******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/KAT8.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr11:9230688-9230768 1.0000 80 chrX:107408706-107408786 1.0000 80 chr13:22150712-22150792 1.0000 80 chr9:78861747-78861827 1.0000 80 chr3:143216399-143216479 1.0000 80 chr5:81407180-81407260 1.0000 80 chr1:27744838-27744918 1.0000 80 chr18:12928275-12928355 1.0000 80 chr20:49023003-49023083 1.0000 80 chr22:46480882-46480962 1.0000 80 chr2:592890-592970 1.0000 80 chr13:112161363-11216144 1.0000 80 chr4:26348083-26348163 1.0000 80 chr20:61966633-61966713 1.0000 80 chr6:26515236-26515316 1.0000 80 chr17:37768108-37768188 1.0000 80 chr16:56798968-56799048 1.0000 80 chr1:61707187-61707267 1.0000 80 chr5:140723565-140723645 1.0000 80 chr8:29192768-29192848 1.0000 80 chr1:99646101-99646181 1.0000 80 chr6:29526691-29526771 1.0000 80 chr15:37110640-37110720 1.0000 80 chr6:116601945-116602025 1.0000 80 chrX:102470828-102470908 1.0000 80 chr4:79379046-79379126 1.0000 80 chr2:70298207-70298287 1.0000 80 chr20:57449700-57449780 1.0000 80 chr18:9930471-9930551 1.0000 80 chr16:17034396-17034476 1.0000 80 chr7:27200674-27200754 1.0000 80 chrX:120490807-120490887 1.0000 80 chr1:210093206-210093286 1.0000 80 chr2:136744213-136744293 1.0000 80 chrX:130946884-130946964 1.0000 80 chr5:64921721-64921801 1.0000 80 chr2:33755111-33755191 1.0000 80 chr1:202208063-202208143 1.0000 80 chr7:72015681-72015761 1.0000 80 chr8:110477739-110477819 1.0000 80 chr7:39762002-39762082 1.0000 80 chr1:202821493-202821573 1.0000 80 chr22:17163118-17163198 1.0000 80 chr6:27746731-27746811 1.0000 80 chr11:4093988-4094068 1.0000 80 chr12:120110269-12011034 1.0000 80 chr5:140937463-140937543 1.0000 80 chr12:108871445-10887152 1.0000 80 chr5:41843707-41843787 1.0000 80 chr3:113874333-113874413 1.0000 80 chr8:37693110-37693190 1.0000 80 chr20:52532035-52532115 1.0000 80 chr3:142003993-142004073 1.0000 80 chr20:46203965-46204045 1.0000 80 chr1:165571084-165571164 1.0000 80 chr9:33682689-33682769 1.0000 80 chr14:35856220-35856300 1.0000 80 chr22:24861578-24861658 1.0000 80 chr10:21309566-21309646 1.0000 80 chr17:75522994-75523074 1.0000 80 chr22:21301123-21301203 1.0000 80 chr1:156382457-156382537 1.0000 80 chr21:15756295-15756375 1.0000 80 chr7:37952546-37952626 1.0000 80 chr5:148929191-148929271 1.0000 80 chr3:141131206-141131286 1.0000 80 chr6:89130724-89130804 1.0000 80 chr17:37695387-37695467 1.0000 80 chr17:59541105-59541185 1.0000 80 chr16:9186524-9186604 1.0000 80 chr12:14538178-14538258 1.0000 80 chr6:149364852-149364932 1.0000 80 chr18:23501767-23501847 1.0000 80 chr22:21009995-21010075 1.0000 80 chr17:41608311-41608391 1.0000 80 chr9:131495704-131495784 1.0000 80 chr7:20600532-20600612 1.0000 80 chrX:106140693-106140773 1.0000 80 chr17:62596244-62596324 1.0000 80 chr18:3676096-3676176 1.0000 80 chr1:225960011-225960091 1.0000 80 chr16:27210074-27210154 1.0000 80 chr17:7370479-7370559 1.0000 80 chr11:124061056-12406113 1.0000 80 chr11:12728971-12729051 1.0000 80 chr10:51574395-51574475 1.0000 80 chr12:95625200-95625280 