******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/KLF16.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr19:40951982-40952062 1.0000 80 chr11:111797927-11179800 1.0000 80 chr15:67253805-67253885 1.0000 80 chr21:40580956-40581036 1.0000 80 chr1:182838533-182838613 1.0000 80 chr9:139481749-139481829 1.0000 80 chr7:129781480-129781560 1.0000 80 chr4:78079411-78079491 1.0000 80 chr17:7589386-7589466 1.0000 80 chr5:90677675-90677755 1.0000 80 chr10:75126746-75126826 1.0000 80 chr8:125539555-125539635 1.0000 80 chr19:45793869-45793949 1.0000 80 chr20:62152451-62152531 1.0000 80 chr6:44443621-44443701 1.0000 80 chr22:31394464-31394544 1.0000 80 chr7:1067999-1068079 1.0000 80 chr2:10588486-10588566 1.0000 80 chr6:64282193-64282273 1.0000 80 chrX:48568088-48568168 1.0000 80 chr14:106069833-10606991 1.0000 80 chr7:24852060-24852140 1.0000 80 chr2:122614108-122614188 1.0000 80 chr1:16212837-16212917 1.0000 80 chr2:96890971-96891051 1.0000 80 chr3:184080672-184080752 1.0000 80 chr1:11741562-11741642 1.0000 80 chr10:73487655-73487735 1.0000 80 chr1:208041664-208041744 1.0000 80 chr9:116303533-116303613 1.0000 80 chr1:37945337-37945417 1.0000 80 chr16:19019739-19019819 1.0000 80 chr1:90367899-90367979 1.0000 80 chr12:118558725-11855880 1.0000 80 chr7:100728550-100728630 1.0000 80 chr10:13341537-13341617 1.0000 80 chr20:37489207-37489287 1.0000 80 chr9:130805785-130805865 1.0000 80 chr20:5591611-5591691 1.0000 80 chr19:46524828-46524908 1.0000 80 chr5:78389681-78389761 1.0000 80 chr2:175468121-175468201 1.0000 80 chr17:8042309-8042389 1.0000 80 chr2:61765387-61765467 1.0000 80 chr14:106069324-10606940 1.0000 80 chr9:135670275-135670355 1.0000 80 chr19:49661006-49661086 1.0000 80 chr2:74531658-74531738 1.0000 80 chr4:696618-696698 1.0000 80 chr17:31187280-31187360 1.0000 80 chr1:169278521-169278601 1.0000 80 chr16:55469411-55469491 1.0000 80 chr17:42467234-42467314 1.0000 80 chr6:133133606-133133686 1.0000 80 chr12:113860165-11386024 1.0000 80 chr22:20766996-20767076 1.0000 80 chr19:12476275-12476355 1.0000 80 chr19:18385854-18385934 1.0000 80 chr5:42583571-42583651 1.0000 80 chrX:54834915-54834995 1.0000 80 chr5:90675932-90676012 1.0000 80 chr20:49407351-49407431 1.0000 80 chr10:103578199-10357827 1.0000 80 chr12:28343777-28343857 1.0000 80 chr13:99628371-99628451 1.0000 80 chr7:132174731-132174811 1.0000 80 chr17:40464463-40464543 1.0000 80 chr17:27945083-27945163 1.0000 80 chr10:61469564-61469644 1.0000 80 chr7:104583989-104584069 1.0000 80 chr7:86562699-86562779 1.0000 80 chr6:15622057-15622137 1.0000 80 chr5:158821164-158821244 1.0000 80 chr17:46103980-46104060 1.0000 80 chr3:123361337-123361417 1.0000 80 chr12:124068903-12406898 1.0000 80 chr19:14225027-14225107 1.0000 80 chr17:28580558-28580638 1.0000 80 chr1:151512293-151512373 1.0000 80 chrX:153607533-153607613 1.0000 80 chrX:39874282-39874362 1.0000 80 chr10:86014653-86014733 1.0000 80 chr11:60621833-60621913 1.0000 80 chr17:27054416-27054496 1.0000 80 chr9:129719827-129719907 1.0000 80 chrX:107801622-107801702 1.0000 80 chr16:23690017-23690097 1.0000 80 chr1:161736041-161736121 1.0000 80 chr11:34258312-34258392 1.0000 80 chr22:50098339-50098419 1.0000 80 chr19:11877997-11878077 1.0000 80 chr15:81194802-81194882 1.0000 80 chr5:36242374-36242454 1.0000 80 chr6:28521856-28521936 1.0000 80 chr2:158731518-158731598 1.0000 80 chr5:73629976-73630056 1.0000 80 chr12:14410633-14410713 1.0000 80 chr1:68577603-68577683 1.0000 80 chr1:206274326-206274406 1.0000 80 chr7:73779866-73779946 1.0000 80 chr12:125369563-12536964 1.0000 80 chrX:152952282-152952362 1.0000 80 chrX:55054610-55054690 1.0000 80 chr12:4671364-4671444 1.0000 80 chr21:40357691-40357771 1.0000 80 chr22:22146151-22146231 1.0000 80 chr1:212810206-212810286 1.0000 80 chr6:27805244-27805324 1.0000 80 chr1:26087562-26087642 1.0000 80 chr14:71353498-71353578 1.0000 80 chr20:42639095-42639175 1.0000 80 chr10:105378635-10537871 1.0000 80 chr11:65264988-65265068 1.0000 80 chr2:178504424-178504504 1.0000 80 chr10:80787322-80787402 1.0000 80 chr15:69407136-69407216 1.0000 80 chr1:12043677-12043757 1.0000 80 chr14:69229878-69229958 1.0000 80 chr17:41481347-41481427 1.0000 80 chr6:47210292-47210372 1.0000 80 chr5:149879195-149879275 1.0000 80 chr12:65114779-65114859 1.0000 80 chr1:31981148-31981228 1.0000 80 chr1:22076496-22076576 1.0000 80 chr11:44341390-44341470 1.0000 80 chr2:113342099-113342179 1.0000 80 chr10:65389917-65389997 1.0000 80 chr1:234694339-234694419 1.0000 80 chr10:52086751-52086831 1.0000 80 chr1:90287445-90287525 1.0000 80 chr18:3603149-3603229 1.0000 80 chr8:102049381-102049461 1.0000 80 chr11:62649147-62649227 1.0000 80 chr20:39890786-39890866 1.0000 80 chrX:119468579-119468659 1.0000 80 chr17:31298372-31298452 1.0000 80 chr16:71464773-71464853 1.0000 80 chr3:101249326-101249406 1.0000 80 chr5:111885584-111885664 1.0000 80 chr1:16359480-16359560 1.0000 80 chr13:39573087-39573167 1.0000 80 chr1:204196593-204196673 1.0000 80 chr7:135718345-135718425 1.0000 80 chr17:33212263-33212343 1.0000 80 chr7:104654040-104654120 1.0000 80 chr9:132976847-132976927 1.0000 80 chr7:102082203-102082283 1.0000 80 chr12:48171639-48171719 1.0000 80 chr7:765372-765452 1.0000 80 chr12:8845364-8845444 1.0000 80 chr1:162342707-162342787 1.0000 80 chr17:33214008-33214088 1.0000 80 chr11:58541875-58541955 1.0000 80 chr16:88866474-88866554 1.0000 80 chr18:46355336-46355416 1.0000 80 chr21:39848475-39848555 1.0000 80 chr1:230341582-230341662 1.0000 80 chr16:30786796-30786876 1.0000 80 chr17:40903147-40903227 1.0000 80 chr19:39373568-39373648 1.0000 80 chr17:72329104-72329184 1.0000 80 chr22:41999965-42000045 1.0000 80 chr10:71217781-71217861 1.0000 80 chr10:12105584-12105664 1.0000 80 chr5:90236505-90236585 1.0000 80 chr5:10505818-10505898 1.0000 80 chr6:4985115-4985195 1.0000 80 chr8:141629153-141629233 1.0000 80 chr19:13694073-13694153 1.0000 80 chr3:193973982-193974062 1.0000 80 chr19:19600140-19600220 1.0000 80 chr20:3890843-3890923 1.0000 80 chr1:87645980-87646060 1.0000 80 chr11:67367914-67367994 1.0000 80 chr1:206266192-206266272 1.0000 80 chr7:66005025-66005105 1.0000 80 chr12:109249782-10924986 1.0000 80 chr15:88214705-88214785 1.0000 80 chrX:47676972-47677052 1.0000 80 chr2:239331068-239331148 1.0000 80 chr5:177844512-177844592 1.0000 80 chr22:40586644-40586724 1.0000 80 chr17:27239536-27239616 1.0000 80 chr19:39310031-39310111 1.0000 80 chr14:61456483-61456563 1.0000 80 chr9:37197252-37197332 1.0000 80 chr12:57915891-57915971 1.0000 80 chr2:145263174-145263254 1.0000 80 chr19:45458224-45458304 1.0000 80 chr1:16380765-16380845 1.0000 80 chr5:55606800-55606880 1.0000 80 chr1:151138477-151138557 1.0000 80 chr1:101749213-101749293 1.0000 80 chr17:27068639-27068719 1.0000 80 chr6:34530769-34530849 1.0000 80 chr19:17622842-17622922 1.0000 80 chr11:67116014-67116094 1.0000 80 chr3:156178167-156178247 1.0000 80 chr3:13692193-13692273 1.0000 80 chr7:44120935-44121015 1.0000 80 chr12:51762646-51762726 1.0000 80 chr15:64731393-64731473 1.0000 80 chr11:57415832-57415912 1.0000 80 chr6:20575569-20575649 1.0000 80 chr1:120279970-120280050 1.0000 80 chr9:33240041-33240121 1.0000 80 chr10:126738258-12673833 1.0000 80 chr2:68220631-68220711 1.0000 80 chr19:14474536-14474616 1.0000 80 chr4:40292557-40292637 1.0000 80 chr5:139017467-139017547 1.0000 80 chr1:202045343-202045423 1.0000 80 chr3:182655582-182655662 1.0000 80 chr1:207020994-207021074 1.0000 80 chr17:73781181-73781261 1.0000 80 chr5:133268496-133268576 1.0000 80 chr19:1836910-1836990 1.0000 80 chr10:127293936-12729401 1.0000 80 chr5:168240770-168240850 1.0000 80 chr1:201123016-201123096 1.0000 80 chr20:32007091-32007171 1.0000 80 chr17:72711379-72711459 1.0000 80 chr13:38533672-38533752 1.0000 80 chr12:7394879-7394959 1.0000 80 chr4:79542721-79542801 1.0000 80 chr10:29096390-29096470 1.0000 80 chr14:23630329-23630409 1.0000 80 chr7:150010546-150010626 1.0000 80 chrX:55041566-55041646 1.0000 80 chr2:20624664-20624744 1.0000 80 chr10:14223359-14223439 1.0000 80 chr3:13049158-13049238 1.0000 80 chr4:140099220-140099300 1.0000 80 chr1:213779235-213779315 1.0000 80 chr15:90777241-90777321 1.0000 80 chr2:127431756-127431836 1.0000 80 chr16:25783237-25783317 1.0000 80 chr1:156928257-156928337 1.0000 80 chr11:8228055-8228135 1.0000 80 chr1:3691534-3691614 1.0000 80 chr1:118156050-118156130 1.0000 80 chr9:135860341-135860421 1.0000 80 chr19:38643788-38643868 1.0000 80 chr1:15110668-15110748 1.0000 80 chr1:162356272-162356352 1.0000 80 chr15:62386779-62386859 1.0000 80 chr16:58299517-58299597 1.0000 80 chr9:100987554-100987634 1.0000 80 chr1:20525617-20525697 1.0000 80 chr15:101647956-10164803 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_KLF16/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/KLF16.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.224 C 0.279 G 0.274 T 0.223 Background letter frequencies (from file dataset with add-one prior applied): A 0.224 C 0.279 G 0.274 T 0.223 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF VAGATAAG MEME-1 width = 8 sites = 58 llr = 492 E-value = 1.7e-031 ******************************************************************************** -------------------------------------------------------------------------------- Motif VAGATAAG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 27:a:aa2 pos.