******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/KDM4B.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr1:117724429-117724509 1.0000 80 chr17:46059821-46059901 1.0000 80 chr6:32143858-32143938 1.0000 80 chr7:151406908-151406988 1.0000 80 chr16:88767449-88767529 1.0000 80 chr22:35887646-35887726 1.0000 80 chr9:72046905-72046985 1.0000 80 chr12:117566198-11756627 1.0000 80 chr7:6676859-6676939 1.0000 80 chr16:1458267-1458347 1.0000 80 chr6:28186735-28186815 1.0000 80 chr6:33266745-33266825 1.0000 80 chr6:167368821-167368901 1.0000 80 chrX:153598035-153598115 1.0000 80 chr21:40720991-40721071 1.0000 80 chr21:27107927-27108007 1.0000 80 chr22:35887912-35887992 1.0000 80 chr3:125314421-125314501 1.0000 80 chr2:174829225-174829305 1.0000 80 chr16:9085966-9086046 1.0000 80 chr4:603366-603446 1.0000 80 chr13:114753567-11475364 1.0000 80 chr12:105629988-10563006 1.0000 80 chr4:1723028-1723108 1.0000 80 chr14:105266700-10526678 1.0000 80 chr19:9517714-9517794 1.0000 80 chr8:143751382-143751462 1.0000 80 chr3:194041765-194041845 1.0000 80 chr19:4066006-4066086 1.0000 80 chr11:47574670-47574750 1.0000 80 chr12:69864085-69864165 1.0000 80 chr9:129567258-129567338 1.0000 80 chr7:44084160-44084240 1.0000 80 chr16:24740899-24740979 1.0000 80 chr11:66139382-66139462 1.0000 80 chr12:6798506-6798586 1.0000 80 chr12:121342434-12134251 1.0000 80 chr13:29233198-29233278 1.0000 80 chr3:178865858-178865938 1.0000 80 chr19:18402450-18402530 1.0000 80 chr6:17600475-17600555 1.0000 80 chr6:31869887-31869967 1.0000 80 chr10:51572222-51572302 1.0000 80 chr19:1028163-1028243 1.0000 80 chr19:56092282-56092362 1.0000 80 chr7:63386686-63386766 1.0000 80 chr9:35732241-35732321 1.0000 80 chr15:40331395-40331475 1.0000 80 chr17:7388161-7388241 1.0000 80 chr1:155112994-155113074 1.0000 80 chr10:1102658-1102738 1.0000 80 chr2:149402663-149402743 1.0000 80 chr9:130700104-130700184 1.0000 80 chr3:171758212-171758292 1.0000 80 chr17:75003276-75003356 1.0000 80 chr12:54813048-54813128 1.0000 80 chr9:135282204-135282284 1.0000 80 chr17:38479022-38479102 1.0000 80 chr7:39663126-39663206 1.0000 80 chr9:35103146-35103226 1.0000 80 chr19:56670614-56670694 1.0000 80 chr8:144349531-144349611 1.0000 80 chr11:64692070-64692150 1.0000 80 chr8:101962861-101962941 1.0000 80 chr1:1209222-1209302 1.0000 80 chr10:11936734-11936814 1.0000 80 chr2:174829430-174829510 1.0000 80 chr19:39127689-39127769 1.0000 80 chr19:51963852-51963932 1.0000 80 chr14:35761551-35761631 1.0000 80 chr11:123612364-12361244 1.0000 80 chr8:74884381-74884461 1.0000 80 chr6:20403665-20403745 1.0000 80 chr13:41837693-41837773 1.0000 80 chr1:149514184-149514264 1.0000 80 chr14:23775925-23776005 1.0000 80 chr19:47615582-47615662 1.0000 80 chr15:89089880-89089960 1.0000 80 chr21:44394727-44394807 1.0000 80 chr13:53191566-53191646 1.0000 80 chr6:30650462-30650542 1.0000 80 chr10:27443295-27443375 1.0000 80 chr8:145980977-145981057 1.0000 80 chr20:48532209-48532289 1.0000 80 chr12:121342195-12134227 1.0000 80 chr1:3663898-3663978 1.0000 80 chr19:56632713-56632793 1.0000 80 chr5:168006625-168006705 1.0000 80 chr13:41345308-41345388 1.0000 80 chrX:53285104-53285184 1.0000 80 chr5:180237188-180237268 1.0000 80 chr19:56186504-56186584 1.0000 80 chr8:144766581-144766661 1.0000 80 chr22:29949730-29949810 1.0000 80 chr7:39605915-39605995 1.0000 80 chr6:143999054-143999134 1.0000 80 chr1:236558644-236558724 1.0000 80 chr17:74068621-74068701 1.0000 80 chr1:173837443-173837523 1.0000 80 chr19:54641606-54641686 1.0000 80 chr22:36877628-36877708 1.0000 80 chr12:53846349-53846429 1.0000 80 chr11:1372946-1373026 1.0000 80 chr17:56743934-56744014 1.0000 80 chr1:36023546-36023626 1.0000 80 chr7:44240479-44240559 1.0000 80 chr12:112546652-11254673 1.0000 80 chr22:38004890-38004970 1.0000 80 chr5:132002156-132002236 1.0000 80 chr8:142424964-142425044 1.0000 80 chr19:917193-917273 1.0000 80 chr19:46390051-46390131 1.0000 80 chr8:125384863-125384943 1.0000 80 chr12:54582837-54582917 1.0000 80 chr13:52768556-52768636 1.0000 80 chr16:57716972-57717052 1.0000 80 chr5:138309979-138310059 1.0000 80 chr15:101874641-10187472 1.0000 80 chr7:1544014-1544094 1.0000 80 chr19:1905182-1905262 1.0000 80 chr11:76092140-76092220 1.0000 80 chr17:73389955-73390035 1.0000 80 chr1:149215211-149215291 1.0000 80 chr3:13044230-13044310 1.0000 80 chr16:89307637-89307717 1.0000 80 chr19:50270040-50270120 1.0000 80 chr19:5309039-5309119 1.0000 80 chr8:144373491-144373571 1.0000 80 chr17:45899188-45899268 1.0000 80 chr19:13962090-13962170 1.0000 80 chr9:125675577-125675657 1.0000 80 chr17:47073401-47073481 1.0000 80 chr2:48133813-48133893 1.0000 80 chr5:443227-443307 1.0000 80 chr2:38152607-38152687 1.0000 80 chr1:38325250-38325330 1.0000 80 chr12:53574409-53574489 1.0000 80 chr9:35812247-35812327 1.0000 80 chr1:11238489-11238569 1.0000 80 chr5:93954313-93954393 1.0000 80 chr17:80009746-80009826 1.0000 80 chr16:89307429-89307509 1.0000 80 chr11:31391338-31391418 1.0000 80 chr7:134896181-134896261 1.0000 80 chr5:167913400-167913480 1.0000 80 chr10:11157467-11157547 1.0000 80 chr16:89787340-89787420 1.0000 80 chr7:6616990-6617070 1.0000 80 chr5:78908232-78908312 1.0000 80 chr19:18391184-18391264 1.0000 80 chr20:60962066-60962146 1.0000 80 chr2:179387876-179387956 1.0000 80 chr21:46493768-46493848 1.0000 80 chr17:40172049-40172129 1.0000 80 chr3:119217219-119217299 1.0000 80 chr2:174830161-174830241 1.0000 80 chr17:1945269-1945349 1.0000 80 chr16:31128953-31129033 1.0000 80 chr1:52195357-52195437 1.0000 80 chr17:56495002-56495082 1.0000 80 chr19:48018643-48018723 1.0000 80 chr6:41041401-41041481 1.0000 80 chr8:9413349-9413429 1.0000 80 chr5:133702879-133702959 1.0000 80 chr7:152161104-152161184 1.0000 80 chr5:114598531-114598611 1.0000 80 chr17:46703993-46704073 1.0000 80 chr7:66675688-66675768 1.0000 80 chr7:75508173-75508253 1.0000 80 chr19:18528506-18528586 1.0000 80 chr19:9938538-9938618 1.0000 80 chr14:51135257-51135337 1.0000 80 chr17:7142851-7142931 1.0000 80 chr19:56110889-56110969 1.0000 80 chr4:41937098-41937178 1.0000 80 chr22:25029739-25029819 1.0000 80 chr2:43154805-43154885 1.0000 80 chr17:76125167-76125247 1.0000 80 chr10:73506445-73506525 1.0000 80 chr5:154062479-154062559 1.0000 80 chr11:43380448-43380528 1.0000 80 chr17:618070-618150 1.0000 80 chr14:23120325-23120405 1.0000 80 chr11:67141304-67141384 1.0000 80 chr7:73686994-73687074 1.0000 80 chr19:45542259-45542339 1.0000 80 chr3:49203748-49203828 1.0000 80 chr8:146176207-146176287 1.0000 80 chr6:127664507-127664587 1.0000 80 chr5:72251808-72251888 1.0000 80 chr19:44809162-44809242 1.0000 80 chr3:170076069-170076149 1.0000 80 chr3:193857425-193857505 1.0000 80 chr17:27717348-27717428 1.0000 80 chr6:31789920-31790000 1.0000 80 chr10:49664606-49664686 1.0000 80 chr19:13044519-13044599 1.0000 80 chr16:718045-718125 1.0000 80 chr13:31191947-31192027 1.0000 80 chr4:190708507-190708587 1.0000 80 chr11:45939379-45939459 1.0000 80 chr5:115177586-115177666 1.0000 80 chr6:43655519-43655599 1.0000 80 chr2:61922154-61922234 1.0000 80 chr16:84220635-84220715 1.0000 80 chr3:15469001-15469081 1.0000 80 chr16:19729517-19729597 1.0000 80 chr13:114103637-11410371 1.0000 80 chr1:33283585-33283665 1.0000 80 chr22:21457197-21457277 1.0000 80 chr16:31085665-31085745 1.0000 80 chr7:123174538-123174618 1.0000 80 chr1:156052281-156052361 1.0000 80 chr11:73309291-73309371 1.0000 80 chr19:9879378-9879458 1.0000 80 chr16:2771120-2771200 1.0000 80 chr13:100150827-10015090 1.0000 80 chr12:6798712-6798792 1.0000 80 chrX:100075338-100075418 1.0000 80 chr20:44993018-44993098 1.0000 80 chr6:139094807-139094887 1.0000 80 chr19:18452137-18452217 1.0000 80 chr7:97601628-97601708 1.0000 80 chr7:127032757-127032837 1.0000 80 chr19:44576219-44576299 1.0000 80 chr6:15211431-15211511 1.0000 80 chr2:27994544-27994624 1.0000 80 chr19:10230564-10230644 1.0000 80 chr1:155990721-155990801 1.0000 80 chr7:72068230-72068310 1.0000 80 chr14:75179794-75179874 1.0000 80 chr19:907365-907445 1.0000 80 chr10:26986479-26986559 1.0000 80 chr3:42922573-42922653 1.0000 80 chr4:71570308-71570388 1.0000 80 chrX:153191198-153191278 1.0000 80 chr14:55878536-55878616 1.0000 80 chr12:131714674-13171475 1.0000 80 chr2:242041730-242041810 1.0000 80 chr15:74833321-74833401 1.0000 80 chr2:54014099-54014179 1.0000 80 chr8:125827915-125827995 1.0000 80 chr16:70473169-70473249 1.0000 80 chr12:56223377-56223457 1.0000 80 chr1:3713083-3713163 1.0000 80 chr17:30771410-30771490 1.0000 80 chr1:7887413-7887493 1.0000 80 chr11:6633487-6633567 1.0000 80 chr19:40854348-40854428 1.0000 80 chr9:140473339-140473419 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_KDM4B/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/KDM4B.