1.0000 80 chr1:203591764-203591844 1.0000 80 chr9:71259028-71259108 1.0000 80 chr9:14525230-14525310 1.0000 80 chr10:62539895-62539975 1.0000 80 chr21:20132125-20132205 1.0000 80 chr12:42491842-42491922 1.0000 80 chr2:232316892-232316972 1.0000 80 chr2:170428433-170428513 1.0000 80 chr1:111470302-111470382 1.0000 80 chr12:56586947-56587027 1.0000 80 chr19:13181430-13181510 1.0000 80 chr19:51244468-51244548 1.0000 80 chr11:33182045-33182125 1.0000 80 chr17:53455427-53455507 1.0000 80 chr5:179125125-179125205 1.0000 80 chr16:69761717-69761797 1.0000 80 chr1:112005581-112005661 1.0000 80 chr18:43678061-43678141 1.0000 80 chr20:45980479-45980559 1.0000 80 chr18:73424390-73424470 1.0000 80 chr12:51008053-51008133 1.0000 80 chr2:38380763-38380843 1.0000 80 chr7:67127938-67128018 1.0000 80 chr5:94960218-94960298 1.0000 80 chr3:197482707-197482787 1.0000 80 chr6:30843118-30843198 1.0000 80 chrX:73071488-73071568 1.0000 80 chr6:10314985-10315065 1.0000 80 chr2:170695760-170695840 1.0000 80 chr12:49457709-49457789 1.0000 80 chr2:232527192-232527272 1.0000 80 chr6:27140829-27140909 1.0000 80 chr17:43239416-43239496 1.0000 80 chr19:55073445-55073525 1.0000 80 chr1:223886140-223886220 1.0000 80 chr2:174828195-174828275 1.0000 80 chr3:37181152-37181232 1.0000 80 chr15:34792519-34792599 1.0000 80 chrX:152127476-152127556 1.0000 80 chr6:26402068-26402148 1.0000 80 chr2:224589088-224589168 1.0000 80 chr2:201728920-201729000 1.0000 80 chr1:162597515-162597595 1.0000 80 chr17:74100066-74100146 1.0000 80 chr4:6711413-6711493 1.0000 80 chr3:44965318-44965398 1.0000 80 chr16:4294403-4294483 1.0000 80 chr14:78488622-78488702 1.0000 80 chrX:130962873-130962953 1.0000 80 chrX:123095182-123095262 1.0000 80 chr2:162160341-162160421 1.0000 80 chr17:25432864-25432944 1.0000 80 chr15:45002641-45002721 1.0000 80 chr9:130308911-130308991 1.0000 80 chr19:49851339-49851419 1.0000 80 chr1:224393652-224393732 1.0000 80 chr13:69796436-69796516 1.0000 80 chr6:30687169-30687249 1.0000 80 chr7:8336015-8336095 1.0000 80 chrX:54071104-54071184 1.0000 80 chr15:56092165-56092245 1.0000 80 chr15:45841057-45841137 1.0000 80 chr19:21265250-21265330 1.0000 80 chr2:15996564-15996644 1.0000 80 chr12:72149482-72149562 1.0000 80 chr1:211779766-211779846 1.0000 80 chr1:221899531-221899611 1.0000 80 chr22:50050561-50050641 1.0000 80 chr6:97365162-97365242 1.0000 80 chr3:191377014-191377094 1.0000 80 chr5:81648129-81648209 1.0000 80 chr9:37200054-37200134 1.0000 80 chr4:123524196-123524276 1.0000 80 chr5:58233364-58233444 1.0000 80 chr19:47132401-47132481 1.0000 80 chr1:110089142-110089222 1.0000 80 chr20:558120-558200 1.0000 80 chr15:38839856-38839936 1.0000 80 chr11:60749211-60749291 1.0000 80 chr14:73289850-73289930 1.0000 80 chr7:139045610-139045690 1.0000 80 chr19:46243495-46243575 1.0000 80 chr1:206607622-206607702 1.0000 80 chr5:74808101-74808181 1.0000 80 chr1:17052631-17052711 1.0000 80 chr1:114325453-114325533 1.0000 80 chr6:18415589-18415669 1.0000 80 chr12:53440156-53440236 1.0000 80 chrX:1566380-1566460 1.0000 80 