******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/KLF1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr7:134917631-134917711 1.0000 80 chr17:45013226-45013306 1.0000 80 chr11:61034230-61034310 1.0000 80 chr1:116915330-116915410 1.0000 80 chr9:96356610-96356690 1.0000 80 chr6:56709076-56709156 1.0000 80 chr16:30493857-30493937 1.0000 80 chr1:17727582-17727662 1.0000 80 chr6:33636876-33636956 1.0000 80 chr11:35843478-35843558 1.0000 80 chr12:49690422-49690502 1.0000 80 chr20:35094018-35094098 1.0000 80 chr6:126193461-126193541 1.0000 80 chr21:15249455-15249535 1.0000 80 chr12:110348853-11034893 1.0000 80 chr1:153590198-153590278 1.0000 80 chr11:268156-268236 1.0000 80 chr10:11917937-11918017 1.0000 80 chr22:21220355-21220435 1.0000 80 chr3:72084285-72084365 1.0000 80 chr1:43201974-43202054 1.0000 80 chr16:81763994-81764074 1.0000 80 chr1:22179665-22179745 1.0000 80 chr19:45198781-45198861 1.0000 80 chr16:10742454-10742534 1.0000 80 chr5:134722838-134722918 1.0000 80 chr2:242786392-242786472 1.0000 80 chr4:1035375-1035455 1.0000 80 chr17:16931595-16931675 1.0000 80 chr2:86070810-86070890 1.0000 80 chr4:6695494-6695574 1.0000 80 chr17:40671201-40671281 1.0000 80 chr18:71815063-71815143 1.0000 80 chr1:156556925-156557005 1.0000 80 chr22:46481755-46481835 1.0000 80 chr8:38226196-38226276 1.0000 80 chr11:3986913-3986993 1.0000 80 chr1:22623285-22623365 1.0000 80 chr3:51705064-51705144 1.0000 80 chr1:23854852-23854932 1.0000 80 chr10:74003982-74004062 1.0000 80 chr10:43808258-43808338 1.0000 80 chr7:102986-103066 1.0000 80 chr14:75760917-75760997 1.0000 80 chr22:22617303-22617383 1.0000 80 chr6:157939870-157939950 1.0000 80 chr6:34992701-34992781 1.0000 80 chr19:49181591-49181671 1.0000 80 chr19:42721893-42721973 1.0000 80 chr20:32767657-32767737 1.0000 80 chr8:102039733-102039813 1.0000 80 chr15:41805953-41806033 1.0000 80 chr5:137800783-137800863 1.0000 80 chr4:40533422-40533502 1.0000 80 chr8:27805996-27806076 1.0000 80 chr12:123518297-12351837 1.0000 80 chr17:72711381-72711461 1.0000 80 chr3:48594514-48594594 1.0000 80 chr2:9282927-9283007 1.0000 80 chr11:44569754-44569834 1.0000 80 chr1:9360315-9360395 1.0000 80 chr6:3251797-3251877 1.0000 80 chr1:242161975-242162055 1.0000 80 chr3:122221170-122221250 1.0000 80 chr2:46172591-46172671 1.0000 80 chr6:74099024-74099104 1.0000 80 chr11:76758770-76758850 1.0000 80 chr1:33168780-33168860 1.0000 80 chr10:2357321-2357401 1.0000 80 chr22:50628922-50629002 1.0000 80 chr12:125534188-12553426 1.0000 80 chr20:36013252-36013332 1.0000 80 chr10:64576361-64576441 1.0000 80 chr16:68806172-68806252 1.0000 80 chr8:22432001-22432081 1.0000 80 chr10:13188542-13188622 1.0000 80 chr6:7107086-7107166 1.0000 80 chr19:13068251-13068331 1.0000 80 chr19:33161049-33161129 1.0000 80 chrX:14083175-14083255 1.0000 80 chr9:33165901-33165981 1.0000 80 chr1:109756498-109756578 1.0000 80 chr20:49347610-49347690 1.0000 80 chr8:103768511-103768591 1.0000 80 chr5:74807668-74807748 1.0000 80 chr2:8453229-8453309 1.0000 80 chr6:56372481-56372561 1.0000 80 chr11:62366790-62366870 1.0000 80 chr1:6453728-6453808 1.0000 80 chr20:55685468-55685548 1.0000 80 chr1:245163140-245163220 1.0000 80 chr4:2397437-2397517 1.0000 80 chr13:52158457-52158537 1.0000 80 chr10:121191079-12119115 1.0000 80 chr17:45266902-45266982 1.0000 80 chr8:56765866-56765946 1.0000 80 chr17:58217327-58217407 1.0000 80 chr1:185121491-185121571 1.0000 80 chr1:228646299-228646379 1.0000 80 chr10:48332221-48332301 1.0000 80 chr1:21023467-21023547 1.0000 80 chr1:154929930-154930010 1.0000 80 chr16:88298671-88298751 1.0000 80 chr2:27273678-27273758 1.0000 80 chr14:50470172-50470252 1.0000 80 chr13:99161874-99161954 1.0000 80 chr7:1781914-1781994 1.0000 80 chr9:139378158-139378238 1.0000 80 chr16:21531497-21531577 1.0000 80 chr9:132641529-132641609 1.0000 80 chr12:108297570-10829765 1.0000 80 chr19:50169116-50169196 1.0000 80 chr1:43418284-43418364 1.0000 80 chr7:99841153-99841233 1.0000 80 chr12:68759122-68759202 1.0000 80 chr3:126108294-126108374 1.0000 80 chr3:47913032-47913112 1.0000 80 chr10:73291478-73291558 1.0000 80 chr19:13076233-13076313 1.0000 80 chr1:178986328-178986408 1.0000 80 chr2:187597721-187597801 1.0000 80 chr12:132076850-13207693 1.0000 80 chr1:84971881-84971961 1.0000 80 chr1:185014359-185014439 1.0000 80 chr2:219157289-219157369 1.0000 80 chr11:862210-862290 1.0000 80 chr2:69664182-69664262 1.0000 80 chr2:16931588-16931668 1.0000 80 chr12:56523128-56523208 1.0000 80 chr6:107831390-107831470 1.0000 80 chr19:11590476-11590556 1.0000 80 chr2:240216535-240216615 1.0000 80 chr8:37446997-37447077 1.0000 80 chr20:61196085-61196165 1.0000 80 chr20:52682351-52682431 1.0000 80 chr17:19281501-19281581 1.0000 80 chr3:49208843-49208923 1.0000 80 chr17:8199062-8199142 1.0000 80 chr6:158402591-158402671 1.0000 80 chr17:60501140-60501220 1.0000 80 chr9:139839183-139839263 1.0000 80 chr2:218692428-218692508 1.0000 80 chr19:17443622-17443702 1.0000 80 chr9:108210297-108210377 1.0000 80 chr2:10442658-10442738 1.0000 80 chr22:21213129-21213209 1.0000 80 chr22:22378285-22378365 1.0000 80 chr7:157322637-157322717 1.0000 80 chr4:10020863-10020943 1.0000 80 chr6:2953064-2953144 1.0000 80 chr11:13689778-13689858 1.0000 80 chr1:208357810-208357890 1.0000 80 chr19:1940735-1940815 1.0000 80 chr14:105948397-10594847 1.0000 80 chr9:131058989-131059069 1.0000 80 chr17:73092335-73092415 1.0000 80 chr17:41869177-41869257 1.0000 80 chr3:38495848-38495928 1.0000 80 chr20:23113324-23113404 1.0000 80 chr13:115079748-11507982 1.0000 80 chr17:2296815-2296895 1.0000 80 chr2:61035730-61035810 1.0000 80 chr4:40518018-40518098 1.0000 80 chr7:156195085-156195165 1.0000 80 chr11:112160861-11216094 1.0000 80 chr19:1633102-1633182 1.0000 80 chr1:43736191-43736271 1.0000 80 chr1:2144224-2144304 1.0000 80 chr19:14202410-14202490 1.0000 80 chr11:114165849-11416592 1.0000 80 chr1:207193571-207193651 1.0000 80 chr19:50878129-50878209 1.0000 80 chr2:72317633-72317713 1.0000 80 chr15:96900507-96900587 1.0000 80 chr1:32014326-32014406 1.0000 80 chr11:82868816-82868896 1.0000 80 chr10:43133558-43133638 1.0000 80 chr16:34429846-34429926 1.0000 80 chr17:73236876-73236956 1.0000 80 chr3:171164774-171164854 1.0000 80 chr16:1728122-1728202 1.0000 80 chr9:114654531-114654611 1.0000 80 chr3:13054680-13054760 1.0000 80 chr12:656281-656361 1.0000 80 chr7:130873548-130873628 1.0000 80 chr5:176853318-176853398 1.0000 80 chr10:72409499-72409579 1.0000 80 chr3:152568124-152568204 1.0000 80 chr19:51945226-51945306 1.0000 80 chr4:123638138-123638218 1.0000 80 chr14:75535991-75536071 1.0000 80 chr9:132168793-132168873 1.0000 80 chr19:39138179-39138259 1.0000 80 chr2:70944861-70944941 1.0000 80 chr9:138863909-138863989 1.0000 80 chr1:91966292-91966372 1.0000 80 chrX:47518461-47518541 1.0000 80 chr7:50602448-50602528 1.0000 80 chr10:6186839-6186919 1.0000 80 chr22:50710261-50710341 1.0000 80 chr19:58695164-58695244 1.0000 80 chr5:137800990-137801070 1.0000 80 chr1:1690341-1690421 1.0000 80 chr16:85646777-85646857 1.0000 80 chr3:8671365-8671445 1.0000 80 chr7:1990936-1991016 1.0000 80 chrX:47510452-47510532 1.0000 80 chr22:21132194-21132274 1.0000 80 chr10:43601112-43601192 1.0000 80 chr8:91592552-91592632 1.0000 80 chr1:159894366-159894446 1.0000 80 chr5:133561912-133561992 1.0000 80 chr19:47839106-47839186 1.0000 80 chr18:8913743-8913823 1.0000 80 chr5:148985722-148985802 1.0000 80 chr16:75543456-75543536 1.0000 80 chr16:11836798-11836878 1.0000 80 chr19:14185101-14185181 1.0000 80 chr9:38068866-38068946 1.0000 80 chr7:150725238-150725318 1.0000 80 chr7:33102795-33102875 1.0000 80 chr2:20850880-20850960 1.0000 80 chr17:43394632-43394712 1.0000 80 chr1:159047112-159047192 1.0000 80 chr19:17001412-17001492 1.0000 80 chr3:157218149-157218229 1.0000 80 chr14:74226951-74227031 1.0000 80 chr15:31507791-31507871 1.0000 80 chr19:12917633-12917713 1.0000 80 chr19:38795744-38795824 1.0000 80 chr11:102980072-10298015 1.0000 80 chr16:29302359-29302439 1.0000 80 chr7:1894870-1894950 1.0000 80 chr6:139456100-139456180 1.0000 80 chr1:27339479-27339559 1.0000 80 chr10:73620844-73620924 1.0000 80 chr1:94511280-94511360 1.0000 80 chr5:125850007-125850087 1.0000 80 chr11:59325038-59325118 1.0000 80 chr2:46656222-46656302 1.0000 80 chr3:13579492-13579572 1.0000 80 chr19:8578745-8578825 1.0000 80 chr1:212731757-212731837 1.0000 80 chr7:676136-676216 1.0000 80 chr19:12949182-12949262 1.0000 80 chr1:228361864-228361944 1.0000 80 chr19:42347603-42347683 1.0000 80 chr12:94306237-94306317 1.0000 80 chr5:176981652-176981732 1.0000 80 chr2:10394365-10394445 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_KLF1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/KLF1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.19 C 0.308 G 0.304 T 0.198 Background letter frequencies (from file dataset with add-one prior applied): A 0.19 C 0.308 G 0.304 T 0.198 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CCMCRCCC MEME-1 width = 8 sites = 97 llr = 769 E-value = 8.2e-061 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCMCRCCC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :17:6::: pos.