******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/KLF13.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr5:122335786-122335866 1.0000 80 chr2:86070817-86070897 1.0000 80 chr7:29961149-29961229 1.0000 80 chr1:22968611-22968691 1.0000 80 chr1:153590202-153590282 1.0000 80 chr16:58028862-58028942 1.0000 80 chr17:45078610-45078690 1.0000 80 chr10:81818673-81818753 1.0000 80 chr6:41418968-41419048 1.0000 80 chr16:28847922-28848002 1.0000 80 chr2:69664115-69664195 1.0000 80 chr12:68617087-68617167 1.0000 80 chr8:130709515-130709595 1.0000 80 chr19:54694806-54694886 1.0000 80 chr17:34274288-34274368 1.0000 80 chr12:679099-679179 1.0000 80 chr21:37814153-37814233 1.0000 80 chr15:85524084-85524164 1.0000 80 chr5:36241053-36241133 1.0000 80 chr6:43742631-43742711 1.0000 80 chr11:65812710-65812790 1.0000 80 chr5:157170601-157170681 1.0000 80 chr7:1215908-1215988 1.0000 80 chr1:154946217-154946297 1.0000 80 chr2:231577463-231577543 1.0000 80 chr10:52420102-52420182 1.0000 80 chr3:47913027-47913107 1.0000 80 chr19:1248245-1248325 1.0000 80 chr12:49725432-49725512 1.0000 80 chr9:123631520-123631600 1.0000 80 chr11:9594679-9594759 1.0000 80 chr22:27068619-27068699 1.0000 80 chr7:73981180-73981260 1.0000 80 chr22:19946850-19946930 1.0000 80 chr20:37274922-37275002 1.0000 80 chr11:123940206-12394028 1.0000 80 chr17:35715508-35715588 1.0000 80 chr6:1515765-1515845 1.0000 80 chr8:128908122-128908202 1.0000 80 chr17:76908932-76909012 1.0000 80 chr12:132845428-13284550 1.0000 80 chr22:19619800-19619880 1.0000 80 chr1:242161942-242162022 1.0000 80 chr6:69282627-69282707 1.0000 80 chr9:136019994-136020074 1.0000 80 chr8:127889027-127889107 1.0000 80 chr1:17727576-17727656 1.0000 80 chr12:48153277-48153357 1.0000 80 chr10:102106306-10210638 1.0000 80 chr20:18568563-18568643 1.0000 80 chrX:128741092-128741172 1.0000 80 chr7:75272309-75272389 1.0000 80 chr5:133862583-133862663 1.0000 80 chr2:38830638-38830718 1.0000 80 chr19:3022899-3022979 1.0000 80 chr21:47744666-47744746 1.0000 80 chr17:62359470-62359550 1.0000 80 chr3:194354389-194354469 1.0000 80 chr7:65580470-65580550 1.0000 80 chr4:75409182-75409262 1.0000 80 chr12:52417595-52417675 1.0000 80 chr17:49336690-49336770 1.0000 80 chr10:73444267-73444347 1.0000 80 chr7:138917044-138917124 1.0000 80 chr2:121310687-121310767 1.0000 80 chr12:110869479-11086955 1.0000 80 chr5:142782158-142782238 1.0000 80 chr7:75933043-75933123 1.0000 80 chr13:45694516-45694596 1.0000 80 chr16:2053980-2054060 1.0000 80 chr7:1209571-1209651 1.0000 80 chr16:30570114-30570194 1.0000 80 chr17:58217311-58217391 1.0000 80 chr11:63606206-63606286 1.0000 80 chr2:8992459-8992539 1.0000 80 chr5:179517583-179517663 1.0000 80 chr22:32058164-32058244 1.0000 80 chr3:48229868-48229948 1.0000 80 chr6:13487068-13487148 1.0000 80 chr14:90421011-90421091 1.0000 80 chr1:207818391-207818471 1.0000 80 chr3:193561079-193561159 1.0000 80 chr19:8577039-8577119 1.0000 80 chr11:71934335-71934415 1.0000 80 chr19:1864244-1864324 1.0000 80 chr7:130353652-130353732 1.0000 80 chr7:75932843-75932923 1.0000 80 chr9:35605078-35605158 1.0000 80 chr1:154733029-154733109 1.0000 80 chr1:71513470-71513550 1.0000 80 chr6:27181004-27181084 1.0000 80 chr12:104609466-10460954 1.0000 80 chr15:76440406-76440486 1.0000 80 chr3:47822920-47823000 1.0000 80 chr15:44580970-44581050 1.0000 80 chr19:11590431-11590511 1.0000 80 chr10:43697789-43697869 1.0000 80 chr10:88720267-88720347 1.0000 80 chr12:76478760-76478840 1.0000 80 chr1:41826826-41826906 1.0000 80 chr19:56135997-56136077 1.0000 80 chr6:105307307-105307387 1.0000 80 chr11:102980060-10298014 1.0000 80 chr21:45905287-45905367 1.0000 80 chr1:16767512-16767592 1.0000 80 chr6:139456097-139456177 1.0000 80 chr6:15245076-15245156 1.0000 80 chr11:62495824-62495904 1.0000 80 chr2:131911743-131911823 1.0000 80 chr6:146285696-146285776 1.0000 80 chr12:72332652-72332732 1.0000 80 chr1:95582758-95582838 1.0000 80 chr9:132641518-132641598 1.0000 80 chr5:172759101-172759181 1.0000 80 chr1:155247162-155247242 1.0000 80 chr1:2343908-2343988 1.0000 80 chr20:49094921-49095001 1.0000 80 chrX:24711669-24711749 1.0000 80 chr3:13257559-13257639 1.0000 80 chr15:75074161-75074241 1.0000 80 chr12:49962147-49962227 1.0000 80 chr6:35310215-35310295 1.0000 80 chr12:122277505-12227758 1.0000 80 chr17:60501177-60501257 1.0000 80 chr4:4291915-4291995 1.0000 80 chr6:3372587-3372667 1.0000 80 chr15:91429347-91429427 1.0000 80 chr6:27112701-27112781 1.0000 80 chr15:40337418-40337498 1.0000 80 chr10:73533307-73533387 1.0000 80 chr14:77251305-77251385 1.0000 80 chr17:37558966-37559046 1.0000 80 chr1:51762571-51762651 1.0000 80 chr5:145214907-145214987 1.0000 80 chr19:40950446-40950526 1.0000 80 chr11:112160860-11216094 1.0000 80 chr19:2151851-2151931 1.0000 80 chr19:42806488-42806568 1.0000 80 chr12:120426638-12042671 1.0000 80 chr17:62971702-62971782 1.0000 80 chr11:65848046-65848126 1.0000 80 chr15:101817704-10181778 1.0000 80 chr19:45971128-45971208 1.0000 80 chr19:39342505-39342585 1.0000 80 chr10:74033428-74033508 1.0000 80 chr1:154244883-154244963 1.0000 80 chr2:16898980-16899060 1.0000 80 chr1:181999033-181999113 1.0000 80 chr2:29117181-29117261 1.0000 80 chr11:82996833-82996913 1.0000 80 chr9:36258475-36258555 1.0000 80 chr15:75497238-75497318 1.0000 80 chr17:33307452-33307532 1.0000 80 chr20:34129634-34129714 1.0000 80 chr6:53404503-53404583 1.0000 80 chr16:74402179-74402259 1.0000 80 chr2:127644007-127644087 1.0000 80 chr16:691857-691937 1.0000 80 chr2:183989586-183989666 1.0000 80 chr22:46409969-46410049 1.0000 80 chr19:2236389-2236469 1.0000 80 chr18:23671147-23671227 1.0000 80 chr1:92545995-92546075 1.0000 80 chr3:10206532-10206612 1.0000 80 chr6:140469462-140469542 1.0000 80 chr17:4736437-4736517 1.0000 80 chr11:111472797-11147287 1.0000 80 chrX:15693740-15693820 1.0000 80 chr17:27070851-27070931 1.0000 80 chr19:14202386-14202466 1.0000 80 chr10:31892512-31892592 1.0000 80 chr6:117002629-117002709 1.0000 80 chr9:131038418-131038498 1.0000 80 chr2:47499643-47499723 1.0000 80 chr15:41198749-41198829 1.0000 80 chr16:8962611-8962691 1.0000 80 chr4:1124489-1124569 1.0000 80 chr1:805187-805267 1.0000 80 chr1:37900013-37900093 1.0000 80 chr1:3688719-3688799 1.0000 80 chr17:43045887-43045967 1.0000 80 chr1:26438228-26438308 1.0000 80 chr7:32931182-32931262 1.0000 80 chr6:35773049-35773129 1.0000 80 chr11:35843519-35843599 1.0000 80 chr1:159167953-159168033 1.0000 80 chr1:150437013-150437093 1.0000 80 chr7:642258-642338 1.0000 80 chr16:22207088-22207168 1.0000 80 chr6:33172257-33172337 1.0000 80 chr6:150393433-150393513 1.0000 80 chr10:121632445-12163252 1.0000 80 chr7:100450001-100450081 1.0000 80 chr6:37673326-37673406 1.0000 80 chr17:38269635-38269715 1.0000 80 chr1:179262884-179262964 1.0000 80 chr6:146285490-146285570 1.0000 80 chr6:126070682-126070762 1.0000 80 chr19:7745572-7745652 1.0000 80 chr19:19145274-19145354 1.0000 80 chr7:16685030-16685110 1.0000 80 chr22:19166489-19166569 1.0000 80 chr2:242801723-242801803 1.0000 80 chr1:210001454-210001534 1.0000 80 chr1:143467636-143467716 1.0000 80 chr3:9542349-9542429 1.0000 80 chr16:5147613-5147693 1.0000 80 chr6:28731980-28732060 1.0000 80 chr9:138863918-138863998 1.0000 80 chr21:48055886-48055966 1.0000 80 chr6:159065810-159065890 1.0000 80 chr12:122064261-12206434 1.0000 80 chr19:48281762-48281842 1.0000 80 chr12:95611436-95611516 1.0000 80 chr8:126013045-126013125 1.0000 80 chr2:73441579-73441659 1.0000 80 chr22:22307183-22307263 1.0000 80 chr12:107487705-10748778 1.0000 80 chr6:34856922-34857002 1.0000 80 chr4:110736908-110736988 1.0000 80 chr7:100080934-100081014 1.0000 80 chr2:133025752-133025832 1.0000 80 chr6:85473386-85473466 1.0000 80 chr19:36605833-36605913 1.0000 80 chr6:31697306-31697386 1.0000 80 chr8:141646360-141646440 1.0000 80 chr10:104503374-10450345 1.0000 80 chr7:1216789-1216869 1.0000 80 chr4:39137038-39137118 1.0000 80 chr19:39616518-39616598 1.0000 80 chr19:17580275-17580355 1.0000 80 chr2:10549362-10549442 1.0000 80 chr1:161087694-161087774 1.0000 80 chr3:132136092-132136172 1.0000 80 chr3:4910385-4910465 1.0000 80 chr20:36156238-36156318 1.0000 80 chr1:157125184-157125264 1.0000 80 chr6:157909810-157909890 1.0000 80 chr9:140111840-140111920 1.0000 80 chr19:47987164-47987244 1.0000 80 chr10:131909006-13190908 1.0000 80 chr17:17109780-17109860 1.0000 80 chr22:21921891-21921971 1.0000 80 chr19:54693235-54693315 1.0000 80 chrX:47510378-47510458 1.0000 80 chr14:32670532-32670612 1.0000 80 chr1:26222018-26222098 1.0000 80 chr21:47684815-47684895 1.0000 80 chr10:103590478-10359055 1.0000 80 chr16:75600066-75600146 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_KLF13/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/KLF13.