chr2:113017161-113017241 1.0000 80 chr7:113061869-113061949 1.0000 80 chr16:15671130-15671210 1.0000 80 chr14:37440542-37440622 1.0000 80 chr1:70017574-70017654 1.0000 80 chr3:60263173-60263253 1.0000 80 chr2:198299501-198299581 1.0000 80 chr6:28749779-28749859 1.0000 80 chr10:73444431-73444511 1.0000 80 chr16:75682711-75682791 1.0000 80 chr7:26239667-26239747 1.0000 80 chr11:47286773-47286853 1.0000 80 chr11:10879344-10879424 1.0000 80 chr1:21501700-21501780 1.0000 80 chr14:22712022-22712102 1.0000 80 chrX:152110190-152110270 1.0000 80 chr11:73348235-73348315 1.0000 80 chr3:185655188-185655268 1.0000 80 chr9:37300942-37301022 1.0000 80 chr12:70970814-70970894 1.0000 80 chr17:40718757-40718837 1.0000 80 chr1:151547747-151547827 1.0000 80 chr5:148930774-148930854 1.0000 80 chr10:75780754-75780834 1.0000 80 chr15:82162889-82162969 1.0000 80 chr19:19600066-19600146 1.0000 80 chr10:75539920-75540000 1.0000 80 chr22:19464814-19464894 1.0000 80 chr8:66782546-66782626 1.0000 80 chr1:40870412-40870492 1.0000 80 chr7:12781960-12782040 1.0000 80 chr1:6871845-6871925 1.0000 80 chr6:37391915-37391995 1.0000 80 chr10:71076829-71076909 1.0000 80 chr5:39106571-39106651 1.0000 80 chr19:5623164-5623244 1.0000 80 chr15:74392513-74392593 1.0000 80 chr19:47853304-47853384 1.0000 80 chr17:56492076-56492156 1.0000 80 chr19:23941423-23941503 1.0000 80 chr6:28759020-28759100 1.0000 80 chr1:145507363-145507443 1.0000 80 chr1:207258613-207258693 1.0000 80 chr17:25672731-25672811 1.0000 80 chr7:138803493-138803573 1.0000 80 chr7:116655237-116655317 1.0000 80 chr3:9886041-9886121 1.0000 80 chr2:47581710-47581790 1.0000 80 chr17:74230532-74230612 1.0000 80 chr1:61649892-61649972 1.0000 80 chr20:30134892-30134972 1.0000 80 chr1:30703148-30703228 1.0000 80 chr4:154354679-154354759 1.0000 80 chr17:78806937-78807017 1.0000 80 chr10:32635509-32635589 1.0000 80 chr1:221887772-221887852 1.0000 80 chr1:116820923-116821003 1.0000 80 chr4:48199594-48199674 1.0000 80 chr1:16176485-16176565 1.0000 80 chr22:22417185-22417265 1.0000 80 chr11:63708615-63708695 1.0000 80 chr15:93461205-93461285 1.0000 80 chr14:23298932-23299012 1.0000 80 chrX:134975332-134975412 1.0000 80 chr7:86689349-86689429 1.0000 80 chr6:86352514-86352594 1.0000 80 chr17:36453280-36453360 1.0000 80 chr19:51263410-51263490 1.0000 80 chr6:36308888-36308968 1.0000 80 chr3:48754027-48754107 1.0000 80 chr13:20438587-20438667 1.0000 80 chr16:8159788-8159868 1.0000 80 chr12:54867614-54867694 1.0000 80 chr3:101185771-101185851 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_KAT8/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/KAT8.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.262 C 0.243 G 0.235 T 0.26 Background letter frequencies (from file dataset with add-one prior applied): A 0.262 C 0.243 G 0.235 T 0.26 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CAAAATGG MEME-1 width = 8 sites = 121 llr = 980 E-value = 6.4e-105 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAAAATGG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :9a8a::1 pos.