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.164 C 0.34 G 0.325 T 0.171 Background letter frequencies (from file dataset with add-one prior applied): A 0.164 C 0.339 G 0.325 T 0.171 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF RCTTCCGG MEME-1 width = 8 sites = 97 llr = 767 E-value = 7.6e-060 ******************************************************************************** -------------------------------------------------------------------------------- Motif RCTTCCGG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 5::::::: pos.-specific C 19::aa:3 probability G 3:::::97 matrix T 11aa::1: bits 2.6 2.3 ** 2.1 ** 1.8 ** Relative 1.6 **** Entropy 1.3 ***** (11.4 bits) 1.0 ****** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel ACTTCCGG consensus G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCTTCCGG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:56223377-56223457 43 1.97e-05 GCCTACTTCC ACTTCCGG GGTCACCAGG chr2:242041730-242041810 18 1.97e-05 CCCGTCCTTC ACTTCCGG CCCCCGGTCC chr3:42922573-42922653 2 1.97e-05 C ACTTCCGG CCCCCGAAGC chr19:10230564-10230644 34 1.97e-05 CGAAAACGAG ACTTCCGG TGCCGCCGTC chr12:6798712-6798792 36 1.97e-05 TGGCTGGAAC ACTTCCGG CGCCGCTAGC chr17:618070-618150 41 1.97e-05 AGGCCAGGGC ACTTCCGG GACCGGGGAA chr4:41937098-41937178 56 1.97e-05 TGAAAGGAGC ACTTCCGG GTTCGGCAAT chr3:119217219-119217299 52 1.97e-05 CAGCCAACTC ACTTCCGG GGGTGCACTC chr16:89787340-89787420 55 1.97e-05 ACGCGGCCGC ACTTCCGG CGACGGGCCC chr11:31391338-31391418 40 1.97e-05 CGGAACAGTG ACTTCCGG CGGAAGAAGA chr16:89307429-89307509 69 1.97e-05 agagcgaggg acttccgg gggg chr2:38152607-38152687 63 1.97e-05 GGGCGACTGC ACTTCCGG GTCGGTGTGT chr5:443227-443307 64 1.97e-05 CGCGCTGTCC ACTTCCGG CCGGGACCC chr16:89307637-89307717 41 1.97e-05 agagcgaggg aCTTCCgg gggtaaggga chr7:1544014-1544094 30 1.97e-05 CGAGGACCCG ACTTCCGG AACAACCGGA chr7:44240479-44240559 30 1.97e-05 GCTGCATTGT ACTTCCGG GCTCACATTT chr1:173837443-173837523 51 1.97e-05 GGGGGATTTC ACTTCCGG GACGGTGTTC chr10:27443295-27443375 55 1.97e-05 ACTCAACAGT ACTTCCGG GGCAAGTGAG chr14:35761551-35761631 53 1.97e-05 AGTCGCTGCA ACTTCCGG GAGGTGCTTG chr9:35103146-35103226 50 1.97e-05 CCCCGGATGT ACTTCCGG CAGCTCCCTC chr10:1102658-1102738 72 1.97e-05 CTGGGGCGGG ACTTCCGG C chr13:29233198-29233278 24 1.97e-05 GGACGGACGC ACTTCCGG CGGATGTGGG chr16:24740899-24740979 73 1.97e-05 TGGGGCATTC ACTTCCGG chr11:47574670-47574750 29 1.97e-05 AAATGGCGGC ACTTCCGG CACCTACCAC chr8:143751382-143751462 55 1.97e-05 TCCCCCAGCT ACTTCCGG GACGCTCTAG chr19:44576219-44576299 65 4.03e-05 GGGTAGGGGC ACTTCCGC TCCCGGGG chr7:97601628-97601708 11 4.03e-05 AGAACACCGC ACTTCCGC CTCCCTCGCC chr19:9879378-9879458 55 4.03e-05 GCCGGCTGGC ACTTCCGC TTCCGGTTGC chr3:15469001-15469081 36 4.03e-05 CGCCCCCGCC ACTTCCGC TAGGAACCCG chr19:56110889-56110969 18 4.03e-05 GGGcccctcg acttccgc ctcagctccc chr19:9938538-9938618 31 4.03e-05 TCGAACTTTA ACTTCCGC TTCCGGTTCC chr7:6616990-6617070 37 4.03e-05 GCCCTCGCAC ACTTCCGC CGGAAGTCAG chr1:38325250-38325330 37 4.03e-05 CCCTAACGTC ACTTCCGC TTCCTCTTTC chr12:54582837-54582917 22 4.03e-05 ACCCGCAGCC ACTTCCGC CGGAAATGCT chr8:144766581-144766661 49 4.03e-05 TCGGATAACA ACTTCCGC TCGGGAAGTT chr5:180237188-180237268 18 4.03e-05 CACCGCAGCC ACTTCCGC CCGTCCTCCG chr8:74884381-74884461 50 4.03e-05 CGAAAGAATT ACTTCCGC TGGGTCAGAG chr14:75179794-75179874 12 7.94e-05 AGGAGTTTCC GCTTCCGG GCTATCCTTT chr6:43655519-43655599 33 7.94e-05 GTCCATTTCC GCTTCCGG AACGTAGCGC chr11:45939379-45939459 62 7.94e-05 CCTCCTTCCT GCTTCCGG TCTTAGGCCC chr3:49203748-49203828 46 7.94e-05 CTGCGCTTCC GCTTCCGG GACCCAGCCC chr19:45542259-45542339 55 7.94e-05 TTTCATTTCC GCTTCCGG TGCGGGCCGC chr11:43380448-43380528 22 7.94e-05 ACTAGCTTCC GCTTCCGG TGTGAGCGGC chr17:1945269-1945349 38 7.94e-05 GGGAAAGACC GCTTCCGG TGCTTCCGTC chr5:167913400-167913480 40 7.94e-05 GGGGGTTTCC GCTTCCGG GAGAGGCTGA chr5:93954313-93954393 23 7.94e-05 TGGTACTATC GCTTCCGG GGCTGCCTAG chr12:53574409-53574489 65 7.94e-05 AGGGGGAAGT GCTTCCGG GGAAACGG chr7:39605915-39605995 66 7.94e-05 AGTTGTTGGC GCTTCCGG TGGCCTG chr19:56186504-56186584 66 7.94e-05 GGCAATTTCC GCTTCCGG TCCGTCG chr13:41345308-41345388 43 7.94e-05 CCTCTCTTCC GCTTCCGG CCTGGCGCCT chr6:30650462-30650542 73 7.94e-05 TGGGCGATCT GCTTCCGG chr1:1209222-1209302 25 7.94e-05 CCTAGCTTCT GCTTCCGG TGCGCGGTCC chr6:17600475-17600555 41 7.94e-05 CGGGGCTTCC GCTTCCGG CGGGGGATTG chr3:178865858-178865938 42 7.94e-05 TTGCGCATCT GCTTCCGG GGGATTGTAG chr16:31085665-31085745 64 9.98e-05 ACCTAAGGAC ACTTCCTG TTTCCTAGT chr13:41837693-41837773 24 9.98e-05 GATCACGTTC ACTTCCTG GTTCACTTCT chr15:74833321-74833401 31 1.61e-04 ATTGGCCGAG GCTTCCGC CCGCTTCCAT chr6:139094807-139094887 55 1.61e-04 AAAAGGCGGG GCTTCCGC TTGGGGCATG chr16:19729517-19729597 60 1.61e-04 GGTTCCGGCT TCTTCCGG GTCGCGGCCT chr16:84220635-84220715 13 1.61e-04 CTACCCACGG TCTTCCGG TTTGGACCGG chr5:78908232-78908312 49 1.61e-04 GTCACGTCGG TCTTCCGG GTGTCTTTGA chr5:168006625-168006705 39 1.61e-04 CCCTCGCTCC GCTTCCGC CCGGCTGCTG chr8:145980977-145981057 49 1.61e-04 CCGCCCGGAT TCTTCCGG GGCCGCTCTG chr9:130700104-130700184 52 1.61e-04 GGGTCCACGC TCTTCCGG CTTTGGACTG chr1:155112994-155113074 46 1.61e-04 TTCACGTTCC GCTTCCGC GCGGCCTTCT chr22:36877628-36877708 52 1.82e-04 GCCTGTCGTC ACTTCCTC GGGGGGGGAC chr19:39127689-39127769 64 1.82e-04 CCCTGCTTCG ACTTCCTC CCTTGCCCC chr7:44084160-44084240 53 1.82e-04 GGCCCCTACC ATTTCCGC TTCCTGCCGT chr10:26986479-26986559 67 2.23e-04 TGGCCGAAGC GCTTCCTG TGCCAG chr2:174830161-174830241 50 2.23e-04 CAGGCGGCGC GCTTCCTG TTTGCCCCCG chr8:144373491-144373571 68 2.23e-04 GGAGACTGGC GTTTCCGG CGCGC chr13:52768556-52768636 36 2.23e-04 GCTCTCCTCC GTTTCCGG TCTGGCTTGT chr19:51963852-51963932 38 2.23e-04 ttccctgttt gcttcctg gacaaagttc chr9:129567258-129567338 35 2.23e-04 ACCGGGAAGC GTTTCCGG GGGCTGAAGG chr19:9517714-9517794 38 2.23e-04 ATTCACTTCC GTTTCCGG GAGCGCACTT chr6:32143858-32143938 36 2.23e-04 ACGCCTGCTG GTTTCCGG GGCCGGCCAG chr8:9413349-9413429 4 2.28e-04 ATC ATTTCCTG TGCGCTGGAT chr9:140473339-140473419 39 3.00e-04 TCTCGCGACT CCTTCCGG GGTGCCGGGG chr8:146176207-146176287 64 3.00e-04 TCCCGCCCCG AATTCCGG CCCGCCGCT chr9:135282204-135282284 47 3.00e-04 TAGTGCGTCG CCTTCCGG CCCCCTCGGC chr3:125314421-125314501 17 3.00e-04 TCCCGCCTTC CCTTCCGG AGTAGCGTGA chr6:127664507-127664587 43 3.63e-04 GCGTGCCTTT GTTTCCGC TCCCCCCGGG chr15:89089880-89089960 11 3.63e-04 GCACGTTCCC GTTTCCGC CAGCCACCGG chr21:27107927-27108007 69 3.63e-04 TCTGTGTTTT GTTTCCGC TGGT chr1:3713083-3713163 17 3.73e-04 AGCGCGCGCC ACTTCCGA CCTGTGCCGG chr2:174829225-174829305 26 3.78e-04 CAAGGCAGCC ATTTCCTC TTGTTTCACG chr17:30771410-30771490 8 4.47e-04 GACTACA ACTCCCGG AGTGCTCTGG chr11:73309291-73309371 9 4.47e-04 GGACCACA ACTCCCGG CATGCCCTGC chr7:134896181-134896261 31 4.47e-04 AAGAGCAGGT ACTCCCGG ACCAGCTCGT chr9:125675577-125675657 31 4.47e-04 GGAAGAAAAC ACATCCGG TGCCAACCAG chr12:54813048-54813128 30 4.47e-04 AGTTTGCCAA ACTCCCGG CTGAGCCCTC chrX:153598035-153598115 33 4.47e-04 CCGCCTCCCC ACATCCGG TCGCCCCCCC chr17:75003276-75003356 28 5.18e-04 ACTCAGCCGT GATTCCGG AGCGGTGGCA chr9:35812247-35812327 48 5.87e-04 GGGAGGTCCG CTTTCCGG TCCCGGCGGC chr17:73389955-73390035 46 5.87e-04 CCCGCCGACT TCTTCCTC TTTTCAGCCT chr19:47615582-47615662 52 5.87e-04 ctcctcctcc tcttcctc ccccCGGGGA chr11:64692070-64692150 25 5.87e-04 CGGCCCCGGG CCTTCCTG ACGCAGCCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCTTCCGG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:56223377-56223457 2e-05 42_[+1]_30 chr2:242041730-242041810 2e-05 17_[+1]_55 chr3:42922573-42922653 2e-05 1_[+1]_71 chr19:10230564-10230644 2e-05 33_[+1]_39 chr12:6798712-6798792 2e-05 35_[+1]_37 chr17:618070-618150 2e-05 40_[+1]_32 chr4:41937098-41937178 2e-05 55_[+1]_17 chr3:119217219-119217299 2e-05 51_[+1]_21 chr16:89787340-89787420 2e-05 54_[+1]_18 chr11:31391338-31391418 2e-05 39_[+1]_33 chr16:89307429-89307509 2e-05 68_[+1]_4 chr2:38152607-38152687 2e-05 62_[+1]_10 chr5:443227-443307 2e-05 63_[+1]_9 chr16:89307637-89307717 2e-05 40_[+1]_32 chr7:1544014-1544094 2e-05 29_[+1]_43 chr7:44240479-44240559 2e-05 29_[+1]_43 chr1:173837443-173837523 2e-05 50_[+1]_22 chr10:27443295-27443375 2e-05 54_[+1]_18 chr14:35761551-35761631 2e-05 52_[+1]_20 chr9:35103146-35103226 2e-05 49_[+1]_23 chr10:1102658-1102738 2e-05 71_[+1]_1 chr13:29233198-29233278 2e-05 23_[+1]_49 chr16:24740899-24740979 2e-05 72_[+1] chr11:47574670-47574750 2e-05 28_[+1]_44 chr8:143751382-143751462 2e-05 54_[+1]_18 chr19:44576219-44576299 4e-05 64_[+1]_8 chr7:97601628-97601708 4e-05 10_[+1]_62 chr19:9879378-9879458 4e-05 54_[+1]_18 chr3:15469001-15469081 4e-05 35_[+1]_37 chr19:56110889-56110969 4e-05 17_[+1]_55 chr19:9938538-9938618 4e-05 30_[+1]_42 chr7:6616990-6617070 4e-05 36_[+1]_36 chr1:38325250-38325330 4e-05 36_[+1]_36 chr12:54582837-54582917 4e-05 21_[+1]_51 chr8:144766581-144766661 4e-05 48_[+1]_24 chr5:180237188-180237268 4e-05 17_[+1]_55 chr8:74884381-74884461 4e-05 49_[+1]_23 chr14:75179794-75179874 7.9e-05 11_[+1]_61 chr6:43655519-43655599 7.9e-05 32_[+1]_40 chr11:45939379-45939459 7.9e-05 61_[+1]_11 chr3:49203748-49203828 7.9e-05 45_[+1]_27 chr19:45542259-45542339 7.9e-05 54_[+1]_18 chr11:43380448-43380528 7.9e-05 21_[+1]_51 chr17:1945269-1945349 7.9e-05 37_[+1]_35 chr5:167913400-167913480 7.9e-05 39_[+1]_33 chr5:93954313-93954393 7.9e-05 22_[+1]_50 chr12:53574409-53574489 7.9e-05 64_[+1]_8 chr7:39605915-39605995 7.9e-05 65_[+1]_7 chr19:56186504-56186584 7.9e-05 65_[+1]_7 chr13:41345308-41345388 7.9e-05 42_[+1]_30 chr6:30650462-30650542 7.9e-05 72_[+1] chr1:1209222-1209302 7.9e-05 24_[+1]_48 chr6:17600475-17600555 7.9e-05 40_[+1]_32 chr3:178865858-178865938 7.9e-05 41_[+1]_31 chr16:31085665-31085745 0.0001 63_[+1]_9 chr13:41837693-41837773 0.0001 23_[+1]_49 chr15:74833321-74833401 0.00016 30_[+1]_42 chr6:139094807-139094887 0.00016 54_[+1]_18 chr16:19729517-19729597 0.00016 59_[+1]_13 chr16:84220635-84220715 0.00016 12_[+1]_60 chr5:78908232-78908312 0.00016 48_[+1]_24 chr5:168006625-168006705 0.00016 38_[+1]_34 chr8:145980977-145981057 0.00016 48_[+1]_24 chr9:130700104-130700184 0.00016 51_[+1]_21 chr1:155112994-155113074 0.00016 45_[+1]_27 chr22:36877628-36877708 0.00018 51_[+1]_21 chr19:39127689-39127769 0.00018 63_[+1]_9 chr7:44084160-44084240 0.00018 52_[+1]_20 chr10:26986479-26986559 0.00022 66_[+1]_6 chr2:174830161-174830241 0.00022 49_[+1]_23 chr8:144373491-144373571 0.00022 67_[+1]_5 chr13:52768556-52768636 0.00022 35_[+1]_37 chr19:51963852-51963932 0.00022 37_[+1]_35 chr9:129567258-129567338 0.00022 34_[+1]_38 chr19:9517714-9517794 0.00022 37_[+1]_35 chr6:32143858-32143938 0.00022 35_[+1]_37 chr8:9413349-9413429 0.00023 3_[+1]_69 chr9:140473339-140473419 0.0003 38_[+1]_34 chr8:146176207-146176287 0.0003 63_[+1]_9 chr9:135282204-135282284 0.0003 46_[+1]_26 chr3:125314421-125314501 0.0003 16_[+1]_56 chr6:127664507-127664587 0.00036 42_[+1]_30 chr15:89089880-89089960 0.00036 10_[+1]_62 chr21:27107927-27108007 0.00036 68_[+1]_4 chr1:3713083-3713163 0.00037 16_[+1]_56 chr2:174829225-174829305 0.00038 25_[+1]_47 chr17:30771410-30771490 0.00045 7_[+1]_65 chr11:73309291-73309371 0.00045 8_[+1]_64 chr7:134896181-134896261 0.00045 30_[+1]_42 chr9:125675577-125675657 0.00045 30_[+1]_42 chr12:54813048-54813128 0.00045 29_[+1]_43 chrX:153598035-153598115 0.00045 32_[+1]_40 chr17:75003276-75003356 0.00052 27_[+1]_45 chr9:35812247-35812327 0.00059 47_[+1]_25 chr17:73389955-73390035 0.00059 45_[+1]_27 chr19:47615582-47615662 0.00059 51_[+1]_21 chr11:64692070-64692150 0.00059 24_[+1]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCTTCCGG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RCTTCCGG width=8 seqs=97 chr12:56223377-56223457 ( 43) ACTTCCGG 1 chr2:242041730-242041810 ( 18) ACTTCCGG 1 chr3:42922573-42922653 ( 2) ACTTCCGG 1 chr19:10230564-10230644 ( 34) ACTTCCGG 1 chr12:6798712-6798792 ( 36) ACTTCCGG 1 chr17:618070-618150 ( 41) ACTTCCGG 1 chr4:41937098-41937178 ( 56) ACTTCCGG 1 chr3:119217219-119217299 ( 52) ACTTCCGG 1 chr16:89787340-89787420 ( 55) ACTTCCGG 1 chr11:31391338-31391418 ( 40) ACTTCCGG 1 chr16:89307429-89307509 ( 69) ACTTCCGG 1 chr2:38152607-38152687 ( 63) ACTTCCGG 1 chr5:443227-443307 ( 64) ACTTCCGG 1 chr16:89307637-89307717 ( 41) ACTTCCGG 1 chr7:1544014-1544094 ( 30) ACTTCCGG 1 chr7:44240479-44240559 ( 30) ACTTCCGG 1 chr1:173837443-173837523 ( 51) ACTTCCGG 1 chr10:27443295-27443375 ( 55) ACTTCCGG 1 chr14:35761551-35761631 ( 53) ACTTCCGG 1 chr9:35103146-35103226 ( 50) ACTTCCGG 1 chr10:1102658-1102738 ( 72) ACTTCCGG 1 chr13:29233198-29233278 ( 24) ACTTCCGG 1 chr16:24740899-24740979 ( 73) ACTTCCGG 1 chr11:47574670-47574750 ( 29) ACTTCCGG 1 chr8:143751382-143751462 ( 55) ACTTCCGG 1 chr19:44576219-44576299 ( 65) ACTTCCGC 1 chr7:97601628-97601708 ( 11) ACTTCCGC 1 chr19:9879378-9879458 ( 55) ACTTCCGC 1 chr3:15469001-15469081 ( 36) ACTTCCGC 1 chr19:56110889-56110969 ( 18) ACTTCCGC 1 chr19:9938538-9938618 ( 31) ACTTCCGC 1 chr7:6616990-6617070 ( 37) ACTTCCGC 1 chr1:38325250-38325330 ( 37) ACTTCCGC 1 chr12:54582837-54582917 ( 22) ACTTCCGC 1 chr8:144766581-144766661 ( 49) ACTTCCGC 1 chr5:180237188-180237268 ( 18) ACTTCCGC 1 chr8:74884381-74884461 ( 50) ACTTCCGC 1 chr14:75179794-75179874 ( 12) GCTTCCGG 1 chr6:43655519-43655599 ( 33) GCTTCCGG 1 chr11:45939379-45939459 ( 62) GCTTCCGG 1 chr3:49203748-49203828 ( 46) GCTTCCGG 1 chr19:45542259-45542339 ( 55) GCTTCCGG 1 chr11:43380448-43380528 ( 22) GCTTCCGG 1 chr17:1945269-1945349 ( 38) GCTTCCGG 1 chr5:167913400-167913480 ( 40) GCTTCCGG 1 chr5:93954313-93954393 ( 23) GCTTCCGG 1 chr12:53574409-53574489 ( 65) GCTTCCGG 1 chr7:39605915-39605995 ( 66) GCTTCCGG 1 chr19:56186504-56186584 ( 66) GCTTCCGG 1 chr13:41345308-41345388 ( 43) GCTTCCGG 1 chr6:30650462-30650542 ( 73) GCTTCCGG 1 chr1:1209222-1209302 ( 25) GCTTCCGG 1 chr6:17600475-17600555 ( 41) GCTTCCGG 1 chr3:178865858-178865938 ( 42) GCTTCCGG 1 chr16:31085665-31085745 ( 64) ACTTCCTG 1 chr13:41837693-41837773 ( 24) ACTTCCTG 1 chr15:74833321-74833401 ( 31) GCTTCCGC 1 chr6:139094807-139094887 ( 55) GCTTCCGC 1 chr16:19729517-19729597 ( 60) TCTTCCGG 1 chr16:84220635-84220715 ( 13) TCTTCCGG 1 chr5:78908232-78908312 ( 49) TCTTCCGG 1 chr5:168006625-168006705 ( 39) GCTTCCGC 1 chr8:145980977-145981057 ( 49) TCTTCCGG 1 chr9:130700104-130700184 ( 52) TCTTCCGG 1 chr1:155112994-155113074 ( 46) GCTTCCGC 1 chr22:36877628-36877708 ( 52) ACTTCCTC 1 chr19:39127689-39127769 ( 64) ACTTCCTC 1 chr7:44084160-44084240 ( 53) ATTTCCGC 1 chr10:26986479-26986559 ( 67) GCTTCCTG 1 chr2:174830161-174830241 ( 50) GCTTCCTG 1 chr8:144373491-144373571 ( 68) GTTTCCGG 1 chr13:52768556-52768636 ( 36) GTTTCCGG 1 chr19:51963852-51963932 ( 38) GCTTCCTG 1 chr9:129567258-129567338 ( 35) GTTTCCGG 1 chr19:9517714-9517794 ( 38) GTTTCCGG 1 chr6:32143858-32143938 ( 36) GTTTCCGG 1 chr8:9413349-9413429 ( 4) ATTTCCTG 1 chr9:140473339-140473419 ( 39) CCTTCCGG 1 chr8:146176207-146176287 ( 64) AATTCCGG 1 chr9:135282204-135282284 ( 47) CCTTCCGG 1 chr3:125314421-125314501 ( 17) CCTTCCGG 1 chr6:127664507-127664587 ( 43) GTTTCCGC 1 chr15:89089880-89089960 ( 11) GTTTCCGC 1 chr21:27107927-27108007 ( 69) GTTTCCGC 1 chr1:3713083-3713163 ( 17) ACTTCCGA 1 chr2:174829225-174829305 ( 26) ATTTCCTC 1 chr17:30771410-30771490 ( 8) ACTCCCGG 1 chr11:73309291-73309371 ( 9) ACTCCCGG 1 chr7:134896181-134896261 ( 31) ACTCCCGG 1 chr9:125675577-125675657 ( 31) ACATCCGG 1 