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.172 C 0.329 G 0.33 T 0.17 Background letter frequencies (from file dataset with add-one prior applied): A 0.172 C 0.329 G 0.33 T 0.17 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GKGGGCGK MEME-1 width = 8 sites = 124 llr = 882 E-value = 1.7e-053 ******************************************************************************** -------------------------------------------------------------------------------- Motif GKGGGCGK MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1::::::: pos.-specific C :::::9:: probability G 96aaa:a4 matrix T :4:::1:6 bits 2.6 2.3 2.0 1.8 Relative 1.5 *** Entropy 1.3 * *** * (10.3 bits) 1.0 * ****** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGGGGCGT consensus T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGGGCGK MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:157125184-157125264 19 3.72e-05 ATGTGTGCAG GTGGGCGT GGCTGGCTTC chr7:1216789-1216869 30 3.72e-05 AGGAACCCAT GTGGGCGT TTTCCAGTTA chr7:642258-642338 34 3.72e-05 GGCGTGGGTG GTGGGCGT TTCCTCTGTG chr2:127644007-127644087 14 3.72e-05 CTTCAGCGGG GTGGGCGT GGTCTGGTCG chr3:13257559-13257639 52 3.72e-05 ATGCCTTTAA GTGGGCGT GTCCTTTGGC chr6:105307307-105307387 18 3.72e-05 GAAAGTAAAA GTGGGCGT TTTCTCAGCT chr7:75932843-75932923 3 3.72e-05 GA GTGGGCGT GTGCGCGGCT chr2:8992459-8992539 58 3.72e-05 GGCCTGGGAG GTGGGCGT TCCCTTTCAG chr16:30570114-30570194 32 3.72e-05 AACCAATGGA GTGGGCGT ggcgcagtgg chr4:75409182-75409262 46 3.72e-05 AGAAAGGGAA GTGGGCGT GGTGCTGTAG chr19:3022899-3022979 21 3.72e-05 atgtacatga gtgggcgt ggctatgtca chr7:75272309-75272389 54 3.72e-05 AGAAGGTGAG GTGGGCGT GTCTTGGTAG chr17:76908932-76909012 33 3.72e-05 ggccttacca gtgggcgt ggctgtgttc chr22:19946850-19946930 49 3.72e-05 GGATGGCCAG GTGGGCGT GATCCCACCC chr17:34274288-34274368 36 3.72e-05 GGTAGAGGAA GTGGGCGT TTCAGGGCTT chr16:58028862-58028942 57 3.72e-05 GACAGAGGAG GTGGGCGT GGCTGGTCAG chr9:140111840-140111920 20 1.09e-04 AGCGGCAGGA GGGGGCGT GGTTGTGCAG chr12:95611436-95611516 54 1.09e-04 GGCTCGAAAA GGGGGCGT GAGCGGCGAG chr6:126070682-126070762 46 1.09e-04 CGCTCGAGGG GGGGGCGT GGCCGGCGCC chr1:179262884-179262964 21 1.09e-04 CTCGGAGGCA GGGGGCGT AGGGGCCGGG chr7:32931182-32931262 45 1.09e-04 gcgcggcggc gggggcgt ggccctcccg chr6:117002629-117002709 42 1.09e-04 CAGCGGTCGC GGGGGCGT GGCAGCCGGA chr16:691857-691937 19 1.09e-04 TTTAAGGGCC GGGGGCGT GTAgcgggcc chr20:34129634-34129714 38 1.09e-04 GCCCGCGCAA GGGGGCGT GGCAGCATCG chr10:74033428-74033508 31 1.09e-04 TTTCCAGAAA GGGGGCGT GGCGGTGGGT chr15:101817704-10181778 69 1.09e-04 CCAAACGCAG GGGGGCGT GGCC chr17:37558966-37559046 2 1.09e-04 C GGGGGCGT TTTCCCGATG chr4:4291915-4291995 57 1.09e-04 GGCAAGCCAA GGGGGCGT TGTCGTGATG chr6:35310215-35310295 54 1.09e-04 CCGGGCGGAA GGGGGCGT GGGGAGGGAA chr6:15245076-15245156 19 1.09e-04 CCCCGCGCGT GGGGGCGT GCGCGACTGC chr21:45905287-45905367 8 1.09e-04 ggtagag gggggcgt ggtccccggc chr19:56135997-56136077 33 1.09e-04 ggggctgcga gggggcgt ggtgcagcag chr3:47822920-47823000 31 1.09e-04 Agcgggcggc gggggcgt ggcgggcccg chr11:63606206-63606286 36 1.09e-04 GGCTGTGGGA GGGGGCGT GGCCGGCTCA chr12:52417595-52417675 19 1.09e-04 GGTCCTGGTA GGGGGCGT GGCCTGGCCG chr3:194354389-194354469 72 1.09e-04 CCGAGGTGAA GGGGGCGT G chr21:47744666-47744746 47 1.09e-04 ggccggggcc gggggcgt ggcgcgggTG chr5:133862583-133862663 33 1.09e-04 ggcgACGGCA GGGGGCGT GGCCCTTGTT chr20:37274922-37275002 36 1.09e-04 GAGGCCACCA GGGGGCGT TGCGGCGCCG chr22:27068619-27068699 36 1.09e-04 GAAGGCAGGA GGGGGCGT GCCCCTCACC chr2:231577463-231577543 50 1.09e-04 CGAGGCGGAA GGGGGCGT TGCGGCACCG chr1:154946217-154946297 16 1.09e-04 AAGCTCCTAA GGGGGCGT GGTCCCCTAA chr12:679099-679179 42 1.09e-04 GCGGCTGCCG GGGGGCGT TTCCACCCCG chr19:54694806-54694886 28 1.09e-04 ACCTTTGTAA GGGGGCGT GTCGCCGCGC chr4:110736908-110736988 8 1.29e-04 CCCGCGG GTGGGTGT GTGCGCAAGG chr19:19145274-19145354 60 1.29e-04 TTGAACCAGA GTGGGTGT GGCTGGTAGA chr2:16898980-16899060 34 1.29e-04 ATGCTGTGAA GTGGGTGT GTCCCCAAGG chr7:65580470-65580550 60 1.29e-04 CAGGGGGTGT GTGGGTGT GTGTGCAAGG chr8:128908122-128908202 25 1.29e-04 atgtaaatga gtgggtgt ggctgtgtgc chrX:47510378-47510458 64 2.20e-04 TTGTATAGAA ATGGGCGT AGCAGCCGG chr4:39137038-39137118 13 2.20e-04 ctaatcagta gtGGGCGG GGACGCTCAG chr6:85473386-85473466 3 2.20e-04 GA GTGGGCGG CGGCCGCCCG chr12:122064261-12206434 9 2.20e-04 CAGGGACC GTGGGCGG TGCCGTCGGA chr1:143467636-143467716 19 2.20e-04 AAATGGCGAA GTGGGCGG GGTGGCACAT chr17:38269635-38269715 40 2.20e-04 TCCACGTGGA GTGGGCGG AACGCGCTGA chr6:150393433-150393513 42 2.20e-04 GGAGTTGCAA GTGGGCGG GGCAGGGCTA chr1:159167953-159168033 49 2.20e-04 ATATCCTTAA GTGGGCGG GACTGGAACG chr19:2236389-2236469 48 2.20e-04 GGCTGCTGGC GTGGGCGG GGTACCGGTT chr2:183989586-183989666 41 2.20e-04 GTACACGTGG GTGGGCGG TGCCCTGAAG chr11:65848046-65848126 49 2.20e-04 cagtttaaaa gtgggcgg ggctggaatt chr19:2151851-2151931 26 2.20e-04 GTGGCTGGAT GTGGGCGG GGCGCCCACG chr5:145214907-145214987 9 2.20e-04 ACAGCCAC ATGGGCGT GGCCTTTTTC chr6:3372587-3372667 52 2.20e-04 GGAAGGGGGG ATGGGCGT GGCTGCTGAC chr12:122277505-12227758 28 2.20e-04 GAGTCCGCTG GTGGGCGG GACCCAAGGG chr19:11590431-11590511 49 2.20e-04 cggggcctag atgggcgt gcccgggcgt chr6:27181004-27181084 6 2.20e-04 ctgag gtgggcgg atcacctgag chr5:179517583-179517663 21 2.20e-04 GCCGGGCTGA GTGGGCGG TGCCGGAGGG chr2:38830638-38830718 38 2.20e-04 TCTGGTAGAA GTGGGCGG ACCCTCCCGC chr10:102106306-10210638 23 2.20e-04 CGCGTGGCTG GTGGGCGG GGCAGAGCCA chr1:17727576-17727656 60 2.20e-04 AGAGAGGCAG GTGGGCGG CTGGCTTTCA chr1:22968611-22968691 45 2.20e-04 GCGGGGCCAA GTGGGCGG GGCACGGGAG chr1:26438228-26438308 44 2.58e-04 GTCGGCGTAA GGGGGTGT GTCCGCGCGC chr15:41198749-41198829 23 2.58e-04 CCTGGCTCCT GGGGGTGT GGCCGCCGGA chr19:14202386-14202466 69 2.58e-04 CCAACCCCCT GGGGGTGT GTGG chr20:49094921-49095001 5 2.58e-04 cgat gggggtgt ggctcacttc chr15:76440406-76440486 62 2.58e-04 CACCTGGGTC GGGGGTGT GTCGGGGATG chr22:19619800-19619880 59 2.58e-04 ggtgtgggat gggggtgt ggctcgtttc chr5:36241053-36241133 44 2.58e-04 CAGAGTAAAA GGGGGTGT GTCCGCGGTT chr3:132136092-132136172 5 4.35e-04 GCCC AGGGGCGT GTCCTTTTCA chr7:100080934-100081014 6 4.35e-04 CACCT GGGGGCGG TGGGGAAAGG chr6:34856922-34857002 63 4.35e-04 AGGTGAGCTA gggggcgg ggcgcggggg chr12:107487705-10748778 62 4.35e-04 CAGAGGGTAA GGGGGCGG GGCCGGCGGG chr1:210001454-210001534 68 4.35e-04 ACAGGTCTGA AGGGGCGT GGCAG chr6:35773049-35773129 68 4.35e-04 GGACGGAGGA GGGGGCGG GGCTC chrX:15693740-15693820 31 4.35e-04 GGGGACTGAT AGGGGCGT AACCTGGAAT chr1:92545995-92546075 19 4.35e-04 TTTTACCCTA GGGGGCGG ATTTGGGTAG chr17:33307452-33307532 19 4.35e-04 CGTGGCAGAC GGGGGCGG GGACCGGTCG chr19:39342505-39342585 50 4.35e-04 GAACAGAGAC GGGGGCGG GGCCGCGTCT chr11:112160860-11216094 69 4.35e-04 GTGCGTgccg gggggcgg ggac chr9:132641518-132641598 48 4.35e-04 GCAGAGGGGA AGGGGCGT GGTGAGCGGC chr1:41826826-41826906 63 4.35e-04 GCGCCGAGCA GGGGGCGG GGTCGCGCCA chr15:44580970-44581050 72 4.35e-04 ATTTGAGGAG GGGGGCGG G chr1:71513470-71513550 64 4.35e-04 ATAAGGCCGA GGGGGCGG GGCGCCCGT chr11:71934335-71934415 45 4.35e-04 TTTTTTGGGA GGGGGCGG GCCAGACCCT chr16:2053980-2054060 1 4.35e-04 . GGGGGCGG CAAGGCCAGT chrX:128741092-128741172 51 4.35e-04 TTTAAGGGAG AGGGGCGT GGTACAGAAA chr19:1248245-1248325 24 4.35e-04 GCGACAGGAA GGGGGCGG GGCAGCGAGT chr2:69664115-69664195 47 4.35e-04 TAGAGGGCCT