-specific C 993a:aaa probability G ::::3::: matrix T 1:::1::: bits 2.4 2.2 1.9 1.7 * *** Relative 1.4 * * *** Entropy 1.2 **** *** (11.4 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCACACCC consensus C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCMCRCCC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:42347603-42347683 5 3.08e-05 CCGA CCACACCC CACCCCACCC chr7:1894870-1894950 54 3.08e-05 cggttgcggg ccacaccc tagggttctc chr7:150725238-150725318 58 3.08e-05 GCCAGTCGGG CCACACCC TTTGGACGTC chr16:75543456-75543536 20 3.08e-05 CGATGTGAGA CCACACCC CGGACTCCTG chr5:148985722-148985802 41 3.08e-05 GGTTTCACGG CCACACCC AAGCTATCTC chr18:8913743-8913823 13 3.08e-05 tagcccggcg ccacaccc tgggcctggt chr1:159894366-159894446 37 3.08e-05 ACCCCCACGA CCACACCC TGGGCCGTTA chr4:123638138-123638218 3 3.08e-05 AA CCACACCC TCACTCACCG chr10:72409499-72409579 49 3.08e-05 ggcaaggtga ccacaccc tgactgagtg chr3:13054680-13054760 69 3.08e-05 CACAGCCTGA CCACACCC CAGG chr9:114654531-114654611 59 3.08e-05 CTCCCCTGGA CCACACCC ACATATATAA chr1:207193571-207193651 25 3.08e-05 ACAGAAACCG CCACACCC ACACCTCACA chr2:61035730-61035810 15 3.08e-05 gcatgtgcgg ccacaccc tgtggctcct chr7:157322637-157322717 37 3.08e-05 aagctagacg ccacaccc tcctgtggTA chr12:56523128-56523208 25 3.08e-05 CCTCGGCCGG CCACACCC TTTTCCGGAC chr2:16931588-16931668 24 3.08e-05 catctgtgaa ccacaccc taatcttctc chr1:43418284-43418364 49 3.08e-05 GCTGTGAGGG CCACACCC AAGTTATCAC chr13:99161874-99161954 34 3.08e-05 cagttctaga ccacaccc aaaaggccca chr1:154929930-154930010 22 3.08e-05 TCTCCGAGGG CCACACCC CATGCCTGCC chr10:48332221-48332301 51 3.08e-05 TTATAATCAG CCACACCC AGGGTGTAAA chr4:2397437-2397517 64 3.08e-05 GGTGCTACCA CCACACCC AGATAACGG chr11:62366790-62366870 57 3.08e-05 GCAAGGGGGA CCACACCC CCAACACCCC chr10:13188542-13188622 41 3.08e-05 gtgaccctgc ccacaccc tgatctctga chr22:50628922-50629002 2 3.08e-05 G CCACACCC ATGGGGGAAG chr1:33168780-33168860 72 3.08e-05 GGGTTCACGG CCACACCC C chr8:102039733-102039813 17 3.08e-05 ACTCCCCTGG CCACACCC AAGTCTGGAA chr20:32767657-32767737 21 3.08e-05 TGCGGTTTTT CCACACCC TTTAAAGGAA chr19:49181591-49181671 14 3.08e-05 CTTGAACCCA CCACACCC ACTAATAGTA chr8:38226196-38226276 49 3.08e-05 TTGTTGCTGA CCACACCC AGCAACAACA chr18:71815063-71815143 36 3.08e-05 CCGCACGTCG CCACACCC CTTATGCGCA chr19:45198781-45198861 25 3.08e-05 GCACAGGAAG CCACACCC TGAGCAAATA chr1:22179665-22179745 28 3.08e-05 GGGACTAGGG CCACACCC TTCTGCCTCC chr21:15249455-15249535 44 3.08e-05 ggagagagga ccacaccc tattatacaa chr19:38795744-38795824 48 8.01e-05 GTAACAGCGG CCACGCCC TGGGGCGGTG chr9:38068866-38068946 47 8.01e-05 GGGTCCCGGC CCACGCCC GGGGGAGAGC chr16:11836798-11836878 27 8.01e-05 CCCCAACGGG CCACGCCC TGCACCCTAC chr3:8671365-8671445 22 8.01e-05 CTTGTACCGC CCACGCCC ATGGCATTTG chr7:50602448-50602528 13 8.01e-05 GGAATCAAAA CCACGCCC TCTGCAGGCA chr4:10020863-10020943 54 8.01e-05 GGTTTAGCGG CCACGCCC TTGCGTTCCT chr17:8199062-8199142 24 8.01e-05 AAGTTCAGGT CCACGCCC TGCTCGGTGC chr3:47913032-47913112 29 8.01e-05 CCCATGAGCA CCACGCCC TCTTCTTATC chr12:68759122-68759202 39 8.01e-05 CTCTTGGTGA CCACGCCC TTTCCCAGGC chr12:108297570-10829765 36 8.01e-05 ccacgcccag ccacgccc agccacgTTG chr16:21531497-21531577 21 8.01e-05 ACGATGACGG CCACGCCC TTGAGTAGCG chr14:50470172-50470252 58 8.01e-05 ATATCAGCTG CCACGCCC GCGTGGGCGG chr17:58217327-58217407 19 8.01e-05 CTGAAGTGCC CCACGCCC CTCCGCCACC chr19:33161049-33161129 30 8.01e-05 TGTAAACACA CCACGCCC TTAACAAGCA chr1:242161975-242162055 68 8.01e-05 AACCCCACCC CCACGCCC CCCAG chr19:42721893-42721973 24 8.01e-05 GGTGCGACCG CCACGCCC CTTCGGCGCA chr2:86070810-86070890 45 8.01e-05 ATGCACACCC CCACGCCC CTGGTGGCAG chr16:10742454-10742534 23 8.01e-05 gcatgagcca ccacgccc tgccTGCATC chr12:94306237-94306317 58 1.30e-04 GGCTGCCCGG CCCCACCC AAACCAAGAT chr7:676136-676216 62 1.30e-04 GCCCCTCCTG CCCCACCC AGAATGGTCC chr1:91966292-91966372 25 1.30e-04 CGGGAAGAAA CCCCACCC TCTTGCGCAA chr12:132076850-13207693 47 1.30e-04 GCCAACACTG CCCCACCC TTCCGGTGGG chr1:185121491-185121571 39 1.30e-04 AACCATGCCA CCCCACCC Ttggctggaa chr10:121191079-12119115 55 1.30e-04 TGCGGCCGGT CCCCACCC CTGGGAAGGG chr2:8453229-8453309 21 1.30e-04 taagtcaagg ccccaccc ttatgactca chr11:44569754-44569834 60 1.30e-04 gatatgcagg ccccaccc aaaagtggac chr14:75760917-75760997 53 1.30e-04 gcagcgcggc ccccaccc ggcgccgtga chr1:156556925-156557005 1 1.30e-04 . CCCCACCC TATTCTAGGT chr1:208357810-208357890 38 1.50e-04 GACTTACTCA TCACACCC CAGGGCCTCT chr6:74099024-74099104 20 1.50e-04 CTCCCTCAGG TCACACCC GAGGCAAAAA chr17:72711381-72711461 21 1.50e-04 CGCAACCCCC TCACACCC TAATCAGGAA chr1:116915330-116915410 45 1.50e-04 CTGGCTGCAA TCACACCC GAGCGCCAGC chr2:72317633-72317713 64 1.69e-04 tttcctccat caacaccc cttgggcgt chr8:56765866-56765946 46 1.69e-04 AAACAGACAG CAACACCC AAATACAGAT chr1:27339479-27339559 40 2.81e-04 CACGCCCCTG CCCCGCCC TCCTTCTCAG chr2:20850880-20850960 10 2.81e-04 TCACCGCGT CCCCGCCC TGCCTCCCGC chr22:50710261-50710341 36 2.81e-04 TGGCGACCGG CCCCGCCC CTGCGCCTCC chr4:40518018-40518098 44 2.81e-04 AACAGGGCCT CCCCGCCC CCCAGCCCTG chr19:17443622-17443702 31 2.81e-04 TGGATCTGGG CCCCGCCC TCCTGCTCCT chr1:21023467-21023547 61 2.81e-04 ACAGCACAGG CCCCGCCC GTCACGTGCA chrX:14083175-14083255 34 2.81e-04 ATGAGTCACA CCACTCCC TCAATGCAAA chr22:46481755-46481835 27 2.81e-04 GGGAGCCTGA CCCCGCCC TAGGATTCCT chr6:33636876-33636956 61 2.81e-04 ACTACAGGTG CCCCGCCC CAGCTCCTCC chr9:96356610-96356690 5 2.81e-04 AGGG CCCCGCCC AGTCAGCCCC chr1:23854852-23854932 32 3.13e-04 CTGTTCCAGG TCACGCCC TTGTAAAATG chr3:122221170-122221250 44 3.45e-04 gtcatgaggg tcccaccc tgataagact chr4:6695494-6695574 52 3.45e-04 AACCCCACTG TCCCACCC TCTGTGTCAA chr12:49690422-49690502 35 3.45e-04 GTGGTTAGAC TCCCACCC TTGCGCCACC chr11:102980072-10298015 34 3.75e-04 CCCGAGAGGG CAACGCCC ACCGCGCGCC chr19:1633102-1633182 31 3.75e-04 CACTCACAGG CAACGCCC AGGACTCCAG chr8:37446997-37447077 66 3.75e-04 GCTGGGTGTA CAACGCCC TTGGAAA chr5:176981652-176981732 22 4.06e-04 TGAATAAGGT CACCACCC GGAGTTCGCT chr17:73092335-73092415 49 4.06e-04 CGCCCGGCCA CACCACCC TCAGCTATGC chr13:52158457-52158537 33 4.06e-04 CCTCCTCCTT CACCACCC TCCCGGAAGT chr9:131058989-131059069 67 4.25e-04 GGTAACAATC ACACACCC AAACCA chr20:35094018-35094098 70 4.25e-04 CAGCAACCAG ACACACCC AGA chr19:12949182-12949262 42 4.77e-04 GCAGCAGCGC CCCCTCCC GGCCGGCTGC chr7:1990936-1991016 68 4.77e-04 AAGCGCCCTG CCCCTCCC GTCCG chr10:6186839-6186919 8 4.77e-04 TCCCTTT CCCCTCCC Tcgcccgccc chr1:43736191-43736271 51 4.77e-04 CGGACAGAAG CCCCTCCC TTCACAGGAA chr11:13689778-13689858 29 4.77e-04 GGAGTTGGCG CCCCTCCC GCGCGACGGA chr2:10442658-10442738 19 4.77e-04 gcagggctgg cccctccc gggcgccgcc chr11:59325038-59325118 20 5.61e-04 CATGAGACAG TCCCGCCC TGTCAAGGAA chr17:60501140-60501220 33 5.61e-04 CCACCCTTTT TCCCGCCC AGACTCCGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCMCRCCC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:42347603-42347683 3.1e-05 4_[+1]_68 chr7:1894870-1894950 3.1e-05 53_[+1]_19 chr7:150725238-150725318 3.1e-05 57_[+1]_15 chr16:75543456-75543536 