chr17:20772768-20772848 1.77e-01 80 chr10:25155794-25155874 1.70e-01 12_[+5(9.79e-05)]_12_[+5(2.44e-05)]_\ 28_[+5(2.44e-05)]_4 chr22:19110322-19110402 9.53e-01 80 chr7:98871409-98871489 6.11e-01 80 chr16:15669984-15670064 2.97e-01 80 chr1:47646575-47646655 1.15e-01 17_[+5(9.79e-05)]_55 chr4:2239165-2239245 2.27e-01 35_[+5(2.44e-05)]_37 chr22:23282947-23283027 4.46e-01 58_[+5(9.79e-05)]_14 chr1:36627461-36627541 1.12e-05 3_[+4(1.42e-05)]_6_[+4(1.42e-05)]_\ [+4(1.42e-05)]_[+4(1.42e-05)]_[+4(1.42e-05)]_1_[+5(9.79e-05)]_22 chr6:42712204-42712284 7.78e-02 1_[+3(1.58e-05)]_71 chr5:172214320-172214400 1.37e-02 14_[+3(1.58e-05)]_2_[+3(3.11e-05)]_\ 48 chr17:4812225-4812305 1.94e-01 19_[+3(1.58e-05)]_10_[+3(1.58e-05)]_\ [+3(1.58e-05)]_4_[+3(1.58e-05)]_[+3(1.58e-05)]_7 chr6:26332809-26332889 4.94e-02 80 chr11:65267188-65267268 4.16e-01 80 chr18:9915921-9916001 3.20e-02 56_[+2(9.17e-05)]_16 chr22:20187112-20187192 9.12e-01 80 chr9:123555239-123555319 9.30e-01 80 chr16:84766079-84766159 5.47e-01 80 chr11:48131752-48131832 7.71e-02 80 chr7:156743313-156743393 4.48e-01 80 chr17:57918517-57918597 9.19e-02 21_[+2(9.17e-05)]_4_[+2(9.17e-05)]_\ 39 chr6:2725806-2725886 5.73e-02 2_[+5(9.79e-05)]_2_[+5(2.44e-05)]_\ 60 chr8:130984887-130984967 1.90e-01 36_[+3(1.58e-05)]_3_[+3(3.11e-05)]_\ 25 chr1:20812515-20812595 8.90e-02 9_[+5(2.44e-05)]_63 chr16:88864679-88864759 8.90e-01 80 chr3:46671271-46671351 3.24e-01 80 chr17:45401490-45401570 2.89e-01 80 chr12:118499516-11849959 5.88e-01 80 chr7:35956878-35956958 3.06e-02 62_[+1(3.65e-05)]_10 chr10:5529098-5529178 2.39e-01 45_[+1(6.65e-05)]_27 chr16:81110375-81110455 1.07e-01 39_[+1(6.65e-05)]_33 chr3:195871093-195871173 7.77e-01 80 chr15:72523020-72523100 1.32e-01 32_[+5(9.79e-05)]_40 chr17:40374077-40374157 1.67e-03 7_[+4(1.42e-05)]_1_[+4(1.42e-05)]_3_\ [+4(1.42e-05)]_31_[+4(1.42e-05)]_6 chr17:38270589-38270669 7.23e-01 80 chr19:47552318-47552398 3.97e-02 2_[+1(6.65e-05)]_70 chr5:118773641-118773721 1.42e-01 20_[+5(2.44e-05)]_24_[+5(9.79e-05)]_\ 20 chr7:150758676-150758756 1.49e-02 9_[+1(6.65e-05)]_41_[+1(1.86e-05)]_\ 14 chr10:63662424-63662504 1.14e-03 8_[+4(1.42e-05)]_[+4(1.42e-05)]_\ [+4(1.42e-05)]_6_[+4(1.42e-05)]_[+2(4.93e-05)]_26 chr10:88514739-88514819 8.43e-02 56_[+5(2.44e-05)]_16 chr1:231176311-231176391 5.15e-01 80 chr17:20772072-20772152 4.43e-01 80 chr1:229695161-229695241 2.62e-01 26_[+1(6.65e-05)]_46 chr2:97001049-97001129 5.72e-01 80 chr19:49978044-49978124 4.08e-01 80 chr17:47068408-47068488 4.21e-01 51_[+5(9.79e-05)]_21 chr10:72300020-72300100 1.67e-04 3_[+4(3.07e-05)]_10_[+4(1.42e-05)]_\ 51 chr1:220445318-220445398 7.77e-02 54_[+5(9.79e-05)]_18 chr7:150779881-150779961 4.33e-01 80 chr15:96874096-96874176 8.78e-02 1_[+1(9.53e-05)]_34_[+1(3.65e-05)]_\ 29 chr19:38808173-38808253 1.73e-02 26_[+2(9.17e-05)]_18_[+2(4.93e-05)]_\ 20 chr18:1465239-1465319 3.95e-01 80 chr6:31940898-31940978 9.34e-01 80 chr8:124169892-124169972 1.29e-01 46_[+3(1.58e-05)]_14_[+3(1.58e-05)]_\ 4 chr1:171710767-171710847 1.26e-01 