-specific C 4::::::1 probability G 3:a::::6 matrix T 13::a::1 bits 2.2 **** 2.0 ***** 1.7 ***** 1.5 ***** Relative 1.3 ****** Entropy 1.1 ****** (12.2 bits) 0.9 ****** 0.7 ****** 0.4 ****** 0.2 ******** 0.0 -------- Multilevel CAGATAAG consensus GT A sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VAGATAAG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr10:14223359-14223439 50 1.18e-05 TCTGGGAGCC CAGATAAG GAGAAAGCTG chr6:34530769-34530849 68 1.18e-05 ACCGCAGGCC CAGATAAG AGCAC chrX:47676972-47677052 39 1.18e-05 CAGTTAGGGC CAGATAAG CCTAACTGCA chr1:162342707-162342787 46 1.18e-05 TGCTAAGCCA CAGATAAG ACTCTGGAGG chr20:42639095-42639175 52 1.18e-05 CTGGGAAAAC CAGATAAG GAGATGTACA chr15:81194802-81194882 68 1.18e-05 GGCAGCAGGA CAGATAAG GTGGC chr22:50098339-50098419 59 1.18e-05 TACTGGAGGC CAGATAAG GGTTTGCGGG chr1:201123016-201123096 20 2.12e-05 ACAGCCACCA AAGATAAG AGCTTCATGC chr19:1836910-1836990 50 2.12e-05 CTGGACAAAA AAGATAAG CCTGACACTG chr1:202045343-202045423 32 2.12e-05 GGCTGGGCTG AAGATAAG AGGCAGCTGT chr9:33240041-33240121 71 2.12e-05 GGCCCTAGAT AAGATAAG AT chr1:120279970-120280050 32 2.12e-05 CTGGGAGCTG AAGATAAG GGAAATCTGC chr7:66005025-66005105 26 2.12e-05 cctgcctgtg aagataag ctgtgaattt chr7:135718345-135718425 63 2.12e-05 GTGTTCTTTC AAGATAAG ACAGCTGCTC chr5:149879195-149879275 64 2.12e-05 ATCCTCCCCC AAGATAAG CTCTGCCTG chr11:60621833-60621913 4 2.12e-05 AAT AAGATAAG AGCCAGGAGA chr2:122614108-122614188 47 2.12e-05 ataccagaag aagataag acctgcctgg chr10:29096390-29096470 69 3.28e-05 TGGCAGGCTT GAGATAAG CCTG chr10:126738258-12673833 3 3.28e-05 CA GAGATAAG CTATCAAAGC chr8:102049381-102049461 18 3.28e-05 accacACTGA GAGATAAG TGAGAGGGAG chr16:55469411-55469491 66 3.28e-05 CTGCCTACAG GAGATAAG AGGCTGG chr21:40580956-40581036 13 3.28e-05 ctctgcttat gagataag aagaactggc chr19:38643788-38643868 49 5.41e-05 TCTGCTCCCG CTGATAAG GCCAGAGCCG chr11:8228055-8228135 7 5.41e-05 CCCCAG CTGATAAG GGCCCGCATT chr2:127431756-127431836 5 5.41e-05 GCCT CTGATAAG CCTCCGAGCG chr1:207020994-207021074 44 5.41e-05 acttgtcacc ctgataag aatgacacag chr17:27068639-27068719 59 5.41e-05 CTTTAGCCCC CAGATAAA AAAAGCAGAA chrX:119468579-119468659 17 5.41e-05 tctgctccta ctgataag gtcccctagc chr18:3603149-3603229 37 5.41e-05 GTCAGGTCAC CAGATAAA GGCAAGTCTT chrX:55054610-55054690 22 5.41e-05 CTGCAGACCA CAGATAAA GTTGCCAGAG chrX:107801622-107801702 30 5.41e-05 TGTAAAGGTG CTGATAAG ATATGATGGG chr1:213779235-213779315 46 7.12e-05 agtgcaaacc atgataag aaaagcccaa chr17:72329104-72329184 57 7.12e-05 GCTGTTGGGA AAGATAAA TAAAGTATAA chr22:22146151-22146231 71 7.12e-05 aatggggcaa aagataaa aa chr5:73629976-73630056 61 7.12e-05 ACAGGAAGAA ATGATAAG GGGGTTCCAG chr5:168240770-168240850 52 9.21e-05 CAGGCTGAGC GAGATAAA GCTCTTTCCT chr6:20575569-20575649 68 9.21e-05 TCTTGTCAGT GTGATAAG GGATA chr2:239331068-239331148 44 9.21e-05 GTCAGGTGAG GAGATAAA TGCTGCTGGG chr3:193973982-193974062 62 1.02e-04 CAGGCCCTAG CAGATAAT AAAGCTTATC chr10:80787322-80787402 40 1.02e-04 GCCCAGGCAG CAGATAAT TGATTAATAG chr12:7394879-7394959 12 1.11e-04 gctgcaaaca tagataag gaagctggaa chr10:12105584-12105664 50 1.11e-04 ctgtggtgcc tagataag gtttctggaa chr1:3691534-3691614 45 1.28e-04 TGCAGGCTCC CTGATAAA AGCACCGGGG chr5:10505818-10505898 29 1.28e-04 TTGGTTATGT CTGATAAA AAAAAAAAAA chr16:58299517-58299597 70 1.50e-04 tggaagctgt gagataat aaa chr1:26087562-26087642 51 1.50e-04 ctgttacact gagataat cccttgtcgg chr7:86562699-86562779 29 1.76e-04 caggatgcct gtgataaa aagttccctt chr2:96890971-96891051 9 1.76e-04 cagatgga gtgataaa taaaggcaga chrX:55041566-55041646 40 1.98e-04 GCAGTCGTAG CTGATAAT TCTGCTGCTT chr7:44120935-44121015 17 1.98e-04 ctgtaaagca gagataac atatccaccc chr12:48171639-48171719 22 1.98e-04 tccattgcca gagataac cactttcccc chr17:31187280-31187360 13 1.98e-04 cttgttgtgt gagataac atgtttcttt chr1:206266192-206266272 8 2.15e-04 cgtgcta tagataaa catgaatgct chr22:40586644-40586724 43 2.44e-04 CTGCCCTGGT GTGATAAT GCTATCAGCT chr21:39848475-39848555 47 2.44e-04 GTGTTCAGCC CTGATAAC CCATCTGGGC chr12:125369563-12536964 52 2.44e-04 ctgggtgggc ctgataac tgcattttca chr1:206274326-206274406 36 2.44e-04 ccgtcctgtc ctgataac tgaccaccaa chr15:62386779-62386859 65 2.61e-04 AACAGTTGAT TAGATAAT GTTGTGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VAGATAAG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:14223359-14223439 1.2e-05 49_[+1]_23 chr6:34530769-34530849 1.2e-05 67_[+1]_5 chrX:47676972-47677052 1.2e-05 38_[+1]_34 chr1:162342707-162342787 1.2e-05 45_[+1]_27 chr20:42639095-42639175 1.2e-05 51_[+1]_21 chr15:81194802-81194882 1.2e-05 67_[+1]_5 chr22:50098339-50098419 1.2e-05 58_[+1]_14 chr1:201123016-201123096 2.1e-05 19_[+1]_53 chr19:1836910-1836990 2.1e-05 49_[+1]_23 chr1:202045343-202045423 2.1e-05 31_[+1]_41 chr9:33240041-33240121 2.1e-05 70_[+1]_2 chr1:120279970-120280050 2.1e-05 31_[+1]_41 chr7:66005025-66005105 2.1e-05 25_[+1]_47 chr7:135718345-135718425 2.1e-05 62_[+1]_10 chr5:149879195-149879275 2.1e-05 63_[+1]_9 chr11:60621833-60621913 2.1e-05 3_[+1]_69 chr2:122614108-122614188 2.1e-05 46_[+1]_26 chr10:29096390-29096470 3.3e-05 68_[+1]_4 chr10:126738258-12673833 3.3e-05 2_[+1]_70 chr8:102049381-102049461 3.3e-05 17_[+1]_55 chr16:55469411-55469491 3.3e-05 65_[+1]_7 chr21:40580956-40581036 3.3e-05 12_[+1]_60 chr19:38643788-38643868 5.4e-05 48_[+1]_24 chr11:8228055-8228135 5.4e-05 6_[+1]_66 chr2:127431756-127431836 5.4e-05 4_[+1]_68 chr1:207020994-207021074 5.4e-05 43_[+1]_29 chr17:27068639-27068719 5.4e-05 58_[+1]_14 chrX:119468579-119468659 5.4e-05 16_[+1]_56 chr18:3603149-3603229 5.4e-05 36_[+1]_36 chrX:55054610-55054690 5.4e-05 21_[+1]_51 chrX:107801622-107801702 5.4e-05 29_[+1]_43 chr1:213779235-213779315 7.1e-05 45_[+1]_27 chr17:72329104-72329184 7.1e-05 56_[+1]_16 chr22:22146151-22146231 7.1e-05 70_[+1]_2 chr5:73629976-73630056 7.1e-05 60_[+1]_12 chr5:168240770-168240850 9.2e-05 51_[+1]_21 chr6:20575569-20575649 9.2e-05 67_[+1]_5 chr2:239331068-239331148 9.2e-05 43_[+1]_29 chr3:193973982-193974062 0.0001 61_[+1]_11 chr10:80787322-80787402 0.0001 39_[+1]_33 chr12:7394879-7394959 0.00011 11_[+1]_61 chr10:12105584-12105664 0.00011 49_[+1]_23 chr1:3691534-3691614 0.00013 44_[+1]_28 chr5:10505818-10505898 0.00013 28_[+1]_44 chr16:58299517-58299597 0.00015 69_[+1]_3 chr1:26087562-26087642 0.00015 50_[+1]_22 chr7:86562699-86562779 0.00018 28_[+1]_44 chr2:96890971-96891051 0.00018 8_[+1]_64 chrX:55041566-55041646 0.0002 39_[+1]_33 chr7:44120935-44121015 0.0002 16_[+1]_56 chr12:48171639-48171719 0.0002 21_[+1]_51 chr17:31187280-31187360 0.0002 12_[+1]_60 chr1:206266192-206266272 0.00021 7_[+1]_65 chr22:40586644-40586724 0.00024 42_[+1]_30 chr21:39848475-39848555 0.00024 46_[+1]_26 chr12:125369563-12536964 0.00024 51_[+1]_21 chr1:206274326-206274406 0.00024 35_[+1]_37 chr15:62386779-62386859 0.00026 64_[+1]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VAGATAAG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF VAGATAAG width=8 seqs=58 chr10:14223359-14223439 ( 50) CAGATAAG 1 chr6:34530769-34530849 ( 68) CAGATAAG 1 chrX:47676972-47677052 ( 39) CAGATAAG 1 chr1:162342707-162342787 ( 46) CAGATAAG 1 chr20:42639095-42639175 ( 52) CAGATAAG 1 chr15:81194802-81194882 ( 68) CAGATAAG 1 chr22:50098339-50098419 ( 59) CAGATAAG 1 chr1:201123016-201123096 ( 20) AAGATAAG 1 chr19:1836910-1836990 ( 50) AAGATAAG 1 chr1:202045343-202045423 ( 32) AAGATAAG 1 chr9:33240041-33240121 ( 71) AAGATAAG 1 chr1:120279970-120280050 ( 32) AAGATAAG 1 chr7:66005025-66005105 ( 26) AAGATAAG 1 chr7:135718345-135718425 ( 63) AAGATAAG 1 chr5:149879195-149879275 ( 64) AAGATAAG 1 chr11:60621833-60621913 ( 4) AAGATAAG 1 chr2:122614108-122614188 ( 47) AAGATAAG 1 chr10:29096390-29096470 ( 69) GAGATAAG 1 chr10:126738258-12673833 ( 3) GAGATAAG 1 chr8:102049381-102049461 ( 18) GAGATAAG 1 chr16:55469411-55469491 ( 66) GAGATAAG 1 chr21:40580956-40581036 ( 13) GAGATAAG 1 chr19:38643788-38643868 ( 49) CTGATAAG 1 chr11:8228055-8228135 ( 7) CTGATAAG 1 chr2:127431756-127431836 ( 5) CTGATAAG 1 chr1:207020994-207021074 ( 44) CTGATAAG 1 chr17:27068639-27068719 ( 59) CAGATAAA 1 chrX:119468579-119468659 ( 17) CTGATAAG 1 chr18:3603149-3603229 ( 37) CAGATAAA 1 chrX:55054610-55054690 ( 22) CAGATAAA 1 chrX:107801622-107801702 ( 30) CTGATAAG 1 chr1:213779235-213779315 ( 46) ATGATAAG 1 chr17:72329104-72329184 ( 57) AAGATAAA 1 chr22:22146151-22146231 ( 71) AAGATAAA 1 chr5:73629976-73630056 ( 61) ATGATAAG 1 chr5:168240770-168240850 ( 52) GAGATAAA 1 chr6:20575569-20575649 ( 68) GTGATAAG 1 chr2:239331068-239331148 ( 44) GAGATAAA 1 chr3:193973982-193974062 ( 62) CAGATAAT 1 chr10:80787322-80787402 ( 40) CAGATAAT 1 chr12:7394879-7394959 ( 12) TAGATAAG 1 chr10:12105584-12105664 ( 50) TAGATAAG 1 chr1:3691534-3691614 ( 45) CTGATAAA 1 chr5:10505818-10505898 ( 29) CTGATAAA 1 chr16:58299517-58299597 ( 70) GAGATAAT 1 chr1:26087562-26087642 ( 51) GAGATAAT 1 chr7:86562699-86562779 ( 29) GTGATAAA 1 chr2:96890971-96891051 ( 9) GTGATAAA 1 chrX:55041566-55041646 ( 40) CTGATAAT 1 chr7:44120935-44121015 ( 17) GAGATAAC 1 chr12:48171639-48171719 ( 22) GAGATAAC 1 chr17:31187280-31187360 ( 13) GAGATAAC 1 chr1:206266192-206266272 ( 8) TAGATAAA 1 chr22:40586644-40586724 ( 43) GTGATAAT 1 chr21:39848475-39848555 ( 47) CTGATAAC 1 chr12:125369563-12536964 ( 52) CTGATAAC 1 chr1:206274326-206274406 ( 36) CTGATAAC 1 chr15:62386779-62386859 ( 65) TAGATAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VAGATAAG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.98426 E= 1.7e-031 11 57 1 -169 162 -1250 -1250 48 -1250 -1250 187 -1250 216 -1250 -1250 -1250 -1250 -1250 -1250 217 216 -1250 -1250 -1250 216 -1250 -1250 -1250 -12 -143 105 -88 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VAGATAAG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 58 E= 1.7e-031 0.241379 0.413793 0.275862 0.068966 0.689655 0.000000 0.000000 0.310345 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.206897 0.103448 0.568966 0.120690 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VAGATAAG MEME-1 regular expression -------------------------------------------------------------------------------- [CGA][AT]GATAA[GA] -------------------------------------------------------------------------------- Time 5.03 secs. ******************************************************************************** ******************************************************************************** MOTIF AKCTGGHT MEME-2 width = 8 sites = 217 llr = 1139 E-value = 3.4e-022 ******************************************************************************** -------------------------------------------------------------------------------- Motif AKCTGGHT MEME-2 Description -------------------------------------------------------------------------------- Simplified A 72:2::21 pos.