3.1e-05 19_[+1]_53 chr5:148985722-148985802 3.1e-05 40_[+1]_32 chr18:8913743-8913823 3.1e-05 12_[+1]_60 chr1:159894366-159894446 3.1e-05 36_[+1]_36 chr4:123638138-123638218 3.1e-05 2_[+1]_70 chr10:72409499-72409579 3.1e-05 48_[+1]_24 chr3:13054680-13054760 3.1e-05 68_[+1]_4 chr9:114654531-114654611 3.1e-05 58_[+1]_14 chr1:207193571-207193651 3.1e-05 24_[+1]_48 chr2:61035730-61035810 3.1e-05 14_[+1]_58 chr7:157322637-157322717 3.1e-05 36_[+1]_36 chr12:56523128-56523208 3.1e-05 24_[+1]_48 chr2:16931588-16931668 3.1e-05 23_[+1]_49 chr1:43418284-43418364 3.1e-05 48_[+1]_24 chr13:99161874-99161954 3.1e-05 33_[+1]_39 chr1:154929930-154930010 3.1e-05 21_[+1]_51 chr10:48332221-48332301 3.1e-05 50_[+1]_22 chr4:2397437-2397517 3.1e-05 63_[+1]_9 chr11:62366790-62366870 3.1e-05 56_[+1]_16 chr10:13188542-13188622 3.1e-05 40_[+1]_32 chr22:50628922-50629002 3.1e-05 1_[+1]_71 chr1:33168780-33168860 3.1e-05 71_[+1]_1 chr8:102039733-102039813 3.1e-05 16_[+1]_56 chr20:32767657-32767737 3.1e-05 20_[+1]_52 chr19:49181591-49181671 3.1e-05 13_[+1]_59 chr8:38226196-38226276 3.1e-05 48_[+1]_24 chr18:71815063-71815143 3.1e-05 35_[+1]_37 chr19:45198781-45198861 3.1e-05 24_[+1]_48 chr1:22179665-22179745 3.1e-05 27_[+1]_45 chr21:15249455-15249535 3.1e-05 43_[+1]_29 chr19:38795744-38795824 8e-05 47_[+1]_25 chr9:38068866-38068946 8e-05 46_[+1]_26 chr16:11836798-11836878 8e-05 26_[+1]_46 chr3:8671365-8671445 8e-05 21_[+1]_51 chr7:50602448-50602528 8e-05 12_[+1]_60 chr4:10020863-10020943 8e-05 53_[+1]_19 chr17:8199062-8199142 8e-05 23_[+1]_49 chr3:47913032-47913112 8e-05 28_[+1]_44 chr12:68759122-68759202 8e-05 38_[+1]_34 chr12:108297570-10829765 8e-05 35_[+1]_37 chr16:21531497-21531577 8e-05 20_[+1]_52 chr14:50470172-50470252 8e-05 57_[+1]_15 chr17:58217327-58217407 8e-05 18_[+1]_54 chr19:33161049-33161129 8e-05 29_[+1]_43 chr1:242161975-242162055 8e-05 67_[+1]_5 chr19:42721893-42721973 8e-05 23_[+1]_49 chr2:86070810-86070890 8e-05 44_[+1]_28 chr16:10742454-10742534 8e-05 22_[+1]_50 chr12:94306237-94306317 0.00013 57_[+1]_15 chr7:676136-676216 0.00013 61_[+1]_11 chr1:91966292-91966372 0.00013 24_[+1]_48 chr12:132076850-13207693 0.00013 46_[+1]_26 chr1:185121491-185121571 0.00013 38_[+1]_34 chr10:121191079-12119115 0.00013 54_[+1]_18 chr2:8453229-8453309 0.00013 20_[+1]_52 chr11:44569754-44569834 0.00013 59_[+1]_13 chr14:75760917-75760997 0.00013 52_[+1]_20 chr1:156556925-156557005 0.00013 [+1]_72 chr1:208357810-208357890 0.00015 37_[+1]_35 chr6:74099024-74099104 0.00015 19_[+1]_53 chr17:72711381-72711461 0.00015 20_[+1]_52 chr1:116915330-116915410 0.00015 44_[+1]_28 chr2:72317633-72317713 0.00017 63_[+1]_9 chr8:56765866-56765946 0.00017 45_[+1]_27 chr1:27339479-27339559 0.00028 39_[+1]_33 chr2:20850880-20850960 0.00028 9_[+1]_63 chr22:50710261-50710341 0.00028 35_[+1]_37 chr4:40518018-40518098 0.00028 43_[+1]_29 chr19:17443622-17443702 0.00028 30_[+1]_42 chr1:21023467-21023547 0.00028 60_[+1]_12 chrX:14083175-14083255 0.00028 33_[+1]_39 chr22:46481755-46481835 0.00028 26_[+1]_46 chr6:33636876-33636956 0.00028 60_[+1]_12 chr9:96356610-96356690 0.00028 4_[+1]_68 chr1:23854852-23854932 0.00031 31_[+1]_41 chr3:122221170-122221250 0.00034 43_[+1]_29 chr4:6695494-6695574 0.00034 51_[+1]_21 chr12:49690422-49690502 0.00034 34_[+1]_38 chr11:102980072-10298015 0.00038 33_[+1]_39 chr19:1633102-1633182 0.00038 30_[+1]_42 chr8:37446997-37447077 0.00038 65_[+1]_7 chr5:176981652-176981732 0.00041 21_[+1]_51 chr17:73092335-73092415 0.00041 48_[+1]_24 chr13:52158457-52158537 0.00041 32_[+1]_40 chr9:131058989-131059069 0.00043 66_[+1]_6 chr20:35094018-35094098 0.00043 69_[+1]_3 chr19:12949182-12949262 0.00048 41_[+1]_31 chr7:1990936-1991016 0.00048 67_[+1]_5 chr10:6186839-6186919 0.00048 7_[+1]_65 chr1:43736191-43736271 0.00048 50_[+1]_22 chr11:13689778-13689858 0.00048 28_[+1]_44 chr2:10442658-10442738 0.00048 18_[+1]_54 chr11:59325038-59325118 0.00056 19_[+1]_53 chr17:60501140-60501220 0.00056 32_[+1]_40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCMCRCCC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCMCRCCC width=8 seqs=97 chr19:42347603-42347683 ( 5) CCACACCC 1 chr7:1894870-1894950 ( 54) CCACACCC 1 chr7:150725238-150725318 ( 58) CCACACCC 1 chr16:75543456-75543536 ( 20) CCACACCC 1 chr5:148985722-148985802 ( 41) CCACACCC 1 chr18:8913743-8913823 ( 13) CCACACCC 1 chr1:159894366-159894446 ( 37) CCACACCC 1 chr4:123638138-123638218 ( 3) CCACACCC 1 chr10:72409499-72409579 ( 49) CCACACCC 1 chr3:13054680-13054760 ( 69) CCACACCC 1 chr9:114654531-114654611 ( 59) CCACACCC 1 chr1:207193571-207193651 ( 25) CCACACCC 1 chr2:61035730-61035810 ( 15) CCACACCC 1 chr7:157322637-157322717 ( 37) CCACACCC 1 chr12:56523128-56523208 ( 25) CCACACCC 1 chr2:16931588-16931668 ( 24) CCACACCC 1 chr1:43418284-43418364 ( 49) CCACACCC 1 chr13:99161874-99161954 ( 34) CCACACCC 1 chr1:154929930-154930010 ( 22) CCACACCC 1 chr10:48332221-48332301 ( 51) CCACACCC 1 chr4:2397437-2397517 ( 64) CCACACCC 1 chr11:62366790-62366870 ( 57) CCACACCC 1 chr10:13188542-13188622 ( 41) CCACACCC 1 chr22:50628922-50629002 ( 2) CCACACCC 1 chr1:33168780-33168860 ( 72) CCACACCC 1 chr8:102039733-102039813 ( 17) CCACACCC 1 chr20:32767657-32767737 ( 21) CCACACCC 1 chr19:49181591-49181671 ( 14) CCACACCC 1 chr8:38226196-38226276 ( 49) CCACACCC 1 chr18:71815063-71815143 ( 36) CCACACCC 1 chr19:45198781-45198861 ( 25) CCACACCC 1 chr1:22179665-22179745 ( 28) CCACACCC 1 chr21:15249455-15249535 ( 44) CCACACCC 1 chr19:38795744-38795824 ( 48) CCACGCCC 1 chr9:38068866-38068946 ( 47) CCACGCCC 1 chr16:11836798-11836878 ( 27) CCACGCCC 1 chr3:8671365-8671445 ( 22) CCACGCCC 1 chr7:50602448-50602528 ( 13) CCACGCCC 1 chr4:10020863-10020943 ( 54) CCACGCCC 1 chr17:8199062-8199142 ( 24) CCACGCCC 1 chr3:47913032-47913112 ( 29) CCACGCCC 1 chr12:68759122-68759202 ( 39) CCACGCCC 1 chr12:108297570-10829765 ( 36) CCACGCCC 1 chr16:21531497-21531577 ( 21) CCACGCCC 1 chr14:50470172-50470252 ( 58) CCACGCCC 1 chr17:58217327-58217407 ( 19) CCACGCCC 1 chr19:33161049-33161129 ( 30) CCACGCCC 1 chr1:242161975-242162055 ( 68) CCACGCCC 1 chr19:42721893-42721973 ( 24) CCACGCCC 1 chr2:86070810-86070890 ( 45) CCACGCCC 1 chr16:10742454-10742534 ( 23) CCACGCCC 1 chr12:94306237-94306317 ( 58) CCCCACCC 1 chr7:676136-676216 ( 62) CCCCACCC 1 chr1:91966292-91966372 ( 25) CCCCACCC 1 chr12:132076850-13207693 ( 47) CCCCACCC 1 chr1:185121491-185121571 ( 39) CCCCACCC 1 chr10:121191079-12119115 ( 55) CCCCACCC 1 chr2:8453229-8453309 ( 21) CCCCACCC 1 chr11:44569754-44569834 ( 60) CCCCACCC 1 chr14:75760917-75760997 ( 53) CCCCACCC 1 chr1:156556925-156557005 ( 1) CCCCACCC 1 chr1:208357810-208357890 ( 38) TCACACCC 1 chr6:74099024-74099104 ( 20) TCACACCC 1 chr17:72711381-72711461 ( 21) TCACACCC 1 chr1:116915330-116915410 ( 45) TCACACCC 1 chr2:72317633-72317713 ( 64) CAACACCC 1 chr8:56765866-56765946 ( 46) CAACACCC 1 chr1:27339479-27339559 ( 40) CCCCGCCC 1 chr2:20850880-20850960 ( 10) CCCCGCCC 1 chr22:50710261-50710341 ( 36) CCCCGCCC 1 chr4:40518018-40518098 ( 44) CCCCGCCC 1 chr19:17443622-17443702 ( 31) CCCCGCCC 1 chr1:21023467-21023547 ( 61) CCCCGCCC 1 chrX:14083175-14083255 ( 34) CCACTCCC 1 chr22:46481755-46481835 ( 27) CCCCGCCC 1 chr6:33636876-33636956 ( 61) CCCCGCCC 1 chr9:96356610-96356690 ( 5) CCCCGCCC 1 chr1:23854852-23854932 ( 32) TCACGCCC 1 chr3:122221170-122221250 ( 44) TCCCACCC 1 chr4:6695494-6695574 ( 52) TCCCACCC 1 chr12:49690422-49690502 ( 35) TCCCACCC 1 chr11:102980072-10298015 ( 34) CAACGCCC 1 chr19:1633102-1633182 ( 31) CAACGCCC 1 chr8:37446997-37447077 ( 66) CAACGCCC 1 chr5:176981652-176981732 ( 22) CACCACCC 1 chr17:73092335-73092415 ( 49) CACCACCC 1 chr13:52158457-52158537 ( 33) CACCACCC 1 chr9:131058989-131059069 ( 67) ACACACCC 1 chr20:35094018-35094098 ( 70) ACACACCC 1 chr19:12949182-12949262 ( 42) CCCCTCCC 1 chr7:1990936-1991016 ( 68) CCCCTCCC 1 chr10:6186839-6186919 ( 8) CCCCTCCC 1 chr1:43736191-43736271 ( 51) CCCCTCCC 1 chr11:13689778-13689858 ( 29) CCCCTCCC 1 chr2:10442658-10442738 ( 19) CCCCTCCC 1 chr11:59325038-59325118 ( 20) TCCCGCCC 1 chr17:60501140-60501220 ( 33) TCCCGCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCMCRCCC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.66019 E= 8.2e-061 -320 151 -1324 -94 -120 157 -1324 -1324 180 14 -1324 -1324 -1324 170 -1324 -1324 163 -1324 16 -146 -1324 170 -1324 -1324 -1324 170 -1324 -1324 -1324 170 -1324 -1324 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCMCRCCC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 97 E= 8.2e-061 0.020619 0.876289 0.000000 0.103093 0.082474 0.917526 0.000000 0.000000 0.659794 0.340206 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.587629 0.000000 0.340206 0.072165 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCMCRCCC MEME-1 regular expression -------------------------------------------------------------------------------- CC[AC]C[AG]CCC -------------------------------------------------------------------------------- Time 5.07 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGYGTGG MEME-2 width = 8 sites = 97 llr = 714 E-value = 6.3e-037 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGYGTGG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::1:::: pos.