GGGGGCGG GAGAGGCACA chr1:26222018-26222098 5 4.83e-04 agaa gtgggtgg gcccaagggg chr17:27070851-27070931 27 4.83e-04 CCATGATCCC GTGGGTGG GCGAGACTGG chr16:74402179-74402259 49 5.40e-04 CCCCTGCCAC GTGGGCTT GTTTGGGTCT chr14:32670532-32670612 2 6.69e-04 G AGGGGTGT GGCCGCCCTG chr19:17580275-17580355 61 6.69e-04 TAAAAGGAGA GGGGGTGG GGCAAGGCTT chr15:75497238-75497318 2 6.69e-04 T GGGGGTGG ATCCAGGCTC chr12:120426638-12042671 42 6.69e-04 TACGAGAGCT GAGGGCGT GGCCACACCC chr17:60501177-60501257 24 6.69e-04 TCTTCTGAAA GAGGGCGT GGTCCGCAGG chr1:16767512-16767592 48 6.69e-04 TGGCGGCGGG GAGGGCGT TAAAGCCGTA chr10:43697789-43697869 2 6.69e-04 A AGGGGTGT GACCCCGAGG chr2:10549362-10549442 18 7.42e-04 GGCACCTGAG AGGGGCGG GGTCTCAGCT chr10:121632445-12163252 19 7.42e-04 ggcgaggagg aggggcgg cggcggcgcc chr19:45971128-45971208 57 7.42e-04 TTGTCCAGCA AGGGGCGG GTGACGTAAG chr12:49962147-49962227 29 7.42e-04 CGACCCGGGG AGGGGCGG GACCGCGGAC chr8:126013045-126013125 3 8.18e-04 tt gtaggcgt acaagaatgg chr6:157909810-157909890 21 9.67e-04 GTTTGCATGA ATGGGCTT ATCTGCCAGG chr17:4736437-4736517 21 9.67e-04 GCACCAGCTG GTGGGCGC GCTCCGCGGC chr6:139456097-139456177 58 9.67e-04 AGGTCACCTG GTGGGCGC GGCCAGGCCG chr19:36605833-36605913 22 1.14e-03 TTCGCCAAAA GAGGGCGG AGCTGCGCAC chr6:37673326-37673406 4 1.14e-03 CTT GGAGGCGT TCAGCACACC chr19:39616518-39616598 62 1.39e-03 GGGTCCGGCC AGGGGCTT GCGGTGGGCC chr3:9542349-9542429 49 1.39e-03 GCCGCCAGGA GGGGGCGC TGGACGAAGC chr1:2343908-2343988 9 1.39e-03 CACCTCCG GGGGGCTG GCGGCGGCCG chr1:155247162-155247242 24 1.39e-03 gccctcgcca gggggcgc cgcgcagccc chr9:136019994-136020074 69 1.39e-03 CCCCCTGGCT GGGGGCTG GGTT chr16:5147613-5147693 52 1.40e-03 AAGGAGCGCA GTGTGCGT GCCGCCAGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGGGCGK MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:157125184-157125264 3.7e-05 18_[+1]_54 chr7:1216789-1216869 3.7e-05 29_[+1]_43 chr7:642258-642338 3.7e-05 33_[+1]_39 chr2:127644007-127644087 3.7e-05 13_[+1]_59 chr3:13257559-13257639 3.7e-05 51_[+1]_21 chr6:105307307-105307387 3.7e-05 17_[+1]_55 chr7:75932843-75932923 3.7e-05 2_[+1]_70 chr2:8992459-8992539 3.7e-05 57_[+1]_15 chr16:30570114-30570194 3.7e-05 31_[+1]_41 chr4:75409182-75409262 3.7e-05 45_[+1]_27 chr19:3022899-3022979 3.7e-05 20_[+1]_52 chr7:75272309-75272389 3.7e-05 53_[+1]_19 chr17:76908932-76909012 3.7e-05 32_[+1]_40 chr22:19946850-19946930 3.7e-05 48_[+1]_24 chr17:34274288-34274368 3.7e-05 35_[+1]_37 chr16:58028862-58028942 3.7e-05 56_[+1]_16 chr9:140111840-140111920 0.00011 19_[+1]_53 chr12:95611436-95611516 0.00011 53_[+1]_19 chr6:126070682-126070762 0.00011 45_[+1]_27 chr1:179262884-179262964 0.00011 20_[+1]_52 chr7:32931182-32931262 0.00011 44_[+1]_28 chr6:117002629-117002709 0.00011 41_[+1]_31 chr16:691857-691937 0.00011 18_[+1]_54 chr20:34129634-34129714 0.00011 37_[+1]_35 chr10:74033428-74033508 0.00011 30_[+1]_42 chr15:101817704-10181778 0.00011 68_[+1]_4 chr17:37558966-37559046 0.00011 1_[+1]_71 chr4:4291915-4291995 0.00011 56_[+1]_16 chr6:35310215-35310295 0.00011 53_[+1]_19 chr6:15245076-15245156 0.00011 18_[+1]_54 chr21:45905287-45905367 0.00011 7_[+1]_65 chr19:56135997-56136077 0.00011 32_[+1]_40 chr3:47822920-47823000 0.00011 30_[+1]_42 chr11:63606206-63606286 0.00011 35_[+1]_37 chr12:52417595-52417675 0.00011 18_[+1]_54 chr3:194354389-194354469 0.00011 71_[+1]_1 chr21:47744666-47744746 0.00011 46_[+1]_26 chr5:133862583-133862663 0.00011 32_[+1]_40 chr20:37274922-37275002 0.00011 35_[+1]_37 chr22:27068619-27068699 0.00011 35_[+1]_37 chr2:231577463-231577543 0.00011 49_[+1]_23 chr1:154946217-154946297 0.00011 15_[+1]_57 chr12:679099-679179 0.00011 41_[+1]_31 chr19:54694806-54694886 0.00011 27_[+1]_45 chr4:110736908-110736988 0.00013 7_[+1]_65 chr19:19145274-19145354 0.00013 59_[+1]_13 chr2:16898980-16899060 0.00013 33_[+1]_39 chr7:65580470-65580550 0.00013 59_[+1]_13 chr8:128908122-128908202 0.00013 24_[+1]_48 chrX:47510378-47510458 0.00022 63_[+1]_9 chr4:39137038-39137118 0.00022 12_[+1]_60 chr6:85473386-85473466 0.00022 2_[+1]_70 chr12:122064261-12206434 0.00022 8_[+1]_64 chr1:143467636-143467716 0.00022 18_[+1]_54 chr17:38269635-38269715 0.00022 39_[+1]_33 chr6:150393433-150393513 0.00022 41_[+1]_31 chr1:159167953-159168033 0.00022 48_[+1]_24 chr19:2236389-2236469 0.00022 47_[+1]_25 chr2:183989586-183989666 0.00022 40_[+1]_32 chr11:65848046-65848126 0.00022 48_[+1]_24 chr19:2151851-2151931 0.00022 25_[+1]_47 chr5:145214907-145214987 0.00022 8_[+1]_64 chr6:3372587-3372667 0.00022 51_[+1]_21 chr12:122277505-12227758 0.00022 27_[+1]_45 chr19:11590431-11590511 0.00022 48_[+1]_24 chr6:27181004-27181084 0.00022 5_[+1]_67 chr5:179517583-179517663 0.00022 20_[+1]_52 chr2:38830638-38830718 0.00022 37_[+1]_35 chr10:102106306-10210638 0.00022 22_[+1]_50 chr1:17727576-17727656 0.00022 59_[+1]_13 chr1:22968611-22968691 0.00022 44_[+1]_28 chr1:26438228-26438308 0.00026 43_[+1]_29 chr15:41198749-41198829 0.00026 22_[+1]_50 chr19:14202386-14202466 0.00026 68_[+1]_4 chr20:49094921-49095001 0.00026 4_[+1]_68 chr15:76440406-76440486 0.00026 61_[+1]_11 chr22:19619800-19619880 0.00026 58_[+1]_14 chr5:36241053-36241133 0.00026 43_[+1]_29 chr3:132136092-132136172 0.00044 4_[+1]_68 chr7:100080934-100081014 0.00044 5_[+1]_67 chr6:34856922-34857002 0.00044 62_[+1]_10 chr12:107487705-10748778 0.00044 61_[+1]_11 chr1:210001454-210001534 0.00044 67_[+1]_5 chr6:35773049-35773129 0.00044 67_[+1]_5 chrX:15693740-15693820 0.00044 30_[+1]_42 chr1:92545995-92546075 0.00044 18_[+1]_54 chr17:33307452-33307532 0.00044 18_[+1]_54 chr19:39342505-39342585 0.00044 49_[+1]_23 chr11:112160860-11216094 0.00044 68_[+1]_4 chr9:132641518-132641598 0.00044 47_[+1]_25 chr1:41826826-41826906 0.00044 62_[+1]_10 chr15:44580970-44581050 0.00044 71_[+1]_1 chr1:71513470-71513550 0.00044 63_[+1]_9 chr11:71934335-71934415 0.00044 44_[+1]_28 chr16:2053980-2054060 0.00044 [+1]_72 chrX:128741092-128741172 0.00044 50_[+1]_22 chr19:1248245-1248325 0.00044 23_[+1]_49 chr2:69664115-69664195 0.00044 46_[+1]_26 chr1:26222018-26222098 0.00048 4_[+1]_68 chr17:27070851-27070931 0.00048 26_[+1]_46 chr16:74402179-74402259 0.00054 48_[+1]_24 chr14:32670532-32670612 0.00067 1_[+1]_71 chr19:17580275-17580355 0.00067 60_[+1]_12 chr15:75497238-75497318 0.00067 1_[+1]_71 chr12:120426638-12042671 0.00067 41_[+1]_31 chr17:60501177-60501257 0.00067 23_[+1]_49 chr1:16767512-16767592 0.00067 47_[+1]_25 chr10:43697789-43697869 0.00067 1_[+1]_71 chr2:10549362-10549442 0.00074 17_[+1]_55 chr10:121632445-12163252 0.00074 18_[+1]_54 chr19:45971128-45971208 0.00074 56_[+1]_16 chr12:49962147-49962227 0.00074 28_[+1]_44 chr8:126013045-126013125 0.00082 2_[+1]_70 chr6:157909810-157909890 0.00097 20_[+1]_52 chr17:4736437-4736517 0.00097 20_[+1]_52 chr6:139456097-139456177 0.00097 57_[+1]_15 chr19:36605833-36605913 0.0011 21_[+1]_51 chr6:37673326-37673406 0.0011 3_[+1]_69 chr19:39616518-39616598 0.0014 61_[+1]_11 chr3:9542349-9542429 0.0014 48_[+1]_24 chr1:2343908-2343988 0.0014 8_[+1]_64 chr1:155247162-155247242 0.0014 23_[+1]_49 chr9:136019994-136020074 0.0014 68_[+1]_4 chr16:5147613-5147693 0.0014 51_[+1]_21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGGGCGK MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GKGGGCGK width=8 seqs=124 chr1:157125184-157125264 ( 19) GTGGGCGT 1 chr7:1216789-1216869 ( 30) GTGGGCGT 1 chr7:642258-642338 ( 34) GTGGGCGT 1 chr2:127644007-127644087 ( 14) GTGGGCGT 1 chr3:13257559-13257639 ( 52) GTGGGCGT 1 chr6:105307307-105307387 ( 18) GTGGGCGT 1 chr7:75932843-75932923 ( 3) GTGGGCGT 1 chr2:8992459-8992539 ( 58) GTGGGCGT 1 chr16:30570114-30570194 ( 32) GTGGGCGT 1 chr4:75409182-75409262 ( 46) GTGGGCGT 1 chr19:3022899-3022979 ( 21) GTGGGCGT 1 chr7:75272309-75272389 ( 54) GTGGGCGT 1 chr17:76908932-76909012 ( 33) GTGGGCGT 1 chr22:19946850-19946930 ( 49) GTGGGCGT 1 chr17:34274288-34274368 ( 36) GTGGGCGT 1 chr16:58028862-58028942 ( 57) GTGGGCGT 1 chr9:140111840-140111920 ( 20) GGGGGCGT 1 chr12:95611436-95611516 ( 54) GGGGGCGT 1 chr6:126070682-126070762 ( 46) GGGGGCGT 1 