chr12:54813048-54813128 ( 30) ACTCCCGG 1 chrX:153598035-153598115 ( 33) ACATCCGG 1 chr17:75003276-75003356 ( 28) GATTCCGG 1 chr9:35812247-35812327 ( 48) CTTTCCGG 1 chr17:73389955-73390035 ( 46) TCTTCCTC 1 chr19:47615582-47615662 ( 52) TCTTCCTC 1 chr11:64692070-64692150 ( 25) CCTTCCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCTTCCGG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.00842 E= 7.6e-060 171 -272 7 -125 -299 133 -1324 -47 -299 -1324 -1324 251 -1324 -304 -1324 248 -1324 156 -1324 -1324 -1324 156 -1324 -1324 -1324 -1324 143 -47 -399 -40 117 -1324 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCTTCCGG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 97 E= 7.6e-060 0.536082 0.051546 0.340206 0.072165 0.020619 0.855670 0.000000 0.123711 0.020619 0.000000 0.000000 0.979381 0.000000 0.041237 0.000000 0.958763 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.876289 0.123711 0.010309 0.257732 0.731959 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCTTCCGG MEME-1 regular expression -------------------------------------------------------------------------------- [AG]CTTCCG[GC] -------------------------------------------------------------------------------- Time 4.89 secs. ******************************************************************************** ******************************************************************************** MOTIF CGGAAGTG MEME-2 width = 8 sites = 111 llr = 819 E-value = 5.0e-054 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGGAAGTG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 21:aa122 pos.-specific C 7:::::21 probability G 19a::926 matrix T ::::::52 bits 2.6 * 2.3 ** 2.1 ** 1.8 ** Relative 1.6 *** Entropy 1.3 ***** (10.6 bits) 1.0 ***** 0.8 ***** 0.5 ******* 0.3 ******** 0.0 -------- Multilevel CGGAAGTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGAAGTG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr20:44993018-44993098 28 1.74e-05 ATCTCCCCAC CGGAAGTG CGAGGCCGGA chrX:100075338-100075418 25 1.74e-05 GTGCTCCGTA CGGAAGTG TGCTTTGGCG chr16:84220635-84220715 28 1.74e-05 CGGTTTGGAC CGGAAGTG CCTCCTGCGG chr13:31191947-31192027 6 1.74e-05 GCGAC CGGAAGTG CTCACGTCTT chr16:718045-718125 29 1.74e-05 cgggcggggc cggaagtg tggggacagc chr19:44809162-44809242 4 1.74e-05 GAG CGGAAGTG CCTCCGAGTG chr3:49203748-49203828 26 1.74e-05 CGCTGCGCGC CGGAAGTG CACTGCGCTT chr8:9413349-9413429 40 1.74e-05 GTCCGACAGT CGGAAGTG AGGGCGGGCG chr17:80009746-80009826 24 1.74e-05 TTCGCTGCCC CGGAAGTG GACGGCACGC chr12:53574409-53574489 15 1.74e-05 CTGCCGAGCC CGGAAGTG GATGCAGCCG chr5:443227-443307 42 1.74e-05 TTGCCGGAAG CGGAAGTG CCCGCGCGCT chr8:144373491-144373571 29 1.74e-05 AGAGCGTCGC CGGAAGTG CCGAGGGGGC chr5:180237188-180237268 34 1.74e-05 GCCCGTCCTC CGGAAGTG GGCCCCGGCA chr10:11936734-11936814 44 1.74e-05 GGGGGCCCAC CGGAAGTG GGGGGAGCTT chr8:144349531-144349611 42 1.74e-05 CAGAGCGTCC CGGAAGTG CGCGCCGGCC chr7:39663126-39663206 33 1.74e-05 CCCAGCGCCC CGGAAGTG ATCTGTGGCG chr9:135282204-135282284 5 1.74e-05 AACC CGGAAGTG CTGCTGTTGA chr19:1028163-1028243 44 1.74e-05 gctgGGCCTG CGGAAGTG GGAGCGGGCA chr13:29233198-29233278 58 1.74e-05 CCCTCGGAAA CGGAAGTG AGCGGCGGGG chr12:6798506-6798586 29 1.74e-05 TGCACTCACC CGGAAGTG GTGCTGCAGC chr12:69864085-69864165 69 1.74e-05 CCCGCTCCCC CGGAAGTG CTTT chr12:105629988-10563006 30 1.74e-05 GCAGGGAAAC CGGAAGTG TGGTGAGCTC chr13:100150827-10015090 41 2.62e-05 AGGCCGGATC CGGAAGTA GGGGGACCAC chr22:29949730-29949810 10 2.62e-05 ATAGAGAAC CGGAAGTA AGGAAGGGGC chr20:48532209-48532289 71 2.62e-05 GACTGGGACC CGGAAGTA AA chr7:127032757-127032837 33 4.37e-05 GGGCGAGGGC AGGAAGTG ACAAGCTCAC chr16:31085665-31085745 28 4.37e-05 GCTCCCGAAG CGGAAGTT TCGCGGGGAA chr3:15469001-15469081 52 4.37e-05 GCTAGGAACC CGGAAGTT CCTACCCGAC chr19:18528506-18528586 33 4.37e-05 CCGGCTGGAC AGGAAGTG GGAAGGGCTG chr19:18402450-18402530 50 4.37e-05 tctcccGGGG AGGAAGTG GCGAGAATGC chr7:6676859-6676939 40 4.37e-05 cccgcGTGAC CGGAAGTT CCTccccccg chr16:88767449-88767529 35 4.37e-05 CCGTCACCAC AGGAAGTG AGAGATGAAG chr6:32143858-32143938 52 4.37e-05 GGGGCCGGCC AGGAAGTG GAGGGCGGTG chr1:7887413-7887493 30 6.04e-05 CGACCTCACC CGGAAGAG AATACGCAGC chr16:2771120-2771200 43 6.04e-05 GGCGCCGCGG CGGAAGAG GCTCGGGGAG chr7:134896181-134896261 18 6.04e-05 CGTGAACCCG CGGAAGAG CAGGTACTCC chr13:53191566-53191646 49 6.04e-05 AGACCAGAAA CGGAAGAG AGCGCGGGGG chr4:41937098-41937178 40 7.79e-05 CTCTTCCCCA CGGAAATG AAAGGAGCAC chr5:93954313-93954393 7 7.79e-05 ACCACC CGGAAATG GTACTATCGC chr15:101874641-10187472 36 7.79e-05 GCAGTGACAC AGGAAGTT GTTCTCACCA chr12:54582837-54582917 30 7.79e-05 CCACTTCCGC CGGAAATG CTCCAATCCC chr11:31391338-31391418 48 8.63e-05 TGACTTCCGG CGGAAGAA GAAGCCGGTC chr14:35761551-35761631 13 8.63e-05 CATGCAAGAG CGGAAGAA ACGCGGCTGG chr6:28186735-28186815 37 8.63e-05 GCGGGGGGAG CGGAAGAA GGACCGGGCT chr10:26986479-26986559 30 1.87e-04 ACCGCAAGCG AGGAAGAG CGAACCGCGC chr19:10230564-10230644 14 1.87e-04 GGCCAGAGAG CGGAAGCG GGCGAAAACG chr7:97601628-97601708 36 1.87e-04 GCCACCACCC CGGAAGCG CTCGCCGCCG chr10:49664606-49664686 40 1.87e-04 GCAGGAGGCA GGGAAGTG TGGTTGGCAG chr5:114598531-114598611 25 1.87e-04 CATGCTGCTC CGGAAGCG ACGTCCGCCG chr5:133702879-133702959 31 1.87e-04 GACCCGGAAG GGGAAGTG GGAAGAAACG chr20:60962066-60962146 31 1.87e-04 TGGCGTGACC CGGAAGCG CTCGCCGAGG chr9:125675577-125675657 2 1.87e-04 C CGGAAGAT GGACTTAGCC chr19:56186504-56186584 5 1.87e-04 GCTG CGGAAGCG ACTCCTGCCA chr1:3663898-3663978 47 1.87e-04 AACCCGGATC CGGAAGCG CGGGGTCGCG chr11:123612364-12361244 27 1.87e-04 CGCCCGGAAC CGGAAGCG ATCGCTCGCC chr19:56092282-56092362 70 1.87e-04 GCTGGGAAGC CGGAAGCG GGA chr16:24740899-24740979 46 1.87e-04 GTGGCGCCCC CGGAAGGG GTTGCCGAGT chr1:155990721-155990801 24 1.92e-04 TCCGAAAGAC CGGAAATA AGCACTGGCC chr2:38152607-38152687 35 1.92e-04 CGGAGGGAAG CGGAAATA CTTGCGGTGG chr19:50270040-50270120 26 1.92e-04 AGCTCCCAAA CGGAAATA GCGGAACACT chr16:19729517-19729597 14 2.19e-04 CGCCGTGACC CGGAAGTC CACTTCGAGT chr8:146176207-146176287 48 2.19e-04 GGCTGACCCC CGGAAGTC CCGCCCCGAA chr7:6616990-6617070 45 2.19e-04 ACACTTCCGC CGGAAGTC AGCCCCTCAG chr9:35812247-35812327 12 2.19e-04 CTCTGCGGGG CGGAAGTC TTCAGCCTAG chr1:155112994-155113074 20 2.19e-04 TGTTGGCGTC CGGAAGTC CTCCCTGGTT chr19:907365-907445 46 2.28e-04 GGGCCGATAA CAGAAGTG ACATCCGAGG chr8:125384863-125384943 73 2.28e-04 CTAGCGGCAG CAGAAGTG chr14:75179794-75179874 32 2.74e-04 TATCCTTTGC CGGAAGCA GTATGTGAAT chr2:27994544-27994624 35 2.74e-04 GGCCGTGCCC CGGAAGCA GTTGTTGTTG chr13:114103637-11410371 9 2.74e-04 GGCTCACC CGGAAGGA GGGAGCCCTG chr7:1544014-1544094 44 2.74e-04 CCGGAACAAC CGGAAGGA AAACAGTGCG chr7:39605915-39605995 49 2.74e-04 GCCTTCGGAC CGGAAGGA GTTGTTGGCG chr15:89089880-89089960 48 2.74e-04 CCAGCAAAAA GGGAAGTA GGGGAGAGCA chr1:3713083-3713163 32 3.64e-04 CGACCTGTGC CGGAAAAG CCCATAGAGA chr4:71570308-71570388 15 3.64e-04 CGGAGGGAAG CGGAAGGT GGGGAGTGGG chr17:46703993-46704073 60 3.64e-04 CTCCCGCTGC AGGAAGGG GGGCAGTTCT chr17:40172049-40172129 22 3.64e-04 TCTTGCCTGA CGGAAGCT GGGGAGCGGG chr2:179387876-179387956 19 3.64e-04 CCTGGCGTTG CGGAAGGT GGGGTGTGGG chr16:89787340-89787420 37 3.64e-04 AGCGGACCGC AGGAAGGG ACGCGGCCGC chr8:144766581-144766661 30 3.64e-04 CTAGAGGGGC CGGAAGCT TTCGGATAAC chr19:51963852-51963932 70 3.64e-04 caagggaagg gggaagtt gga chr4:603366-603446 19 3.64e-04 GATTGACACA AGGAAGAT GATTGACACA chr12:56223377-56223457 59 3.97e-04 GGGGTCACCA GGGAAGAG ACGGGAAGGA chr12:131714674-13171475 11 3.97e-04 TTTATGGGCC GGGAAGAG GCAGCCAGAG chr12:6798712-6798792 72 4.06e-04 ATATTCAGGG CAGAAGTT A chr2:54014099-54014179 52 5.13e-04 TCGTCTGCCC CGGAAACG GTGACAGGAG chr19:44576219-44576299 29 5.13e-04 GGGGAATTCT GGGAAATG TAGTTCACAC chr6:139094807-139094887 42 5.13e-04 CTGGGGGAGC AGGAAAAG GCGGGGCTTC chr19:9879378-9879458 6 5.13e-04 CAGCT AGGAAGCT GCTGGAGAGC chr7:73686994-73687074 51 5.13e-04 AGGCATGGAC AGGAAGCT AGAACGGCAG chr1:38325250-38325330 58 5.13e-04 CTCTTTCCGG AGGAAGGT GGGGACAGAG chr12:112546652-11254673 53 5.13e-04 CGCGCCTGCG CGGAAAGG GAAGCATCCA chr9:35732241-35732321 9 5.13e-04 