-specific C :::6:1:1 probability G aaa:a398 matrix T :::4:611 bits 2.4 2.2 1.9 1.7 *** * Relative 1.4 *** * Entropy 1.2 *** * * (10.6 bits) 1.0 *** *** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGCGTGG consensus T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGYGTGG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:10394365-10394445 51 3.09e-05 GGGTGGGGCT GGGTGTGG TCGACTTCTG chr2:46656222-46656302 54 3.09e-05 GAGGCCCCTA GGGTGTGG CAGGGCGGGT chr3:157218149-157218229 53 3.09e-05 TCTACTCAAA GGGTGTGG TCAGGGTGGC chr3:152568124-152568204 31 3.09e-05 CCATAGCCCA GGGTGTGG CTCAGGTCAG chr1:2144224-2144304 64 3.09e-05 TCCCCGCGCA GGGTGTGG CGGGCGTGG chr7:156195085-156195165 42 3.09e-05 gcgccatctt gggtgtgg cTGCAACTCC chr1:208357810-208357890 8 3.09e-05 ATAATGT GGGTGTGG TGTCATTACC chr2:218692428-218692508 25 3.09e-05 tgacaacgat gggtgtgg ctgagttaac chr20:52682351-52682431 43 3.09e-05 AAGATTAGAA GGGTGTGG CCCATGTGTT chr20:61196085-61196165 29 3.09e-05 gggtgtggct gggtgtgg tgtggcgtgg chr6:107831390-107831470 62 3.09e-05 acagtgggca gggtgtgg cccacggaca chr1:178986328-178986408 52 3.09e-05 AGCCCAGAAA GGGTGTGG TCCAACTGCC chr8:103768511-103768591 29 3.09e-05 TCCTGAATCA GGGTGTGG ATGATCTGGT chr8:27805996-27806076 73 3.09e-05 CTGGGCCGAA GGGTGTGG chr4:40533422-40533502 41 3.09e-05 GGGTTGGGTT GGGTGTGG TTGGAGATAA chr19:49181591-49181671 62 3.09e-05 ATcagtgcag gggtgtgg cagccccatt chr1:22623285-22623365 39 3.09e-05 atatgaattt gggtgtgg tggggaaaca chr17:45013226-45013306 40 3.09e-05 TCTGTTATCA GGGTGTGG TCCCCTGTGA chr1:228361864-228361944 34 7.91e-05 ggctcgctgt gggcgtgg ctcgctgtgg chr19:8578745-8578825 7 7.91e-05 CCTGAC GGGCGTGG TCCATTCCGG chr11:59325038-59325118 60 7.91e-05 AAAAAAAAcc gggcgtgg tggctcatgt chr19:12917633-12917713 9 7.91e-05 GAGGGGAG GGGCGTGG TACGGAGGAT chr5:133561912-133561992 52 7.91e-05 TTGACTTTTT GGGCGTGG CTCCCGGAGG chr8:91592552-91592632 55 7.91e-05 cgaagaacaa gggcgtgg tccaagctgg chr10:43601112-43601192 49 7.91e-05 GTGGGAGAGT GGGCGTGG GGACTGAGGT chr3:171164774-171164854 63 7.91e-05 aaaattagtt gggcgtgg tggcgagcgc chr4:40518018-40518098 25 7.91e-05 TGCCTGCCCG GGGCGTGG CAACAGGGCC chr11:13689778-13689858 52 7.91e-05 ACGGACAGCC GGGCGTGG CCCTGGGCGC chr22:21213129-21213209 13 7.91e-05 ACACTAGATA GGGCGTGG CTGCGGGGCG chr17:60501140-60501220 63 7.91e-05 TTCTGAAAGA GGGCGTGG TCCGCAGGAA chr19:11590476-11590556 31 7.91e-05 tggccaggca gggcgtgg cagggcggga chr9:132641529-132641609 39 7.91e-05 AGAGGGGAAG GGGCGTGG TGAGCGGCAG chr2:27273678-27273758 15 7.91e-05 gtagtggata gggcgtgg caatccttag chr17:45266902-45266982 32 7.91e-05 CCAGCAGGCT GGGCGTGG CGTGACAGCG chr10:121191079-12119115 29 7.91e-05 CCCTCCGGAA GGGCGTGG TCCTCTAATG chr11:3986913-3986993 45 7.91e-05 ATTGCAggct gggcgtgg tggcccatgc chr11:61034230-61034310 45 7.91e-05 tgcctatgaa gggcgtgg cacactgcAA chr7:676136-676216 5 1.27e-04 CCAG GGGTGGGG GGTTTCCTGC chr15:31507791-31507871 66 1.27e-04 GACCTAGCCC GGGTGGGG CGAACGA chr9:108210297-108210377 72 1.27e-04 GGGCGCGGAC GGGTGGGG C chr6:7107086-7107166 26 1.27e-04 TTCCATCGCG GGGTGGGG ACACAGTGGC chr2:9282927-9283007 18 1.27e-04 TGCCTTTGGA GGGTGGGG TAACAAGCAG chr12:123518297-12351837 53 1.27e-04 gagatcatat gggtgggg ccctcacaat chr2:242786392-242786472 26 1.27e-04 TGGGGCGCGT GGGTGGGG CGGGAGCGCA chr10:11917937-11918017 28 1.27e-04 TGCCTTTCAG GGGTGGGG CTGAATGAAC chr20:35094018-35094098 15 1.27e-04 TCTGGAGGCT GGGTGGGG ACTGAGTCAC chr19:12949182-12949262 8 2.00e-04 AGTGCGC GGGCGGGG CCTGGCTCGC chr22:50710261-50710341 1 2.00e-04 . gggcgggg cgggAGTCGG chr15:96900507-96900587 50 2.00e-04 CGAAATTCCC GGGCGGGG CGGAGGCTGG chr11:112160861-11216094 70 2.00e-04 GCGTgccggg gggcgggg acg chr13:115079748-11507982 53 2.00e-04 GGCACTTCCG GGGCGGGG CGGGCACGCA chr2:219157289-219157369 15 2.00e-04 cggcctcgtg gggcgggg cctcagggcg chr14:50470172-50470252 8 2.00e-04 AGCTGCA gggcgggg cccccggggg chr16:68806172-68806252 24 2.00e-04 ATGCATGGAA GGGCGGGG CTCCATTAGA chr1:33168780-33168860 34 2.00e-04 CTGTCGTGAA GGGCGGGG CAGGGCGCGG chr3:51705064-51705144 70 2.00e-04 CATGGAGACG GGGCGGGG CAG chr12:656281-656361 41 2.52e-04 CGGGAAGAGC gggcgttg ctgggcgttg chr17:73236876-73236956 50 2.52e-04 AGCCAGGAGA GGGCGTTG CTTGTGCTGC chr17:41869177-41869257 52 2.52e-04 gttcaggaat gggcgttg gctgcacata chr17:19281501-19281581 29 2.52e-04 CTACGTGCAG GGGCGTTG CCTTCCATTC chr1:185014359-185014439 33 2.52e-04 GCCGTCATCC GGGCGTTG CCCGGGGGCT chr5:74807668-74807748 10 2.52e-04 TTCTGGGAA GGGCGTTG GTCCGTCGCT chr6:126193461-126193541 45 2.52e-04 GCTTATGGAA GGGCGTTG GCCAGAAGCT chr16:85646777-85646857 38 2.72e-04 CGTTGCGTTT GGGTGTGT CCTCGGCGGC chr19:14202410-14202490 47 2.72e-04 AACCCCCTGG GGGTGTGT GGGTGGGTGA chr2:240216535-240216615 64 2.72e-04 CTAAGGGGGT GGGTGTGT GGGAGGCCC chr1:9360315-9360395 32 2.72e-04 ttcctcattt gggtgtgt tactccagcc chr5:134722838-134722918 39 2.72e-04 TAGCTTTCCT GGGTGTGT CACCTAAGTT chr20:55685468-55685548 25 3.04e-04 TCTTCCGGCT GGGCGTGT GCGGGGCGCT chrX:47510452-47510532 8 3.33e-04 AGCCGGC GGGAGTGG GTCGGACTGG chr11:82868816-82868896 39 3.33e-04 CTGGGGGGGA GGGAGTGG GGAGGATAAA chr11:862210-862290 70 3.33e-04 CCCTCCTAGA GGGAGTGG TTC chr17:72711381-72711461 44 3.65e-04 AGGAATGAGT GGGTGTGC AGAGGGTTAT chr15:41805953-41806033 64 3.65e-04 CCACTTACAG GGGTGTGC TGCCGCTGG chr22:46481755-46481835 50 3.65e-04 TTCCTGGAGT GGGTGTGC CCACGCTTCC chr9:132168793-132168873 36 4.13e-04 cctccctgca gggcgtgc ccggtgactc chr5:176853318-176853398 39 4.13e-04 TCGGCCTCCT GGGCGTGC CCCAGAGTAC chr10:2357321-2357401 39 4.13e-04 CGGAAGGACT GGGCGTGC CCGGCGTGCT chr19:38795744-38795824 58 4.92e-04 CCACGCCCTG GGGCGGTG GCCTGTGCAG chr7:33102795-33102875 53 4.92e-04 GGCTGGAGAG GGGCGGTG TCCCTTCCGC chr16:1728122-1728202 53 4.92e-04 TGGGCGTGAG GGGCGGTG GCCGCGCTGA chr17:40671201-40671281 55 4.92e-04 GCCAAGAAAA GGGCGGTG CCCCCACAGG chr19:14185101-14185181 36 5.71e-04 TGTGTTTAAG GGGTGCGG CCGGCCTTTC chr2:187597721-187597801 54 5.71e-04 ttcctggtga gggtgggt cctctcctgc chr1:228646299-228646379 37 5.71e-04 AGCGGTTGCC GGGTGCGG CCGAATCTGA chr6:139456100-139456180 57 6.94e-04 GTCACCTGGT GGGCGCGG CCAGGCCGAA chr3:38495848-38495928 27 6.94e-04 GGTAAGAACT GGGCGCGG CGCGGGGACG chr19:13076233-13076313 69 6.94e-04 CGGGTGTCCT GGGCGCGG CCGC chr1:109756498-109756578 22 6.94e-04 TGCGCAGGAA GGGCGGGT CAGCGCGCCG chr19:13068251-13068331 43 6.94e-04 TATTTTTgtc gggcgcgg tggctcacgc chr16:30493857-30493937 11 6.94e-04 gagggggcaa gggcgggt ggaagtgata chr4:6695494-6695574 14 7.53e-04 CACATGAATG GGGAGGGG CAGGACTTCC chr1:212731757-212731837 30 8.97e-04 CCTTCACAGC GGGCGGGC ACCGTCCCTC chr17:43394632-43394712 64 8.97e-04 GGAGATCGCT GGGCGGGC GGACTGACA chr1:1690341-1690421 45 9.87e-04 TCAGGTGGAA GGGCGTTC CCTGCCTCCT chr22:21132194-21132274 37 1.02e-03 CTTAAATAAA GGGAGTGC CCCTCAGGTC chr14:105948397-10594847 10 1.15e-03 TGGAAACCG GGGCGGTT GTTGCTACTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGYGTGG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:10394365-10394445 3.1e-05 50_[+2]_22 chr2:46656222-46656302 3.1e-05 