chr1:179262884-179262964 ( 21) GGGGGCGT 1 chr7:32931182-32931262 ( 45) GGGGGCGT 1 chr6:117002629-117002709 ( 42) GGGGGCGT 1 chr16:691857-691937 ( 19) GGGGGCGT 1 chr20:34129634-34129714 ( 38) GGGGGCGT 1 chr10:74033428-74033508 ( 31) GGGGGCGT 1 chr15:101817704-10181778 ( 69) GGGGGCGT 1 chr17:37558966-37559046 ( 2) GGGGGCGT 1 chr4:4291915-4291995 ( 57) GGGGGCGT 1 chr6:35310215-35310295 ( 54) GGGGGCGT 1 chr6:15245076-15245156 ( 19) GGGGGCGT 1 chr21:45905287-45905367 ( 8) GGGGGCGT 1 chr19:56135997-56136077 ( 33) GGGGGCGT 1 chr3:47822920-47823000 ( 31) GGGGGCGT 1 chr11:63606206-63606286 ( 36) GGGGGCGT 1 chr12:52417595-52417675 ( 19) GGGGGCGT 1 chr3:194354389-194354469 ( 72) GGGGGCGT 1 chr21:47744666-47744746 ( 47) GGGGGCGT 1 chr5:133862583-133862663 ( 33) GGGGGCGT 1 chr20:37274922-37275002 ( 36) GGGGGCGT 1 chr22:27068619-27068699 ( 36) GGGGGCGT 1 chr2:231577463-231577543 ( 50) GGGGGCGT 1 chr1:154946217-154946297 ( 16) GGGGGCGT 1 chr12:679099-679179 ( 42) GGGGGCGT 1 chr19:54694806-54694886 ( 28) GGGGGCGT 1 chr4:110736908-110736988 ( 8) GTGGGTGT 1 chr19:19145274-19145354 ( 60) GTGGGTGT 1 chr2:16898980-16899060 ( 34) GTGGGTGT 1 chr7:65580470-65580550 ( 60) GTGGGTGT 1 chr8:128908122-128908202 ( 25) GTGGGTGT 1 chrX:47510378-47510458 ( 64) ATGGGCGT 1 chr4:39137038-39137118 ( 13) GTGGGCGG 1 chr6:85473386-85473466 ( 3) GTGGGCGG 1 chr12:122064261-12206434 ( 9) GTGGGCGG 1 chr1:143467636-143467716 ( 19) GTGGGCGG 1 chr17:38269635-38269715 ( 40) GTGGGCGG 1 chr6:150393433-150393513 ( 42) GTGGGCGG 1 chr1:159167953-159168033 ( 49) GTGGGCGG 1 chr19:2236389-2236469 ( 48) GTGGGCGG 1 chr2:183989586-183989666 ( 41) GTGGGCGG 1 chr11:65848046-65848126 ( 49) GTGGGCGG 1 chr19:2151851-2151931 ( 26) GTGGGCGG 1 chr5:145214907-145214987 ( 9) ATGGGCGT 1 chr6:3372587-3372667 ( 52) ATGGGCGT 1 chr12:122277505-12227758 ( 28) GTGGGCGG 1 chr19:11590431-11590511 ( 49) ATGGGCGT 1 chr6:27181004-27181084 ( 6) GTGGGCGG 1 chr5:179517583-179517663 ( 21) GTGGGCGG 1 chr2:38830638-38830718 ( 38) GTGGGCGG 1 chr10:102106306-10210638 ( 23) GTGGGCGG 1 chr1:17727576-17727656 ( 60) GTGGGCGG 1 chr1:22968611-22968691 ( 45) GTGGGCGG 1 chr1:26438228-26438308 ( 44) GGGGGTGT 1 chr15:41198749-41198829 ( 23) GGGGGTGT 1 chr19:14202386-14202466 ( 69) GGGGGTGT 1 chr20:49094921-49095001 ( 5) GGGGGTGT 1 chr15:76440406-76440486 ( 62) GGGGGTGT 1 chr22:19619800-19619880 ( 59) GGGGGTGT 1 chr5:36241053-36241133 ( 44) GGGGGTGT 1 chr3:132136092-132136172 ( 5) AGGGGCGT 1 chr7:100080934-100081014 ( 6) GGGGGCGG 1 chr6:34856922-34857002 ( 63) GGGGGCGG 1 chr12:107487705-10748778 ( 62) GGGGGCGG 1 chr1:210001454-210001534 ( 68) AGGGGCGT 1 chr6:35773049-35773129 ( 68) GGGGGCGG 1 chrX:15693740-15693820 ( 31) AGGGGCGT 1 chr1:92545995-92546075 ( 19) GGGGGCGG 1 chr17:33307452-33307532 ( 19) GGGGGCGG 1 chr19:39342505-39342585 ( 50) GGGGGCGG 1 chr11:112160860-11216094 ( 69) GGGGGCGG 1 chr9:132641518-132641598 ( 48) AGGGGCGT 1 chr1:41826826-41826906 ( 63) GGGGGCGG 1 chr15:44580970-44581050 ( 72) GGGGGCGG 1 chr1:71513470-71513550 ( 64) GGGGGCGG 1 chr11:71934335-71934415 ( 45) GGGGGCGG 1 chr16:2053980-2054060 ( 1) GGGGGCGG 1 chrX:128741092-128741172 ( 51) AGGGGCGT 1 chr19:1248245-1248325 ( 24) GGGGGCGG 1 chr2:69664115-69664195 ( 47) GGGGGCGG 1 chr1:26222018-26222098 ( 5) GTGGGTGG 1 chr17:27070851-27070931 ( 27) GTGGGTGG 1 chr16:74402179-74402259 ( 49) GTGGGCTT 1 chr14:32670532-32670612 ( 2) AGGGGTGT 1 chr19:17580275-17580355 ( 61) GGGGGTGG 1 chr15:75497238-75497318 ( 2) GGGGGTGG 1 chr12:120426638-12042671 ( 42) GAGGGCGT 1 chr17:60501177-60501257 ( 24) GAGGGCGT 1 chr1:16767512-16767592 ( 48) GAGGGCGT 1 chr10:43697789-43697869 ( 2) AGGGGTGT 1 chr2:10549362-10549442 ( 18) AGGGGCGG 1 chr10:121632445-12163252 ( 19) AGGGGCGG 1 chr19:45971128-45971208 ( 57) AGGGGCGG 1 chr12:49962147-49962227 ( 29) AGGGGCGG 1 chr8:126013045-126013125 ( 3) GTAGGCGT 1 chr6:157909810-157909890 ( 21) ATGGGCTT 1 chr17:4736437-4736517 ( 21) GTGGGCGC 1 chr6:139456097-139456177 ( 58) GTGGGCGC 1 chr19:36605833-36605913 ( 22) GAGGGCGG 1 chr6:37673326-37673406 ( 4) GGAGGCGT 1 chr19:39616518-39616598 ( 62) AGGGGCTT 1 chr3:9542349-9542429 ( 49) GGGGGCGC 1 chr1:2343908-2343988 ( 9) GGGGGCTG 1 chr1:155247162-155247242 ( 24) GGGGGCGC 1 chr9:136019994-136020074 ( 69) GGGGGCTG 1 chr16:5147613-5147693 ( 52) GTGTGCGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGGGCGK MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.15456 E= 1.7e-053 -32 -1360 139 -1360 -241 -1360 75 128 -341 -1360 158 -1360 -1360 -1360 159 -439 -1360 -1360 160 -1360 -1360 138 -1360 -23 -1360 -1360 154 -207 -1360 -335 11 185 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGGGCGK MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 124 E= 1.7e-053 0.137097 0.000000 0.862903 0.000000 0.032258 0.000000 0.556452 0.411290 0.016129 0.000000 0.983871 0.000000 0.000000 0.000000 0.991935 0.008065 0.000000 0.000000 1.000000 0.000000 0.000000 0.854839 0.000000 0.145161 0.000000 0.000000 0.959677 0.040323 0.000000 0.032258 0.354839 0.612903 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGGGCGK MEME-1 regular expression -------------------------------------------------------------------------------- G[GT]GGGCG[TG] -------------------------------------------------------------------------------- Time 4.88 secs. ******************************************************************************** ******************************************************************************** MOTIF MCGCCCMC MEME-2 width = 8 sites = 100 llr = 756 E-value = 4.6e-048 ******************************************************************************** -------------------------------------------------------------------------------- Motif MCGCCCMC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 6:1:::4: pos.-specific C 4a:aaa58 probability G ::9::::: matrix T :::::::2 bits 2.6 2.3 2.0 1.8 Relative 1.5 * *** Entropy 1.3 ****** (10.9 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel ACGCCCCC consensus C A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCGCCCMC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:133025752-133025832 40 3.76e-05 GTGAGGCCTG ACGCCCAC CGATGCAAAT chr8:126013045-126013125 56 3.76e-05 atagcagtaa ACGCCCAC TTGCTTttta chr12:122064261-12206434 55 3.76e-05 GCCCACAACA ACGCCCAC TTCTTGGTGG chr21:48055886-48055966 41 3.76e-05 TTCTACGGCC ACGCCCAC CCCACCACCA chr1:150437013-150437093 22 3.76e-05 TTCTCCAGGA ACGCCCAC CAGCCCCAGC chr1:805187-805267 26 3.76e-05 CTGCTGGGCC ACGCCCAC TCCCCCACGC chr9:36258475-36258555 14 3.76e-05 TCGCCCAGCC ACGCCCAC CCGGAGTGCC chr1:154244883-154244963 61 3.76e-05 AAAGTGCGTC ACGCCCAC TCCCGTCACG chr17:62971702-62971782 25 3.76e-05 gcactacgcc acgcccac tggcgccacg chr19:42806488-42806568 48 3.76e-05 TGGCTCCGCC ACGCCCAC TCCTACCCCT chrX:24711669-24711749 13 3.76e-05 CGATCCAACC ACGCCCAC TCTCCTGCCC chr1:2343908-2343988 73 3.76e-05 CACGCCGGCC ACGCCCAC chr11:102980060-10298014 48 3.76e-05 CGAGAGGGCA ACGCCCAC CGCGCGCCGC chr19:8577039-8577119 61 3.76e-05 GGGTGGGGCC ACGCCCAC GTATGCCCCG chr1:207818391-207818471 42 3.76e-05 CGCCCAGGCC ACGCCCAC CTGTCATGCG chr14:90421011-90421091 73 3.76e-05 TACCGCGGCC ACGCCCAC chr6:13487068-13487148 35 3.76e-05 GGTGCCGAAC ACGCCCAC CCCGGGAAGC chr13:45694516-45694596 18 3.76e-05 GCGGACAGCC ACGCCCAC TCAAGAAATT chr5:142782158-142782238 30 3.76e-05 TCTCTCCGAC ACGCCCAC TTCTAACAGA chr2:121310687-121310767 27 3.76e-05 CTCCTGAGAC ACGCCCAC TCTGCAGAGG chr12:132845428-13284550 68 3.76e-05 aggggccgga acgcccac gtgtg chr11:9594679-9594759 32 3.76e-05 GCCCACTGCC ACGCCCAC TACGCCCCAG chr10:81818673-81818753 45 3.76e-05 ttgagccacc acgcccAC TCGTGCTTTA chr17:45078610-45078690 33 3.76e-05 AAGCCCTGAA ACGCCCAC TTCCTGTACC chr5:122335786-122335866 19 3.76e-05 CCTGCCGGCC ACGCCCAC TCTTTTGGCT chr17:17109780-17109860 8 1.10e-04 ccaggcc acgccccc gtcacgcagc chr20:36156238-36156318 52 1.10e-04 AGCCGGGGAG ACGCCCCC TTAGTCTTCT chr7:100080934-100081014 42 1.10e-04 CCGCCGGAGC ACGCCCCC TGCTGGGCTG chr7:16685030-16685110 51 1.10e-04 gggctccgcc acgccccc cggccaggct chr7:100450001-100450081 52 