GGGCAGGC AGGAAGCT GCTCTGGCCC chr4:1723028-1723108 44 5.13e-04 CCCTCCACTC CGGAAACG GAACCGTCGG chr5:72251808-72251888 10 5.29e-04 CCGGTCTCT GGGAAGAA GGCGGCGGCG chr1:33283585-33283665 53 6.14e-04 TGTTGCTGGC GGGAAGAT AGCCGCGGGC chr16:89307429-89307509 48 6.14e-04 GACTTCCggg gggaaggg aggagagcga chr16:89307637-89307717 20 6.14e-04 gacttccggg gggaaggg aggagagcga chr14:105266700-10526678 59 6.14e-04 ggggcggACA GGGAAGGG GGGGCGAGGG chr6:15211431-15211511 38 7.85e-04 ggcttaaaat aggaagac tagctgggct chr7:152161104-152161184 23 7.85e-04 GAGGGAGACC CGGAAGGC GGTGGGGGCG chr2:48133813-48133893 59 7.85e-04 AGGGGGAAAG AGGAAAGG GGGAGTGTGG chr16:57716972-57717052 19 7.85e-04 ATTTGAAAGG CAGAAGAA GAGGAGTCAG chr8:145980977-145981057 21 7.85e-04 CGCCGGGAAC CGGAAGCC AGCCGCGGTT chr10:27443295-27443375 28 7.85e-04 CAATCCGCCC CGGAAGGC GAGGCGCTAA chr19:13962090-13962170 15 8.36e-04 TGCGGGCAGG CAGAAGGG GGGCCTGGGG chr5:115177586-115177666 58 8.69e-04 GGGGCGGGTG GGGAAGGA TCGCAGGCGA chr17:27717348-27717428 25 9.18e-04 GGTAAAGGGG GGGAAGCT GGGCAGCGGC chr3:13044230-13044310 20 9.49e-04 ttccacatca aagaaatg caaatcaaaa chr22:35887912-35887992 35 9.49e-04 TCCCCTGCCC CGGATGTG CTCCCTGCCC chr22:35887646-35887726 31 9.49e-04 TCCCCTGCCC CGGATGTG CTCCCTGCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGAAGTG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr20:44993018-44993098 1.7e-05 27_[+2]_45 chrX:100075338-100075418 1.7e-05 24_[+2]_48 chr16:84220635-84220715 1.7e-05 27_[+2]_45 chr13:31191947-31192027 1.7e-05 5_[+2]_67 chr16:718045-718125 1.7e-05 28_[+2]_44 chr19:44809162-44809242 1.7e-05 3_[+2]_69 chr3:49203748-49203828 1.7e-05 25_[+2]_47 chr8:9413349-9413429 1.7e-05 39_[+2]_33 chr17:80009746-80009826 1.7e-05 23_[+2]_49 chr12:53574409-53574489 1.7e-05 14_[+2]_58 chr5:443227-443307 1.7e-05 41_[+2]_31 chr8:144373491-144373571 1.7e-05 28_[+2]_44 chr5:180237188-180237268 1.7e-05 33_[+2]_39 chr10:11936734-11936814 1.7e-05 43_[+2]_29 chr8:144349531-144349611 1.7e-05 41_[+2]_31 chr7:39663126-39663206 1.7e-05 32_[+2]_40 chr9:135282204-135282284 1.7e-05 4_[+2]_68 chr19:1028163-1028243 1.7e-05 43_[+2]_29 chr13:29233198-29233278 1.7e-05 57_[+2]_15 chr12:6798506-6798586 1.7e-05 28_[+2]_44 chr12:69864085-69864165 1.7e-05 68_[+2]_4 chr12:105629988-10563006 1.7e-05 29_[+2]_43 chr13:100150827-10015090 2.6e-05 40_[+2]_32 chr22:29949730-29949810 2.6e-05 9_[+2]_63 chr20:48532209-48532289 2.6e-05 70_[+2]_2 chr7:127032757-127032837 4.4e-05 32_[+2]_40 chr16:31085665-31085745 4.4e-05 27_[+2]_45 chr3:15469001-15469081 4.4e-05 51_[+2]_21 chr19:18528506-18528586 4.4e-05 32_[+2]_40 chr19:18402450-18402530 4.4e-05 49_[+2]_23 chr7:6676859-6676939 4.4e-05 39_[+2]_33 chr16:88767449-88767529 4.4e-05 34_[+2]_38 chr6:32143858-32143938 4.4e-05 51_[+2]_21 chr1:7887413-7887493 6e-05 29_[+2]_43 chr16:2771120-2771200 6e-05 42_[+2]_30 chr7:134896181-134896261 6e-05 17_[+2]_55 chr13:53191566-53191646 6e-05 48_[+2]_24 chr4:41937098-41937178 7.8e-05 39_[+2]_33 chr5:93954313-93954393 7.8e-05 6_[+2]_66 chr15:101874641-10187472 7.8e-05 35_[+2]_37 chr12:54582837-54582917 7.8e-05 29_[+2]_43 chr11:31391338-31391418 8.6e-05 47_[+2]_25 chr14:35761551-35761631 8.6e-05 12_[+2]_60 chr6:28186735-28186815 8.6e-05 36_[+2]_36 chr10:26986479-26986559 0.00019 29_[+2]_43 chr19:10230564-10230644 0.00019 13_[+2]_59 chr7:97601628-97601708 0.00019 35_[+2]_37 chr10:49664606-49664686 0.00019 39_[+2]_33 chr5:114598531-114598611 0.00019 24_[+2]_48 chr5:133702879-133702959 0.00019 30_[+2]_42 chr20:60962066-60962146 0.00019 30_[+2]_42 chr9:125675577-125675657 0.00019 1_[+2]_71 chr19:56186504-56186584 0.00019 4_[+2]_68 chr1:3663898-3663978 0.00019 46_[+2]_26 chr11:123612364-12361244 0.00019 26_[+2]_46 chr19:56092282-56092362 0.00019 69_[+2]_3 chr16:24740899-24740979 0.00019 45_[+2]_27 chr1:155990721-155990801 0.00019 23_[+2]_49 chr2:38152607-38152687 0.00019 34_[+2]_38 chr19:50270040-50270120 0.00019 25_[+2]_47 chr16:19729517-19729597 0.00022 13_[+2]_59 chr8:146176207-146176287 0.00022 47_[+2]_25 chr7:6616990-6617070 0.00022 44_[+2]_28 chr9:35812247-35812327 0.00022 11_[+2]_61 chr1:155112994-155113074 0.00022 19_[+2]_53 chr19:907365-907445 0.00023 45_[+2]_27 chr8:125384863-125384943 0.00023 72_[+2] chr14:75179794-75179874 0.00027 31_[+2]_41 chr2:27994544-27994624 0.00027 34_[+2]_38 chr13:114103637-11410371 0.00027 8_[+2]_64 chr7:1544014-1544094 0.00027 43_[+2]_29 chr7:39605915-39605995 0.00027 48_[+2]_24 chr15:89089880-89089960 0.00027 47_[+2]_25 chr1:3713083-3713163 0.00036 31_[+2]_41 chr4:71570308-71570388 0.00036 14_[+2]_58 chr17:46703993-46704073 0.00036 59_[+2]_13 chr17:40172049-40172129 0.00036 21_[+2]_51 chr2:179387876-179387956 0.00036 18_[+2]_54 chr16:89787340-89787420 0.00036 36_[+2]_36 chr8:144766581-144766661 0.00036 29_[+2]_43 chr19:51963852-51963932 0.00036 69_[+2]_3 chr4:603366-603446 0.00036 18_[+2]_54 chr12:56223377-56223457 0.0004 58_[+2]_14 chr12:131714674-13171475 0.0004 10_[+2]_62 chr12:6798712-6798792 0.00041 71_[+2]_1 chr2:54014099-54014179 0.00051 51_[+2]_21 chr19:44576219-44576299 0.00051 28_[+2]_44 chr6:139094807-139094887 0.00051 41_[+2]_31 chr19:9879378-9879458 0.00051 5_[+2]_67 chr7:73686994-73687074 0.00051 50_[+2]_22 chr1:38325250-38325330 0.00051 57_[+2]_15 chr12:112546652-11254673 0.00051 52_[+2]_20 chr9:35732241-35732321 0.00051 8_[+2]_64 chr4:1723028-1723108 0.00051 43_[+2]_29 chr5:72251808-72251888 0.00053 9_[+2]_63 chr1:33283585-33283665 0.00061 52_[+2]_20 chr16:89307429-89307509 0.00061 47_[+2]_25 chr16:89307637-89307717 0.00061 19_[+2]_53 chr14:105266700-10526678 0.00061 58_[+2]_14 chr6:15211431-15211511 0.00079 37_[+2]_35 chr7:152161104-152161184 0.00079 22_[+2]_50 chr2:48133813-48133893 0.00079 58_[+2]_14 chr16:57716972-57717052 0.00079 18_[+2]_54 chr8:145980977-145981057 0.00079 20_[+2]_52 chr10:27443295-27443375 0.00079 27_[+2]_45 chr19:13962090-13962170 0.00084 14_[+2]_58 chr5:115177586-115177666 0.00087 57_[+2]_15 chr17:27717348-27717428 0.00092 24_[+2]_48 chr3:13044230-13044310 0.00095 19_[+2]_53 chr22:35887912-35887992 0.00095 34_[+2]_38 chr22:35887646-35887726 0.00095 30_[+2]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGAAGTG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGGAAGTG width=8 seqs=111 chr20:44993018-44993098 ( 28) CGGAAGTG 1 chrX:100075338-100075418 ( 25) CGGAAGTG 1 chr16:84220635-84220715 ( 28) CGGAAGTG 1 chr13:31191947-31192027 ( 6) CGGAAGTG 1 chr16:718045-718125 ( 29) CGGAAGTG 1 chr19:44809162-44809242 ( 4) CGGAAGTG 1 chr3:49203748-49203828 ( 26) CGGAAGTG 1 chr8:9413349-9413429 ( 40) CGGAAGTG 1 chr17:80009746-80009826 ( 24) CGGAAGTG 1 chr12:53574409-53574489 ( 15) CGGAAGTG 1 chr5:443227-443307 ( 42) CGGAAGTG 1 chr8:144373491-144373571 ( 29) CGGAAGTG 1 chr5:180237188-180237268 ( 34) CGGAAGTG 1 chr10:11936734-11936814 ( 44) CGGAAGTG 1 chr8:144349531-144349611 ( 42) CGGAAGTG 1 chr7:39663126-39663206 ( 33) CGGAAGTG 1 chr9:135282204-135282284 ( 5) CGGAAGTG 1 chr19:1028163-1028243 ( 44) CGGAAGTG 1 chr13:29233198-29233278 ( 58) CGGAAGTG 1 chr12:6798506-6798586 ( 29) CGGAAGTG 1 chr12:69864085-69864165 ( 69) CGGAAGTG 1 chr12:105629988-10563006 ( 30) CGGAAGTG 1 chr13:100150827-10015090 ( 41) CGGAAGTA 1 chr22:29949730-29949810 ( 10) CGGAAGTA 1 chr20:48532209-48532289 ( 71) CGGAAGTA 1 chr7:127032757-127032837 ( 33) AGGAAGTG 1 chr16:31085665-31085745 ( 28) CGGAAGTT 1 chr3:15469001-15469081 ( 52) CGGAAGTT 1 chr19:18528506-18528586 ( 33) AGGAAGTG 1 chr19:18402450-18402530 ( 50) AGGAAGTG 1 chr7:6676859-6676939 ( 40) CGGAAGTT 1 chr16:88767449-88767529 ( 35) AGGAAGTG 1 chr6:32143858-32143938 ( 52) AGGAAGTG 1 chr1:7887413-7887493 ( 30) CGGAAGAG 1 chr16:2771120-2771200 ( 43) CGGAAGAG 1 chr7:134896181-134896261 ( 18) CGGAAGAG 1 chr13:53191566-53191646 ( 49) CGGAAGAG 1 chr4:41937098-41937178 ( 40) CGGAAATG 1 chr5:93954313-93954393 ( 7) CGGAAATG 1 chr15:101874641-10187472 ( 36) AGGAAGTT 1 chr12:54582837-54582917 ( 30) CGGAAATG 1 chr11:31391338-31391418 ( 48) CGGAAGAA 1 chr14:35761551-35761631 ( 13) CGGAAGAA 1 chr6:28186735-28186815 ( 37) CGGAAGAA 1 