53_[+2]_19 chr3:157218149-157218229 3.1e-05 52_[+2]_20 chr3:152568124-152568204 3.1e-05 30_[+2]_42 chr1:2144224-2144304 3.1e-05 63_[+2]_9 chr7:156195085-156195165 3.1e-05 41_[+2]_31 chr1:208357810-208357890 3.1e-05 7_[+2]_65 chr2:218692428-218692508 3.1e-05 24_[+2]_48 chr20:52682351-52682431 3.1e-05 42_[+2]_30 chr20:61196085-61196165 3.1e-05 28_[+2]_44 chr6:107831390-107831470 3.1e-05 61_[+2]_11 chr1:178986328-178986408 3.1e-05 51_[+2]_21 chr8:103768511-103768591 3.1e-05 28_[+2]_44 chr8:27805996-27806076 3.1e-05 72_[+2] chr4:40533422-40533502 3.1e-05 40_[+2]_32 chr19:49181591-49181671 3.1e-05 61_[+2]_11 chr1:22623285-22623365 3.1e-05 38_[+2]_34 chr17:45013226-45013306 3.1e-05 39_[+2]_33 chr1:228361864-228361944 7.9e-05 33_[+2]_39 chr19:8578745-8578825 7.9e-05 6_[+2]_66 chr11:59325038-59325118 7.9e-05 59_[+2]_13 chr19:12917633-12917713 7.9e-05 8_[+2]_64 chr5:133561912-133561992 7.9e-05 51_[+2]_21 chr8:91592552-91592632 7.9e-05 54_[+2]_18 chr10:43601112-43601192 7.9e-05 48_[+2]_24 chr3:171164774-171164854 7.9e-05 62_[+2]_10 chr4:40518018-40518098 7.9e-05 24_[+2]_48 chr11:13689778-13689858 7.9e-05 51_[+2]_21 chr22:21213129-21213209 7.9e-05 12_[+2]_60 chr17:60501140-60501220 7.9e-05 62_[+2]_10 chr19:11590476-11590556 7.9e-05 30_[+2]_42 chr9:132641529-132641609 7.9e-05 38_[+2]_34 chr2:27273678-27273758 7.9e-05 14_[+2]_58 chr17:45266902-45266982 7.9e-05 31_[+2]_41 chr10:121191079-12119115 7.9e-05 28_[+2]_44 chr11:3986913-3986993 7.9e-05 44_[+2]_28 chr11:61034230-61034310 7.9e-05 44_[+2]_28 chr7:676136-676216 0.00013 4_[+2]_68 chr15:31507791-31507871 0.00013 65_[+2]_7 chr9:108210297-108210377 0.00013 71_[+2]_1 chr6:7107086-7107166 0.00013 25_[+2]_47 chr2:9282927-9283007 0.00013 17_[+2]_55 chr12:123518297-12351837 0.00013 52_[+2]_20 chr2:242786392-242786472 0.00013 25_[+2]_47 chr10:11917937-11918017 0.00013 27_[+2]_45 chr20:35094018-35094098 0.00013 14_[+2]_58 chr19:12949182-12949262 0.0002 7_[+2]_65 chr22:50710261-50710341 0.0002 [+2]_72 chr15:96900507-96900587 0.0002 49_[+2]_23 chr11:112160861-11216094 0.0002 69_[+2]_3 chr13:115079748-11507982 0.0002 52_[+2]_20 chr2:219157289-219157369 0.0002 14_[+2]_58 chr14:50470172-50470252 0.0002 7_[+2]_65 chr16:68806172-68806252 0.0002 23_[+2]_49 chr1:33168780-33168860 0.0002 33_[+2]_39 chr3:51705064-51705144 0.0002 69_[+2]_3 chr12:656281-656361 0.00025 40_[+2]_32 chr17:73236876-73236956 0.00025 49_[+2]_23 chr17:41869177-41869257 0.00025 51_[+2]_21 chr17:19281501-19281581 0.00025 28_[+2]_44 chr1:185014359-185014439 0.00025 32_[+2]_40 chr5:74807668-74807748 0.00025 9_[+2]_63 chr6:126193461-126193541 0.00025 44_[+2]_28 chr16:85646777-85646857 0.00027 37_[+2]_35 chr19:14202410-14202490 0.00027 46_[+2]_26 chr2:240216535-240216615 0.00027 63_[+2]_9 chr1:9360315-9360395 0.00027 31_[+2]_41 chr5:134722838-134722918 0.00027 38_[+2]_34 chr20:55685468-55685548 0.0003 24_[+2]_48 chrX:47510452-47510532 0.00033 7_[+2]_65 chr11:82868816-82868896 0.00033 38_[+2]_34 chr11:862210-862290 0.00033 69_[+2]_3 chr17:72711381-72711461 0.00036 43_[+2]_29 chr15:41805953-41806033 0.00036 63_[+2]_9 chr22:46481755-46481835 0.00036 49_[+2]_23 chr9:132168793-132168873 0.00041 35_[+2]_37 chr5:176853318-176853398 0.00041 38_[+2]_34 chr10:2357321-2357401 0.00041 38_[+2]_34 chr19:38795744-38795824 0.00049 57_[+2]_15 chr7:33102795-33102875 0.00049 52_[+2]_20 chr16:1728122-1728202 0.00049 52_[+2]_20 chr17:40671201-40671281 0.00049 54_[+2]_18 chr19:14185101-14185181 0.00057 35_[+2]_37 chr2:187597721-187597801 0.00057 53_[+2]_19 chr1:228646299-228646379 0.00057 36_[+2]_36 chr6:139456100-139456180 0.00069 56_[+2]_16 chr3:38495848-38495928 0.00069 26_[+2]_46 chr19:13076233-13076313 0.00069 68_[+2]_4 chr1:109756498-109756578 0.00069 21_[+2]_51 chr19:13068251-13068331 0.00069 42_[+2]_30 chr16:30493857-30493937 0.00069 10_[+2]_62 chr4:6695494-6695574 0.00075 13_[+2]_59 chr1:212731757-212731837 0.0009 29_[+2]_43 chr17:43394632-43394712 0.0009 63_[+2]_9 chr1:1690341-1690421 0.00099 44_[+2]_28 chr22:21132194-21132274 0.001 36_[+2]_36 chr14:105948397-10594847 0.0011 9_[+2]_63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGYGTGG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGYGTGG width=8 seqs=97 chr2:10394365-10394445 ( 51) GGGTGTGG 1 chr2:46656222-46656302 ( 54) GGGTGTGG 1 chr3:157218149-157218229 ( 53) GGGTGTGG 1 chr3:152568124-152568204 ( 31) GGGTGTGG 1 chr1:2144224-2144304 ( 64) GGGTGTGG 1 chr7:156195085-156195165 ( 42) GGGTGTGG 1 chr1:208357810-208357890 ( 8) GGGTGTGG 1 chr2:218692428-218692508 ( 25) GGGTGTGG 1 chr20:52682351-52682431 ( 43) GGGTGTGG 1 chr20:61196085-61196165 ( 29) GGGTGTGG 1 chr6:107831390-107831470 ( 62) GGGTGTGG 1 chr1:178986328-178986408 ( 52) GGGTGTGG 1 chr8:103768511-103768591 ( 29) GGGTGTGG 1 chr8:27805996-27806076 ( 73) GGGTGTGG 1 chr4:40533422-40533502 ( 41) GGGTGTGG 1 chr19:49181591-49181671 ( 62) GGGTGTGG 1 chr1:22623285-22623365 ( 39) GGGTGTGG 1 chr17:45013226-45013306 ( 40) GGGTGTGG 1 chr1:228361864-228361944 ( 34) GGGCGTGG 1 chr19:8578745-8578825 ( 7) GGGCGTGG 1 chr11:59325038-59325118 ( 60) GGGCGTGG 1 chr19:12917633-12917713 ( 9) GGGCGTGG 1 chr5:133561912-133561992 ( 52) GGGCGTGG 1 chr8:91592552-91592632 ( 55) GGGCGTGG 1 chr10:43601112-43601192 ( 49) GGGCGTGG 1 chr3:171164774-171164854 ( 63) GGGCGTGG 1 chr4:40518018-40518098 ( 25) GGGCGTGG 1 chr11:13689778-13689858 ( 52) GGGCGTGG 1 chr22:21213129-21213209 ( 13) GGGCGTGG 1 chr17:60501140-60501220 ( 63) GGGCGTGG 1 chr19:11590476-11590556 ( 31) GGGCGTGG 1 chr9:132641529-132641609 ( 39) GGGCGTGG 1 chr2:27273678-27273758 ( 15) GGGCGTGG 1 chr17:45266902-45266982 ( 32) GGGCGTGG 1 chr10:121191079-12119115 ( 29) GGGCGTGG 1 chr11:3986913-3986993 ( 45) GGGCGTGG 1 chr11:61034230-61034310 ( 45) GGGCGTGG 1 chr7:676136-676216 ( 5) GGGTGGGG 1 chr15:31507791-31507871 ( 66) GGGTGGGG 1 chr9:108210297-108210377 ( 72) GGGTGGGG 1 chr6:7107086-7107166 ( 26) GGGTGGGG 1 chr2:9282927-9283007 ( 18) GGGTGGGG 1 chr12:123518297-12351837 ( 53) GGGTGGGG 1 chr2:242786392-242786472 ( 26) GGGTGGGG 1 chr10:11917937-11918017 ( 28) GGGTGGGG 1 chr20:35094018-35094098 ( 15) GGGTGGGG 1 chr19:12949182-12949262 ( 8) GGGCGGGG 1 chr22:50710261-50710341 ( 1) GGGCGGGG 1 chr15:96900507-96900587 ( 50) GGGCGGGG 1 chr11:112160861-11216094 ( 70) GGGCGGGG 1 chr13:115079748-11507982 ( 53) GGGCGGGG 1 chr2:219157289-219157369 ( 15) GGGCGGGG 1 chr14:50470172-50470252 ( 8) GGGCGGGG 1 chr16:68806172-68806252 ( 24) GGGCGGGG 1 chr1:33168780-33168860 ( 34) GGGCGGGG 1 chr3:51705064-51705144 ( 70) GGGCGGGG 1 chr12:656281-656361 ( 41) GGGCGTTG 1 chr17:73236876-73236956 ( 50) GGGCGTTG 1 chr17:41869177-41869257 ( 52) GGGCGTTG 1 chr17:19281501-19281581 ( 29) GGGCGTTG 1 chr1:185014359-185014439 ( 33) GGGCGTTG 1 chr5:74807668-74807748 ( 10) GGGCGTTG 1 chr6:126193461-126193541 ( 45) GGGCGTTG 1 chr16:85646777-85646857 ( 38) GGGTGTGT 1 chr19:14202410-14202490 ( 47) GGGTGTGT 1 chr2:240216535-240216615 ( 64) GGGTGTGT 1 chr1:9360315-9360395 ( 32) GGGTGTGT 1 chr5:134722838-134722918 ( 39) GGGTGTGT 1 chr20:55685468-55685548 ( 25) GGGCGTGT 1 chrX:47510452-47510532 ( 8) GGGAGTGG 1 chr11:82868816-82868896 ( 39) GGGAGTGG 1 chr11:862210-862290 ( 70) GGGAGTGG 1 chr17:72711381-72711461 ( 44) GGGTGTGC 1 chr15:41805953-41806033 ( 64) GGGTGTGC 1 chr22:46481755-46481835 ( 50) GGGTGTGC 1 chr9:132168793-132168873 ( 36) GGGCGTGC 1 chr5:176853318-176853398 ( 39) GGGCGTGC 1 chr10:2357321-2357401 ( 39) GGGCGTGC 1 chr19:38795744-38795824 ( 58) GGGCGGTG 1 chr7:33102795-33102875 ( 53) GGGCGGTG 1 chr16:1728122-1728202 ( 53) GGGCGGTG 1 chr17:40671201-40671281 ( 55) GGGCGGTG 1 chr19:14185101-14185181 ( 36) GGGTGCGG 1 chr2:187597721-187597801 ( 54) GGGTGGGT 1 chr1:228646299-228646379 ( 37) GGGTGCGG 1 chr6:139456100-139456180 ( 57) GGGCGCGG 1 chr3:38495848-38495928 ( 27) GGGCGCGG 1 chr19:13076233-13076313 ( 69) GGGCGCGG 1 chr1:109756498-109756578 ( 22) GGGCGGGT 1 chr19:13068251-13068331 ( 43) GGGCGCGG 1 chr16:30493857-30493937 ( 11) GGGCGGGT 1 chr4:6695494-6695574 ( 14) GGGAGGGG 1 chr1:212731757-212731837 ( 30) GGGCGGGC 1 chr17:43394632-43394712 ( 64) GGGCGGGC 1 