1.10e-04 CCATCCTCAC ACGCCCCC TTTAGTGGGG chr6:33172257-33172337 39 1.10e-04 GTGTCGGGCC ACGCCCCC TCGGTGGGAG chr4:1124489-1124569 12 1.10e-04 CCTTAAGCAC ACGCCCCC TCAGGTGTCA chr1:92545995-92546075 58 1.10e-04 TCGGTCGGAA ACGCCCCC TTCTTCCTCC chr6:27112701-27112781 27 1.10e-04 acatgctacc acgccccc cctaattttt chr7:130353652-130353732 33 1.10e-04 GGACGCAGCC ACGCCCCC TTCTCCTCTT chr22:32058164-32058244 56 1.10e-04 TCAGCGTGCC ACGCCCCC TTCACACGCT chr7:1209571-1209651 71 1.10e-04 CCTCCCGGCC ACGCCCCC TT chr7:138917044-138917124 66 1.10e-04 CTTGGGGGAC ACGCCCCC CAGTCTG chr17:62359470-62359550 8 1.10e-04 GCTTACC ACGCCCCC GTCCATTGGC chr12:48153277-48153357 61 1.10e-04 TTCGAGTACC ACGCCCCC TACCGCGCGC chr9:136019994-136020074 48 1.10e-04 GGCTCCGCTC ACGCCCCC ACACCCCCTG chr17:35715508-35715588 17 1.10e-04 CCAACCCGCA ACGCCCCC TTCCCACGTG chr5:157170601-157170681 8 1.10e-04 GCGTACC ACGCCCCC CGGCCCGGGT chr16:28847922-28848002 43 1.10e-04 ACACACCCCC ACGCCCCC ACTGGACGGC chr8:141646360-141646440 66 1.29e-04 ATCAGCGGAC ACGCCCAT TCCAGCA chr1:37900013-37900093 33 1.29e-04 GGCGCCGGGC ACGCCCAT CTGCGCACTG chr22:22307183-22307263 49 2.01e-04 CCGGCCGGCC CCGCCCAC TTCCCGTCCC chr16:5147613-5147693 24 2.01e-04 GCTCGCCCCG CCGCCCAC CTGCCAGGGG chr9:131038418-131038498 72 2.01e-04 ACCGCTGTCC CCGCCCAC C chr17:4736437-4736517 50 2.01e-04 GCCTCGGCCG CCGCCCAC TTCTTTCACG chr3:10206532-10206612 9 2.01e-04 CTCCCGCC CCGCCCAC TTCCCCGCCG chr2:29117181-29117261 49 2.01e-04 ctcaggggat ccgcccac ttcggcctcc chr11:62495824-62495904 73 2.01e-04 AGCACTAGTC CCGCCCAC chr6:15245076-15245156 2 2.01e-04 A CCGCCCAC CCCGCGCGTG chr12:104609466-10460954 18 2.01e-04 ACCGAGCGCC CCGCCCAC CGCGTTCTCC chr1:154733029-154733109 20 2.01e-04 GGTGGGGACA CCGCCCAC CTGGCCCTCC chr12:49725432-49725512 47 2.01e-04 GGACTGGGAG CCGCCCAC TTTTGTCCTC chr10:103590478-10359055 7 2.58e-04 TGGGGC ACGCCCCT CCCCCACACG chr6:159065810-159065890 11 2.58e-04 cggacctgcc acgcccct ctcctctcgc chr9:138863918-138863998 39 2.58e-04 AGGTGCTGAA ACGCCCCT ATGCACCCAG chr1:3688719-3688799 2 2.58e-04 C ACGCCCCT CAAGCCCCGG chr16:8962611-8962691 5 2.58e-04 TGCC ACACCCAC CCCTTCCCCT chr10:31892512-31892592 21 2.58e-04 TCAGGGGGCC ACGCCCCT TCCGGATTCC chr6:53404503-53404583 64 2.58e-04 ACCATCCACC ACACCCAC TTTTATCTA chr1:51762571-51762651 36 2.58e-04 CCTGCACACC ACGCCCCT TCCTCAGAAG chr12:72332652-72332732 29 2.58e-04 AGCTGATCGC ACGCCCCT TCCTCTCAAT chr17:58217311-58217391 37 2.58e-04 GAAGTGCCCC ACGCCCCT CCGCCACCTA chr6:69282627-69282707 26 2.58e-04 cctagaggac acacccac cctgacaggc chr21:37814153-37814233 52 2.58e-04 TTCCGGTGAC ACACCCAC TTTCCCTTCA chr2:86070817-86070897 40 2.58e-04 GCACACCCCC ACGCCCCT GGTGGCAGCA chr6:157909810-157909890 50 3.96e-04 GCAGGGCACC CCGCCCCC CTTCCCAGGA chr1:161087694-161087774 62 3.96e-04 TCTGCGGACA CCGCCCCC TTCCCCGCGC chr10:104503374-10450345 52 3.96e-04 CTGGGTGGCC CCGCCCCC TTATGAAGCT chr6:31697306-31697386 27 3.96e-04 TGCAGCAGCC CCGCCCCC TTAACCCTCA chr6:146285490-146285570 37 3.96e-04 TCAGAGCACC CCGCCCCC TTTCTCCTGC chr16:691857-691937 36 3.96e-04 TGTAgcgggc ccgccccc tccccgcggc chr10:73533307-73533387 23 3.96e-04 CTCCAGGCAC CCGCCCCC TTCGCGCAGC chr5:172759101-172759181 54 3.96e-04 actgcacgcc ccgccccc ttggggccga chr1:41826826-41826906 29 3.96e-04 TGTTAGGGCT CCGCCCCC TAGCCCCCCC chr12:76478760-76478840 61 3.96e-04 ccggcccgcc ccgccccc TTCGGCGTTG chr10:88720267-88720347 8 3.96e-04 ACCAGCC CCGCCCCC AGGGCCTAGC chr19:1864244-1864324 12 3.96e-04 GCGGCCGGCC CCGCCCCC AGGCCACGTG chr11:71934335-71934415 73 3.96e-04 TTTATGGGCT CCGCCCCC chr3:48229868-48229948 56 3.96e-04 AGCTGCTGCC CCGCCCCC CTTTCCTAGT chr17:49336690-49336770 15 3.96e-04 CGTGCCCACC CCGCCCCC TTTCAATATT chr11:65812710-65812790 40 3.96e-04 CCCTGGGGCC CCGCCCCC TTACCAGCTG chr6:43742631-43742711 66 3.96e-04 CCCAGGCGCC CCGCCCCC CTGCCCA chr1:155247162-155247242 66 4.33e-04 AGTCTAGCAC ACACCCCC TCCGCCC chr19:47987164-47987244 20 5.89e-04 CACCATAGCG CCACCCAC CGGGAATGTA chr3:9542349-9542429 16 5.89e-04 CTGCAGGGCA CCGCCCCT TCCCTGCAGG chr2:38830638-38830718 52 5.89e-04 GCGGACCCTC CCGCCCCT AGCTGGGTGT chr12:68617087-68617167 68 5.89e-04 CCACACTGTC CCACCCAC TTTAG chr1:153590202-153590282 40 5.89e-04 ACCGAGATGC CCGCCCCT GCTCCCTCTG chr15:91429347-91429427 22 6.08e-04 TCCCTGCACC ACACCCCT TCCTCAAGTG chr7:29961149-29961229 47 6.08e-04 GGGAGCTGCC ACACCCCT TTTAACTTTT chr9:140111840-140111920 40 7.17e-04 TTGTGCAGCC CCACCCCC GGGAGGGGCT chr21:45905287-45905367 33 7.17e-04 ggctagggct ccaccccc ccggacctgg chr7:73981180-73981260 34 7.17e-04 GGTTGCAGCC ACGCCCTC TTTCCCACCA chr3:47913027-47913107 36 7.17e-04 CATGAGCACC ACGCCCTC TTCTTATCAT chr6:41418968-41419048 26 7.17e-04 CCTTGAGACC CCACCCCC ACGCCATCTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCGCCCMC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:133025752-133025832 3.8e-05 39_[+2]_33 chr8:126013045-126013125 3.8e-05 55_[+2]_17 chr12:122064261-12206434 3.8e-05 54_[+2]_18 chr21:48055886-48055966 3.8e-05 40_[+2]_32 chr1:150437013-150437093 3.8e-05 21_[+2]_51 chr1:805187-805267 3.8e-05 25_[+2]_47 chr9:36258475-36258555 3.8e-05 13_[+2]_59 chr1:154244883-154244963 3.8e-05 60_[+2]_12 chr17:62971702-62971782 3.8e-05 24_[+2]_48 chr19:42806488-42806568 3.8e-05 47_[+2]_25 chrX:24711669-24711749 3.8e-05 12_[+2]_60 chr1:2343908-2343988 3.8e-05 72_[+2] chr11:102980060-10298014 3.8e-05 47_[+2]_25 chr19:8577039-8577119 3.8e-05 60_[+2]_12 chr1:207818391-207818471 3.8e-05 41_[+2]_31 chr14:90421011-90421091 3.8e-05 72_[+2] chr6:13487068-13487148 3.8e-05 34_[+2]_38 chr13:45694516-45694596 3.8e-05 17_[+2]_55 chr5:142782158-142782238 3.8e-05 29_[+2]_43 chr2:121310687-121310767 3.8e-05 26_[+2]_46 chr12:132845428-13284550 3.8e-05 67_[+2]_5 chr11:9594679-9594759 3.8e-05 31_[+2]_41 chr10:81818673-81818753 3.8e-05 44_[+2]_28 chr17:45078610-45078690 3.8e-05 32_[+2]_40 chr5:122335786-122335866 3.8e-05 18_[+2]_54 chr17:17109780-17109860 0.00011 7_[+2]_65 chr20:36156238-36156318 0.00011 51_[+2]_21 chr7:100080934-100081014 0.00011 41_[+2]_31 chr7:16685030-16685110 0.00011 50_[+2]_22 chr7:100450001-100450081 0.00011 51_[+2]_21 chr6:33172257-33172337 0.00011 38_[+2]_34 chr4:1124489-1124569 0.00011 11_[+2]_61 chr1:92545995-92546075 0.00011 57_[+2]_15 chr6:27112701-27112781 0.00011 26_[+2]_46 chr7:130353652-130353732 0.00011 32_[+2]_40 chr22:32058164-32058244 0.00011 55_[+2]_17 chr7:1209571-1209651 0.00011 70_[+2]_2 chr7:138917044-138917124 0.00011 65_[+2]_7 chr17:62359470-62359550 0.00011 7_[+2]_65 chr12:48153277-48153357 0.00011 60_[+2]_12 chr9:136019994-136020074 0.00011 47_[+2]_25 chr17:35715508-35715588 0.00011 16_[+2]_56 chr5:157170601-157170681 0.00011 7_[+2]_65 chr16:28847922-28848002 0.00011 42_[+2]_30 chr8:141646360-141646440 0.00013 65_[+2]_7 chr1:37900013-37900093 0.00013 32_[+2]_40 chr22:22307183-22307263 0.0002 48_[+2]_24 chr16:5147613-5147693 0.0002 23_[+2]_49 chr9:131038418-131038498 0.0002 71_[+2]_1 chr17:4736437-4736517 0.0002 49_[+2]_23 chr3:10206532-10206612 0.0002 8_[+2]_64 chr2:29117181-29117261 0.0002 48_[+2]_24 chr11:62495824-62495904 0.0002 72_[+2] chr6:15245076-15245156 0.0002 1_[+2]_71 chr12:104609466-10460954 0.0002 17_[+2]_55 chr1:154733029-154733109 0.0002 19_[+2]_53 chr12:49725432-49725512 0.0002 46_[+2]_26 chr10:103590478-10359055 0.00026 6_[+2]_66 chr6:159065810-159065890 0.00026 10_[+2]_62 chr9:138863918-138863998 0.00026 38_[+2]_34 chr1:3688719-3688799 0.00026 1_[+2]_71 chr16:8962611-8962691 0.00026 4_[+2]_68 chr10:31892512-31892592 0.00026 20_[+2]_52 chr6:53404503-53404583 0.00026 63_[+2]_9 chr1:51762571-51762651 0.00026 35_[+2]_37 chr12:72332652-72332732 0.00026 28_[+2]_44 chr17:58217311-58217391 0.00026 36_[+2]_36 chr6:69282627-69282707 0.00026 25_[+2]_47 chr21:37814153-37814233 0.00026 51_[+2]_21 chr2:86070817-86070897 0.00026 39_[+2]_33 chr6:157909810-157909890 0.0004 49_[+2]_23 chr1:161087694-161087774 0.0004 61_[+2]_11 chr10:104503374-10450345 0.0004 51_[+2]_21 chr6:31697306-31697386 0.0004 26_[+2]_46 chr6:146285490-146285570 0.0004 36_[+2]_36 chr16:691857-691937 0.0004 35_[+2]_37 chr10:73533307-73533387 0.0004 22_[+2]_50 chr5:172759101-172759181 