chr10:26986479-26986559 ( 30) AGGAAGAG 1 chr19:10230564-10230644 ( 14) CGGAAGCG 1 chr7:97601628-97601708 ( 36) CGGAAGCG 1 chr10:49664606-49664686 ( 40) GGGAAGTG 1 chr5:114598531-114598611 ( 25) CGGAAGCG 1 chr5:133702879-133702959 ( 31) GGGAAGTG 1 chr20:60962066-60962146 ( 31) CGGAAGCG 1 chr9:125675577-125675657 ( 2) CGGAAGAT 1 chr19:56186504-56186584 ( 5) CGGAAGCG 1 chr1:3663898-3663978 ( 47) CGGAAGCG 1 chr11:123612364-12361244 ( 27) CGGAAGCG 1 chr19:56092282-56092362 ( 70) CGGAAGCG 1 chr16:24740899-24740979 ( 46) CGGAAGGG 1 chr1:155990721-155990801 ( 24) CGGAAATA 1 chr2:38152607-38152687 ( 35) CGGAAATA 1 chr19:50270040-50270120 ( 26) CGGAAATA 1 chr16:19729517-19729597 ( 14) CGGAAGTC 1 chr8:146176207-146176287 ( 48) CGGAAGTC 1 chr7:6616990-6617070 ( 45) CGGAAGTC 1 chr9:35812247-35812327 ( 12) CGGAAGTC 1 chr1:155112994-155113074 ( 20) CGGAAGTC 1 chr19:907365-907445 ( 46) CAGAAGTG 1 chr8:125384863-125384943 ( 73) CAGAAGTG 1 chr14:75179794-75179874 ( 32) CGGAAGCA 1 chr2:27994544-27994624 ( 35) CGGAAGCA 1 chr13:114103637-11410371 ( 9) CGGAAGGA 1 chr7:1544014-1544094 ( 44) CGGAAGGA 1 chr7:39605915-39605995 ( 49) CGGAAGGA 1 chr15:89089880-89089960 ( 48) GGGAAGTA 1 chr1:3713083-3713163 ( 32) CGGAAAAG 1 chr4:71570308-71570388 ( 15) CGGAAGGT 1 chr17:46703993-46704073 ( 60) AGGAAGGG 1 chr17:40172049-40172129 ( 22) CGGAAGCT 1 chr2:179387876-179387956 ( 19) CGGAAGGT 1 chr16:89787340-89787420 ( 37) AGGAAGGG 1 chr8:144766581-144766661 ( 30) CGGAAGCT 1 chr19:51963852-51963932 ( 70) GGGAAGTT 1 chr4:603366-603446 ( 19) AGGAAGAT 1 chr12:56223377-56223457 ( 59) GGGAAGAG 1 chr12:131714674-13171475 ( 11) GGGAAGAG 1 chr12:6798712-6798792 ( 72) CAGAAGTT 1 chr2:54014099-54014179 ( 52) CGGAAACG 1 chr19:44576219-44576299 ( 29) GGGAAATG 1 chr6:139094807-139094887 ( 42) AGGAAAAG 1 chr19:9879378-9879458 ( 6) AGGAAGCT 1 chr7:73686994-73687074 ( 51) AGGAAGCT 1 chr1:38325250-38325330 ( 58) AGGAAGGT 1 chr12:112546652-11254673 ( 53) CGGAAAGG 1 chr9:35732241-35732321 ( 9) AGGAAGCT 1 chr4:1723028-1723108 ( 44) CGGAAACG 1 chr5:72251808-72251888 ( 10) GGGAAGAA 1 chr1:33283585-33283665 ( 53) GGGAAGAT 1 chr16:89307429-89307509 ( 48) GGGAAGGG 1 chr16:89307637-89307717 ( 20) GGGAAGGG 1 chr14:105266700-10526678 ( 59) GGGAAGGG 1 chr6:15211431-15211511 ( 38) AGGAAGAC 1 chr7:152161104-152161184 ( 23) CGGAAGGC 1 chr2:48133813-48133893 ( 59) AGGAAAGG 1 chr16:57716972-57717052 ( 19) CAGAAGAA 1 chr8:145980977-145981057 ( 21) CGGAAGCC 1 chr10:27443295-27443375 ( 28) CGGAAGGC 1 chr19:13962090-13962170 ( 15) CAGAAGGG 1 chr5:115177586-115177666 ( 58) GGGAAGGA 1 chr17:27717348-27717428 ( 25) GGGAAGCT 1 chr3:13044230-13044310 ( 20) AAGAAATG 1 chr22:35887912-35887992 ( 35) CGGATGTG 1 chr22:35887646-35887726 ( 31) CGGATGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGAAGTG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.02356 E= 5.0e-054 -2 107 -137 -1344 -160 -1344 154 -1344 -1344 -1344 162 -1344 261 -1344 -1344 -1344 258 -1344 -1344 -325 -38 -1344 143 -1344 -2 -99 -100 156 -2 -207 87 -8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGAAGTG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 111 E= 5.0e-054 0.162162 0.711712 0.126126 0.000000 0.054054 0.000000 0.945946 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.981982 0.000000 0.000000 0.018018 0.126126 0.000000 0.873874 0.000000 0.162162 0.171171 0.162162 0.504505 0.162162 0.081081 0.594595 0.162162 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGAAGTG MEME-2 regular expression -------------------------------------------------------------------------------- CGGAAGTG -------------------------------------------------------------------------------- Time 8.37 secs. ******************************************************************************** ******************************************************************************** MOTIF CCTCCYCC MEME-3 width = 8 sites = 50 llr = 387 E-value = 1.6e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCTCCYCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 991a94a9 probability G :::::::: matrix T 119:16:1 bits 2.6 2.3 2.1 * 1.8 * Relative 1.6 ** * Entropy 1.3 ***** ** (11.2 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CCTCCTCC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCCYCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:6633487-6633567 64 4.44e-05 CCGCTCCCCG CCTCCTCC CATAGTGGA chr3:193857425-193857505 10 4.44e-05 CGGGCGCGC CCTCCTCC CCCACCGCCG chr17:7142851-7142931 19 4.44e-05 ctcttctctc cctcctcc cccCGCCGGC chr17:56495002-56495082 27 4.44e-05 ACCCTGCCCC CCTCCTCC TGGTGCTCAC chr17:45899188-45899268 32 4.44e-05 TCCCCTGTCC CCTCCTCC CGCCAAGCTC chr17:73389955-73390035 4 4.44e-05 AGC CCTCCTCC CTCCCTTCCA chr8:142424964-142425044 69 4.44e-05 AGGAACAGCC CCTCCTCC ACTG chr19:47615582-47615662 44 4.44e-05 cccccttcct cctcctcc tcttcctccc chr13:41837693-41837773 67 4.44e-05 GCTCCCGGCC CCTCCTCC GCCACT chr3:171758212-171758292 45 4.44e-05 CACGCCACGT CCTCCTCC CCGTCCTGCC chr17:7388161-7388241 43 4.44e-05 CCCCTTCCCC CCTCCTCC CCTGGCGGGC chr21:40720991-40721071 47 4.44e-05 GAGcccgcct cctcctcc ccccgcgtcc chr2:242041730-242041810 3 1.32e-04 GT CCTCCCCC GTCCTTCACT chr19:45542259-45542339 27 1.32e-04 TGCTCCGCCC CCTCCCCC TAGCGCGGCC chr5:154062479-154062559 19 1.32e-04 tgccagtcgt cctccccc tcgccccctc chr7:75508173-75508253 13 1.32e-04 CCCCGACCCC CCTCCCCC CGTCCCGGCC chr2:179387876-179387956 47 1.32e-04 GCCGGAAGAC CCTCCCCC CGCGTCTTCA chr2:48133813-48133893 34 1.32e-04 GGGTTTCCTC CCTCCCCC GCCTAGGAGG chr17:47073401-47073481 10 1.32e-04 GAGCAGCCC CCTCCCCC ACCGCCCAGA chr5:138309979-138310059 55 1.32e-04 CCACCTCTGT CCTCCCCC TTTGGGCCTG chr12:53846349-53846429 19 1.32e-04 CCTATTCCCC CCTCCCCC CGCCTTTTCC chr19:54641606-54641686 53 1.32e-04 CGGGCGCTCG CCTCCCCC GCCTGTCGCG chr13:41345308-41345388 62 1.32e-04 CTGGCGCCTT CCTCCCCC TTTGCGCTCC chr9:35103146-35103226 64 1.32e-04 CCGGCAGCTC CCTCCCCC GCTTCAACA chr12:54813048-54813128 44 1.32e-04 CCGGCTGAGC CCTCCCCC CGCCTGCCGA chr15:40331395-40331475 66 1.32e-04 CGGCCTGCGC CCTCCCCC CTCCCCG chr19:18402450-18402530 14 1.32e-04 ccgcctcccg cctccccc ctgctcctcg chr12:69864085-69864165 54 1.32e-04 AAAACCCTTC CCTCCCCC GCTCCCCCGG chr3:194041765-194041845 64 1.32e-04 GCCACCCGGG CCTCCCCC AAACCACTC chr7:6676859-6676939 48 1.32e-04 ACCGGAAGTT CCTccccc cgcgggcgcg chr15:74833321-74833401 52 1.77e-04 CTTCCATTCG CTTCCTCC CACAACTCAG chr19:18452137-18452217 55 1.77e-04 ACCAACTGTT TCTCCTCC CTGAGACTCC chr11:76092140-76092220 73 1.77e-04 TTCCCTCAGC CTTCCTCC chr19:1905182-1905262 4 1.77e-04 GCC TCTCCTCC CCTCCCGCCG chr13:52768556-52768636 28 1.77e-04 TCCCCCGCGC TCTCCTCC GTTTCCGGTC chr8:143751382-143751462 18 1.77e-04 GCCACTCGGT TCTCCTCC AGTCCGCGCC chr8:125827915-125827995 71 2.22e-04 ATCAGTAGCT CCTCCTCT GT chr2:27994544-27994624 10 2.22e-04 GCCGGATGT CCTCTTCC AGAACCGGGC chr14:23120325-23120405 50 2.22e-04 TACTGGTGGA CCTCTTCC ATGAATGCCT chr4:41937098-41937178 29 2.22e-04 TTTGTCACCG CCTCTTCC CCACGGAAAT chr6:31869887-31869967 68 2.22e-04 GACGGCCTTG CCTCCTCT TTGGC chr19:56110889-56110969 35 3.99e-04 cctcagctcc cttccccc gccgtactcc chr19:18528506-18528586 56 3.99e-04 GGCTGGCGTC CCCCCTCC CGCGCCGAGG chr17:46703993-46704073 46 3.99e-04 CGCCCGGTCC CCCCCTCC CGCTGCAGGA chr16:89787340-89787420 70 3.99e-04 CGGCGACGGG CCCCCTCC GCG chr19:50270040-50270120 6 3.99e-04 CTCCC CCCCCTCC CCAGCTCCCA chr19:56092282-56092362 9 3.99e-04 GCCTAAGC CTTCCCCC CGGAAACCTG chr17:46059821-46059901 33 3.99e-04 GGGAGGGCCA CCCCCTCC CCACTGCCTT chr11:45939379-45939459 52 5.10e-04 CTTCCTGCGC CCTCCTTC CTGCTTCCGG chr12:6798506-6798586 11 5.10e-04 TCCTTGCTGC CCTCCCCT TGCACTCACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCCYCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:6633487-6633567 4.4e-05 63_[+3]_9 chr3:193857425-193857505 4.4e-05 9_[+3]_63 chr17:7142851-7142931 4.4e-05 18_[+3]_54 chr17:56495002-56495082 4.4e-05 26_[+3]_46 chr17:45899188-45899268 4.4e-05 31_[+3]_41 chr17:73389955-73390035 4.4e-05 3_[+3]_69 chr8:142424964-142425044 4.4e-05 68_[+3]_4 chr19:47615582-47615662 4.4e-05 