-specific C ::a1:342 probability G 25::a7:2 matrix T 13:7::45 bits 2.2 2.0 * * 1.7 * * 1.5 * * Relative 1.3 * * Entropy 1.1 * * (7.6 bits) 0.9 * **** 0.7 * **** 0.4 ******* 0.2 ******** 0.0 -------- Multilevel AGCTGGCT consensus GT A CTC sequence A A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AKCTGGHT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr22:40586644-40586724 57 1.43e-05 TAATGCTATC AGCTGGTT GTGGGAGTGG chr1:31981148-31981228 17 1.43e-05 GGCCAGTTTG AGCTGGTT TTATCTGGTT chr9:129719827-129719907 38 1.43e-05 CATCCATACC AGCTGGTT TGTTCTGGCT chr20:49407351-49407431 29 1.43e-05 CCATCCCTGC AGCTGGTT CAAACTGGTT chr12:113860165-11386024 49 1.43e-05 TCCTGGAAAG AGCTGGTT CCCTGGCAGG chr6:133133606-133133686 40 1.43e-05 ACCAAGTCTG AGCTGGTT GGTACTGGGA chr9:130805785-130805865 42 1.43e-05 CACTGGTGGT AGCTGGTT AGAACCTGAA chr6:47210292-47210372 47 3.21e-05 GGTAAGAACC AGCTGGCT CCGGAGGGAG chr19:18385854-18385934 16 3.21e-05 GACTCAGTGC AGCTGGCT CCAGCCAAAG chr16:19019739-19019819 27 3.21e-05 AGGGCGGTCA AGCtggct gaagactggt chr15:101647956-10164803 61 4.37e-05 atgtaaccat atctggtt gatatagtct chr1:37945337-37945417 14 4.37e-05 ATCCGGAACA ATCTGGTT TCTCCTCGGT chr7:129781480-129781560 34 4.37e-05 AACCGGAATG ATCTGGTT TGGAGCGGGT chr2:178504424-178504504 26 7.25e-05 ATCTGTTATC ATCTGGCT CAGTTTGTGC chrX:152952282-152952362 31 7.25e-05 AGCAAGCTCA ATCTGGCT TGGGCCGGAA chr12:14410633-14410713 54 7.25e-05 CCAGTTTCTG AGCTGGAT TGAGAACAAC chr5:36242374-36242454 28 7.25e-05 TGAGGAATCC AGCTGGAT CCGGTCTGAG chr17:42467234-42467314 30 7.25e-05 CCCTTCCCCC ATCTGGCT GTACAGCTGT chr1:15110668-15110748 30 8.42e-05 acatcctttc aactggtt gaaccagacc chr6:27805244-27805324 12 8.42e-05 ctgcctctta aactggtt tgttccagat chr21:40580956-40581036 34 8.42e-05 aactggctga aactggtt aaaaccagta chr20:39890786-39890866 38 1.13e-04 caactgccac agctgctt aactgatttc chr1:68577603-68577683 6 1.13e-04 CAGAA AACTGGCT TGCTCTGGTA chr2:175468121-175468201 7 1.13e-04 atgtgc aactggct gatttgaggt chr5:78389681-78389761 8 1.13e-04 TAAGAAA AACTGGCT TGAACTAGCT chr2:96890971-96891051 30 1.13e-04 aggcagaggt aactggct cattccagct chrX:48568088-48568168 22 1.13e-04 tgactgctta aactggct gtgatcagcc chr19:45793869-45793949 70 1.13e-04 GACCAGCCTT AACTGGCT GTG chr15:67253805-67253885 28 1.13e-04 TTGATGTTGG AACTGGCT TGGACTCGTT chr22:41999965-42000045 12 1.49e-04 ATGACATGGC AGCTGCCT CCAGGGGTTA chr17:8042309-8042389 1 1.49e-04 . AGCTGCCT ATCAACAcgc chr2:20624664-20624744 45 1.83e-04 CCTCTTCTGA ATCTGGAT TAGAATCTTC chr3:193973982-193974062 36 1.83e-04 GGAGGTCCGC AGCTGGCC ATCTGCGCCA chr10:86014653-86014733 44 1.83e-04 gtccagacct agctggcc acaggagctt chr5:42583571-42583651 50 1.83e-04 GACCAGTTTG AGCTGGCC AGTTCACACA chr22:20766996-20767076 65 1.83e-04 actggacagg agctggcc caagttcc chr14:23630329-23630409 41 1.98e-04 AGCCAGTTTC AGCAGGTT CTTTCCACCT chr7:150010546-150010626 33 2.57e-04 gcctccaggt agcaggct tcacagaata chr1:120279970-120280050 44 2.57e-04 GATAAGGGAA ATCTGCTT GAGTCAGCAC chr16:30786796-30786876 57 2.57e-04 GGCCGGCCTG AACTGGAT CCTGCGGACC chr19:46524828-46524908 15 3.37e-04 AGGAGGAGGT AGCTGGTA GGCGTGGCCC chr11:8228055-8228135 35 4.20e-04 GTTCGGGGAC AGCTGGCA GCCCGATAAG chr13:38533672-38533752 30 4.20e-04 caaactcact atctggcc ctgaccagaa chr19:1836910-1836990 38 4.20e-04 CCTGGGGCTT AGCTGGAC AAAAAAGATA chr1:202045343-202045423 13 4.20e-04 AGAACCTGAT AACTGCTT GGGCTGGGCT chr9:33240041-33240121 57 4.20e-04 TGGTCTCTCC ATCTGGCC CTAGATAAGA chr1:87645980-87646060 52 4.20e-04 CTCAACCTCC AGCTGGCA CGTTGTGAAA chr6:4985115-4985195 53 4.20e-04 CTTCCTGCTG GGCTGGTT CCATCAGGTT chr21:39848475-39848555 69 4.20e-04 CTGGGCACAG AACTGCTT AAAC chr12:8845364-8845444 30 4.20e-04 ACTGTTGTCA GGCTGGTT CTAGCCGGCT chr10:80787322-80787402 5 4.20e-04 GTTT ATCTGGCC CAACAGCCTT chr1:206274326-206274406 69 4.20e-04 gactggctct ggctggtt tact chr1:151512293-151512373 38 4.20e-04 AGTCTGAGTG AGCTGGAC CTTGGTGCCT chr16:55469411-55469491 28 4.20e-04 CAGGGGTATA ATCTGGCC TTCCCATCAG chr20:62152451-62152531 25 4.20e-04 GGCCGGTTTG GGCTGGTT GGAgccgccc chr17:73781181-73781261 41 4.83e-04 GGCCGGTCCC AACTGCCT CCAACTGCCA chr1:207020994-207021074 66 4.83e-04 acacaggcct ggctggct ttgctac chr7:73779866-73779946 12 4.83e-04 ccaatgggct ggctggct ctggataggg chr16:23690017-23690097 18 4.83e-04 GTCCGTGTCA ATCAGGTT TTCCCCGGCT chr5:90677675-90677755 14 4.83e-04 CACCCCCCAG AACTGGTC CGAAACAGGA chr11:111797927-11179800 39 4.83e-04 GGCTGGCTCT GGCTGGCT GGAGTCGGGC chr9:100987554-100987634 15 5.80e-04 CCAATCAGCC ATCTGGTG CTATCTCCTA chr1:201123016-201123096 40 5.80e-04 CTTCATGCTT ATCAGGCT TGCTGGGCCA chr14:61456483-61456563 17 5.80e-04 tcccactcct atcaggct tttccactga chr19:19600140-19600220 35 5.80e-04 AACCGGTTGG AACTGGCC GTTGCCATGG chr5:10505818-10505898 54 5.80e-04 AAAAAAGAGG AACTggcc aggtgcggtg chr7:135718345-135718425 73 5.80e-04 AAGATAAGAC AGCTGCTC chr11:65264988-65265068 49 5.80e-04 GACCGGCTAG AGCCGGTT AGAACCAGTG chr11:34258312-34258392 12 5.80e-04 TCAGCCGCAA AGCTGCTC GCTCCTAGAT chr17:27054416-27054496 15 5.80e-04 TGGCTCACAG AGCTGCTC TGTCCGCCGG chr19:12476275-12476355 5 5.80e-04 CCAC AGCCGGTT CTGGCCGGTT chr20:5591611-5591691 43 5.80e-04 AACCGGTTTC AGCTGCTC CAGACCAAAC chr7:102082203-102082283 17 6.96e-04 CAAGTGAACC ATCTGGCG TGGAGCTGAG chr3:101249326-101249406 1 6.96e-04 . atctgcat agagcagaga chr10:65389917-65389997 9 6.96e-04 ACGCGCAC ATCTGGCG GCCCAGGAGC chr14:69229878-69229958 71 6.96e-04 GCTTCCCGCC AGCTGGAG AA chr1:12043677-12043757 46 6.96e-04 GGAGGAACCC AGCTGCCC TGCATCACCC chr3:123361337-123361417 44 6.96e-04 TGCCAGTGAC AGCTGGAG GGAGCTAGAA chr1:90367899-90367979 16 6.96e-04 CCATTTTCAG AGCTGCCC CAAACCAGTT chr1:11741562-11741642 11 6.96e-04 CCATCCCTGC AGCTGCCC ACGCAAAAGC chr7:1067999-1068079 45 6.96e-04 AACCAGATCC AGCCGGCT GGACCGTGAC chr10:75126746-75126826 38 6.96e-04 acaggagagg agctgccc caagttcctg chr12:7394879-7394959 22 7.97e-04 tagataagga agctggaa gcttgcacag chr17:27945083-27945163 35 7.97e-04 GCCGGTGCTG AGCAGCTT CCCGTCTGCG chr17:31187280-31187360 49 7.97e-04 agccagtttg gtctggtt ttctttttag chr9:116303533-116303613 53 7.97e-04 TTCCAGTTCT GTCTGGTT CCACAGAAAC chr10:73487655-73487735 39 7.97e-04 TGCTGCTAAA AACAGGCT GAAACCGACC chr2:122614108-122614188 65 7.97e-04 acctgcctgg aactggtg caaactgg chr6:44443621-44443701 40 7.97e-04 CGACACGGTG AGCTGGAA CAAACCGCTT chr12:51762646-51762726 24 9.42e-04 AGCCTCATGC AGCAGCCT CAGCCCAGca chr15:88214705-88214785 61 9.42e-04 TCCTGAACAC AGCTGCTG CATTTATCTT chr11:67367914-67367994 35 9.42e-04 CTGAGGGGCC AACTGGCG GGGACTGTGG chr8:141629153-141629233 5 9.42e-04 GAGC AGCTGCTG GCTCCTTATC chr15:81194802-81194882 31 9.42e-04 TCTCTCGGAT AGCAGCCT GGGAGTGGCC chr4:696618-696698 46 9.42e-04 tttgggccag agcagcct tggaaagcca chr15:90777241-90777321 53 1.10e-03 TTGGCAGGCG AGCTGCCG GCTCCAAGCG chr4:140099220-140099300 57 1.10e-03 TGCCGGCGTT TGCTGGCT GTCGGGTGGC chr2:145263174-145263254 40 1.10e-03 AGGTTGCTGA GACTGGTT GAAGCCAGCC chr19:39310031-39310111 49 1.10e-03 cgggctgcac agctgcta tcctataatt chr15:69407136-69407216 48 1.10e-03 ATCTCTCCAG AGCTGCCG CCACTGCTGG chr2:158731518-158731598 29 1.10e-03 ATCTGGCACA AACTGGAC AGAGCCGAGC chr6:28521856-28521936 53 1.10e-03 ccgacctttc aactggac ccacgcaagt chr19:11877997-11878077 56 1.10e-03 TGAGAGGAGA GACTGGTT GGAACCGGCC chr7:86562699-86562779 65 1.10e-03 gaccagctga gactggtt agaaccaa chr7:104583989-104584069 32 1.10e-03 CTCTAACCAG TGCTGGCT TGTGAGAACC chr1:169278521-169278601 62 1.10e-03 gaccagttaa gactggtt agaaccaaga chr19:49661006-49661086 27 1.10e-03 AAAGTGGAGG ATCCGGTT TGCTCTGGGC chr3:184080672-184080752 10 1.10e-03 AAATTCCCA AACTGGAC GGATCCGGCT chr22:31394464-31394544 56 1.10e-03 aaccagtttg aactggac aggagctgtc chr1:182838533-182838613 21 1.10e-03 gaccagtctt atccggtt tggcctggtc chr1:16380765-16380845 72 1.24e-03 AAGTGAGAca agctgcac a chr1:22076496-22076576 2 1.24e-03 c atctgccc tcaatccatc chr14:71353498-71353578 12 1.24e-03 cagtgttctt atctggag ctcaagggcc chrX:54834915-54834995 56 1.24e-03 TACCGGATCC ATCCGGCT GGGAAGGGAG chr1:16212837-16212917 68 1.24e-03 AGTTTGAGTT GGCTGCTT GCCAC chr9:139481749-139481829 64 1.24e-03 AACCAGCACT AGCCGGAT GGTTGCGTT chr10:71217781-71217861 47 1.37e-03 accagatcca ggctgcct gactccAGTT chr16:88866474-88866554 5 1.37e-03 GTCC ATCAGCTT ATCTATGGAA chr11:62649147-62649227 30 1.37e-03 AGCCAGTTGC AACCGGTT TCTGAAGTAA chr10:52086751-52086831 62 1.37e-03 GGAAGGGTGG GGCTGCCT GGCCATATCA chr10:61469564-61469644 46 1.37e-03 GGCCAGTCTG AACCGGTT GTGACTGCGC chr2:74531658-74531738 32 1.37e-03 TTCCTGCTGT GGCTGGTC TGGCCGCAGG chr2:61765387-61765467 33 1.37e-03 AACCGGTTGA AACCGGTT CAGACTGGGA chr20:37489207-37489287 20 1.37e-03 tgcaggccag atctggaa gtggcaagtt chr6:64282193-64282273 30 1.37e-03 GCCATTCATC AACCGGTT CACACCGGCG chr16:25783237-25783317 16 1.59e-03 TCTTTTTATC TTCTGGTT CCAAACAGCA chr6:20575569-20575649 40 1.59e-03 TGCGGGGACC ATCTGCTG TGGTTCCCAG chr12:125369563-12536964 5 1.59e-03 agat ggctggcc ccgcccctgg chrX:39874282-39874362 64 1.59e-03 GGCTGGAAGG AACCGGCT GTGACTAAA chr17:28580558-28580638 56 1.59e-03 GGCAGGATTC GGCTGGCC CTTTTGACTT chr17:46103980-46104060 46 1.59e-03 GCGCAGACCA AACCGGCT GCAGCCAGCT chr17:7589386-7589466 33 1.59e-03 TACCAGGAAG AACCGGCT CGGGCCGGAG chr4:78079411-78079491 31 1.59e-03 AAGAGGCCAG GGCTGGCC GGTCTTACCC chr2:127431756-127431836 53 1.81e-03 CTTATCAGTC AGCTGCAG GGGTACCTGG chr2:68220631-68220711 41 1.81e-03 CTTCTCAGAC AGCTGCAG TAACACTTAT chr3:156178167-156178247 17 1.81e-03 ACAATGCTTC