chr1:1690341-1690421 ( 45) GGGCGTTC 1 chr22:21132194-21132274 ( 37) GGGAGTGC 1 chr14:105948397-10594847 ( 10) GGGCGGTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGYGTGG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.14407 E= 6.3e-037 -1324 -1324 172 -1324 -1324 -1324 172 -1324 -1324 -1324 172 -1324 -188 85 -1324 98 -1324 -1324 172 -1324 -1324 -232 2 167 -1324 -1324 151 -56 -1324 -158 138 -94 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGYGTGG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 97 E= 6.3e-037 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.051546 0.556701 0.000000 0.391753 0.000000 0.000000 1.000000 0.000000 0.000000 0.061856 0.309278 0.628866 0.000000 0.000000 0.865979 0.134021 0.000000 0.103093 0.793814 0.103093 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGYGTGG MEME-2 regular expression -------------------------------------------------------------------------------- GGG[CT]G[TG]GG -------------------------------------------------------------------------------- Time 8.76 secs. ******************************************************************************** ******************************************************************************** MOTIF WHATTTTW MEME-3 width = 8 sites = 14 llr = 135 E-value = 9.2e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif WHATTTTW MEME-3 Description -------------------------------------------------------------------------------- Simplified A 449:::34 pos.-specific C :3:::::: probability G :::::::: matrix T 641aaa76 bits 2.4 *** 2.2 *** 1.9 **** 1.7 **** Relative 1.4 * ****** Entropy 1.2 * ****** (13.9 bits) 1.0 * ****** 0.7 * ****** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TAATTTTT consensus AT AA sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WHATTTTW MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:27273678-27273758 70 2.18e-06 acTTCGTCTG TAATTTTT AAC chr5:125850007-125850087 21 4.44e-06 tgctaatgca ttattttt agcatattat chr7:157322637-157322717 63 4.44e-06 TATGTAGGAC TTATTTTT TCCTGTACGG chr19:13068251-13068331 32 8.70e-06 TTAAAAATAC ATATTTTT gtcgggcgcg chr7:130873548-130873628 27 1.85e-05 TCCAACCACA AAATTTTA AAAGTCATCT chr9:33165901-33165981 68 2.27e-05 TTGACTGGTT ATATTTTA GCCCT chr16:68806172-68806252 60 2.27e-05 GCTTCCTCTC TAATTTAT GGTTTGTCCC chr3:13579492-13579572 45 2.82e-05 CTGCTGGCTA ACATTTTT GCAATGGGTG chr10:73291478-73291558 40 2.82e-05 GGAAGTGGTG ACATTTTT GACTCCTACA chr10:74003982-74004062 49 2.82e-05 AGATTTTTAG TTATTTAT TTACTTTAAG chr22:22617303-22617383 52 3.57e-05 tcaattatcc tcatttta cttaaagatc chr11:59325038-59325118 36 4.83e-05 CCTGTCAAGG AAATTTAA AAGAAAAAAA chr2:8453229-8453309 36 5.68e-05 cccttatgac tcatttaa ccttaattac chr12:94306237-94306317 1 6.22e-05 . TATTTTTT CCCTCCCCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WHATTTTW MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:27273678-27273758 2.2e-06 69_[+3]_3 chr5:125850007-125850087 4.4e-06 20_[+3]_52 chr7:157322637-157322717 4.4e-06 62_[+3]_10 chr19:13068251-13068331 8.7e-06 31_[+3]_41 chr7:130873548-130873628 1.8e-05 26_[+3]_46 chr9:33165901-33165981 2.3e-05 67_[+3]_5 chr16:68806172-68806252 2.3e-05 59_[+3]_13 chr3:13579492-13579572 2.8e-05 44_[+3]_28 chr10:73291478-73291558 2.8e-05 39_[+3]_33 chr10:74003982-74004062 2.8e-05 48_[+3]_24 chr22:22617303-22617383 3.6e-05 51_[+3]_21 chr11:59325038-59325118 4.8e-05 35_[+3]_37 chr2:8453229-8453309 5.7e-05 35_[+3]_37 chr12:94306237-94306317 6.2e-05 [+3]_72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WHATTTTW MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WHATTTTW width=8 seqs=14 chr2:27273678-27273758 ( 70) TAATTTTT 1 chr5:125850007-125850087 ( 21) TTATTTTT 1 chr7:157322637-157322717 ( 63) TTATTTTT 1 chr19:13068251-13068331 ( 32) ATATTTTT 1 chr7:130873548-130873628 ( 27) AAATTTTA 1 chr9:33165901-33165981 ( 68) ATATTTTA 1 chr16:68806172-68806252 ( 60) TAATTTAT 1 chr3:13579492-13579572 ( 45) ACATTTTT 1 chr10:73291478-73291558 ( 40) ACATTTTT 1 chr10:74003982-74004062 ( 49) TTATTTAT 1 chr22:22617303-22617383 ( 52) TCATTTTA 1 chr11:59325038-59325118 ( 36) AAATTTAA 1 chr2:8453229-8453309 ( 36) TCATTTAA 1 chr12:94306237-94306317 ( 1) TATTTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WHATTTTW MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.9532 E= 9.2e+002 118 -1045 -1045 153 91 -11 -1045 85 229 -1045 -1045 -147 -1045 -1045 -1045 234 -1045 -1045 -1045 234 -1045 -1045 -1045 234 59 -1045 -1045 185 91 -1045 -1045 170 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WHATTTTW MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 9.2e+002 0.428571 0.000000 0.000000 0.571429 0.357143 0.285714 0.000000 0.357143 0.928571 0.000000 0.000000 0.071429 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.285714 0.000000 0.000000 0.714286 0.357143 0.000000 0.000000 0.642857 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WHATTTTW MEME-3 regular expression -------------------------------------------------------------------------------- [TA][ATC]ATTT[TA][TA] -------------------------------------------------------------------------------- Time 12.27 secs. ******************************************************************************** ******************************************************************************** MOTIF AGATAAGR MEME-4 width = 8 sites = 16 llr = 150 E-value = 1.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGATAAGR MEME-4 Description -------------------------------------------------------------------------------- Simplified A 9:a3aa16 pos.-specific C :::1::11 probability G :a::::93 matrix T 1::6:::: bits 2.4 * ** 2.2 * ** 1.9 * * ** 1.7 *** ** Relative 1.4 *** ** Entropy 1.2 *** *** (13.6 bits) 1.0 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AGATAAGA consensus A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATAAGR MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr13:99161874-99161954 64 4.53e-06 tcgctggcca agataaga acttagagg chr16:10742454-10742534 52 4.53e-06 CCTGGTTTTT AGATAAGA GAaatgagac chr11:44569754-44569834 12 8.88e-06 tgacagagga agaaaaga ctagggcctg chr9:132641529-132641609 67 1.61e-05 CTGCCAGCAG AGATAAGG GCATGG chr4:40533422-40533502 53 1.61e-05 GTGTGGTTGG AGATAAGG GGATAGGCGG chr17:40671201-40671281 24 1.61e-05 CCCCATGGGT AGATAAGG TGACTGGAGG chr19:45198781-45198861 67 1.61e-05 GCCTCGCCCA AGATAAGG GGAGGT chr1:154929930-154930010 73 2.31e-05 GTGCATGAAC AGAAAAGG chr19:42347603-42347683 24 4.22e-05 ACCCCACCCC AGATAAGC GCCACCCAAC chr8:91592552-91592632 34 4.22e-05 agcgaggggc tgataaga ccccgaagaa chrX:47510452-47510532 60 4.22e-05 CTCTACGGTT AGACAAGA CCATAGAGCT chr4:123638138-123638218 24 4.22e-05 CTCACCGAAC AGACAAGA CCTCAACGCC chr3:122221170-122221250 52 4.22e-05 ggtcccaccc tgataaga ctggtgtcgt chr12:94306237-94306317 72 4.50e-05 ACCCAAACCA AGATAAAA G chr22:22378285-22378365 66 6.12e-05 CAGCCTCCTG AGAAAAGC ACACAGa chr1:185121491-185121571 18 9.17e-05 ATCCATGTGT AGAAAACA TACAACCATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATAAGR MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr13:99161874-99161954 4.5e-06 63_[+4]_9 chr16:10742454-10742534 4.5e-06 51_[+4]_21 chr11:44569754-44569834 8.9e-06 11_[+4]_61 chr9:132641529-132641609 1.6e-05 66_[+4]_6 chr4:40533422-40533502 1.6e-05 52_[+4]_20 chr17:40671201-40671281 1.6e-05 23_[+4]_49 chr19:45198781-45198861 1.6e-05 66_[+4]_6 chr1:154929930-154930010 2.3e-05 72_[+4] chr19:42347603-42347683 4.2e-05 23_[+4]_49 chr8:91592552-91592632 4.2e-05 33_[+4]_39 chrX:47510452-47510532 4.2e-05 59_[+4]_13 chr4:123638138-123638218 4.2e-05 23_[+4]_49 chr3:122221170-122221250 4.2e-05 51_[+4]_21 chr12:94306237-94306317 4.5e-05 71_[+4]_1 chr22:22378285-22378365 6.1e-05 65_[+4]_7 chr1:185121491-185121571 9.2e-05 17_[+4]_55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATAAGR MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGATAAGR width=8 seqs=16 chr13:99161874-99161954 ( 64) AGATAAGA 1 chr16:10742454-10742534 ( 52) AGATAAGA 1 chr11:44569754-44569834 ( 12) AGAAAAGA 1 chr9:132641529-132641609 ( 67) AGATAAGG 1 chr4:40533422-40533502 ( 53) AGATAAGG 1 chr17:40671201-40671281 ( 24) AGATAAGG 1 chr19:45198781-45198861 ( 67) AGATAAGG 1 chr1:154929930-154930010 ( 73) AGAAAAGG 1 chr19:42347603-42347683 ( 24) AGATAAGC 1 chr8:91592552-91592632 ( 34) TGATAAGA 1 chrX:47510452-47510532 ( 60) AGACAAGA 1 chr4:123638138-123638218 ( 24) AGACAAGA 1 chr3:122221170-122221250 ( 52) TGATAAGA 1 chr12:94306237-94306317 ( 72) AGATAAAA 1 chr22:22378285-22378365 ( 66) AGAAAAGC 1 chr1:185121491-185121571 ( 18) AGAAAACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATAAGR MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1543 E= 1.2e+003 221 -1064 -1064 -66 -1064 -1064 172 -1064 240 -1064 -1064 -1064 40 -130 -1064 166 240 -1064 -1064 -1064 240 -1064 -1064 -1064 -160 -230 152 -1064 157 -130 4 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATAAGR MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 1.2e+003 0.875000 0.000000 0.000000 0.125000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.125000 0.000000 0.625000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.062500 0.062500 0.875000 0.000000 0.562500 0.125000 0.312500 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATAAGR MEME-4 regular expression -------------------------------------------------------------------------------- AGA[TA]AAG[AG] -------------------------------------------------------------------------------- Time 15.75 secs. ******************************************************************************** ******************************************************************************** MOTIF TAAAAMAA MEME-5 width = 8 sites = 13 llr = 128 E-value = 2.2e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAAAAMAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A 3a8a8588 pos.-specific C :::::5:: probability G :::::::2 matrix T 7:2:2:2: bits 2.4 * * 2.2 * * 1.9 * * 1.7 **** ** Relative 1.4 ***** ** Entropy 1.2 ******** (14.2 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TAAAAAAA consensus A TC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAAAMAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr8:37446997-37447077 17 4.64e-06 CCTTTTGGGT TAAAACAA GAAAGAGGAA chr11:59325038-59325118 48 6.34e-06 ATTTAAAAGA AAAAAAAA AAccgggcgt chr6:107831390-107831470 45 6.34e-06 ttttatttac aaaaaaaa cagtgggcag chr11:35843478-35843558 2 6.34e-06 a aaaaaaaa aGCTGAGGCG chr22:21132194-21132274 29 8.18e-06 CTTGTTTACT TAAATAAA GGGAGTGCCC chr22:21220355-21220435 9 1.09e-05 gatattcc aaaaacaa ggaaccaggc chr3:171164774-171164854 43 1.46e-05 ttatctctac taaaaata caaaaattag chr19:13068251-13068331 23 1.46e-05 CACTGACACT TAAAAATA CATATTTTTg chr11:114165849-11416592 49 1.76e-05 aacaaggctg taaatcaa ttattcagca chr7:33102795-33102875 11 2.82e-05 TTCTAAGTGC TATAACAA CAGGGGGAAG chr7:130873548-130873628 2 3.92e-05 C TAAAACAG CGTGTATTCC chr2:69664182-69664262 4 3.92e-05 TTT TAAAACAG CTCCTCCGTT chr9:114654531-114654611 70 4.58e-05 CACACCCACA TATATAAA CAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAAAMAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:37446997-37447077 4.6e-06 16_[+5]_56 chr11:59325038-59325118 6.3e-06 47_[+5]_25 chr6:107831390-107831470 6.3e-06 44_[+5]_28 chr11:35843478-35843558 6.3e-06 1_[+5]_71 chr22:21132194-21132274 8.2e-06 28_[+5]_44 chr22:21220355-21220435 1.1e-05 8_[+5]_64 chr3:171164774-171164854 1.5e-05 42_[+5]_30 chr19:13068251-13068331 1.5e-05 22_[+5]_50 chr11:114165849-11416592 1.8e-05 48_[+5]_24 chr7:33102795-33102875 2.8e-05 10_[+5]_62 chr7:130873548-130873628 3.9e-05 1_[+5]_71 chr2:69664182-69664262 3.9e-05 3_[+5]_69 chr9:114654531-114654611 4.6e-05 69_[+5]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAAAMAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAAAAMAA width=8 seqs=13 chr8:37446997-37447077 ( 17) TAAAACAA 1 chr11:59325038-59325118 ( 48) AAAAAAAA 1 chr6:107831390-107831470 ( 45) AAAAAAAA 1 chr11:35843478-35843558 ( 2) AAAAAAAA 1 chr22:21132194-21132274 ( 29) TAAATAAA 1 chr22:21220355-21220435 ( 9) AAAAACAA 1 chr3:171164774-171164854 ( 43) TAAAAATA 1 chr19:13068251-13068331 ( 23) TAAAAATA 1 chr11:114165849-11416592 ( 49) TAAATCAA 1 chr7:33102795-33102875 ( 11) TATAACAA 1 chr7:130873548-130873628 ( 2) TAAAACAG 1 chr2:69664182-69664262 ( 4) TAAAACAG 1 chr9:114654531-114654611 ( 70) TATATAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAAAMAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.0849 E= 2.2e+002 70 -1035 -1035 181 240 -1035 -1035 -1035 216 -1035 -1035 -36 240 -1035 -1035 -1035 202 -1035 -1035 22 150 58 -1035 -1035 216 -1035 -1035 -36 216 -1035 -98 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAAAMAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 2.2e+002 0.307692 0.000000 0.000000 0.692308 1.000000 0.000000 0.000000 0.000000 0.846154 0.000000 0.000000 0.153846 1.000000 0.000000 0.000000 0.000000 0.769231 0.000000 0.000000 0.230769 0.538462 0.461538 0.000000 0.000000 0.846154 0.000000 0.000000 0.153846 0.846154 0.000000 0.153846 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAAAMAA MEME-5 regular expression -------------------------------------------------------------------------------- [TA]AAA[AT][AC]AA -------------------------------------------------------------------------------- Time 19.19 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:134917631-134917711 8.49e-01 80 chr17:45013226-45013306 1.09e-02 15_[+2(7.91e-05)]_16_[+2(3.09e-05)]_\ 33 chr11:61034230-61034310 1.57e-02 44_[+2(7.91e-05)]_28 chr1:116915330-116915410 2.19e-01 80 chr9:96356610-96356690 2.93e-01 80 chr6:56709076-56709156 7.71e-01 80 chr16:30493857-30493937 4.56e-02 80 chr1:17727582-17727662 9.76e-01 80 chr6:33636876-33636956 3.50e-01 80 chr11:35843478-35843558 1.78e-02 [+5(6.34e-06)]_72 chr12:49690422-49690502 4.93e-01 80 chr20:35094018-35094098 3.49e-02 80 chr6:126193461-126193541 3.83e-02 80 chr21:15249455-15249535 8.36e-03 43_[+1(3.08e-05)]_29 chr12:110348853-11034893 9.49e-01 80 chr1:153590198-153590278 7.12e-01 80 chr11:268156-268236 3.75e-01 80 chr10:11917937-11918017 4.63e-02 80 chr22:21220355-21220435 3.56e-03 8_[+5(1.09e-05)]_64 chr3:72084285-72084365 6.56e-01 80 chr1:43201974-43202054 7.74e-01 80 chr16:81763994-81764074 8.89e-01 80 chr1:22179665-22179745 1.99e-01 27_[+1(3.08e-05)]_45 chr19:45198781-45198861 4.33e-04 24_[+1(3.08e-05)]_34_[+4(1.61e-05)]_\ 6 chr16:10742454-10742534 1.50e-04 22_[+1(8.01e-05)]_21_[+4(4.53e-06)]_\ 21 chr5:134722838-134722918 1.05e-01 80 chr2:242786392-242786472 3.44e-01 80 chr4:1035375-1035455 8.31e-02 80 chr17:16931595-16931675 8.18e-01 80 chr2:86070810-86070890 1.37e-02 44_[+1(8.01e-05)]_28 chr4:6695494-6695574 3.74e-02 80 chr17:40671201-40671281 3.52e-03 23_[+4(1.61e-05)]_17_[+4(2.31e-05)]_\ 24 chr18:71815063-71815143 3.07e-02 19_[+1(8.01e-05)]_8_[+1(3.08e-05)]_\ 37 chr1:156556925-156557005 1.63e-01 80 chr22:46481755-46481835 1.02e-01 80 chr8:38226196-38226276 3.11e-03 48_[+1(3.08e-05)]_24 chr11:3986913-3986993 4.45e-03 13_[+3(8.94e-05)]_23_[+2(7.91e-05)]_\ 28 chr1:22623285-22623365 1.13e-02 38_[+2(3.09e-05)]_34 chr3:51705064-51705144 1.16e-01 80 chr1:23854852-23854932 7.27e-02 80 chr10:74003982-74004062 5.86e-02 48_[+3(2.82e-05)]_24 chr10:43808258-43808338 6.00e-01 80 chr7:102986-103066 8.93e-01 80 chr14:75760917-75760997 4.59e-01 80 chr22:22617303-22617383 4.24e-02 51_[+3(3.57e-05)]_21 chr6:157939870-157939950 5.93e-01 80 chr6:34992701-34992781 1.50e-02 80 chr19:49181591-49181671 3.65e-04 13_[+1(3.08e-05)]_40_[+2(3.09e-05)]_\ 11 chr19:42721893-42721973 3.74e-01 23_[+1(8.01e-05)]_49 chr20:32767657-32767737 1.81e-02 20_[+1(3.08e-05)]_52 chr8:102039733-102039813 8.21e-02 16_[+1(3.08e-05)]_56 chr15:41805953-41806033 4.89e-02 80 chr5:137800783-137800863 6.69e-01 80 chr4:40533422-40533502 2.96e-03 40_[+2(3.09e-05)]_4_[+4(1.61e-05)]_\ 20 chr8:27805996-27806076 1.65e-01 72_[+2(3.09e-05)] chr12:123518297-12351837 5.34e-02 80 chr17:72711381-72711461 6.88e-04 80 chr3:48594514-48594594 6.40e-01 80 chr2:9282927-9283007 9.21e-02 80 chr11:44569754-44569834 2.95e-04 11_[+4(8.88e-06)]_61 chr1:9360315-9360395 1.26e-01 80 chr6:3251797-3251877 