43_[+3]_29 chr13:41837693-41837773 4.4e-05 66_[+3]_6 chr3:171758212-171758292 4.4e-05 44_[+3]_28 chr17:7388161-7388241 4.4e-05 42_[+3]_30 chr21:40720991-40721071 4.4e-05 46_[+3]_26 chr2:242041730-242041810 0.00013 2_[+3]_70 chr19:45542259-45542339 0.00013 26_[+3]_46 chr5:154062479-154062559 0.00013 18_[+3]_54 chr7:75508173-75508253 0.00013 12_[+3]_60 chr2:179387876-179387956 0.00013 46_[+3]_26 chr2:48133813-48133893 0.00013 33_[+3]_39 chr17:47073401-47073481 0.00013 9_[+3]_63 chr5:138309979-138310059 0.00013 54_[+3]_18 chr12:53846349-53846429 0.00013 18_[+3]_54 chr19:54641606-54641686 0.00013 52_[+3]_20 chr13:41345308-41345388 0.00013 61_[+3]_11 chr9:35103146-35103226 0.00013 63_[+3]_9 chr12:54813048-54813128 0.00013 43_[+3]_29 chr15:40331395-40331475 0.00013 65_[+3]_7 chr19:18402450-18402530 0.00013 13_[+3]_59 chr12:69864085-69864165 0.00013 53_[+3]_19 chr3:194041765-194041845 0.00013 63_[+3]_9 chr7:6676859-6676939 0.00013 47_[+3]_25 chr15:74833321-74833401 0.00018 51_[+3]_21 chr19:18452137-18452217 0.00018 54_[+3]_18 chr11:76092140-76092220 0.00018 72_[+3] chr19:1905182-1905262 0.00018 3_[+3]_69 chr13:52768556-52768636 0.00018 27_[+3]_45 chr8:143751382-143751462 0.00018 17_[+3]_55 chr8:125827915-125827995 0.00022 70_[+3]_2 chr2:27994544-27994624 0.00022 9_[+3]_63 chr14:23120325-23120405 0.00022 49_[+3]_23 chr4:41937098-41937178 0.00022 28_[+3]_44 chr6:31869887-31869967 0.00022 67_[+3]_5 chr19:56110889-56110969 0.0004 34_[+3]_38 chr19:18528506-18528586 0.0004 55_[+3]_17 chr17:46703993-46704073 0.0004 45_[+3]_27 chr16:89787340-89787420 0.0004 69_[+3]_3 chr19:50270040-50270120 0.0004 5_[+3]_67 chr19:56092282-56092362 0.0004 8_[+3]_64 chr17:46059821-46059901 0.0004 32_[+3]_40 chr11:45939379-45939459 0.00051 51_[+3]_21 chr12:6798506-6798586 0.00051 10_[+3]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCCYCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCTCCYCC width=8 seqs=50 chr11:6633487-6633567 ( 64) CCTCCTCC 1 chr3:193857425-193857505 ( 10) CCTCCTCC 1 chr17:7142851-7142931 ( 19) CCTCCTCC 1 chr17:56495002-56495082 ( 27) CCTCCTCC 1 chr17:45899188-45899268 ( 32) CCTCCTCC 1 chr17:73389955-73390035 ( 4) CCTCCTCC 1 chr8:142424964-142425044 ( 69) CCTCCTCC 1 chr19:47615582-47615662 ( 44) CCTCCTCC 1 chr13:41837693-41837773 ( 67) CCTCCTCC 1 chr3:171758212-171758292 ( 45) CCTCCTCC 1 chr17:7388161-7388241 ( 43) CCTCCTCC 1 chr21:40720991-40721071 ( 47) CCTCCTCC 1 chr2:242041730-242041810 ( 3) CCTCCCCC 1 chr19:45542259-45542339 ( 27) CCTCCCCC 1 chr5:154062479-154062559 ( 19) CCTCCCCC 1 chr7:75508173-75508253 ( 13) CCTCCCCC 1 chr2:179387876-179387956 ( 47) CCTCCCCC 1 chr2:48133813-48133893 ( 34) CCTCCCCC 1 chr17:47073401-47073481 ( 10) CCTCCCCC 1 chr5:138309979-138310059 ( 55) CCTCCCCC 1 chr12:53846349-53846429 ( 19) CCTCCCCC 1 chr19:54641606-54641686 ( 53) CCTCCCCC 1 chr13:41345308-41345388 ( 62) CCTCCCCC 1 chr9:35103146-35103226 ( 64) CCTCCCCC 1 chr12:54813048-54813128 ( 44) CCTCCCCC 1 chr15:40331395-40331475 ( 66) CCTCCCCC 1 chr19:18402450-18402530 ( 14) CCTCCCCC 1 chr12:69864085-69864165 ( 54) CCTCCCCC 1 chr3:194041765-194041845 ( 64) CCTCCCCC 1 chr7:6676859-6676939 ( 48) CCTCCCCC 1 chr15:74833321-74833401 ( 52) CTTCCTCC 1 chr19:18452137-18452217 ( 55) TCTCCTCC 1 chr11:76092140-76092220 ( 73) CTTCCTCC 1 chr19:1905182-1905262 ( 4) TCTCCTCC 1 chr13:52768556-52768636 ( 28) TCTCCTCC 1 chr8:143751382-143751462 ( 18) TCTCCTCC 1 chr8:125827915-125827995 ( 71) CCTCCTCT 1 chr2:27994544-27994624 ( 10) CCTCTTCC 1 chr14:23120325-23120405 ( 50) CCTCTTCC 1 chr4:41937098-41937178 ( 29) CCTCTTCC 1 chr6:31869887-31869967 ( 68) CCTCCTCT 1 chr19:56110889-56110969 ( 35) CTTCCCCC 1 chr19:18528506-18528586 ( 56) CCCCCTCC 1 chr17:46703993-46704073 ( 46) CCCCCTCC 1 chr16:89787340-89787420 ( 70) CCCCCTCC 1 chr19:50270040-50270120 ( 6) CCCCCTCC 1 chr19:56092282-56092362 ( 9) CTTCCCCC 1 chr17:46059821-46059901 ( 33) CCCCCTCC 1 chr11:45939379-45939459 ( 52) CCTCCTTC 1 chr12:6798506-6798586 ( 11) CCTCCCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCCYCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.64284 E= 1.6e-003 -1229 144 -1229 -110 -1229 144 -1229 -110 -1229 -176 -1229 239 -1229 156 -1229 -1229 -1229 147 -1229 -151 -1229 31 -1229 176 -1229 153 -1229 -310 -1229 147 -1229 -151 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCCYCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 50 E= 1.6e-003 0.000000 0.920000 0.000000 0.080000 0.000000 0.920000 0.000000 0.080000 0.000000 0.100000 0.000000 0.900000 0.000000 1.000000 0.000000 0.000000 0.000000 0.940000 0.000000 0.060000 0.000000 0.420000 0.000000 0.580000 0.000000 0.980000 0.000000 0.020000 0.000000 0.940000 0.000000 0.060000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCCYCC MEME-3 regular expression -------------------------------------------------------------------------------- CCTCC[TC]CC -------------------------------------------------------------------------------- Time 11.61 secs. ******************************************************************************** ******************************************************************************** MOTIF ATTCTTCA MEME-4 width = 8 sites = 7 llr = 81 E-value = 1.8e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATTCTTCA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 9:::3::a pos.-specific C :::a::9: probability G :::::::: matrix T 1aa:7a1: bits 2.6 ** * * 2.3 ** * * 2.1 *** * * 1.8 *** ** * Relative 1.6 ****** * Entropy 1.3 ****** * (16.6 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel ATTCTTCA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTCTTCA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr22:21457197-21457277 34 2.64e-06 GGATGAGATC ATTCTTCA CTCTGCACCG chr5:138309979-138310059 22 2.64e-06 GAGGGCCTTC ATTCTTCA CTGTCATGCC chr19:56670614-56670694 42 2.64e-06 ccacccacgc attcttca tctacccatc chr7:66675688-66675768 7 5.18e-06 ccatcc attcatca tctgtatgtc chr10:11157467-11157547 50 5.18e-06 CCCTTTAGCT ATTCATCA CTGTTGATTG chr9:125675577-125675657 53 6.51e-06 AACCAGCTTT ATTCTTTA CTGGGGCCCT chr6:31869887-31869967 22 9.27e-06 CCGACCCCCC TTTCTTCA CCAGCACCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTCTTCA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:21457197-21457277 2.6e-06 33_[+4]_39 chr5:138309979-138310059 2.6e-06 21_[+4]_51 chr19:56670614-56670694 2.6e-06 41_[+4]_31 chr7:66675688-66675768 5.2e-06 6_[+4]_66 chr10:11157467-11157547 5.2e-06 49_[+4]_23 chr9:125675577-125675657 6.5e-06 52_[+4]_20 chr6:31869887-31869967 9.3e-06 21_[+4]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTCTTCA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATTCTTCA width=8 seqs=7 chr22:21457197-21457277 ( 34) ATTCTTCA 1 chr5:138309979-138310059 ( 22) ATTCTTCA 1 chr19:56670614-56670694 ( 42) ATTCTTCA 1 chr7:66675688-66675768 ( 7) ATTCATCA 1 chr10:11157467-11157547 ( 50) ATTCATCA 1 chr9:125675577-125675657 ( 53) ATTCTTTA 1 chr6:31869887-31869967 ( 22) TTTCTTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTCTTCA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.9536 E= 1.8e+002 238 -945 -945 -26 -945 -945 -945 254 -945 -945 -945 254 -945 156 -945 -945 80 -945 -945 206 -945 -945 -945 254 -945 133 -945 -26 261 -945 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTCTTCA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.8e+002 0.857143 0.000000 0.000000 0.142857 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.285714 0.000000 0.000000 0.714286 0.000000 0.000000 0.000000 1.000000 0.000000 0.857143 0.000000 0.142857 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTCTTCA MEME-4 regular expression -------------------------------------------------------------------------------- ATTC[TA]TCA -------------------------------------------------------------------------------- Time 14.81 secs. ******************************************************************************** ******************************************************************************** MOTIF TTGTAGTT MEME-5 width = 8 sites = 10 llr = 104 E-value = 1.