-specific C 5::::::: probability G 21:2::a9 matrix T 3::::a:: bits 2.1 1.9 * ** 1.7 * *** 1.5 * **** Relative 1.3 ** **** Entropy 1.0 ******* (11.7 bits) 0.8 ******* 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAAAATGG consensus T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAATGG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:48754027-48754107 68 1.64e-05 ATTCAACACT CAAAATGG CTGCA chr6:36308888-36308968 69 1.64e-05 CGGccattcg caaaatgg ttac chr1:221887772-221887852 5 1.64e-05 tgtt caaaatgg cggctccatc chr11:73348235-73348315 21 1.64e-05 caattccagc caaaatgg ctgctttcca chr3:60263173-60263253 26 1.64e-05 taagcatgct caaaatgg cagctccatc chr14:73289850-73289930 25 1.64e-05 GCTGAGGTTT CAAAATGG CAGCTAGCTG chr20:558120-558200 57 1.64e-05 gtcagaacaa caaaatgg aaggatccca chr5:58233364-58233444 30 1.64e-05 actgggctct caaaatgg cgtcttgctg chr6:97365162-97365242 51 1.64e-05 CTCACTGTCA CAAAATGG TTCCCCTGGA chr1:221899531-221899611 28 1.64e-05 AACTAGCACC CAAAATGG CAGCTAGTAC chr2:15996564-15996644 54 1.64e-05 ACCCAGATGG CAAAATGG CCACCGTGAG chr19:49851339-49851419 58 1.64e-05 ggcagagcca caaaatgg aaggagcctg chr9:130308911-130308991 32 1.64e-05 CGGGCCAAGC CAAAATGG CAGATGTCAG chr16:4294403-4294483 69 1.64e-05 caatcatgtt caaaatgg cggc chr3:44965318-44965398 10 1.64e-05 TGAAGAAGA CAAAATGG TGGGACTAAA chr19:55073445-55073525 15 1.64e-05 gcagatctaa caaaatgg ctgcagatct chr6:30843118-30843198 57 1.64e-05 caatcatgtt caaaatgg cggccccatc chr5:94960218-94960298 61 1.64e-05 cttgaggtca caaaatgg ctgctgcaat chr18:73424390-73424470 66 1.64e-05 CTCTCAGATC CAAAATGG CAGCTGC chr12:56586947-56587027 27 1.64e-05 CCATGGTTTA CAAAATGG AGGATCTGGA chr1:203591764-203591844 51 1.64e-05 CTAGCCAAGG CAAAATGG TAGATATTCA chr17:7370479-7370559 21 1.64e-05 CCAGCCTAGA CAAAATGG CCGCCCCTGC chr18:3676096-3676176 39 1.64e-05 caatcatgtt caaaatgg cagtcccatc chr12:14538178-14538258 71 1.64e-05 GCAGCTGTCT CAAAATGG CT chr6:89130724-89130804 24 1.64e-05 gggccacttc caaaatgg cggcgggcca chr9:33682689-33682769 64 1.64e-05 GCTCACCTCA CAAAATGG CAGTCTCAA chr3:142003993-142004073 73 1.64e-05 tagacatgtt caaaatgg chr3:113874333-113874413 55 1.64e-05 ctgctggccg caaaatgg tgctcttgtg chr5:41843707-41843787 46 1.64e-05 CATCACTGCA CAAAATGG AGCCATGTGA chr5:140937463-140937543 48 1.64e-05 GTCACAAATA CAAAATGG AGTTAGCTGG chr22:17163118-17163198 33 1.64e-05 agacagaaag caaaatgg cggtttccag chr1:202208063-202208143 58 1.64e-05 cgtcagcccc caaaatgg cgtcagcccc chr8:29192768-29192848 35 1.64e-05 ACTAAGGATT CAAAATGG CACCCACGTG chr1:61707187-61707267 27 1.64e-05 AACAAATTCT CAAAATGG TTGCCAAGCT chr16:56798968-56799048 65 1.64e-05 CTCTTCTGCA CAAAATGG TGATCTAG chr9:78861747-78861827 62 1.64e-05 aggccacttc caaaatgg cggcaggccg chr5:39106571-39106651 52 3.40e-05 AACTTTCCAG TAAAATGG ATTTTAAAAA chr1:40870412-40870492 35 3.40e-05 AACTGTAACC TAAAATGG ATATACCACA chr7:113061869-113061949 37 3.40e-05 TTGGCCTCAC TAAAATGG CTGTGTTCCC chr17:25432864-25432944 71 3.40e-05 ATCAGAGGTG TAAAATGG TA chr20:45980479-45980559 23 3.40e-05 GCAGGATTCT TAAAATGG CGTCTGGCAA chr5:179125125-179125205 54 3.40e-05 