1.55e-01 80 chr1:242161975-242162055 2.17e-02 67_[+1(8.01e-05)]_5 chr3:122221170-122221250 6.64e-04 51_[+4(4.22e-05)]_21 chr2:46172591-46172671 4.33e-01 80 chr6:74099024-74099104 4.52e-03 80 chr11:76758770-76758850 3.72e-02 80 chr1:33168780-33168860 2.24e-02 71_[+1(3.08e-05)]_1 chr10:2357321-2357401 5.13e-01 80 chr22:50628922-50629002 1.02e-01 1_[+1(3.08e-05)]_71 chr12:125534188-12553426 2.87e-01 80 chr20:36013252-36013332 9.89e-01 80 chr10:64576361-64576441 5.69e-01 80 chr16:68806172-68806252 6.23e-03 59_[+3(2.27e-05)]_13 chr8:22432001-22432081 7.86e-01 80 chr10:13188542-13188622 2.05e-03 40_[+1(3.08e-05)]_32 chr6:7107086-7107166 3.54e-01 80 chr19:13068251-13068331 4.10e-05 22_[+5(1.46e-05)]_1_[+3(8.70e-06)]_\ 41 chr19:33161049-33161129 4.05e-02 29_[+1(8.01e-05)]_43 chrX:14083175-14083255 1.39e-01 80 chr9:33165901-33165981 1.36e-02 67_[+3(2.27e-05)]_5 chr1:109756498-109756578 6.97e-01 80 chr20:49347610-49347690 9.03e-01 80 chr8:103768511-103768591 8.25e-03 28_[+2(3.09e-05)]_44 chr5:74807668-74807748 2.99e-01 80 chr2:8453229-8453309 7.29e-04 35_[+3(5.68e-05)]_37 chr6:56372481-56372561 1.02e-02 80 chr11:62366790-62366870 7.18e-02 56_[+1(3.08e-05)]_16 chr1:6453728-6453808 9.49e-01 80 chr20:55685468-55685548 2.77e-01 80 chr1:245163140-245163220 9.17e-01 80 chr4:2397437-2397517 1.17e-02 63_[+1(3.08e-05)]_[+4(9.90e-05)]_1 chr13:52158457-52158537 5.09e-01 80 chr10:121191079-12119115 1.89e-02 28_[+2(7.91e-05)]_44 chr17:45266902-45266982 8.60e-02 31_[+2(7.91e-05)]_41 chr8:56765866-56765946 3.47e-02 80 chr17:58217327-58217407 3.32e-01 18_[+1(8.01e-05)]_54 chr1:185121491-185121571 1.45e-03 17_[+4(9.17e-05)]_55 chr1:228646299-228646379 4.18e-01 80 chr10:48332221-48332301 1.32e-02 50_[+1(3.08e-05)]_22 chr1:21023467-21023547 3.57e-01 80 chr1:154929930-154930010 6.91e-04 21_[+1(3.08e-05)]_43_[+4(2.31e-05)] chr16:88298671-88298751 5.81e-01 80 chr2:27273678-27273758 9.67e-04 14_[+2(7.91e-05)]_47_[+3(2.18e-06)]_\ 3 chr14:50470172-50470252 9.95e-03 57_[+1(8.01e-05)]_15 chr13:99161874-99161954 3.27e-04 33_[+1(3.08e-05)]_22_[+4(4.53e-06)]_\ 9 chr7:1781914-1781994 7.37e-01 80 chr9:139378158-139378238 2.01e-01 80 chr16:21531497-21531577 3.34e-01 20_[+1(8.01e-05)]_52 chr9:132641529-132641609 1.28e-03 38_[+2(7.91e-05)]_20_[+4(1.61e-05)]_\ 6 chr12:108297570-10829765 3.49e-01 25_[+1(8.01e-05)]_2_[+1(8.01e-05)]_\ 37 chr19:50169116-50169196 3.33e-01 80 chr1:43418284-43418364 8.09e-02 48_[+1(3.08e-05)]_24 chr7:99841153-99841233 8.67e-01 80 chr12:68759122-68759202 1.88e-01 38_[+1(8.01e-05)]_34 chr3:126108294-126108374 9.85e-01 80 chr3:47913032-47913112 8.30e-02 28_[+1(8.01e-05)]_44 chr10:73291478-73291558 6.70e-02 39_[+3(2.82e-05)]_33 chr19:13076233-13076313 3.24e-01 80 chr1:178986328-178986408 1.24e-02 51_[+2(3.09e-05)]_21 chr2:187597721-187597801 6.73e-02 80 chr12:132076850-13207693 2.79e-02 80 chr1:84971881-84971961 6.14e-01 80 chr1:185014359-185014439 6.14e-01 80 chr2:219157289-219157369 5.64e-01 80 chr11:862210-862290 4.55e-01 80 chr2:69664182-69664262 1.05e-01 3_[+5(3.92e-05)]_69 chr2:16931588-16931668 4.64e-02 23_[+1(3.08e-05)]_49 chr12:56523128-56523208 1.55e-01 24_[+1(3.08e-05)]_48 chr6:107831390-107831470 1.69e-05 44_[+5(6.34e-06)]_9_[+2(3.09e-05)]_\ 11 chr19:11590476-11590556 2.42e-01 15_[+2(7.91e-05)]_7_[+2(7.91e-05)]_\ 42 chr2:240216535-240216615 3.69e-01 80 chr8:37446997-37447077 2.57e-04 16_[+5(4.64e-06)]_56 chr20:61196085-61196165 2.48e-01 18_[+2(3.09e-05)]_2_[+2(3.09e-05)]_\ 44 chr20:52682351-52682431 1.11e-03 42_[+2(3.09e-05)]_30 chr17:19281501-19281581 5.93e-01 80 chr3:49208843-49208923 3.50e-01 80 chr17:8199062-8199142 1.13e-01 23_[+1(8.01e-05)]_49 chr6:158402591-158402671 8.49e-01 80 chr17:60501140-60501220 1.05e-02 62_[+2(7.91e-05)]_10 chr9:139839183-139839263 9.80e-01 80 chr2:218692428-218692508 2.67e-03 24_[+2(3.09e-05)]_48 chr19:17443622-17443702 1.34e-01 80 chr9:108210297-108210377 3.05e-01 80 chr2:10442658-10442738 8.21e-02 80 chr22:21213129-21213209 5.58e-02 12_[+2(7.91e-05)]_60 chr22:22378285-22378365 7.29e-02 65_[+4(6.12e-05)]_7 chr7:157322637-157322717 1.65e-04 36_[+1(3.08e-05)]_18_[+3(4.44e-06)]_\ 10 chr4:10020863-10020943 2.00e-01 53_[+1(8.01e-05)]_19 chr6:2953064-2953144 9.74e-01 80 chr11:13689778-13689858 7.15e-02 51_[+2(7.91e-05)]_21 chr1:208357810-208357890 9.06e-03 7_[+2(3.09e-05)]_65 chr19:1940735-1940815 7.09e-01 80 chr14:105948397-10594847 4.53e-01 80 chr9:131058989-131059069 1.19e-01 80 chr17:73092335-73092415 2.46e-01 80 chr17:41869177-41869257 7.80e-02 80 chr3:38495848-38495928 3.39e-01 80 chr20:23113324-23113404 3.93e-02 80 chr13:115079748-11507982 5.62e-01 80 chr17:2296815-2296895 2.07e-01 80 chr2:61035730-61035810 4.50e-02 14_[+1(3.08e-05)]_58 chr4:40518018-40518098 4.76e-03 24_[+2(7.91e-05)]_48 chr7:156195085-156195165 1.27e-01 41_[+2(3.09e-05)]_31 chr11:112160861-11216094 2.51e-01 80 chr19:1633102-1633182 6.43e-02 80 chr1:43736191-43736271 4.97e-01 80 chr1:2144224-2144304 6.01e-02 63_[+2(3.09e-05)]_1_[+2(7.91e-05)] chr19:14202410-14202490 2.69e-01 80 chr11:114165849-11416592 1.35e-02 48_[+5(1.76e-05)]_24 chr1:207193571-207193651 4.32e-03 24_[+1(3.08e-05)]_48 chr19:50878129-50878209 5.48e-01 80 chr2:72317633-72317713 1.15e-01 80 chr15:96900507-96900587 2.07e-01 80 chr1:32014326-32014406 7.82e-01 80 chr11:82868816-82868896 1.16e-01 80 chr10:43133558-43133638 5.31e-01 80 chr16:34429846-34429926 1.56e-01 80 chr17:73236876-73236956 1.78e-01 80 chr3:171164774-171164854 3.27e-04 42_[+5(1.46e-05)]_12_[+2(7.91e-05)]_\ 10 chr16:1728122-1728202 2.17e-01 80 chr9:114654531-114654611 1.59e-04 58_[+1(3.08e-05)]_3_[+5(4.58e-05)]_\ 3 chr3:13054680-13054760 9.83e-02 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chrX:47510452-47510532 1.73e-02 59_[+4(4.22e-05)]_13 chr22:21132194-21132274 9.74e-04 28_[+5(8.18e-06)]_44 chr10:43601112-43601192 1.68e-01 48_[+2(7.91e-05)]_24 chr8:91592552-91592632 6.49e-04 33_[+4(4.22e-05)]_13_[+2(7.91e-05)]_\ 18 chr1:159894366-159894446 2.56e-02 36_[+1(3.08e-05)]_36 chr5:133561912-133561992 7.10e-02 51_[+2(7.91e-05)]_21 chr19:47839106-47839186 1.93e-02 80 chr18:8913743-8913823 2.53e-04 12_[+1(3.08e-05)]_60 chr5:148985722-148985802 1.14e-01 40_[+1(3.08e-05)]_32 chr16:75543456-75543536 4.02e-03 19_[+1(3.08e-05)]_53 chr16:11836798-11836878 2.38e-01 26_[+1(8.01e-05)]_46 chr19:14185101-14185181 5.76e-01 80 chr9:38068866-38068946 1.24e-01 46_[+1(8.01e-05)]_26 chr7:150725238-150725318 1.83e-01 57_[+1(3.08e-05)]_15 chr7:33102795-33102875 1.18e-02 10_[+5(2.82e-05)]_62 chr2:20850880-20850960 5.85e-01 80 chr17:43394632-43394712 1.65e-01 80 chr1:159047112-159047192 4.20e-01 80 chr19:17001412-17001492 4.88e-01 80 chr3:157218149-157218229 5.40e-03 52_[+2(3.09e-05)]_20 chr14:74226951-74227031 9.78e-01 80 chr15:31507791-31507871 3.81e-01 80 chr19:12917633-12917713 3.14e-01 8_[+2(7.91e-05)]_64 chr19:38795744-38795824 1.51e-03 47_[+1(8.01e-05)]_25 chr11:102980072-10298015 5.19e-01 80 chr16:29302359-29302439 5.13e-01 80 chr7:1894870-1894950 9.70e-02 53_[+1(3.08e-05)]_19 chr6:139456100-139456180 7.58e-01 80 chr1:27339479-27339559 5.47e-01 80 chr10:73620844-73620924 3.56e-02 80 chr1:94511280-94511360 1.75e-01 80 chr5:125850007-125850087 4.22e-02 20_[+3(4.44e-06)]_52 chr11:59325038-59325118 4.57e-08 35_[+3(4.83e-05)]_3_[+5(6.34e-06)]_\ 5_[+2(7.91e-05)]_13 chr2:46656222-46656302 2.62e-01 53_[+2(3.09e-05)]_19 chr3:13579492-13579572 1.53e-01 44_[+3(2.82e-05)]_28 chr19:8578745-8578825 2.34e-01 6_[+2(7.91e-05)]_66 chr1:212731757-212731837 2.59e-01 80 chr7:676136-676216 4.12e-02 80 chr19:12949182-12949262 1.24e-01 80 chr1:228361864-228361944 4.13e-01 1_[+2(7.91e-05)]_8_[+2(7.91e-05)]_8_\ [+2(7.91e-05)]_8_[+2(7.91e-05)]_8_[+2(7.91e-05)]_7 chr19:42347603-42347683 5.38e-05 4_[+1(3.08e-05)]_11_[+4(4.22e-05)]_\ 16_[+3(9.15e-05)]_25 chr12:94306237-94306317 4.11e-05 [+3(6.22e-05)]_63_[+4(4.50e-05)]_1 chr5:176981652-176981732 2.51e-03 80 chr2:10394365-10394445 2.08e-01 50_[+2(3.09e-05)]_22 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n10.farnam.hpc.yale.internal ********************************************************************************