ATCTGCTA TCCTTGAGAA chr5:55606800-55606880 23 1.81e-03 GACAAAAAAC AGCTGCAG CCCTTCTTTT chr2:239331068-239331148 27 1.81e-03 CTCCTCCGGC AGCTGCAG TCAGGTGAGG chr10:12105584-12105664 71 1.81e-03 tctggaatgc agctgcag ag chr9:132976847-132976927 44 1.81e-03 ggggtgggga ttctggct acagctgggc chr5:158821164-158821244 49 1.81e-03 gggagtcctt atctgcta tagcagcgta chr12:118558725-11855880 45 1.81e-03 TGCTGGTCTA AACTGGAA TTCTAAACTG chr1:3691534-3691614 26 2.02e-03 TCTTGAGGGT GGCAGGCT GTGCAGGCTC chr10:29096390-29096470 60 2.02e-03 TTATTTTTTT GGCAGGCT TGAGATAAGC chr5:139017467-139017547 58 2.02e-03 CTCTGGCCCC AGCCGGCC GGTGTGCTGG chr12:28343777-28343857 46 2.02e-03 GGGTACCGGT ATCTGCAC GTCCCAGAAT chr7:100728550-100728630 47 2.02e-03 AGGCCGACCT GGCTGGTG GACTCCAGCC chr3:13049158-13049238 41 2.23e-03 TTTTCTTTGC TGCTGCTT GAAAGCCTCC chrX:55041566-55041646 50 2.23e-03 CTGATAATTC TGCTGCTT TGAGATAGGA chr9:37197252-37197332 31 2.23e-03 ATGTCCTGGA AGCAGCTC TTATCTCTCC chr17:27239536-27239616 25 2.23e-03 TACCATCTCC TGCTGCTT GCGGGGGAGT chr1:162342707-162342787 28 2.23e-03 TGATAAGCAG AGCAGCTC TGCTAAGCCA chr10:105378635-10537871 69 2.23e-03 GAGCCGAGAT AGCAGCTC CCTT chr1:204196593-204196673 24 2.51e-03 TCTCAGCCCT ATCAGCAT CTAGTCAGGA chr13:39573087-39573167 16 2.51e-03 ccttcagtgt gtctggcc tgcacatgtg chr1:90287445-90287525 38 2.51e-03 TACCGGTATA ATCCGCTT CTAGCTTGTT chr17:40464463-40464543 28 2.51e-03 GGCTCGCCCC GGCTGGAC CCCCGCACTG chr5:90675932-90676012 44 2.51e-03 ACTAGACCGG AGCAGGAG AGGACCGGCC chr19:38643788-38643868 62 2.77e-03 ATAAGGCCAG AGCCGGCG TGCAGCTGTG chr5:168240770-168240850 13 2.77e-03 AAAGGGAGAT ATCAGGCA CTTGGGCAGG chr10:126738258-12673833 69 2.77e-03 CTCAAAAACA AGCAGGAA CGGC chr18:46355336-46355416 55 2.77e-03 GGCCCCTGCT ATCTGCAG AGCTGAGCTG chr17:33214008-33214088 13 2.77e-03 CAATAAGATT AGCAGGAA AGAAAAAGGA chrX:107801622-107801702 5 2.77e-03 TCAC ATCAGGCA ACCCTACTGT chr19:14225027-14225107 69 2.77e-03 GTGGGGTGGG AGCAGGAA GAGA chr9:135860341-135860421 41 3.06e-03 GCTGTTCTGA AGCAGCTG TGATCCCTCT chr12:57915891-57915971 30 3.06e-03 ACTGTCACAA GGCCGGTT GTGACTGGAG chr10:13341537-13341617 38 3.06e-03 TGCCTGCCTG GGCCGGTT CCAGGCAGCC chr5:90236505-90236585 29 3.41e-03 ATGCTGCAAA GGCTGGAG CCAGCCAGTT chr11:58541875-58541955 11 3.41e-03 gattttacca agctgtct caagccagag chr17:33212263-33212343 73 3.41e-03 ATTATGATTA TTCTGCTT chr1:156928257-156928337 70 3.74e-03 CCAAATGACT ATCAGGAG CTC chrX:47676972-47677052 50 3.74e-03 AGATAAGCCT AACTGCAA GTCCAGATAT chr20:3890843-3890923 35 3.74e-03 TGAGCTTGGT ATCAGCCC CATTGTCCCT chr7:104654040-104654120 34 3.74e-03 CTCCGCTTTT ATCCGGTG CCCGGAGCCT chr1:212810206-212810286 15 3.74e-03 CTGGGGGCCC ATCCGGTG TTTCTCTCCA chr8:125539555-125539635 40 3.74e-03 actagtctgt gactggtg gtcacttgtc chr17:72711379-72711459 33 4.05e-03 TCACACCCTA ATCAGGAA TGAGTGGGTG chr4:40292557-40292637 50 4.38e-03 cacttgatgg atcagctg acatcacctg chr1:206266192-206266272 64 4.38e-03 agagatattt ggcaggcc ttctggaca chr1:26087562-26087642 27 4.38e-03 ctctctgaga ttcaggtt tcttgtctgt chr1:162356272-162356352 48 4.77e-03 CTCAGCACAC AGCTGTAT CCTGGTAGAT chr5:73629976-73630056 50 4.77e-03 CAACAGTCAG AACAGGAA GAAATGATAA chr6:15622057-15622137 28 4.77e-03 GGCCTGTCTT TTCAGGCT TAGGCCAGTG chr19:40951982-40952062 37 4.77e-03 GACCAGTTCT TGCCGGTT GGAGTTTGTC chr11:57415832-57415912 35 5.15e-03 TGGCTGAAGG TGCTGGAG GCAGAGGATA chr15:64731393-64731473 36 5.15e-03 TATAAATGAG AACTGTTT ATCACAGAGC chr12:65114779-65114859 63 5.15e-03 TGCCAGATGG GGCAGGTG AGCATATGCT chr22:50098339-50098419 16 5.15e-03 TTATCTCTGC TGCTGCCC CCAGCCCAGC chr12:124068903-12406898 36 5.15e-03 GGTCCTTCGG AGCCGCCG TCCAGGCTCG chr13:99628371-99628451 9 5.15e-03 GAAAAAAC TTCTGGTA TCACTGTTGG chr5:149879195-149879275 30 5.57e-03 AGGCCTCTGG GTCAGCCT GCTCTGTGAC chr10:103578199-10357827 20 5.57e-03 TTGCGCTGCA GACCGGCT CAGACCGGTC chr9:135670275-135670355 28 5.57e-03 gacctgttgt gaccggct cacaccgcat chrX:153607533-153607613 67 5.97e-03 CTCAGGGCAC GGCCGGTC TGTGCC chr3:13692193-13692273 52 6.38e-03 tgcgggccag tgcaggcc aggcccggcc chr19:17622842-17622922 36 6.38e-03 CGCGCCCACT GTCTGCAC CTCGGCTACG chr19:39373568-39373648 52 6.38e-03 caaatgctgc agctgtcc ttatctcaca chr1:16359480-16359560 49 6.38e-03 CACTGGACAT TGCAGGCC TGGGTCTGTT chrX:119468579-119468659 6 6.38e-03 cccca ttctgctc ctactgataa chr18:3603149-3603229 68 6.38e-03 ACCCTCAGGC ACCTGGCT GCGAA chr1:208041664-208041744 26 6.38e-03 GGGACTAGGC GGCCGGCC TGGGGCAGTT chr3:182655582-182655662 15 6.68e-03 ttgcagtcct atcagcaa cttacagatg chr17:31298372-31298452 22 6.68e-03 aaagaagaca tgctgcac ccaagctggg chr1:20525617-20525697 26 7.09e-03 GCACAACAGT GGCAGGAG ATAGTCCTTT chr11:67116014-67116094 5 7.09e-03 ggag tgcaggtg cggggtgaat chr12:4671364-4671444 69 7.09e-03 CCCGCCGCCT ATCCGCAC CGGA chr19:45458224-45458304 22 7.55e-03 GCCGTACAGT GGCCGGTA AAGCTCAAGA chr8:102049381-102049461 70 7.55e-03 GTCATTTGCT GTCAGGCA TCC chr1:234694339-234694419 59 7.55e-03 CTCCTCCCTG TACCGGCT TCCTAGAGGC chr1:161736041-161736121 47 7.55e-03 GGAGTATTTT GTCCGCCT GCCGCCGCCG chr19:13694073-13694153 11 8.02e-03 CTTTACAGAA GTCTGCAA ATCCTAGATT chr21:40357691-40357771 41 8.02e-03 CTCACCCAAC ATCTGTCC TGCGGCGGGA chr10:14223359-14223439 71 8.37e-03 AAAGCTGAGA GACAGGCA TC chr1:101749213-101749293 23 8.37e-03 CCTTATCCAT GACAGGCA AGGCAGACCA chr20:32007091-32007171 22 9.59e-03 CCTGTGAGTG GACAGCCC AGGAAGGAGT chr2:113342099-113342179 35 1.05e-02 ACCGGAAAAA ACCAGGCT GGGCTGGGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AKCTGGHT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:40586644-40586724 1.4e-05 56_[+2]_16 chr1:31981148-31981228 1.4e-05 16_[+2]_56 chr9:129719827-129719907 1.4e-05 37_[+2]_35 chr20:49407351-49407431 1.4e-05 28_[+2]_44 chr12:113860165-11386024 1.4e-05 48_[+2]_24 chr6:133133606-133133686 1.4e-05 39_[+2]_33 chr9:130805785-130805865 1.4e-05 41_[+2]_31 chr6:47210292-47210372 3.2e-05 46_[+2]_26 chr19:18385854-18385934 3.2e-05 15_[+2]_57 chr16:19019739-19019819 3.2e-05 26_[+2]_46 chr15:101647956-10164803 4.4e-05 60_[+2]_12 chr1:37945337-37945417 4.4e-05 13_[+2]_59 chr7:129781480-129781560 4.4e-05 33_[+2]_39 chr2:178504424-178504504 7.3e-05 25_[+2]_47 chrX:152952282-152952362 7.3e-05 30_[+2]_42 chr12:14410633-14410713 7.3e-05 53_[+2]_19 chr5:36242374-36242454 7.3e-05 27_[+2]_45 chr17:42467234-42467314 7.3e-05 29_[+2]_43 chr1:15110668-15110748 8.4e-05 29_[+2]_43 chr6:27805244-27805324 8.4e-05 11_[+2]_61 chr21:40580956-40581036 8.4e-05 33_[+2]_39 chr20:39890786-39890866 0.00011 37_[+2]_35 chr1:68577603-68577683 0.00011 5_[+2]_67 chr2:175468121-175468201 0.00011 6_[+2]_66 chr5:78389681-78389761 0.00011 7_[+2]_65 chr2:96890971-96891051 0.00011 29_[+2]_43 chrX:48568088-48568168 0.00011 21_[+2]_51 chr19:45793869-45793949 0.00011 69_[+2]_3 chr15:67253805-67253885 0.00011 27_[+2]_45 chr22:41999965-42000045 0.00015 11_[+2]_61 chr17:8042309-8042389 0.00015 [+2]_72 chr2:20624664-20624744 0.00018 44_[+2]_28 chr3:193973982-193974062 0.00018 35_[+2]_37 chr10:86014653-86014733 0.00018 43_[+2]_29 chr5:42583571-42583651 0.00018 49_[+2]_23 chr22:20766996-20767076 0.00018 64_[+2]_8 chr14:23630329-23630409 0.0002 40_[+2]_32 chr7:150010546-150010626 0.00026 32_[+2]_40 chr1:120279970-120280050 0.00026 43_[+2]_29 chr16:30786796-30786876 0.00026 56_[+2]_16 chr19:46524828-46524908 0.00034 14_[+2]_58 chr11:8228055-8228135 0.00042 34_[+2]_38 chr13:38533672-38533752 0.00042 29_[+2]_43 chr19:1836910-1836990 0.00042 37_[+2]_35 chr1:202045343-202045423 0.00042 12_[+2]_60 chr9:33240041-33240121 0.00042 56_[+2]_16 chr1:87645980-87646060 0.00042 51_[+2]_21 chr6:4985115-4985195 0.00042 52_[+2]_20 chr21:39848475-39848555 0.00042 68_[+2]_4 chr12:8845364-8845444 0.00042 29_[+2]_43 chr10:80787322-80787402 0.00042 4_[+2]_68 chr1:206274326-206274406 0.00042 68_[+2]_4 chr1:151512293-151512373 0.00042 37_[+2]_35 chr16:55469411-55469491 0.00042 27_[+2]_45 chr20:62152451-62152531 0.00042 24_[+2]_48 chr17:73781181-73781261 0.00048 40_[+2]_32 chr1:207020994-207021074 0.00048 65_[+2]_7 chr7:73779866-73779946 0.00048 11_[+2]_61 chr16:23690017-23690097 0.00048 17_[+2]_55 chr5:90677675-90677755 0.00048 13_[+2]_59 chr11:111797927-11179800 0.00048 38_[+2]_34 chr9:100987554-100987634 0.00058 14_[+2]_58 chr1:201123016-201123096 0.00058 39_[+2]_33 chr14:61456483-61456563 0.00058 16_[+2]_56 chr19:19600140-19600220 0.00058 34_[+2]_38 chr5:10505818-10505898 0.00058 53_[+2]_19 chr7:135718345-135718425 0.00058 72_[+2] chr11:65264988-65265068 0.00058 48_[+2]_24 chr11:34258312-34258392 0.00058 11_[+2]_61 chr17:27054416-27054496 0.00058 14_[+2]_58 chr19:12476275-12476355 0.00058 4_[+2]_68 chr20:5591611-5591691 0.00058 42_[+2]_30 chr7:102082203-102082283 0.0007 16_[+2]_56 chr3:101249326-101249406 0.0007 [+2]_72 chr10:65389917-65389997 0.0007 8_[+2]_64 chr14:69229878-69229958 0.0007 70_[+2]_2 chr1:12043677-12043757 0.0007 45_[+2]_27 chr3:123361337-123361417 0.0007 43_[+2]_29 chr1:90367899-90367979 0.0007 15_[+2]_57 chr1:11741562-11741642 0.0007 10_[+2]_62 chr7:1067999-1068079 0.0007 44_[+2]_28 chr10:75126746-75126826 0.0007 37_[+2]_35 chr12:7394879-7394959 0.0008 21_[+2]_51 chr17:27945083-27945163 0.0008 34_[+2]_38 chr17:31187280-31187360 0.0008 48_[+2]_24 chr9:116303533-116303613 0.0008 52_[+2]_20 chr10:73487655-73487735 0.0008 38_[+2]_34 chr2:122614108-122614188 0.0008 64_[+2]_8 chr6:44443621-44443701 0.0008 39_[+2]_33 chr12:51762646-51762726 0.00094 23_[+2]_49 chr15:88214705-88214785 0.00094 60_[+2]_12 chr11:67367914-67367994 0.00094 34_[+2]_38 chr8:141629153-141629233 0.00094 4_[+2]_68 chr15:81194802-81194882 0.00094 30_[+2]_42 chr4:696618-696698 0.00094 45_[+2]_27 chr15:90777241-90777321 0.0011 52_[+2]_20 chr4:140099220-140099300 0.0011 56_[+2]_16 chr2:145263174-145263254 0.0011 39_[+2]_33 chr19:39310031-39310111 0.0011 48_[+2]_24 chr15:69407136-69407216 0.0011 47_[+2]_25 chr2:158731518-158731598 0.0011 