agtgggttac taaaatgg tggcgtatct chr17:53455427-53455507 45 3.40e-05 ggcttcatcc taaaatgg cctcccccat chr19:13181430-13181510 53 3.40e-05 TGCCAAGGTC TAAAATGG CTGCCagcag chr2:232316892-232316972 40 3.40e-05 ATCACTTTTC TAAAATGG CTCCAAACAC chr12:42491842-42491922 36 3.40e-05 CTTTCAGGCT TAAAATGG CAGCATGATG chr6:27746731-27746811 63 3.40e-05 tctggctacc taaaatgg tggtaagaga chr2:136744213-136744293 72 3.40e-05 ATTtagctct taaaatgg c chr6:116601945-116602025 42 3.40e-05 AAAGGCTAGT TAAAATGG ACAACTAAGA chr1:99646101-99646181 14 3.40e-05 TAGAATATTC TAAAATGG TCTCATTATT chr17:37768108-37768188 41 3.40e-05 TCTGGGCACC TAAAATGG CTGCCTCAGA chr6:26515236-26515316 64 3.40e-05 agcagagaga taaaatgg cttctatca chr20:30134892-30134972 28 4.99e-05 AGAGAAGCTG GAAAATGG CCGTGAGTCG chr11:60749211-60749291 36 4.99e-05 CCTTCTGCCT GAAAATGG CGGCTGAGAG chrX:152127476-152127556 66 4.99e-05 GATCAACAAA GAAAATGG TTGTTTT chr3:197482707-197482787 7 4.99e-05 AAGTAG GAAAATGG AGGCTTCTGT chrX:130946884-130946964 56 4.99e-05 ATGTGAGCCA GAAAATGG AGTACGCCAT chrX:102470828-102470908 41 4.99e-05 GATCTACAGG GAAAATGG TGGGCTTTGC chr18:12928275-12928355 53 4.99e-05 ttagggatga gaaaatgg aggtatgaag chr14:23298932-23299012 65 6.47e-05 TACGATGACC CAAGATGG CGGAGCCG chr3:185655188-185655268 63 6.47e-05 CCCGCCAGCC CAAGATGG CTGCGGCGGA chr6:18415589-18415669 33 6.47e-05 tctctgcttc caagatgg cgtcttactg chr22:50050561-50050641 12 6.47e-05 CACCCCTCAG CAAGATGG AGCCCCAGGT chr15:45841057-45841137 64 6.47e-05 aaggagcaga caagatgg cgcaggtca chrX:123095182-123095262 14 6.47e-05 CGGAGCAGCG CAAGATGG AGGCTCCGCT chr7:67127938-67128018 43 6.47e-05 CATGCATGCT CAAGATGG CTGCTACTTG chr21:20132125-20132205 15 6.47e-05 gagccacttc caagatgg tggcaagccg chr18:23501767-23501847 28 6.47e-05 TGCCTGGCTT CAAGATGG TAGCCATGAA chr22:21301123-21301203 7 6.47e-05 AAACGG CAAGATGG CTGCCAAGCT chr12:108871445-10887152 47 6.47e-05 caatcatgtt caagatgg tggctccatc chr20:61966633-61966713 46 6.47e-05 CCCTTCACCA CAAGATGG CGGATCCCAG chr13:112161363-11216144 29 6.47e-05 ttagagctcc caagatgg cggcgggccg chr19:21265250-21265330 61 9.52e-05 CCTTCAGCCA TAAGATGG CGGCTGCGCT chr1:156382457-156382537 66 9.52e-05 GCCAGTTACC TAAGATGG CGGCCTC chr8:37693110-37693190 73 9.52e-05 GCTCGTCTTC CGAAATGG chr1:202821493-202821573 68 9.52e-05 CCCTCAAGTC TAAGATGG CTGCT chr5:140723565-140723645 57 9.52e-05 CCTGAGTTTC CGAAATGG CAGAGGACTG chr17:25672731-25672811 34 1.09e-04 aaagaaaagg gaagatgg agcctccata chr1:70017574-70017654 15 1.09e-04 caagagaaga gaagatgg agcggccatt chr4:26348083-26348163 28 1.09e-04 aaagagaagg gaagatgg agccgctatc chrX:107408706-107408786 56 1.09e-04 TGTGTGCCCA GAAGATGG CCAGGCTCTT chr20:46203965-46204045 36 1.28e-04 CATTTTGTTT CAAAATGA GGCCATTTTG chr7:86689349-86689429 62 1.44e-04 AGGGTGTGCA TGAAATGG CGGGGAAGAA chrX:152110190-152110270 59 1.44e-04 GTCCACAAAG TGAAATGG CCGCCCGGGA chr15:34792519-34792599 22 1.44e-04 ttactggagg tgaaatgg aagccactga chr18:9930471-9930551 16 1.44e-04 ATTCATGTAG TGAAATGG ACACATTGGA chr6:28759020-28759100 68 1.58e-04 CCCAGGGAGT GGAAATGG AAAGT chr6:28749779-28749859 20 1.58e-04 AAACAGCAGA