0.0004 53_[+2]_19 chr1:41826826-41826906 0.0004 28_[+2]_44 chr12:76478760-76478840 0.0004 60_[+2]_12 chr10:88720267-88720347 0.0004 7_[+2]_65 chr19:1864244-1864324 0.0004 11_[+2]_61 chr11:71934335-71934415 0.0004 72_[+2] chr3:48229868-48229948 0.0004 55_[+2]_17 chr17:49336690-49336770 0.0004 14_[+2]_58 chr11:65812710-65812790 0.0004 39_[+2]_33 chr6:43742631-43742711 0.0004 65_[+2]_7 chr1:155247162-155247242 0.00043 65_[+2]_7 chr19:47987164-47987244 0.00059 19_[+2]_53 chr3:9542349-9542429 0.00059 15_[+2]_57 chr2:38830638-38830718 0.00059 51_[+2]_21 chr12:68617087-68617167 0.00059 67_[+2]_5 chr1:153590202-153590282 0.00059 39_[+2]_33 chr15:91429347-91429427 0.00061 21_[+2]_51 chr7:29961149-29961229 0.00061 46_[+2]_26 chr9:140111840-140111920 0.00072 39_[+2]_33 chr21:45905287-45905367 0.00072 32_[+2]_40 chr7:73981180-73981260 0.00072 33_[+2]_39 chr3:47913027-47913107 0.00072 35_[+2]_37 chr6:41418968-41419048 0.00072 25_[+2]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCGCCCMC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MCGCCCMC width=8 seqs=100 chr2:133025752-133025832 ( 40) ACGCCCAC 1 chr8:126013045-126013125 ( 56) ACGCCCAC 1 chr12:122064261-12206434 ( 55) ACGCCCAC 1 chr21:48055886-48055966 ( 41) ACGCCCAC 1 chr1:150437013-150437093 ( 22) ACGCCCAC 1 chr1:805187-805267 ( 26) ACGCCCAC 1 chr9:36258475-36258555 ( 14) ACGCCCAC 1 chr1:154244883-154244963 ( 61) ACGCCCAC 1 chr17:62971702-62971782 ( 25) ACGCCCAC 1 chr19:42806488-42806568 ( 48) ACGCCCAC 1 chrX:24711669-24711749 ( 13) ACGCCCAC 1 chr1:2343908-2343988 ( 73) ACGCCCAC 1 chr11:102980060-10298014 ( 48) ACGCCCAC 1 chr19:8577039-8577119 ( 61) ACGCCCAC 1 chr1:207818391-207818471 ( 42) ACGCCCAC 1 chr14:90421011-90421091 ( 73) ACGCCCAC 1 chr6:13487068-13487148 ( 35) ACGCCCAC 1 chr13:45694516-45694596 ( 18) ACGCCCAC 1 chr5:142782158-142782238 ( 30) ACGCCCAC 1 chr2:121310687-121310767 ( 27) ACGCCCAC 1 chr12:132845428-13284550 ( 68) ACGCCCAC 1 chr11:9594679-9594759 ( 32) ACGCCCAC 1 chr10:81818673-81818753 ( 45) ACGCCCAC 1 chr17:45078610-45078690 ( 33) ACGCCCAC 1 chr5:122335786-122335866 ( 19) ACGCCCAC 1 chr17:17109780-17109860 ( 8) ACGCCCCC 1 chr20:36156238-36156318 ( 52) ACGCCCCC 1 chr7:100080934-100081014 ( 42) ACGCCCCC 1 chr7:16685030-16685110 ( 51) ACGCCCCC 1 chr7:100450001-100450081 ( 52) ACGCCCCC 1 chr6:33172257-33172337 ( 39) ACGCCCCC 1 chr4:1124489-1124569 ( 12) ACGCCCCC 1 chr1:92545995-92546075 ( 58) ACGCCCCC 1 chr6:27112701-27112781 ( 27) ACGCCCCC 1 chr7:130353652-130353732 ( 33) ACGCCCCC 1 chr22:32058164-32058244 ( 56) ACGCCCCC 1 chr7:1209571-1209651 ( 71) ACGCCCCC 1 chr7:138917044-138917124 ( 66) ACGCCCCC 1 chr17:62359470-62359550 ( 8) ACGCCCCC 1 chr12:48153277-48153357 ( 61) ACGCCCCC 1 chr9:136019994-136020074 ( 48) ACGCCCCC 1 chr17:35715508-35715588 ( 17) ACGCCCCC 1 chr5:157170601-157170681 ( 8) ACGCCCCC 1 chr16:28847922-28848002 ( 43) ACGCCCCC 1 chr8:141646360-141646440 ( 66) ACGCCCAT 1 chr1:37900013-37900093 ( 33) ACGCCCAT 1 chr22:22307183-22307263 ( 49) CCGCCCAC 1 chr16:5147613-5147693 ( 24) CCGCCCAC 1 chr9:131038418-131038498 ( 72) CCGCCCAC 1 chr17:4736437-4736517 ( 50) CCGCCCAC 1 chr3:10206532-10206612 ( 9) CCGCCCAC 1 chr2:29117181-29117261 ( 49) CCGCCCAC 1 chr11:62495824-62495904 ( 73) CCGCCCAC 1 chr6:15245076-15245156 ( 2) CCGCCCAC 1 chr12:104609466-10460954 ( 18) CCGCCCAC 1 chr1:154733029-154733109 ( 20) CCGCCCAC 1 chr12:49725432-49725512 ( 47) CCGCCCAC 1 chr10:103590478-10359055 ( 7) ACGCCCCT 1 chr6:159065810-159065890 ( 11) ACGCCCCT 1 chr9:138863918-138863998 ( 39) ACGCCCCT 1 chr1:3688719-3688799 ( 2) ACGCCCCT 1 chr16:8962611-8962691 ( 5) ACACCCAC 1 chr10:31892512-31892592 ( 21) ACGCCCCT 1 chr6:53404503-53404583 ( 64) ACACCCAC 1 chr1:51762571-51762651 ( 36) ACGCCCCT 1 chr12:72332652-72332732 ( 29) ACGCCCCT 1 chr17:58217311-58217391 ( 37) ACGCCCCT 1 chr6:69282627-69282707 ( 26) ACACCCAC 1 chr21:37814153-37814233 ( 52) ACACCCAC 1 chr2:86070817-86070897 ( 40) ACGCCCCT 1 chr6:157909810-157909890 ( 50) CCGCCCCC 1 chr1:161087694-161087774 ( 62) CCGCCCCC 1 chr10:104503374-10450345 ( 52) CCGCCCCC 1 chr6:31697306-31697386 ( 27) CCGCCCCC 1 chr6:146285490-146285570 ( 37) CCGCCCCC 1 chr16:691857-691937 ( 36) CCGCCCCC 1 chr10:73533307-73533387 ( 23) CCGCCCCC 1 chr5:172759101-172759181 ( 54) CCGCCCCC 1 chr1:41826826-41826906 ( 29) CCGCCCCC 1 chr12:76478760-76478840 ( 61) CCGCCCCC 1 chr10:88720267-88720347 ( 8) CCGCCCCC 1 chr19:1864244-1864324 ( 12) CCGCCCCC 1 chr11:71934335-71934415 ( 73) CCGCCCCC 1 chr3:48229868-48229948 ( 56) CCGCCCCC 1 chr17:49336690-49336770 ( 15) CCGCCCCC 1 chr11:65812710-65812790 ( 40) CCGCCCCC 1 chr6:43742631-43742711 ( 66) CCGCCCCC 1 chr1:155247162-155247242 ( 66) ACACCCCC 1 chr19:47987164-47987244 ( 20) CCACCCAC 1 chr3:9542349-9542429 ( 16) CCGCCCCT 1 chr2:38830638-38830718 ( 52) CCGCCCCT 1 chr12:68617087-68617167 ( 68) CCACCCAC 1 chr1:153590202-153590282 ( 40) CCGCCCCT 1 chr15:91429347-91429427 ( 22) ACACCCCT 1 chr7:29961149-29961229 ( 47) ACACCCCT 1 chr9:140111840-140111920 ( 40) CCACCCCC 1 chr21:45905287-45905367 ( 33) CCACCCCC 1 chr7:73981180-73981260 ( 34) ACGCCCTC 1 chr3:47913027-47913107 ( 36) ACGCCCTC 1 chr6:41418968-41419048 ( 26) CCACCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCGCCCMC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.99616 E= 4.6e-048 190 13 -1329 -1329 -1329 160 -1329 -1329 -52 -1329 142 -1329 -1329 160 -1329 -1329 -1329 160 -1329 -1329 -1329 160 -1329 -1329 136 72 -1329 -308 -1329 135 -1329 -9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCGCCCMC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 100 E= 4.6e-048 0.640000 0.360000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.120000 0.000000 0.880000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.440000 0.540000 0.000000 0.020000 0.000000 0.840000 0.000000 0.160000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCGCCCMC MEME-2 regular expression -------------------------------------------------------------------------------- [AC]CGCCC[CA]C -------------------------------------------------------------------------------- Time 8.38 secs. ******************************************************************************** ******************************************************************************** MOTIF WAAYTTTW MEME-3 width = 8 sites = 16 llr = 167 E-value = 1.6e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif WAAYTTTW MEME-3 Description -------------------------------------------------------------------------------- Simplified A 6a7::::6 pos.-specific C 1::4:::: probability G ::31:::: matrix T 3::6aaa4 bits 2.6 * *** 2.3 * *** 2.0 * *** 1.8 * *** Relative 1.5 * **** Entropy 1.3 ** **** (15.1 bits) 1.0 *** **** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel AAATTTTA consensus T GC T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAAYTTTW MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr8:126013045-126013125 73 1.45e-06 CTTGCTTttt aaattttt chr6:1515765-1515845 69 2.18e-06 ACGCCTACTT TAATTTTA AAAA chr6:28731980-28732060 70 2.89e-06 cacccctggc taattttt gtg chr6:27112701-27112781 37 2.89e-06 acgccccccc taattttt gtactgttag chr5:145214907-145214987 47 4.30e-06 CAAACTTTCG AAACTTTA TTGGCCACTC chr19:3022899-3022979 42 4.30e-06 tatgtcaata aaacttta tttgcaaaaa chr17:76908932-76909012 56 4.30e-06 tgttccaata aaacttta tttgcaCTAg chr8:128908122-128908202 48 4.30e-06 tgtgccaata aaacttta tttacaagaa chr3:193561079-193561159 57 7.11e-06 tttgtaaata aagtttta ttggaataca chr8:141646360-141646440 19 9.89e-06 AAAATCTAAG AAGTTTTT AGTAAACTGT chr7:29961149-29961229 57 1.13e-05 ACACCCCTTT TAACTTTT GCCAGGCTGT chr19:8577039-8577119 1 1.41e-05 . CAATTTTA AGTTAGGCGG chr6:105307307-105307387 42 1.54e-05 AGCTTTCAGT TAGTTTTT CCACCCGACC chr6:69282627-69282707 70 1.95e-05 ataatgtgtt aagcttta gtc chr17:38269635-38269715 57 2.77e-05 GAACGCGCTG AAAGTTTT GGCGGGGCTA chr8:127889027-127889107 36 3.98e-05 TTTAAATCCC CAGTTTTA AAGCCAGGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAAYTTTW MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:126013045-126013125 1.5e-06 72_[+3] chr6:1515765-1515845 2.2e-06 68_[+3]_4 chr6:28731980-28732060 2.9e-06 69_[+3]_3 chr6:27112701-27112781 2.9e-06 36_[+3]_36 chr5:145214907-145214987 4.3e-06 46_[+3]_26 chr19:3022899-3022979 4.3e-06 41_[+3]_31 chr17:76908932-76909012 4.3e-06 55_[+3]_17 chr8:128908122-128908202 4.3e-06 47_[+3]_25 chr3:193561079-193561159 7.1e-06 56_[+3]_16 chr8:141646360-141646440 9.9e-06 18_[+3]_54 chr7:29961149-29961229 1.1e-05 56_[+3]_16 chr19:8577039-8577119 1.4e-05 [+3]_72 chr6:105307307-105307387 1.5e-05 41_[+3]_31 chr6:69282627-69282707 2e-05 69_[+3]_3 chr17:38269635-38269715 2.8e-05 56_[+3]_16 chr8:127889027-127889107 4e-05 35_[+3]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAAYTTTW MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WAAYTTTW width=8 seqs=16 chr8:126013045-126013125 ( 73) AAATTTTT 1 chr6:1515765-1515845 ( 69) TAATTTTA 1 chr6:28731980-28732060 ( 70) TAATTTTT 1 chr6:27112701-27112781 ( 37) TAATTTTT 1 chr5:145214907-145214987 ( 47) AAACTTTA 1 chr19:3022899-3022979 ( 42) AAACTTTA 1 chr17:76908932-76909012 ( 56) AAACTTTA 1 chr8:128908122-128908202 ( 48) AAACTTTA 1 chr3:193561079-193561159 ( 57) AAGTTTTA 1 chr8:141646360-141646440 ( 19) AAGTTTTT 1 chr7:29961149-29961229 ( 57) TAACTTTT 1 chr19:8577039-8577119 ( 1) CAATTTTA 1 chr6:105307307-105307387 ( 42) TAGTTTTT 1 chr6:69282627-69282707 ( 70) AAGCTTTA 1 chr17:38269635-38269715 ( 57) AAAGTTTT 1 chr8:127889027-127889107 ( 36) CAGTTTTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAAYTTTW MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.8922 E= 1.6e-004 171 -139 -1064 88 254 -1064 -1064 -1064 200 -1064 -8 -1064 -1064 19 -240 173 -1064 -1064 -1064 256 -1064 -1064 -1064 256 -1064 -1064 -1064 256 171 -1064 -1064 136 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAAYTTTW MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 1.6e-004 0.562500 0.125000 0.000000 0.312500 1.000000 0.000000 0.000000 0.000000 0.687500 0.000000 0.312500 0.000000 0.000000 0.375000 0.062500 0.562500 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.562500 0.000000 0.000000 0.437500 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAAYTTTW MEME-3 regular expression -------------------------------------------------------------------------------- [AT]A[AG][TC]TTT[AT] -------------------------------------------------------------------------------- Time 11.68 secs. ******************************************************************************** ******************************************************************************** MOTIF WASARRAR MEME-4 width = 8 sites = 35 llr = 292 E-value = 1.6e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif WASARRAR MEME-4 Description -------------------------------------------------------------------------------- Simplified A 6a1856a4 pos.-specific C ::3::::: probability G ::5:54:6 matrix T 4:12:::: bits 2.6 * * 2.3 * * 2.0 * * 1.8 * * * Relative 1.5 ** * * Entropy 1.3 ** * ** (12.0 bits) 1.0 ** ***** 0.8 ** ***** 0.5 ** ***** 0.3 ** ***** 0.0 -------- Multilevel AAGAAAAG consensus T C GG A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WASARRAR MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:27070851-27070931 8 5.74e-06 CAGGGGA AAGAAAAG CCCATGATCC chr1:37900013-37900093 16 9.99e-06 TGGTGGCACT TAGAAAAG GCGCCGGGCA chr12:110869479-11086955 72 1.22e-05 ctactaaaaa tacaaaaa a chr9:131038418-131038498 43 1.50e-05 GTGGCGTCAC AACAAAAG CTGCGCACGC chr16:30570114-30570194 16 1.86e-05 ATGTTGAGTG TAAAAAAA CCAATGGAGT chr7:138917044-138917124 46 1.86e-05 AGTAGAAAGG AAGAGAAA ACCTTGGGGG chr12:132845428-13284550 29 2.28e-05 gcagccgacg tacaaaag cggcgccggt chr4:1124489-1124569 57 3.25e-05 TAGATGGCAG AAGAGAAG CATTGCTCCT chr14:77251305-77251385 44 3.25e-05 CTCCTGGGAG AAGAGAAG CCACACTGTG chr2:121310687-121310767 9 3.25e-05 TGGAGAAG AAGAGAAG CTCCTGAGAC chr1:154244883-154244963 10 3.81e-05 GTCTGCAGA AAGAAGAA CAGATTTAGG chr13:45694516-45694596 41 3.81e-05 AAATTTCCGA AACAGAAA GTTTGTCTGC chr4:75409182-75409262 33 3.81e-05 AATGACAGAC AACAGAAA GGGAAGTGGG chr3:10206532-10206612 40 4.35e-05 CGCCCCTGGC TAGAGAAG CCGCAGCCCG chrX:128741092-128741172 61 5.05e-05 AGGGGCGTGG TACAGAAA GCCGACTTCT chr17:43045887-43045967 35 6.21e-05 AGGGAGAGGA AAGAAGAG ACTGAGTACG chr6:146285696-146285776 24 6.21e-05 TTGTATCTCT AATAAAAA GGCAGGggcc chr11:62495824-62495904 25 6.21e-05 TTGAATAAGG AAGAAGAG TTAGAATTGC chr6:105307307-105307387 10 6.78e-05 AGCTCTGGA AAGTAAAA GTGGGCGTTT chr7:75272309-75272389 41 8.20e-05 ACGTAATTCG TACAGAAG GTGAGGTGGG chr2:69664115-69664195 13 8.20e-05 attctGCGTT TAGAAGAG GAGGGAATGC chr8:128908122-128908202 58 8.92e-05 aaactttatt tacaagaa ctggcaatag chr17:60501177-60501257 60 1.00e-04 ACGTTACGGA AAGTAAAG TGTTTCCGGC chr1:210001454-210001534 2 1.10e-04 T AACTAAAA AGCAGAAGAA chr5:122335786-122335866 70 1.10e-04 TGCTTTTGGT TAAAAGAA TTC chr6:27181004-27181084 71 1.28e-04 actctgtctc tactaaaa at chr17:34274288-34274368 28 1.28e-04 GCGACTCAGG TAGAGGAA GTGGGCGTTT chr9:140111840-140111920 4 1.46e-04 GGA AAGAGGAG CGGCAGGAGG chr12:48153277-48153357 4 1.46e-04 CCT AAGAGGAG ATTGGGGTTG chr10:121632445-12163252 55 1.84e-04 GGAGACGGGC AAAAGGAA GGGCACGCAG chr19:48281762-48281842 30 2.03e-04 TCTCCAGCCC AACAGGAG GATGGGAAGG chr2:86070817-86070897 18 2.03e-04 AAGCCGCAAG TAATAAAG GCATGCACAC chr17:37558966-37559046 51 2.14e-04 GGGCTCCTTG TATAGAAG CTGATCTGTG chr19:17580275-17580355 52 2.36e-04 TGTGTTTCCT AAAAGGAG AGGGGGTGGG chr6:27112701-27112781 52 2.84e-04 tttgtactgt tagtagag acggggtttc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WASARRAR MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:27070851-27070931 5.7e-06 7_[+4]_65 chr1:37900013-37900093 1e-05 15_[+4]_57 chr12:110869479-11086955 1.2e-05 71_[+4]_1 chr9:131038418-131038498 1.5e-05 42_[+4]_30 chr16:30570114-30570194 1.9e-05 15_[+4]_57 chr7:138917044-138917124 1.9e-05 45_[+4]_27 chr12:132845428-13284550 2.3e-05 28_[+4]_44 chr4:1124489-1124569 3.2e-05 56_[+4]_16 chr14:77251305-77251385 3.2e-05 43_[+4]_29 chr2:121310687-121310767 3.2e-05 8_[+4]_64 chr1:154244883-154244963 3.8e-05 9_[+4]_63 chr13:45694516-45694596 3.8e-05 40_[+4]_32 chr4:75409182-75409262 3.8e-05 32_[+4]_40 chr3:10206532-10206612 4.3e-05 39_[+4]_33 chrX:128741092-128741172 5.1e-05 60_[+4]_12 chr17:43045887-43045967 6.2e-05 34_[+4]_38 chr6:146285696-146285776 6.2e-05 23_[+4]_49 chr11:62495824-62495904 6.2e-05 24_[+4]_48 chr6:105307307-105307387 6.8e-05 9_[+4]_63 chr7:75272309-75272389 8.2e-05 40_[+4]_32 chr2:69664115-69664195 8.2e-05 12_[+4]_60 chr8:128908122-128908202 8.9e-05 57_[+4]_15 chr17:60501177-60501257 0.0001 59_[+4]_13 chr1:210001454-210001534 0.00011 1_[+4]_71 chr5:122335786-122335866 0.00011 69_[+4]_3 chr6:27181004-27181084 0.00013 70_[+4]_2 chr17:34274288-34274368 0.00013 27_[+4]_45 chr9:140111840-140111920 0.00015 3_[+4]_69 chr12:48153277-48153357 0.00015 3_[+4]_69 chr10:121632445-12163252 0.00018 54_[+4]_18 chr19:48281762-48281842 0.0002 29_[+4]_43 chr2:86070817-86070897 0.0002 17_[+4]_55 chr17:37558966-37559046 0.00021 50_[+4]_22 chr19:17580275-17580355 0.00024 51_[+4]_21 chr6:27112701-27112781 0.00028 51_[+4]_21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WASARRAR MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WASARRAR width=8 seqs=35 chr17:27070851-27070931 ( 8) AAGAAAAG 1 chr1:37900013-37900093 ( 16) TAGAAAAG 1 chr12:110869479-11086955 ( 72) TACAAAAA 1 chr9:131038418-131038498 ( 43) AACAAAAG 1 chr16:30570114-30570194 ( 16) TAAAAAAA 1 chr7:138917044-138917124 ( 46) AAGAGAAA 1 chr12:132845428-13284550 ( 29) TACAAAAG 1 chr4:1124489-1124569 ( 57) AAGAGAAG 1 chr14:77251305-77251385 ( 44) AAGAGAAG 1 chr2:121310687-121310767 ( 9) AAGAGAAG 1 chr1:154244883-154244963 ( 10) AAGAAGAA 1 chr13:45694516-45694596 ( 41) AACAGAAA 1 chr4:75409182-75409262 ( 33) AACAGAAA 1 chr3:10206532-10206612 ( 40) TAGAGAAG 1 chrX:128741092-128741172 ( 61) TACAGAAA 1 chr17:43045887-43045967 ( 35) AAGAAGAG 1 chr6:146285696-146285776 ( 24) AATAAAAA 1 chr11:62495824-62495904 ( 25) AAGAAGAG 1 