28_[+2]_44 chr6:28521856-28521936 0.0011 52_[+2]_20 chr19:11877997-11878077 0.0011 55_[+2]_17 chr7:86562699-86562779 0.0011 64_[+2]_8 chr7:104583989-104584069 0.0011 31_[+2]_41 chr1:169278521-169278601 0.0011 61_[+2]_11 chr19:49661006-49661086 0.0011 26_[+2]_46 chr3:184080672-184080752 0.0011 9_[+2]_63 chr22:31394464-31394544 0.0011 55_[+2]_17 chr1:182838533-182838613 0.0011 20_[+2]_52 chr1:16380765-16380845 0.0012 71_[+2]_1 chr1:22076496-22076576 0.0012 1_[+2]_71 chr14:71353498-71353578 0.0012 11_[+2]_61 chrX:54834915-54834995 0.0012 55_[+2]_17 chr1:16212837-16212917 0.0012 67_[+2]_5 chr9:139481749-139481829 0.0012 63_[+2]_9 chr10:71217781-71217861 0.0014 46_[+2]_26 chr16:88866474-88866554 0.0014 4_[+2]_68 chr11:62649147-62649227 0.0014 29_[+2]_43 chr10:52086751-52086831 0.0014 61_[+2]_11 chr10:61469564-61469644 0.0014 45_[+2]_27 chr2:74531658-74531738 0.0014 31_[+2]_41 chr2:61765387-61765467 0.0014 32_[+2]_40 chr20:37489207-37489287 0.0014 19_[+2]_53 chr6:64282193-64282273 0.0014 29_[+2]_43 chr16:25783237-25783317 0.0016 15_[+2]_57 chr6:20575569-20575649 0.0016 39_[+2]_33 chr12:125369563-12536964 0.0016 4_[+2]_68 chrX:39874282-39874362 0.0016 63_[+2]_9 chr17:28580558-28580638 0.0016 55_[+2]_17 chr17:46103980-46104060 0.0016 45_[+2]_27 chr17:7589386-7589466 0.0016 32_[+2]_40 chr4:78079411-78079491 0.0016 30_[+2]_42 chr2:127431756-127431836 0.0018 52_[+2]_20 chr2:68220631-68220711 0.0018 40_[+2]_32 chr3:156178167-156178247 0.0018 16_[+2]_56 chr5:55606800-55606880 0.0018 22_[+2]_50 chr2:239331068-239331148 0.0018 26_[+2]_46 chr10:12105584-12105664 0.0018 70_[+2]_2 chr9:132976847-132976927 0.0018 43_[+2]_29 chr5:158821164-158821244 0.0018 48_[+2]_24 chr12:118558725-11855880 0.0018 44_[+2]_28 chr1:3691534-3691614 0.002 25_[+2]_47 chr10:29096390-29096470 0.002 59_[+2]_13 chr5:139017467-139017547 0.002 57_[+2]_15 chr12:28343777-28343857 0.002 45_[+2]_27 chr7:100728550-100728630 0.002 46_[+2]_26 chr3:13049158-13049238 0.0022 40_[+2]_32 chrX:55041566-55041646 0.0022 49_[+2]_23 chr9:37197252-37197332 0.0022 30_[+2]_42 chr17:27239536-27239616 0.0022 24_[+2]_48 chr1:162342707-162342787 0.0022 27_[+2]_45 chr10:105378635-10537871 0.0022 68_[+2]_4 chr1:204196593-204196673 0.0025 23_[+2]_49 chr13:39573087-39573167 0.0025 15_[+2]_57 chr1:90287445-90287525 0.0025 37_[+2]_35 chr17:40464463-40464543 0.0025 27_[+2]_45 chr5:90675932-90676012 0.0025 43_[+2]_29 chr19:38643788-38643868 0.0028 61_[+2]_11 chr5:168240770-168240850 0.0028 12_[+2]_60 chr10:126738258-12673833 0.0028 68_[+2]_4 chr18:46355336-46355416 0.0028 54_[+2]_18 chr17:33214008-33214088 0.0028 12_[+2]_60 chrX:107801622-107801702 0.0028 4_[+2]_68 chr19:14225027-14225107 0.0028 68_[+2]_4 chr9:135860341-135860421 0.0031 40_[+2]_32 chr12:57915891-57915971 0.0031 29_[+2]_43 chr10:13341537-13341617 0.0031 37_[+2]_35 chr5:90236505-90236585 0.0034 28_[+2]_44 chr11:58541875-58541955 0.0034 10_[+2]_62 chr17:33212263-33212343 0.0034 72_[+2] chr1:156928257-156928337 0.0037 69_[+2]_3 chrX:47676972-47677052 0.0037 49_[+2]_23 chr20:3890843-3890923 0.0037 34_[+2]_38 chr7:104654040-104654120 0.0037 33_[+2]_39 chr1:212810206-212810286 0.0037 14_[+2]_58 chr8:125539555-125539635 0.0037 39_[+2]_33 chr17:72711379-72711459 0.0041 32_[+2]_40 chr4:40292557-40292637 0.0044 49_[+2]_23 chr1:206266192-206266272 0.0044 63_[+2]_9 chr1:26087562-26087642 0.0044 26_[+2]_46 chr1:162356272-162356352 0.0048 47_[+2]_25 chr5:73629976-73630056 0.0048 49_[+2]_23 chr6:15622057-15622137 0.0048 27_[+2]_45 chr19:40951982-40952062 0.0048 36_[+2]_36 chr11:57415832-57415912 0.0052 34_[+2]_38 chr15:64731393-64731473 0.0052 35_[+2]_37 chr12:65114779-65114859 0.0052 62_[+2]_10 chr22:50098339-50098419 0.0052 15_[+2]_57 chr12:124068903-12406898 0.0052 35_[+2]_37 chr13:99628371-99628451 0.0052 8_[+2]_64 chr5:149879195-149879275 0.0056 29_[+2]_43 chr10:103578199-10357827 0.0056 19_[+2]_53 chr9:135670275-135670355 0.0056 27_[+2]_45 chrX:153607533-153607613 0.006 66_[+2]_6 chr3:13692193-13692273 0.0064 51_[+2]_21 chr19:17622842-17622922 0.0064 35_[+2]_37 chr19:39373568-39373648 0.0064 51_[+2]_21 chr1:16359480-16359560 0.0064 48_[+2]_24 chrX:119468579-119468659 0.0064 5_[+2]_67 chr18:3603149-3603229 0.0064 67_[+2]_5 chr1:208041664-208041744 0.0064 25_[+2]_47 chr3:182655582-182655662 0.0067 14_[+2]_58 chr17:31298372-31298452 0.0067 21_[+2]_51 chr1:20525617-20525697 0.0071 25_[+2]_47 chr11:67116014-67116094 0.0071 4_[+2]_68 chr12:4671364-4671444 0.0071 68_[+2]_4 chr19:45458224-45458304 0.0076 21_[+2]_51 chr8:102049381-102049461 0.0076 69_[+2]_3 chr1:234694339-234694419 0.0076 58_[+2]_14 chr1:161736041-161736121 0.0076 46_[+2]_26 chr19:13694073-13694153 0.008 10_[+2]_62 chr21:40357691-40357771 0.008 40_[+2]_32 chr10:14223359-14223439 0.0084 70_[+2]_2 chr1:101749213-101749293 0.0084 22_[+2]_50 chr20:32007091-32007171 0.0096 21_[+2]_51 chr2:113342099-113342179 0.01 34_[+2]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AKCTGGHT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AKCTGGHT width=8 seqs=217 chr22:40586644-40586724 ( 57) AGCTGGTT 1 chr1:31981148-31981228 ( 17) AGCTGGTT 1 chr9:129719827-129719907 ( 38) AGCTGGTT 1 chr20:49407351-49407431 ( 29) AGCTGGTT 1 chr12:113860165-11386024 ( 49) AGCTGGTT 1 chr6:133133606-133133686 ( 40) AGCTGGTT 1 chr9:130805785-130805865 ( 42) AGCTGGTT 1 chr6:47210292-47210372 ( 47) AGCTGGCT 1 chr19:18385854-18385934 ( 16) AGCTGGCT 1 chr16:19019739-19019819 ( 27) AGCTGGCT 1 chr15:101647956-10164803 ( 61) ATCTGGTT 1 chr1:37945337-37945417 ( 14) ATCTGGTT 1 chr7:129781480-129781560 ( 34) ATCTGGTT 1 chr2:178504424-178504504 ( 26) ATCTGGCT 1 chrX:152952282-152952362 ( 31) ATCTGGCT 1 chr12:14410633-14410713 ( 54) AGCTGGAT 1 chr5:36242374-36242454 ( 28) AGCTGGAT 1 chr17:42467234-42467314 ( 30) ATCTGGCT 1 chr1:15110668-15110748 ( 30) AACTGGTT 1 chr6:27805244-27805324 ( 12) AACTGGTT 1 chr21:40580956-40581036 ( 34) AACTGGTT 1 chr20:39890786-39890866 ( 38) AGCTGCTT 1 chr1:68577603-68577683 ( 6) AACTGGCT 1 chr2:175468121-175468201 ( 7) AACTGGCT 1 chr5:78389681-78389761 ( 8) AACTGGCT 1 chr2:96890971-96891051 ( 30) AACTGGCT 1 chrX:48568088-48568168 ( 22) AACTGGCT 1 chr19:45793869-45793949 ( 70) AACTGGCT 1 chr15:67253805-67253885 ( 28) AACTGGCT 1 chr22:41999965-42000045 ( 12) AGCTGCCT 1 chr17:8042309-8042389 ( 1) AGCTGCCT 1 chr2:20624664-20624744 ( 45) ATCTGGAT 1 chr3:193973982-193974062 ( 36) AGCTGGCC 1 chr10:86014653-86014733 ( 44) AGCTGGCC 1 chr5:42583571-42583651 ( 50) AGCTGGCC 1 chr22:20766996-20767076 ( 65) AGCTGGCC 1 chr14:23630329-23630409 ( 41) AGCAGGTT 1 chr7:150010546-150010626 ( 33) AGCAGGCT 1 chr1:120279970-120280050 ( 44) ATCTGCTT 1 chr16:30786796-30786876 ( 57) AACTGGAT 1 chr19:46524828-46524908 ( 15) AGCTGGTA 1 chr11:8228055-8228135 ( 35) AGCTGGCA 1 chr13:38533672-38533752 ( 30) ATCTGGCC 1 chr19:1836910-1836990 ( 38) AGCTGGAC 1 chr1:202045343-202045423 ( 13) AACTGCTT 1 chr9:33240041-33240121 ( 57) ATCTGGCC 1 chr1:87645980-87646060 ( 52) AGCTGGCA 1 chr6:4985115-4985195 ( 53) GGCTGGTT 1 chr21:39848475-39848555 ( 69) AACTGCTT 1 chr12:8845364-8845444 ( 30) GGCTGGTT 1 chr10:80787322-80787402 ( 5) ATCTGGCC 1 chr1:206274326-206274406 ( 69) GGCTGGTT 1 chr1:151512293-151512373 ( 38) AGCTGGAC 1 chr16:55469411-55469491 ( 28) ATCTGGCC 1 chr20:62152451-62152531 ( 25) GGCTGGTT 1 chr17:73781181-73781261 ( 41) AACTGCCT 1 chr1:207020994-207021074 ( 66) GGCTGGCT 1 chr7:73779866-73779946 ( 12) GGCTGGCT 1 chr16:23690017-23690097 ( 18) ATCAGGTT 1 chr5:90677675-90677755 ( 14) AACTGGTC 1 chr11:111797927-11179800 ( 39) GGCTGGCT 1 chr9:100987554-100987634 ( 15) ATCTGGTG 1 chr1:201123016-201123096 ( 40) ATCAGGCT 1 chr14:61456483-61456563 ( 17) ATCAGGCT 1 chr19:19600140-19600220 ( 35) AACTGGCC 1 chr5:10505818-10505898 ( 54) AACTGGCC 1 chr7:135718345-135718425 ( 73) AGCTGCTC 1 chr11:65264988-65265068 ( 49) AGCCGGTT 1 chr11:34258312-34258392 ( 12) AGCTGCTC 1 chr17:27054416-27054496 ( 15) AGCTGCTC 1 chr19:12476275-12476355 ( 5) AGCCGGTT 1 chr20:5591611-5591691 ( 43) AGCTGCTC 1 chr7:102082203-102082283 ( 17) ATCTGGCG 1 chr3:101249326-101249406 ( 1) ATCTGCAT 1 chr10:65389917-65389997 ( 9) ATCTGGCG 1 chr14:69229878-69229958 ( 71) AGCTGGAG 1 chr1:12043677-12043757 ( 46) AGCTGCCC 1 chr3:123361337-123361417 ( 44) AGCTGGAG 1 chr1:90367899-90367979 ( 16) AGCTGCCC 1 chr1:11741562-11741642 ( 11) AGCTGCCC 1 chr7:1067999-1068079 ( 45) AGCCGGCT 1 chr10:75126746-75126826 ( 38) AGCTGCCC 1 chr12:7394879-7394959 ( 22) AGCTGGAA 1 chr17:27945083-27945163 ( 35) AGCAGCTT 1 chr17:31187280-31187360 ( 49) GTCTGGTT 1 chr9:116303533-116303613 ( 53) GTCTGGTT 1 chr10:73487655-73487735 ( 39) AACAGGCT 1 chr2:122614108-122614188 ( 65) AACTGGTG 1 chr6:44443621-44443701 ( 40) AGCTGGAA 1 chr12:51762646-51762726 ( 24) AGCAGCCT 1 chr15:88214705-88214785 ( 61) AGCTGCTG 1 chr11:67367914-67367994 ( 35) AACTGGCG 1 chr8:141629153-141629233 ( 5) AGCTGCTG 1 chr15:81194802-81194882 ( 31) AGCAGCCT 1 chr4:696618-696698 ( 46) AGCAGCCT 1 chr15:90777241-90777321 ( 53) AGCTGCCG 1 chr4:140099220-140099300 ( 57) TGCTGGCT 1 chr2:145263174-145263254 ( 40) GACTGGTT 1 chr19:39310031-39310111 ( 49) AGCTGCTA 1 chr15:69407136-69407216 ( 48) AGCTGCCG 1 chr2:158731518-158731598 ( 29) AACTGGAC 1 chr6:28521856-28521936 ( 53) AACTGGAC 1 chr19:11877997-11878077 ( 56) GACTGGTT 1 chr7:86562699-86562779 ( 65) GACTGGTT 1 chr7:104583989-104584069 ( 32) TGCTGGCT 1 chr1:169278521-169278601 ( 62) GACTGGTT 1 chr19:49661006-49661086 ( 27) ATCCGGTT 1 chr3:184080672-184080752 ( 10) AACTGGAC 1 chr22:31394464-31394544 ( 56) AACTGGAC 1 chr1:182838533-182838613 ( 21) ATCCGGTT 1 chr1:16380765-16380845 ( 72) AGCTGCAC 1 chr1:22076496-22076576 ( 2) ATCTGCCC 1 chr14:71353498-71353578 ( 12) ATCTGGAG 1 chrX:54834915-54834995 ( 56) ATCCGGCT 1 chr1:16212837-16212917 ( 68) GGCTGCTT 1 chr9:139481749-139481829 ( 64) AGCCGGAT 1 chr10:71217781-71217861 ( 47) GGCTGCCT 1 chr16:88866474-88866554 ( 5) ATCAGCTT 1 chr11:62649147-62649227 ( 30) AACCGGTT 1 chr10:52086751-52086831 ( 62) GGCTGCCT 1 chr10:61469564-61469644 ( 46) AACCGGTT 1 chr2:74531658-74531738 ( 32) GGCTGGTC 1 chr2:61765387-61765467 ( 33) AACCGGTT 1 chr20:37489207-37489287 ( 20) ATCTGGAA 1 chr6:64282193-64282273 ( 30) AACCGGTT 1 chr16:25783237-25783317 ( 16) TTCTGGTT 1 chr6:20575569-20575649 ( 40) ATCTGCTG 1 chr12:125369563-12536964 ( 5) GGCTGGCC 1 chrX:39874282-39874362 ( 64) AACCGGCT 1 chr17:28580558-28580638 ( 56) GGCTGGCC 1 chr17:46103980-46104060 ( 46) AACCGGCT 1 chr17:7589386-7589466 ( 33) AACCGGCT 1 chr4:78079411-78079491 ( 31) GGCTGGCC 1 chr2:127431756-127431836 ( 53) AGCTGCAG 1 chr2:68220631-68220711 ( 41) AGCTGCAG 1 chr3:156178167-156178247 ( 17) ATCTGCTA 1 chr5:55606800-55606880 ( 23) AGCTGCAG 1 chr2:239331068-239331148 ( 27) AGCTGCAG 1 chr10:12105584-12105664 ( 71) AGCTGCAG 1 chr9:132976847-132976927 ( 44) TTCTGGCT 1 chr5:158821164-158821244 ( 49) ATCTGCTA 1 chr12:118558725-11855880 ( 45) AACTGGAA 1 chr1:3691534-3691614 ( 26) GGCAGGCT 1 chr10:29096390-29096470 ( 60) GGCAGGCT 1 chr5:139017467-139017547 ( 58) AGCCGGCC 1 chr12:28343777-28343857 ( 46) ATCTGCAC 1 chr7:100728550-100728630 ( 47) GGCTGGTG 1 chr3:13049158-13049238 ( 41) TGCTGCTT 1 chrX:55041566-55041646 ( 50) TGCTGCTT 1 chr9:37197252-37197332 ( 31) AGCAGCTC 1 chr17:27239536-27239616 ( 25) TGCTGCTT 1 chr1:162342707-162342787 ( 28) AGCAGCTC 1 chr10:105378635-10537871 ( 69) AGCAGCTC 1 chr1:204196593-204196673 ( 24) ATCAGCAT 1 chr13:39573087-39573167 ( 16) GTCTGGCC 1 chr1:90287445-90287525 ( 38) ATCCGCTT 1 chr17:40464463-40464543 ( 28) GGCTGGAC 1 chr5:90675932-90676012 ( 44) AGCAGGAG 1 chr19:38643788-38643868 ( 62) AGCCGGCG 1 chr5:168240770-168240850 ( 13) ATCAGGCA 1 chr10:126738258-12673833 ( 69) AGCAGGAA 1 chr18:46355336-46355416 ( 55) ATCTGCAG 1 chr17:33214008-33214088 ( 13) AGCAGGAA 1 chrX:107801622-107801702 ( 5) ATCAGGCA 1 chr19:14225027-14225107 ( 69) AGCAGGAA 1 chr9:135860341-135860421 ( 41) AGCAGCTG 1 chr12:57915891-57915971 ( 30) GGCCGGTT 1 chr10:13341537-13341617 ( 38) GGCCGGTT 1 chr5:90236505-90236585 ( 29) GGCTGGAG 1 chr11:58541875-58541955 ( 11) AGCTGTCT 1 chr17:33212263-33212343 ( 73) TTCTGCTT 1 chr1:156928257-156928337 ( 70) ATCAGGAG 1 chrX:47676972-47677052 ( 50) AACTGCAA 1 chr20:3890843-3890923 ( 35) ATCAGCCC 1 chr7:104654040-104654120 ( 34) ATCCGGTG 1 chr1:212810206-212810286 ( 15) ATCCGGTG 1 chr8:125539555-125539635 ( 40) GACTGGTG 1 chr17:72711379-72711459 ( 33) ATCAGGAA 1 chr4:40292557-40292637 ( 50) ATCAGCTG 1 chr1:206266192-206266272 ( 64) GGCAGGCC 1 chr1:26087562-26087642 ( 27) TTCAGGTT 1 chr1:162356272-162356352 ( 48) AGCTGTAT 1 chr5:73629976-73630056 ( 50) AACAGGAA 1 chr6:15622057-15622137 ( 28) TTCAGGCT 1 chr19:40951982-40952062 ( 37) TGCCGGTT 1 chr11:57415832-57415912 ( 35) TGCTGGAG 1 chr15:64731393-64731473 ( 36) AACTGTTT 1 chr12:65114779-65114859 ( 63) GGCAGGTG 1 chr22:50098339-50098419 ( 16) TGCTGCCC 1 chr12:124068903-12406898 ( 36) AGCCGCCG 1 chr13:99628371-99628451 ( 9) TTCTGGTA 1 chr5:149879195-149879275 ( 30) GTCAGCCT 1 chr10:103578199-10357827 ( 20) GACCGGCT 1 chr9:135670275-135670355 ( 28) GACCGGCT 1 chrX:153607533-153607613 ( 67) GGCCGGTC 1 chr3:13692193-13692273 ( 52) TGCAGGCC 1 chr19:17622842-17622922 ( 36) GTCTGCAC 1 chr19:39373568-39373648 ( 52) AGCTGTCC 1 chr1:16359480-16359560 ( 49) TGCAGGCC 1 chrX:119468579-119468659 ( 6) TTCTGCTC 1 chr18:3603149-3603229 ( 68) ACCTGGCT 1 chr1:208041664-208041744 ( 26) GGCCGGCC 1 chr3:182655582-182655662 ( 15) ATCAGCAA 1 chr17:31298372-31298452 ( 22) TGCTGCAC 1 chr1:20525617-20525697 ( 26) GGCAGGAG 1 chr11:67116014-67116094 ( 5) TGCAGGTG 1 chr12:4671364-4671444 ( 69) ATCCGCAC 1 chr19:45458224-45458304 ( 22) GGCCGGTA 1 chr8:102049381-102049461 ( 70) GTCAGGCA 1 chr1:234694339-234694419 ( 59) TACCGGCT 1 chr1:161736041-161736121 ( 47) GTCCGCCT 1 chr19:13694073-13694153 ( 11) GTCTGCAA 1 chr21:40357691-40357771 ( 41) ATCTGTCC 1 chr10:14223359-14223439 ( 71) GACAGGCA 1 chr1:101749213-101749293 ( 23) GACAGGCA 1 chr20:32007091-32007171 ( 22) GACAGCCC 1 chr2:113342099-113342179 ( 35) ACCAGGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AKCTGGHT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 6.95619 E= 3.4e-022 164 -1441 -40 -127 -8 -492 89 29 -1441 184 -1441 -1441 -14 -96 -1441 156 -1441 -1441 187 -1441 -1441 10 130 -327 -8 57 -1441 75 -96 -22 -81 113 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AKCTGGHT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 217 E= 3.4e-022 0.700461 0.000000 0.207373 0.092166 0.211982 0.009217 0.506912 0.271889 0.000000 1.000000 0.000000 0.000000 0.202765 0.142857 0.000000 0.654378 0.000000 0.000000 1.000000 0.000000 0.000000 0.299539 0.677419 0.023041 0.211982 0.414747 0.000000 0.373272 0.115207 0.239631 0.156682 0.488479 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AKCTGGHT MEME-2 regular expression -------------------------------------------------------------------------------- [AG][GTA]C[TA]G[GC][CTA][TC] -------------------------------------------------------------------------------- Time 8.79 secs. ******************************************************************************** ******************************************************************************** MOTIF TTATCWCT MEME-3 width = 8 sites = 20 llr = 193 E-value = 1.6e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTATCWCT MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::a::4:2 pos.-specific C ::::a:7: probability G ::::::2: matrix T aa:a:728 bits 2.2 **** 2.0 ***** 1.7 ***** 1.5 ***** * Relative 1.3 ****** * Entropy 1.1 ****** * (13.9 bits) 0.9 ****** * 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTATCTCT consensus A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTATCWCT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:118156050-118156130 4 9.62e-06 GCG TTATCTCT CCACCCACAC chr5:139017467-139017547 44 9.62e-06 GAGGCGCCGG TTATCTCT GGCCCCAGCC chr9:37197252-37197332 39 9.62e-06 GAAGCAGCTC TTATCTCT CCAGACCTGA chr8:141629153-141629233 41 9.62e-06 AGCCGCGGCC TTATCTCT GTGATGCAGA chr15:69407136-69407216 36 9.62e-06 AGATCACCCA TTATCTCT CCAGAGCTGC chr6:27805244-27805324 58 9.62e-06 cttgctcaca ttatctct tttgtttcgg chr22:50098339-50098419 6 9.62e-06 CTTGA TTATCTCT GCTGCTGCCC chr2:68220631-68220711 55 1.93e-05 GCAGTAACAC TTATCACT AGTTATCACA chr2:145263174-145263254 69 1.93e-05 GTCTCTGCAT TTATCACT CTGT chr1:206266192-206266272 37 1.93e-05 cctctttttc ttatcact gttacccata chr3:182655582-182655662 72 3.66e-05 ttgtcactgt ttatcttt c chr10:126738258-12673833 55 3.66e-05 TCCGGAGAGA TTATCTCA AAAACAAGCA chr1:87645980-87646060 38 3.66e-05 AGTCCTGTGA TTATCTCA ACCTCCAGCT chr19:39373568-39373648 60 3.66e-05 gcagctgtcc ttatctca cagggacacc chr7:86562699-86562779 5 3.66e-05 ctgc ttatcttt aagaaacagg chr1:169278521-169278601 2 3.66e-05 c ttatcttt aagaaacagg chrX:119468579-119468659 48 6.35e-05 aaagctctcc ttatcaca gggatcagac chr2:127431756-127431836 44 7.30e-05 ACTGAGCCTC TTATCAGT CAGCTGCAGG chr12:109249782-10924986 23 7.30e-05 CTCCCCCGTG TTATCAGT CAACTTCCCC chr17:33214008-33214088 69 7.30e-05 TGTAAAGCTT TTATCAGT ATTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTATCWCT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:118156050-118156130 9.6e-06 3_[+3]_69 chr5:139017467-139017547 9.6e-06 43_[+3]_29 chr9:37197252-37197332 9.6e-06 38_[+3]_34 chr8:141629153-141629233 9.6e-06 40_[+3]_32 chr15:69407136-69407216 9.6e-06 35_[+3]_37 chr6:27805244-27805324 9.6e-06 57_[+3]_15 chr22:50098339-50098419 9.6e-06 5_[+3]_67 chr2:68220631-68220711 1.9e-05 54_[+3]_18 chr2:145263174-145263254 1.9e-05 68_[+3]_4 chr1:206266192-206266272 1.9e-05 36_[+3]_36 chr3:182655582-182655662 3.7e-05 71_[+3]_1 chr10:126738258-12673833 3.7e-05 54_[+3]_18 chr1:87645980-87646060 3.7e-05 37_[+3]_35 chr19:39373568-39373648 3.7e-05 59_[+3]_13 chr7:86562699-86562779 3.7e-05 4_[+3]_68 chr1:169278521-169278601 3.7e-05 1_[+3]_71 chrX:119468579-119468659 6.3e-05 47_[+3]_25 chr2:127431756-127431836 7.3e-05 43_[+3]_29 chr12:109249782-10924986 7.3e-05 22_[+3]_50 chr17:33214008-33214088 7.3e-05 68_[+3]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTATCWCT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTATCWCT width=8 seqs=20 chr1:118156050-118156130 ( 4) TTATCTCT 1 chr5:139017467-139017547 ( 44) TTATCTCT 1 chr9:37197252-37197332 ( 39) TTATCTCT 1 chr8:141629153-141629233 ( 41) TTATCTCT 1 chr15:69407136-69407216 ( 36) TTATCTCT 1 chr6:27805244-27805324 ( 58) TTATCTCT 1 chr22:50098339-50098419 ( 6) TTATCTCT 1 chr2:68220631-68220711 ( 55) TTATCACT 1 chr2:145263174-145263254 ( 69) TTATCACT 1 chr1:206266192-206266272 ( 37) TTATCACT 1 chr3:182655582-182655662 ( 72) TTATCTTT 1 chr10:126738258-12673833 ( 55) TTATCTCA 1 chr1:87645980-87646060 ( 38) TTATCTCA 1 chr19:39373568-39373648 ( 60) TTATCTCA 1 chr7:86562699-86562779 ( 5) TTATCTTT 1 chr1:169278521-169278601 ( 2) TTATCTTT 1 chrX:119468579-119468659 ( 48) TTATCACA 1 chr2:127431756-127431836 ( 44) TTATCAGT 1 chr12:109249782-10924986 ( 23) TTATCAGT 1 chr17:33214008-33214088 ( 69) TTATCAGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTATCWCT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.7763 E= 1.6e-003 -1097 -1097 -1097 217 -1097 -1097 -1097 217 216 -1097 -1097 -1097 -1097 -1097 -1097 217 -1097 184 -1097 -1097 64 -1097 -1097 155 -1097 133 -87 -57 -16 -1097 -1097 184 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTATCWCT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 1.6e-003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.350000 0.000000 0.000000 0.650000 0.000000 0.700000 0.150000 0.150000 0.200000 0.000000 0.000000 0.800000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTATCWCT MEME-3 regular expression -------------------------------------------------------------------------------- TTATC[TA]C[TA] -------------------------------------------------------------------------------- Time 12.13 secs. ******************************************************************************** ******************************************************************************** MOTIF CCAGTTTG MEME-4 width = 8 sites = 16 llr = 163 E-value = 3.8e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCAGTTTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::9::::: pos.