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTGTAGTT MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::2:7::: pos.-specific C 3::::::2 probability G ::8::a:: matrix T 7a:a3:a8 bits 2.6 * * * 2.3 * * * 2.1 * * * 1.8 * ** * Relative 1.6 * ***** Entropy 1.3 ** ***** (15.1 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TTGTAGTT consensus C A T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTAGTT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:156052281-156052361 54 2.53e-06 ATGCCGGGAG TTGTAGTT TCCCGCCCTT chr5:168006625-168006705 61 2.53e-06 CTGCTGGGGA TTGTAGTT CTCCGGTTCG chr1:155112994-155113074 69 2.53e-06 CTTCTGGGAG TTGTAGTT CACA chr2:27994544-27994624 44 6.45e-06 CCGGAAGCAG TTGTTGTT GGTTGGGGGC chr14:51135257-51135337 71 1.28e-05 CCACGAGTTT TTATTGTT GT chr17:56743934-56744014 9 1.28e-05 attataca ctgtagtt acccacattt chr17:7142851-7142931 62 1.78e-05 ACCAAGGGTT TTGTAGTC CGTCCGGGAA chr19:4066006-4066086 43 1.78e-05 ACCCTGGGAC TTGTAGTC CAAGCCGCTT chr16:9085966-9086046 24 2.04e-05 tggcgcatgc ctatagtt ccaactacag chr11:1372946-1373026 2 2.56e-05 C CTGTTGTT CCTGACACTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTAGTT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:156052281-156052361 2.5e-06 53_[+5]_19 chr5:168006625-168006705 2.5e-06 60_[+5]_12 chr1:155112994-155113074 2.5e-06 68_[+5]_4 chr2:27994544-27994624 6.5e-06 43_[+5]_29 chr14:51135257-51135337 1.3e-05 70_[+5]_2 chr17:56743934-56744014 1.3e-05 8_[+5]_64 chr17:7142851-7142931 1.8e-05 61_[+5]_11 chr19:4066006-4066086 1.8e-05 42_[+5]_30 chr16:9085966-9086046 2e-05 23_[+5]_49 chr11:1372946-1373026 2.6e-05 1_[+5]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTAGTT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTGTAGTT width=8 seqs=10 chr1:156052281-156052361 ( 54) TTGTAGTT 1 chr5:168006625-168006705 ( 61) TTGTAGTT 1 chr1:155112994-155113074 ( 69) TTGTAGTT 1 chr2:27994544-27994624 ( 44) TTGTTGTT 1 chr14:51135257-51135337 ( 71) TTATTGTT 1 chr17:56743934-56744014 ( 9) CTGTAGTT 1 chr17:7142851-7142931 ( 62) TTGTAGTC 1 chr19:4066006-4066086 ( 43) TTGTAGTC 1 chr16:9085966-9086046 ( 24) CTATAGTT 1 chr11:1372946-1373026 ( 2) CTGTTGTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTAGTT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.7767 E= 1.4e+003 -997 -18 -997 203 -997 -997 -997 254 29 -997 130 -997 -997 -997 -997 254 209 -997 -997 81 -997 -997 162 -997 -997 -997 -997 254 -997 -76 -997 222 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTAGTT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 1.4e+003 0.000000 0.300000 0.000000 0.700000 0.000000 0.000000 0.000000 1.000000 0.200000 0.000000 0.800000 0.000000 0.000000 0.000000 0.000000 1.000000 0.700000 0.000000 0.000000 0.300000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.200000 0.000000 0.800000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTAGTT MEME-5 regular expression -------------------------------------------------------------------------------- [TC]T[GA]T[AT]GT[TC] -------------------------------------------------------------------------------- Time 18.03 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:117724429-117724509 5.36e-01 80 chr17:46059821-46059901 6.37e-02 80 chr6:32143858-32143938 2.72e-03 51_[+2(4.37e-05)]_21 chr7:151406908-151406988 1.00e+00 80 chr16:88767449-88767529 1.58e-01 34_[+2(4.37e-05)]_38 chr22:35887646-35887726 2.24e-01 80 chr9:72046905-72046985 8.42e-01 80 chr12:117566198-11756627 7.04e-01 80 chr7:6676859-6676939 3.36e-03 39_[+2(4.37e-05)]_33 chr16:1458267-1458347 9.89e-01 80 chr6:28186735-28186815 1.47e-01 36_[+2(8.63e-05)]_36 chr6:33266745-33266825 3.75e-01 80 chr6:167368821-167368901 1.00e+00 80 chrX:153598035-153598115 8.73e-02 80 chr21:40720991-40721071 7.64e-02 43_[+3(4.44e-05)]_29 chr21:27107927-27108007 2.65e-02 80 chr22:35887912-35887992 2.07e-01 80 chr3:125314421-125314501 5.95e-02 80 chr2:174829225-174829305 8.83e-03 80 chr16:9085966-9086046 6.73e-02 23_[+5(2.04e-05)]_49 chr4:603366-603446 3.92e-01 80 chr13:114753567-11475364 4.21e-01 80 chr12:105629988-10563006 1.39e-01 [+2(4.37e-05)]_21_[+2(1.74e-05)]_22_\ [+2(7.79e-05)]_13 chr4:1723028-1723108 2.03e-01 80 chr14:105266700-10526678 6.64e-01 80 chr19:9517714-9517794 1.67e-01 80 chr8:143751382-143751462 5.49e-03 54_[+1(1.97e-05)]_18 chr3:194041765-194041845 1.26e-01 80 chr19:4066006-4066086 8.04e-02 42_[+5(1.78e-05)]_30 chr11:47574670-47574750 1.14e-01 28_[+1(1.97e-05)]_44 chr12:69864085-69864165 2.25e-03 68_[+2(1.74e-05)]_4 chr9:129567258-129567338 8.37e-02 80 chr7:44084160-44084240 2.89e-01 80 chr16:24740899-24740979 3.80e-03 72_[+1(1.97e-05)] chr11:66139382-66139462 2.60e-01 80 chr12:6798506-6798586 8.01e-04 28_[+2(1.74e-05)]_44 chr12:121342434-12134251 5.62e-01 80 chr13:29233198-29233278 7.88e-04 23_[+1(1.97e-05)]_26_[+2(1.74e-05)]_\ 15 chr3:178865858-178865938 7.83e-03 41_[+1(7.94e-05)]_31 chr19:18402450-18402530 3.60e-03 49_[+2(4.37e-05)]_23 chr6:17600475-17600555 5.24e-03 40_[+1(7.94e-05)]_32 chr6:31869887-31869967 3.45e-03 21_[+4(9.27e-06)]_51 chr10:51572222-51572302 1.00e+00 80 chr19:1028163-1028243 1.80e-01 43_[+2(1.74e-05)]_29 chr19:56092282-56092362 8.69e-03 80 chr7:63386686-63386766 9.19e-01 80 chr9:35732241-35732321 6.31e-02 80 chr15:40331395-40331475 2.25e-02 80 chr17:7388161-7388241 3.95e-02 42_[+3(4.44e-05)]_30 chr1:155112994-155113074 3.47e-05 68_[+5(2.53e-06)]_4 chr10:1102658-1102738 9.10e-02 34_[+1(7.94e-05)]_29_[+1(1.97e-05)]_\ 1 chr2:149402663-149402743 4.83e-01 80 chr9:130700104-130700184 1.83e-01 80 chr3:171758212-171758292 1.72e-01 44_[+3(4.44e-05)]_28 chr17:75003276-75003356 2.24e-02 80 chr12:54813048-54813128 2.95e-02 80 chr9:135282204-135282284 1.33e-03 4_[+2(1.74e-05)]_15_[+2(2.62e-05)]_\ 45 chr17:38479022-38479102 1.78e-01 80 chr7:39663126-39663206 8.37e-02 32_[+2(1.74e-05)]_40 chr9:35103146-35103226 1.41e-05 49_[+1(1.97e-05)]_23 chr19:56670614-56670694 7.09e-03 41_[+4(2.64e-06)]_31 chr8:144349531-144349611 5.27e-02 41_[+2(1.74e-05)]_31 chr11:64692070-64692150 1.27e-01 80 chr8:101962861-101962941 8.66e-01 80 chr1:1209222-1209302 1.20e-01 24_[+1(7.94e-05)]_48 chr10:11936734-11936814 2.52e-02 19_[+2(8.63e-05)]_16_[+2(1.74e-05)]_\ 29 chr2:174829430-174829510 6.44e-02 6_[+3(4.44e-05)]_37_[+3(4.44e-05)]_\ 12_[+3(4.44e-05)]_1 chr19:39127689-39127769 3.13e-02 80 chr19:51963852-51963932 3.07e-03 80 chr14:35761551-35761631 5.89e-03 12_[+2(8.63e-05)]_32_[+1(1.97e-05)]_\ 20 chr11:123612364-12361244 1.78e-01 80 chr8:74884381-74884461 2.71e-02 49_[+1(4.03e-05)]_23 chr6:20403665-20403745 7.75e-01 80 chr13:41837693-41837773 2.74e-03 23_[+1(9.98e-05)]_35_[+3(4.44e-05)]_\ 6 chr1:149514184-149514264 1.03e-01 80 chr14:23775925-23776005 2.12e-01 80 chr19:47615582-47615662 2.93e-02 40_[+3(4.44e-05)]_32 chr15:89089880-89089960 1.02e-02 80 chr21:44394727-44394807 7.07e-01 80 chr13:53191566-53191646 1.82e-01 48_[+2(6.04e-05)]_24 chr6:30650462-30650542 7.47e-02 72_[+1(7.94e-05)] chr10:27443295-27443375 3.80e-03 54_[+1(1.97e-05)]_18 chr8:145980977-145981057 2.93e-03 80 chr20:48532209-48532289 1.33e-01 70_[+2(2.62e-05)]_2 chr12:121342195-12134227 9.95e-01 80 chr1:3663898-3663978 1.46e-01 80 chr19:56632713-56632793 2.26e-01 80 chr5:168006625-168006705 4.52e-04 60_[+5(2.53e-06)]_12 chr13:41345308-41345388 1.27e-02 42_[+1(7.94e-05)]_30 chrX:53285104-53285184 5.70e-01 80 chr5:180237188-180237268 5.55e-04 17_[+1(4.03e-05)]_8_[+2(1.74e-05)]_\ 39 chr19:56186504-56186584 1.77e-02 65_[+1(7.94e-05)]_7 chr8:144766581-144766661 1.43e-02 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chr8:125827915-125827995 1.71e-02 80 chr16:70473169-70473249 5.08e-01 80 chr12:56223377-56223457 7.48e-03 42_[+1(1.97e-05)]_30 chr1:3713083-3713163 4.81e-02 80 chr17:30771410-30771490 4.93e-01 80 chr1:7887413-7887493 3.17e-02 29_[+2(6.04e-05)]_43 chr11:6633487-6633567 1.02e-01 63_[+3(4.44e-05)]_9 chr19:40854348-40854428 7.11e-01 80 chr9:140473339-140473419 1.28e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************