chr6:105307307-105307387 ( 10) AAGTAAAA 1 chr7:75272309-75272389 ( 41) TACAGAAG 1 chr2:69664115-69664195 ( 13) TAGAAGAG 1 chr8:128908122-128908202 ( 58) TACAAGAA 1 chr17:60501177-60501257 ( 60) AAGTAAAG 1 chr1:210001454-210001534 ( 2) AACTAAAA 1 chr5:122335786-122335866 ( 70) TAAAAGAA 1 chr6:27181004-27181084 ( 71) TACTAAAA 1 chr17:34274288-34274368 ( 28) TAGAGGAA 1 chr9:140111840-140111920 ( 4) AAGAGGAG 1 chr12:48153277-48153357 ( 4) AAGAGGAG 1 chr10:121632445-12163252 ( 55) AAAAGGAA 1 chr19:48281762-48281842 ( 30) AACAGGAG 1 chr2:86070817-86070897 ( 18) TAATAAAG 1 chr17:37558966-37559046 ( 51) TATAGAAG 1 chr19:17580275-17580355 ( 52) AAAAGGAG 1 chr6:27112701-27112781 ( 52) TAGTAGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WASARRAR MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.4104 E= 1.6e-002 174 -1177 -1177 134 254 -1177 -1177 -1177 -26 -7 56 -157 227 -1177 -1177 1 166 -1177 47 -1177 187 -1177 17 -1177 254 -1177 -1177 -1177 132 -1177 79 -1177 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WASARRAR MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 1.6e-002 0.571429 0.000000 0.000000 0.428571 1.000000 0.000000 0.000000 0.000000 0.142857 0.314286 0.485714 0.057143 0.828571 0.000000 0.000000 0.171429 0.542857 0.000000 0.457143 0.000000 0.628571 0.000000 0.371429 0.000000 1.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.571429 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WASARRAR MEME-4 regular expression -------------------------------------------------------------------------------- [AT]A[GC]A[AG][AG]A[GA] -------------------------------------------------------------------------------- Time 15.00 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGAAGGA MEME-5 width = 8 sites = 16 llr = 151 E-value = 9.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGAAGGA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::aa::a pos.-specific C ::::::3: probability G 8aa::87: matrix T 3::::2:: bits 2.6 ** * 2.3 ** * 2.0 ** * 1.8 ** * Relative 1.5 **** * Entropy 1.3 **** * (13.6 bits) 1.0 ****** * 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGGAAGGA consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGAAGGA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr9:140111840-140111920 67 1.99e-05 TTTAGGCACT GGGAAGGA AAGTCC chr19:48281762-48281842 41 1.99e-05 ACAGGAGGAT GGGAAGGA GACTTGTGTG chr16:5147613-5147693 39 1.99e-05 CACCTGCCAG GGGAAGGA GCGCAGTGTG chr1:805187-805267 45 1.99e-05 CCCCCACGCG GGGAAGGA GCTTCGCGCT chr11:111472797-11147287 11 1.99e-05 CGCCGGGGCG GGGAAGGA GATCGCAGGC chr7:65580470-65580550 12 1.99e-05 GGGTGGAGAA GGGAAGGA CGTGAACCAG chr16:58028862-58028942 1 1.99e-05 . GGGAAGGA CCAGCCCCTC chr18:23671147-23671227 28 3.02e-05 AGGGCAGAGG TGGAAGGA CAAGGTGAAC chr22:21921891-21921971 6 6.03e-05 acagt gggaagca cacagtaggt chr6:13487068-13487148 46 6.03e-05 CGCCCACCCC GGGAAGCA TGGCTGCTCA chr7:1215908-1215988 43 6.03e-05 tggtggttgc gggaatga cggctggtcg chr12:68617087-68617167 28 6.03e-05 CAGACCCTTT GGGAAGCA GCAACAACCA chr1:22968611-22968691 11 6.03e-05 CCTCTGGGAG GGGAATGA ACTGGAGCTG chr6:85473386-85473466 32 7.58e-05 GAGGCGAGCC TGGAAGCA GTATCTGAAC chr8:126013045-126013125 18 7.58e-05 cgtacaagaa tggaagca gggctatcag chrX:15693740-15693820 43 7.58e-05 GGGCGTAACC TGGAATGA CGAAATGACG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGAAGGA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:140111840-140111920 2e-05 66_[+5]_6 chr19:48281762-48281842 2e-05 40_[+5]_32 chr16:5147613-5147693 2e-05 38_[+5]_34 chr1:805187-805267 2e-05 44_[+5]_28 chr11:111472797-11147287 2e-05 10_[+5]_62 chr7:65580470-65580550 2e-05 11_[+5]_61 chr16:58028862-58028942 2e-05 [+5]_72 chr18:23671147-23671227 3e-05 27_[+5]_45 chr22:21921891-21921971 6e-05 5_[+5]_67 chr6:13487068-13487148 6e-05 45_[+5]_27 chr7:1215908-1215988 6e-05 42_[+5]_30 chr12:68617087-68617167 6e-05 27_[+5]_45 chr1:22968611-22968691 6e-05 10_[+5]_62 chr6:85473386-85473466 7.6e-05 31_[+5]_41 chr8:126013045-126013125 7.6e-05 17_[+5]_55 chrX:15693740-15693820 7.6e-05 42_[+5]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGAAGGA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGAAGGA width=8 seqs=16 chr9:140111840-140111920 ( 67) GGGAAGGA 1 chr19:48281762-48281842 ( 41) GGGAAGGA 1 chr16:5147613-5147693 ( 39) GGGAAGGA 1 chr1:805187-805267 ( 45) GGGAAGGA 1 chr11:111472797-11147287 ( 11) GGGAAGGA 1 chr7:65580470-65580550 ( 12) GGGAAGGA 1 chr16:58028862-58028942 ( 1) GGGAAGGA 1 chr18:23671147-23671227 ( 28) TGGAAGGA 1 chr22:21921891-21921971 ( 6) GGGAAGCA 1 chr6:13487068-13487148 ( 46) GGGAAGCA 1 chr7:1215908-1215988 ( 43) GGGAATGA 1 chr12:68617087-68617167 ( 28) GGGAAGCA 1 chr1:22968611-22968691 ( 11) GGGAATGA 1 chr6:85473386-85473466 ( 32) TGGAAGCA 1 chr8:126013045-126013125 ( 18) TGGAAGCA 1 chrX:15693740-15693820 ( 43) TGGAATGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGAAGGA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8918 E= 9.2e+003 -1064 -1064 118 56 -1064 -1064 160 -1064 -1064 -1064 160 -1064 254 -1064 -1064 -1064 254 -1064 -1064 -1064 -1064 -1064 130 14 -1064 -7 106 -1064 254 -1064 -1064 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGAAGGA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 9.2e+003 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.812500 0.187500 0.000000 0.312500 0.687500 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGAAGGA MEME-5 regular expression -------------------------------------------------------------------------------- [GT]GGAAG[GC]A -------------------------------------------------------------------------------- Time 18.30 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:122335786-122335866 3.02e-03 18_[+2(3.76e-05)]_54 chr2:86070817-86070897 7.32e-03 80 chr7:29961149-29961229 1.51e-02 56_[+3(1.13e-05)]_16 chr1:22968611-22968691 2.41e-03 10_[+5(6.03e-05)]_62 chr1:153590202-153590282 3.60e-01 80 chr16:58028862-58028942 6.01e-04 [+5(1.99e-05)]_48_[+1(3.72e-05)]_16 chr17:45078610-45078690 1.96e-03 32_[+2(3.76e-05)]_40 chr10:81818673-81818753 8.25e-02 44_[+2(3.76e-05)]_28 chr6:41418968-41419048 4.62e-01 80 chr16:28847922-28848002 6.31e-02 80 chr2:69664115-69664195 1.12e-03 12_[+4(8.20e-05)]_60 chr12:68617087-68617167 2.97e-03 27_[+5(6.03e-05)]_45 chr8:130709515-130709595 4.10e-01 80 chr19:54694806-54694886 1.86e-02 80 chr17:34274288-34274368 7.40e-03 35_[+1(3.72e-05)]_37 chr12:679099-679179 1.52e-01 80 chr21:37814153-37814233 1.89e-01 80 chr15:85524084-85524164 1.59e-01 65_[+3(8.07e-05)]_7 chr5:36241053-36241133 1.36e-01 80 chr6:43742631-43742711 1.82e-01 80 chr11:65812710-65812790 3.50e-02 80 chr5:157170601-157170681 2.05e-02 80 chr7:1215908-1215988 5.05e-02 42_[+5(6.03e-05)]_30 chr1:154946217-154946297 5.76e-02 80 chr2:231577463-231577543 2.09e-01 80 chr10:52420102-52420182 2.67e-01 80 chr3:47913027-47913107 6.91e-01 80 chr19:1248245-1248325 9.98e-02 80 chr12:49725432-49725512 2.91e-02 80 chr9:123631520-123631600 4.73e-01 80 chr11:9594679-9594759 8.26e-02 31_[+2(3.76e-05)]_41 chr22:27068619-27068699 6.99e-02 80 chr7:73981180-73981260 3.26e-01 80 chr22:19946850-19946930 4.64e-02 48_[+1(3.72e-05)]_24 chr20:37274922-37275002 2.07e-01 80 chr11:123940206-12394028 8.69e-01 80 chr17:35715508-35715588 2.39e-01 80 chr6:1515765-1515845 1.84e-03 68_[+3(2.18e-06)]_4 chr8:128908122-128908202 4.29e-05 47_[+3(4.30e-06)]_2_[+4(8.92e-05)]_\ 15 chr17:76908932-76909012 1.49e-04 32_[+1(3.72e-05)]_15_[+3(4.30e-06)]_\ 17 chr12:132845428-13284550 9.35e-04 28_[+4(2.28e-05)]_31_[+2(3.76e-05)]_\ 5 chr22:19619800-19619880 1.12e-01 80 chr1:242161942-242162022 6.71e-02 80 chr6:69282627-69282707 2.35e-03 69_[+3(1.95e-05)]_3 chr9:136019994-136020074 7.45e-02 80 chr8:127889027-127889107 6.00e-02 35_[+3(3.98e-05)]_37 chr1:17727576-17727656 1.83e-01 80 chr12:48153277-48153357 5.17e-04 80 chr10:102106306-10210638 2.57e-01 80 chr20:18568563-18568643 5.76e-01 80 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********************************************************************************