-specific C aa:::::3 probability G :::a:::8 matrix T ::1:aaa: bits 2.2 *** 2.0 ** **** 1.7 ** **** 1.5 ******* Relative 1.3 ******* Entropy 1.1 ******** (14.7 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCAGTTTG consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGTTTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr5:90236505-90236585 41 1.45e-05 CTGGAGCCAG CCAGTTTG AACCGGCACT chr1:31981148-31981228 9 1.45e-05 GGTTTGGG CCAGTTTG AGCTGGTTTT chr5:42583571-42583651 42 1.45e-05 AGGAAAGTGA CCAGTTTG AGCTGGCCAG chr22:20766996-20767076 46 1.45e-05 gtggtctcaa ccagtttg aactggacag chr17:31187280-31187360 41 1.45e-05 tctgtttaag ccagtttg gtctggtttt chr14:106069324-10606940 20 1.45e-05 ctcagcTGAA CCAGTTTG ACCCAGTCTA chr9:130805785-130805865 24 1.45e-05 TCCCCAGTTC CCAGTTTG CACTGGTGGT chr1:16212837-16212917 56 1.45e-05 CTGGAACCAT CCAGTTTG AGTTGGCTGC chr22:31394464-31394544 48 1.45e-05 gtggtctcaa ccagtttg aactggacag chr10:75126746-75126826 19 1.45e-05 gtggtcacaa ccagtttg aacaggagag chr14:23630329-23630409 33 2.93e-05 GGCAGGCAAG CCAGTTTC AGCAGGTTCT chr10:71217781-71217861 59 2.93e-05 ctgcctgact ccAGTTTC TTCCTCGGGC chr12:14410633-14410713 44 2.93e-05 GCGGTTTGAG CCAGTTTC TGAGCTGGAT chr1:90367899-90367979 28 2.93e-05 CTGCCCCAAA CCAGTTTC TCCCAGACTC chr9:129719827-129719907 1 4.38e-05 . CCTGTTTG AACTGATCTG chr4:78079411-78079491 4 4.38e-05 TTT CCTGTTTG TGAAACGCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGTTTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:90236505-90236585 1.5e-05 40_[+4]_32 chr1:31981148-31981228 1.5e-05 8_[+4]_64 chr5:42583571-42583651 1.5e-05 41_[+4]_31 chr22:20766996-20767076 1.5e-05 45_[+4]_27 chr17:31187280-31187360 1.5e-05 40_[+4]_32 chr14:106069324-10606940 1.5e-05 19_[+4]_53 chr9:130805785-130805865 1.5e-05 23_[+4]_49 chr1:16212837-16212917 1.5e-05 55_[+4]_17 chr22:31394464-31394544 1.5e-05 47_[+4]_25 chr10:75126746-75126826 1.5e-05 18_[+4]_54 chr14:23630329-23630409 2.9e-05 32_[+4]_40 chr10:71217781-71217861 2.9e-05 58_[+4]_14 chr12:14410633-14410713 2.9e-05 43_[+4]_29 chr1:90367899-90367979 2.9e-05 27_[+4]_45 chr9:129719827-129719907 4.4e-05 [+4]_72 chr4:78079411-78079491 4.4e-05 3_[+4]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGTTTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCAGTTTG width=8 seqs=16 chr5:90236505-90236585 ( 41) CCAGTTTG 1 chr1:31981148-31981228 ( 9) CCAGTTTG 1 chr5:42583571-42583651 ( 42) CCAGTTTG 1 chr22:20766996-20767076 ( 46) CCAGTTTG 1 chr17:31187280-31187360 ( 41) CCAGTTTG 1 chr14:106069324-10606940 ( 20) CCAGTTTG 1 chr9:130805785-130805865 ( 24) CCAGTTTG 1 chr1:16212837-16212917 ( 56) CCAGTTTG 1 chr22:31394464-31394544 ( 48) CCAGTTTG 1 chr10:75126746-75126826 ( 19) CCAGTTTG 1 chr14:23630329-23630409 ( 33) CCAGTTTC 1 chr10:71217781-71217861 ( 59) CCAGTTTC 1 chr12:14410633-14410713 ( 44) CCAGTTTC 1 chr1:90367899-90367979 ( 28) CCAGTTTC 1 chr9:129719827-129719907 ( 1) CCTGTTTG 1 chr4:78079411-78079491 ( 4) CCTGTTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGTTTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8918 E= 3.8e-004 -1064 184 -1064 -1064 -1064 184 -1064 -1064 196 -1064 -1064 -83 -1064 -1064 186 -1064 -1064 -1064 -1064 217 -1064 -1064 -1064 217 -1064 -1064 -1064 217 -1064 -16 145 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGTTTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 3.8e-004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.875000 0.000000 0.000000 0.125000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.750000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGTTTG MEME-4 regular expression -------------------------------------------------------------------------------- CCAGTTT[GC] -------------------------------------------------------------------------------- Time 15.45 secs. ******************************************************************************** ******************************************************************************** MOTIF TYCTTATC MEME-5 width = 8 sites = 13 llr = 128 E-value = 3.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TYCTTATC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::8:: pos.-specific C :58::::a probability G :::::::: matrix T a52aa2a: bits 2.2 * ** * 2.0 * ** ** 1.7 * ** ** 1.5 * ***** Relative 1.3 * ***** Entropy 1.1 ******** (14.2 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCCTTATC consensus TT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYCTTATC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:150010546-150010626 63 9.62e-06 ttgtaaatgt ttcttatc agacttaagg chr11:58541875-58541955 61 9.62e-06 tgtctgcact ttcttatc agacaatggc chr19:38643788-38643868 3 2.16e-05 GA TCCTTATC CGTCCAGACA chr5:133268496-133268576 63 2.16e-05 ccagacaacc tccttatc cgggagacca chr1:101749213-101749293 12 2.16e-05 CTCTGGTTCT TCCTTATC CATGACAGGC chr19:39310031-39310111 70 2.16e-05 tataattagg tccttatc tgc chr8:141629153-141629233 15 2.16e-05 AGCTGCTGGC TCCTTATC CTGGTGGCAG chr17:31298372-31298452 44 2.16e-05 gctgggaagg tccttatc aagtgctcct chr1:20525617-20525697 41 2.93e-05 GAGATAGTCC TTTTTATC TACAATAAAC chr16:25783237-25783317 8 2.93e-05 TTACCTC TTTTTATC TTCTGGTTCC chr13:39573087-39573167 37 2.93e-05 acatgtgcta tttttatc accctttgtg chr17:31187280-31187360 25 4.85e-05 gataacatgt ttcttttc tgtttaagcc chr1:15110668-15110748 71 6.05e-05 taggacagac tccttttc ct -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYCTTATC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:150010546-150010626 9.6e-06 62_[+5]_10 chr11:58541875-58541955 9.6e-06 60_[+5]_12 chr19:38643788-38643868 2.2e-05 2_[+5]_70 chr5:133268496-133268576 2.2e-05 62_[+5]_10 chr1:101749213-101749293 2.2e-05 11_[+5]_61 chr19:39310031-39310111 2.2e-05 69_[+5]_3 chr8:141629153-141629233 2.2e-05 14_[+5]_58 chr17:31298372-31298452 2.2e-05 43_[+5]_29 chr1:20525617-20525697 2.9e-05 40_[+5]_32 chr16:25783237-25783317 2.9e-05 7_[+5]_65 chr13:39573087-39573167 2.9e-05 36_[+5]_36 chr17:31187280-31187360 4.9e-05 24_[+5]_48 chr1:15110668-15110748 6e-05 70_[+5]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYCTTATC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TYCTTATC width=8 seqs=13 chr7:150010546-150010626 ( 63) TTCTTATC 1 chr11:58541875-58541955 ( 61) TTCTTATC 1 chr19:38643788-38643868 ( 3) TCCTTATC 1 chr5:133268496-133268576 ( 63) TCCTTATC 1 chr1:101749213-101749293 ( 12) TCCTTATC 1 chr19:39310031-39310111 ( 70) TCCTTATC 1 chr8:141629153-141629233 ( 15) TCCTTATC 1 chr17:31298372-31298452 ( 44) TCCTTATC 1 chr1:20525617-20525697 ( 41) TTTTTATC 1 chr16:25783237-25783317 ( 8) TTTTTATC 1 chr13:39573087-39573167 ( 37) TTTTTATC 1 chr17:31187280-31187360 ( 25) TTCTTTTC 1 chr1:15110668-15110748 ( 71) TCCTTTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYCTTATC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.0849 E= 3.5e+002 -1035 -1035 -1035 217 -1035 95 -1035 105 -1035 146 -1035 5 -1035 -1035 -1035 217 -1035 -1035 -1035 217 192 -1035 -1035 -53 -1035 -1035 -1035 217 -1035 184 -1035 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYCTTATC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 3.5e+002 0.000000 0.000000 0.000000 1.000000 0.000000 0.538462 0.000000 0.461538 0.000000 0.769231 0.000000 0.230769 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.846154 0.000000 0.000000 0.153846 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYCTTATC MEME-5 regular expression -------------------------------------------------------------------------------- T[CT][CT]TTATC -------------------------------------------------------------------------------- Time 18.74 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:40951982-40952062 2.55e-01 80 chr11:111797927-11179800 7.21e-01 80 chr15:67253805-67253885 2.78e-02 80 chr21:40580956-40581036 4.14e-05 12_[+1(3.28e-05)]_13_[+2(8.42e-05)]_\ 39 chr1:182838533-182838613 5.02e-04 48_[+3(9.02e-05)]_24 chr9:139481749-139481829 4.00e-01 80 chr7:129781480-129781560 6.31e-02 33_[+2(4.37e-05)]_39 chr4:78079411-78079491 3.00e-02 3_[+4(4.38e-05)]_69 chr17:7589386-7589466 7.51e-01 80 chr5:90677675-90677755 3.46e-01 80 chr10:75126746-75126826 9.31e-03 18_[+4(1.45e-05)]_54 chr8:125539555-125539635 5.21e-01 80 chr19:45793869-45793949 1.07e-02 80 chr20:62152451-62152531 1.24e-01 80 chr6:44443621-44443701 1.95e-01 80 chr22:31394464-31394544 2.03e-02 47_[+4(1.45e-05)]_25 chr7:1067999-1068079 5.54e-01 80 chr2:10588486-10588566 9.84e-01 80 chr6:64282193-64282273 7.58e-01 80 chrX:48568088-48568168 2.79e-03 4_[+4(8.21e-05)]_68 chr14:106069833-10606991 1.84e-01 30_[+4(8.21e-05)]_42 chr7:24852060-24852140 6.25e-01 80 chr2:122614108-122614188 2.08e-02 46_[+1(2.12e-05)]_26 chr1:16212837-16212917 1.05e-02 55_[+4(1.45e-05)]_17 chr2:96890971-96891051 6.21e-04 80 chr3:184080672-184080752 8.17e-01 80 chr1:11741562-11741642 7.09e-01 80 chr10:73487655-73487735 7.52e-02 80 chr1:208041664-208041744 4.23e-02 80 chr9:116303533-116303613 7.29e-02 80 chr1:37945337-37945417 7.64e-02 13_[+2(4.37e-05)]_59 chr16:19019739-19019819 1.08e-01 26_[+2(3.21e-05)]_46 chr1:90367899-90367979 2.62e-04 27_[+4(2.93e-05)]_45 chr12:118558725-11855880 3.12e-01 80 chr7:100728550-100728630 3.97e-01 80 chr10:13341537-13341617 8.60e-01 80 chr20:37489207-37489287 4.84e-01 80 chr9:130805785-130805865 6.73e-04 23_[+4(1.45e-05)]_10_[+2(1.43e-05)]_\ 