60_[+1(1.86e-05)]_12 chr19:41120089-41120169 3.56e-01 80 chr22:22240925-22241005 2.67e-02 80 chr6:42059347-42059427 7.31e-03 80 chr2:10170756-10170836 2.79e-03 80 chr20:34622991-34623071 1.96e-01 3_[+3(3.11e-05)]_8_[+3(3.11e-05)]_\ 32_[+3(1.58e-05)]_5_[+3(3.11e-05)] chr4:24585341-24585421 3.13e-01 80 chr22:18400270-18400350 3.69e-01 80 chr7:138792436-138792516 9.31e-01 80 chr6:37392110-37392190 1.08e-01 80 chr22:19804145-19804225 2.50e-01 27_[+3(3.11e-05)]_18_[+3(3.11e-05)]_\ 5_[+3(3.11e-05)]_6 chr20:49085175-49085255 5.26e-03 10_[+1(1.86e-05)]_62 chr6:2846428-2846508 2.01e-01 80 chr4:140085199-140085279 9.09e-03 8_[+5(2.44e-05)]_1_[+4(8.29e-05)]_3_\ [+5(2.44e-05)]_20_[+5(2.44e-05)]_16 chr7:150676025-150676105 2.23e-03 [+3(1.58e-05)]_[+3(1.58e-05)]_\ [+3(1.58e-05)]_6_[+3(1.58e-05)]_7_[+5(9.79e-05)]_27 chr19:48216987-48217067 7.53e-02 7_[+1(1.86e-05)]_65 chr10:75385343-75385423 3.85e-01 80 chr10:74452911-74452991 1.07e-04 21_[+4(1.42e-05)]_[+4(1.42e-05)]_\ [+4(1.42e-05)]_1_[+5(9.79e-05)]_14_[+5(9.79e-05)]_4 chr22:18359608-18359688 1.00e+00 80 chr12:125360913-12536099 1.93e-01 39_[+3(1.58e-05)]_4_[+3(1.58e-05)]_\ 4_[+3(1.58e-05)]_9 chr10:50374696-50374776 4.67e-02 15_[+5(9.79e-05)]_39_[+5(9.79e-05)]_\ 10 chr16:87812003-87812083 4.08e-02 24_[+1(3.65e-05)]_48 chr9:139525898-139525978 1.60e-01 4_[+3(1.58e-05)]_36_[+3(1.58e-05)]_\ 24 chr19:55782105-55782185 2.57e-01 56_[+3(3.11e-05)]_16 chr16:23859407-23859487 9.62e-02 80 chr19:46061579-46061659 2.38e-01 80 chr20:60962456-60962536 2.02e-01 80 chr1:1311156-1311236 8.96e-01 80 chr16:31008343-31008423 1.35e-01 43_[+4(8.29e-05)]_29 chr6:28726872-28726952 5.98e-02 14_[+4(9.92e-05)]_58 chr10:72576827-72576907 3.10e-01 31_[+1(6.65e-05)]_41 chr18:8915064-8915144 1.74e-01 35_[+5(2.44e-05)]_16_[+5(2.44e-05)]_\ 2_[+5(9.79e-05)]_3 chr6:27775433-27775513 6.98e-01 80 chr19:45086042-45086122 4.42e-01 10_[+5(9.79e-05)]_34_[+5(9.79e-05)]_\ 20 chr19:3244337-3244417 4.67e-03 6_[+4(1.42e-05)]_8_[+4(6.38e-05)]_\ 17_[+4(1.42e-05)]_25 chr1:22117706-22117786 6.71e-01 80 chr1:856608-856688 1.00e+00 80 chr17:38514672-38514752 1.74e-01 23_[+5(2.44e-05)]_49 chr16:70380324-70380404 9.41e-01 80 chrX:48646625-48646705 2.38e-01 26_[+5(9.79e-05)]_46 chr19:7559876-7559956 2.52e-01 10_[+1(6.65e-05)]_28_[+1(6.65e-05)]_\ 26 chr15:51895357-51895437 2.27e-01 80 chr6:13709044-13709124 9.32e-03 8_[+3(1.58e-05)]_[+3(1.58e-05)]_\ [+3(1.58e-05)]_22_[+5(9.79e-05)]_18 chr22:17085601-17085681 2.92e-01 80 chr22:20008117-20008197 3.49e-01 64_[+5(9.79e-05)]_8 chr1:207097573-207097653 5.33e-03 [+4(9.92e-05)]_19_[+4(1.42e-05)]_12_\ [+4(1.42e-05)]_1_[+4(6.38e-05)]_8_[+4(1.42e-05)] chr17:66508203-66508283 2.40e-01 19_[+5(9.79e-05)]_53 chr17:41276692-41276772 1.79e-02 68_[+2(9.17e-05)]_4 chr22:21969272-21969352 3.64e-02 27_[+4(4.72e-05)]_45 chr11:5256699-5256779 3.76e-01 80 chr1:46269853-46269933 2.85e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n04.farnam.hpc.yale.internal ********************************************************************************