31 chr20:5591611-5591691 1.78e-01 80 chr19:46524828-46524908 1.58e-01 80 chr5:78389681-78389761 1.49e-02 80 chr2:175468121-175468201 7.25e-02 80 chr17:8042309-8042389 1.81e-01 80 chr2:61765387-61765467 4.83e-01 80 chr14:106069324-10606940 8.38e-02 19_[+4(1.45e-05)]_53 chr9:135670275-135670355 2.52e-01 80 chr19:49661006-49661086 7.77e-02 80 chr2:74531658-74531738 5.64e-01 80 chr4:696618-696698 2.22e-01 80 chr17:31187280-31187360 2.25e-06 24_[+5(4.85e-05)]_8_[+4(1.45e-05)]_\ 32 chr1:169278521-169278601 1.15e-03 1_[+3(3.66e-05)]_71 chr16:55469411-55469491 4.61e-03 65_[+1(3.28e-05)]_7 chr17:42467234-42467314 1.68e-02 29_[+2(7.25e-05)]_43 chr6:133133606-133133686 2.32e-03 39_[+2(1.43e-05)]_33 chr12:113860165-11386024 8.09e-02 48_[+2(1.43e-05)]_24 chr22:20766996-20767076 8.19e-03 45_[+4(1.45e-05)]_27 chr19:12476275-12476355 3.04e-01 80 chr19:18385854-18385934 1.03e-01 15_[+2(3.21e-05)]_57 chr5:42583571-42583651 2.04e-03 41_[+4(1.45e-05)]_31 chrX:54834915-54834995 6.16e-01 80 chr5:90675932-90676012 7.20e-01 80 chr20:49407351-49407431 5.43e-02 28_[+2(1.43e-05)]_2_[+2(8.42e-05)]_\ 34 chr10:103578199-10357827 8.76e-01 80 chr12:28343777-28343857 5.56e-01 80 chr13:99628371-99628451 1.91e-01 80 chr7:132174731-132174811 6.52e-01 80 chr17:40464463-40464543 8.40e-01 80 chr17:27945083-27945163 4.14e-01 80 chr10:61469564-61469644 4.26e-03 80 chr7:104583989-104584069 6.68e-02 80 chr7:86562699-86562779 7.53e-05 4_[+3(3.66e-05)]_68 chr6:15622057-15622137 3.90e-01 80 chr5:158821164-158821244 2.27e-03 43_[+5(2.16e-05)]_29 chr17:46103980-46104060 6.35e-01 80 chr3:123361337-123361417 3.74e-01 80 chr12:124068903-12406898 4.12e-01 80 chr19:14225027-14225107 5.90e-01 80 chr17:28580558-28580638 2.11e-01 80 chr1:151512293-151512373 7.52e-02 80 chrX:153607533-153607613 6.99e-01 80 chrX:39874282-39874362 6.53e-01 80 chr10:86014653-86014733 1.66e-02 80 chr11:60621833-60621913 9.71e-02 3_[+1(2.12e-05)]_69 chr17:27054416-27054496 6.19e-01 80 chr9:129719827-129719907 2.81e-04 [+4(4.38e-05)]_29_[+2(1.43e-05)]_35 chrX:107801622-107801702 2.78e-02 29_[+1(5.41e-05)]_43 chr16:23690017-23690097 3.68e-01 80 chr1:161736041-161736121 1.91e-01 80 chr11:34258312-34258392 3.14e-02 80 chr22:50098339-50098419 5.47e-05 5_[+3(9.62e-06)]_45_[+1(1.18e-05)]_\ 14 chr19:11877997-11878077 6.23e-01 80 chr15:81194802-81194882 9.49e-04 67_[+1(1.18e-05)]_5 chr5:36242374-36242454 1.27e-01 27_[+2(7.25e-05)]_45 chr6:28521856-28521936 6.59e-02 19_[+4(8.21e-05)]_53 chr2:158731518-158731598 3.03e-01 80 chr5:73629976-73630056 6.95e-02 60_[+1(7.12e-05)]_12 chr12:14410633-14410713 1.50e-03 43_[+4(2.93e-05)]_2_[+2(7.25e-05)]_\ 19 chr1:68577603-68577683 1.98e-03 80 chr1:206274326-206274406 2.01e-02 80 chr7:73779866-73779946 5.28e-01 80 chr12:125369563-12536964 7.23e-03 80 chrX:152952282-152952362 4.13e-02 30_[+2(7.25e-05)]_42 chrX:55054610-55054690 4.81e-02 21_[+1(5.41e-05)]_51 chr12:4671364-4671444 9.71e-01 80 chr21:40357691-40357771 8.01e-01 80 chr22:22146151-22146231 3.57e-01 70_[+1(7.12e-05)]_2 chr1:212810206-212810286 6.50e-02 80 chr6:27805244-27805324 2.09e-04 11_[+2(8.42e-05)]_38_[+3(9.62e-06)]_\ 15 chr1:26087562-26087642 2.18e-03 80 chr14:71353498-71353578 2.61e-04 6_[+5(9.62e-06)]_66 chr20:42639095-42639175 8.52e-02 51_[+1(1.18e-05)]_21 chr10:105378635-10537871 1.44e-01 80 chr11:65264988-65265068 4.88e-01 80 chr2:178504424-178504504 3.54e-04 25_[+2(7.25e-05)]_47 chr10:80787322-80787402 8.32e-03 80 chr15:69407136-69407216 5.78e-04 35_[+3(9.62e-06)]_37 chr1:12043677-12043757 1.44e-01 80 chr14:69229878-69229958 1.28e-01 80 chr17:41481347-41481427 2.24e-01 80 chr6:47210292-47210372 3.51e-02 46_[+2(3.21e-05)]_26 chr5:149879195-149879275 2.18e-02 63_[+1(2.12e-05)]_9 chr12:65114779-65114859 1.94e-01 80 chr1:31981148-31981228 2.29e-05 8_[+4(1.45e-05)]_[+2(1.43e-05)]_2_\ [+2(4.37e-05)]_46 chr1:22076496-22076576 2.49e-02 80 chr11:44341390-44341470 8.39e-01 80 chr2:113342099-113342179 5.97e-01 80 chr10:65389917-65389997 6.39e-01 80 chr1:234694339-234694419 8.81e-01 80 chr10:52086751-52086831 1.37e-01 80 chr1:90287445-90287525 3.25e-01 80 chr18:3603149-3603229 1.50e-02 36_[+1(5.41e-05)]_36 chr8:102049381-102049461 3.28e-02 17_[+1(3.28e-05)]_55 chr11:62649147-62649227 9.97e-02 80 chr20:39890786-39890866 7.54e-03 80 chrX:119468579-119468659 2.08e-05 16_[+1(5.41e-05)]_20_[+5(2.16e-05)]_\ 28 chr17:31298372-31298452 3.45e-02 43_[+5(2.16e-05)]_29 chr16:71464773-71464853 6.65e-02 80 chr3:101249326-101249406 2.76e-02 80 chr5:111885584-111885664 5.22e-01 80 chr1:16359480-16359560 9.00e-01 80 chr13:39573087-39573167 3.25e-03 36_[+5(2.93e-05)]_36 chr1:204196593-204196673 7.26e-02 80 chr7:135718345-135718425 5.16e-03 62_[+1(2.12e-05)]_10 chr17:33212263-33212343 1.15e-01 80 chr7:104654040-104654120 2.48e-01 80 chr9:132976847-132976927 2.29e-01 80 chr7:102082203-102082283 4.11e-02 80 chr12:48171639-48171719 4.53e-04 46_[+5(9.92e-05)]_26 chr7:765372-765452 1.31e-01 80 chr12:8845364-8845444 3.90e-01 80 chr1:162342707-162342787 2.51e-02 16_[+1(5.41e-05)]_21_[+1(1.18e-05)]_\ 27 chr17:33214008-33214088 3.27e-03 68_[+3(7.30e-05)]_4 chr11:58541875-58541955 2.33e-04 60_[+5(9.62e-06)]_12 chr16:88866474-88866554 1.59e-02 80 chr18:46355336-46355416 5.17e-01 80 chr21:39848475-39848555 3.47e-02 80 chr1:230341582-230341662 8.32e-02 80 chr16:30786796-30786876 9.39e-02 80 chr17:40903147-40903227 7.21e-04 42_[+4(5.85e-05)]_30 chr19:39373568-39373648 1.06e-03 56_[+5(2.16e-05)]_16 chr17:72329104-72329184 2.12e-01 56_[+1(7.12e-05)]_16 chr22:41999965-42000045 1.72e-03 80 chr10:71217781-71217861 2.54e-02 58_[+4(2.93e-05)]_14 chr10:12105584-12105664 7.18e-02 80 chr5:90236505-90236585 1.27e-02 40_[+4(1.45e-05)]_32 chr5:10505818-10505898 1.59e-03 80 chr6:4985115-4985195 3.79e-02 80 chr8:141629153-141629233 1.21e-04 14_[+5(2.16e-05)]_18_[+3(9.62e-06)]_\ 32 chr19:13694073-13694153 7.42e-02 80 chr3:193973982-193974062 9.88e-03 80 chr19:19600140-19600220 5.19e-02 80 chr20:3890843-3890923 5.00e-02 80 chr1:87645980-87646060 1.64e-03 37_[+3(3.66e-05)]_35 chr11:67367914-67367994 3.49e-01 80 chr1:206266192-206266272 1.48e-05 28_[+5(7.77e-05)]_[+3(1.93e-05)]_36 chr7:66005025-66005105 1.12e-03 25_[+1(2.12e-05)]_47 chr12:109249782-10924986 7.24e-02 22_[+3(7.30e-05)]_50 chr15:88214705-88214785 5.53e-03 80 chrX:47676972-47677052 1.14e-03 17_[+1(1.18e-05)]_13_[+1(1.18e-05)]_\ 34 chr2:239331068-239331148 1.00e-01 43_[+1(9.21e-05)]_29 chr5:177844512-177844592 1.92e-01 80 chr22:40586644-40586724 5.83e-03 56_[+2(1.43e-05)]_16 chr17:27239536-27239616 5.27e-01 80 chr19:39310031-39310111 4.77e-03 69_[+5(2.16e-05)]_3 chr14:61456483-61456563 2.80e-02 80 chr9:37197252-37197332 1.62e-03 38_[+3(9.62e-06)]_34 chr12:57915891-57915971 6.82e-01 80 chr2:145263174-145263254 4.83e-03 68_[+3(1.93e-05)]_4 chr19:45458224-45458304 8.99e-01 80 chr1:16380765-16380845 1.86e-01 80 chr5:55606800-55606880 8.22e-02 80 chr1:151138477-151138557 6.95e-01 80 chr1:101749213-101749293 2.95e-03 11_[+5(2.16e-05)]_61 chr17:27068639-27068719 1.34e-02 58_[+1(5.41e-05)]_14 chr6:34530769-34530849 5.22e-02 67_[+1(1.18e-05)]_5 chr19:17622842-17622922 7.82e-01 80 chr11:67116014-67116094 5.31e-01 80 chr3:156178167-156178247 2.07e-01 80 chr3:13692193-13692273 9.74e-01 80 chr7:44120935-44121015 2.59e-01 80 chr12:51762646-51762726 4.21e-01 80 chr15:64731393-64731473 3.42e-03 41_[+3(6.35e-05)]_31 chr11:57415832-57415912 1.29e-01 80 chr6:20575569-20575649 5.64e-04 67_[+1(9.21e-05)]_5 chr1:120279970-120280050 6.14e-03 31_[+1(2.12e-05)]_41 chr9:33240041-33240121 1.16e-03 70_[+1(2.12e-05)]_2 chr10:126738258-12673833 7.83e-04 2_[+1(3.28e-05)]_44_[+3(3.66e-05)]_\ 18 chr2:68220631-68220711 8.62e-03 54_[+3(1.93e-05)]_2_[+3(6.35e-05)]_\ 8 chr19:14474536-14474616 9.70e-01 80 chr4:40292557-40292637 5.59e-01 80 chr5:139017467-139017547 3.96e-03 43_[+3(9.62e-06)]_29 chr1:202045343-202045423 1.66e-03 31_[+1(2.12e-05)]_41 chr3:182655582-182655662 5.12e-03 71_[+3(3.66e-05)]_1 chr1:207020994-207021074 9.45e-03 43_[+1(5.41e-05)]_29 chr17:73781181-73781261 5.24e-01 80 chr5:133268496-133268576 1.75e-02 62_[+5(2.16e-05)]_10 chr19:1836910-1836990 6.26e-03 49_[+1(2.12e-05)]_23 chr10:127293936-12729401 5.19e-01 80 chr5:168240770-168240850 8.60e-03 51_[+1(9.21e-05)]_21 chr1:201123016-201123096 1.47e-04 19_[+1(2.12e-05)]_7_[+5(9.92e-05)]_\ 38 chr20:32007091-32007171 7.35e-01 80 chr17:72711379-72711459 4.54e-01 80 chr13:38533672-38533752 6.99e-03 80 chr12:7394879-7394959 9.93e-02 80 chr4:79542721-79542801 9.49e-01 80 chr10:29096390-29096470 1.40e-03 68_[+1(3.28e-05)]_4 chr14:23630329-23630409 1.95e-03 32_[+4(2.93e-05)]_40 chr7:150010546-150010626 2.06e-05 62_[+5(9.62e-06)]_10 chrX:55041566-55041646 1.39e-02 80 chr2:20624664-20624744 1.57e-02 80 chr10:14223359-14223439 1.13e-02 49_[+1(1.18e-05)]_23 chr3:13049158-13049238 2.07e-02 80 chr4:140099220-140099300 5.63e-01 80 chr1:213779235-213779315 2.34e-01 45_[+1(7.12e-05)]_27 chr15:90777241-90777321 4.81e-01 80 chr2:127431756-127431836 1.65e-04 4_[+1(5.41e-05)]_31_[+3(7.30e-05)]_\ 29 chr16:25783237-25783317 2.47e-04 7_[+5(2.93e-05)]_65 chr1:156928257-156928337 2.45e-01 80 chr11:8228055-8228135 3.22e-02 6_[+1(5.41e-05)]_66 chr1:3691534-3691614 4.26e-02 80 chr1:118156050-118156130 5.43e-03 3_[+3(9.62e-06)]_69 chr9:135860341-135860421 7.05e-02 80 chr19:38643788-38643868 1.97e-04 2_[+5(2.16e-05)]_38_[+1(5.41e-05)]_\ 24 chr1:15110668-15110748 1.12e-03 29_[+2(8.42e-05)]_33_[+5(6.05e-05)]_\ 2 chr1:162356272-162356352 1.70e-01 80 chr15:62386779-62386859 3.92e-01 80 chr16:58299517-58299597 3.58e-01 80 chr9:100987554-100987634 2.91e-01 80 chr1:20525617-20525697 1.01e-02 40_[+5(2.93e-05)]_32 chr15:101647956-10164803 2.83e-02 60_[+2(4.37e-05)]_12 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n05.farnam.hpc.yale.internal ********************************************************************************