GGAAATGG CTGCTGTTTC chr3:143216399-143216479 38 1.58e-04 ggataacaga ggaaatgg ccgcctgaaa chr12:53440156-53440236 61 1.71e-04 tgcagtgagc cgagatgg cgccactgca chr3:141131206-141131286 57 2.09e-04 ATTTGTTTTC TAAAATGA AAGCACAGGC chr21:15756295-15756375 6 2.09e-04 GTGGC CAAAATTG ACCTTATGGG chr20:49023003-49023083 58 2.09e-04 TTAGAACAGC TAAAATGA GGCCAGAGAA chr16:8159788-8159868 52 2.27e-04 ctctttgtga gaaaatga tttgaagatg chr6:37391915-37391995 18 2.27e-04 tgttagaaaa gaaaatga tttgggggct chr16:15671130-15671210 21 2.27e-04 tgttagaaaa gaaaatga tttgggggtt chr19:47132401-47132481 41 2.27e-04 tgtgacctga gaaaatga cttcccctag chr2:224589088-224589168 42 2.27e-04 ttgtttgtta gaaaatga tttggggctg chr1:16176485-16176565 33 2.76e-04 GGCCCCTCTG CAAGATGA GGGGGCAGAG chr2:113017161-113017241 69 2.76e-04 tgtggcaacc caaaatgt ctcc chr6:27140829-27140909 43 2.76e-04 CGAATTACAA CAAAATGT CTGGTTTGGA chrX:106140693-106140773 56 2.76e-04 GACAGCGAGA CAAAATGT CTGCCCAGTA chr2:201728920-201729000 55 2.92e-04 AGGCGGTTCA CAACATGG CGCCCGCCCG chr6:149364852-149364932 16 3.21e-04 CGCTGGCACT CCAAATGG TGACCAAGCC chr11:63708615-63708695 33 3.72e-04 TCTTCTGGCC TAAAATTG ACAGTAAGAG chr17:74230532-74230612 3 3.72e-04 tc caaagtgg ctgccccatt chr15:45002641-45002721 64 3.72e-04 AAACTCTCAC TAAAATTG CCGAGCCCT chr2:38380763-38380843 46 3.72e-04 ctcatgtgcc caaaatgc agtcagtagg chr15:37110640-37110720 69 3.72e-04 CCAGCCAACA CAAAATGC CCCC chr11:4093988-4094068 70 3.85e-04 AGCAAGGGAA GGAGATGG CAG chr7:27200674-27200754 43 3.85e-04 CGCGGAGGCG GGAGATGG CGGCGCGGAA chr3:101185771-101185851 31 4.20e-04 ggctacgtgg aaaaatgg gacagtcccg chr10:62539895-62539975 52 4.20e-04 CCAAAATAGA GAAAATTG GAGAAGGTGA chr3:9886041-9886121 54 4.37e-04 tcccccgaac taaactgg cttcatagag chr12:70970814-70970894 71 4.37e-04 CTAAAGACCT TAAACTGG GA chr1:210093206-210093286 40 5.38e-04 tatttccaat taacatgg ttatattgtt chr16:27210074-27210154 64 6.50e-04 tatagacaag caagctgg gagcttgca chr10:73444431-73444511 53 6.81e-04 TGTCGCTAGT GCAAATGG GAGTTCCCAT chr19:5623164-5623244 22 7.12e-04 CGGTTCTGTG GAAAGTGG GCGGCGGAGC chr1:224393652-224393732 24 8.05e-04 aaggtgatcc tgaaatga gtgagaaaag chr2:170428433-170428513 12 8.05e-04 ACTGATGGGT CGAAATTG AAACACTCTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAATGG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:48754027-48754107 1.6e-05 67_[+1]_5 chr6:36308888-36308968 1.6e-05 68_[+1]_4 chr1:221887772-221887852 1.6e-05 4_[+1]_68 chr11:73348235-73348315 1.6e-05 20_[+1]_52 chr3:60263173-60263253 1.6e-05 25_[+1]_47 chr14:73289850-73289930 1.6e-05 24_[+1]_48 chr20:558120-558200 1.6e-05 56_[+1]_16 chr5:58233364-58233444 1.6e-05 29_[+1]_43 chr6:97365162-97365242 1.6e-05 50_[+1]_22 chr1:221899531-221899611 1.6e-05 27_[+1]_45 chr2:15996564-15996644 1.6e-05 53_[+1]_19 chr19:49851339-49851419 1.6e-05 57_[+1]_15 chr9:130308911-130308991 1.6e-05 31_[+1]_41 chr16:4294403-4294483 1.6e-05 68_[+1]_4 chr3:44965318-44965398 1.6e-05 9_[+1]_63 chr19:55073445-55073525 1.6e-05 14_[+1]_58 chr6:30843118-30843198 1.6e-05 56_[+1]_16 chr5:94960218-94960298 1.6e-05 60_[+1]_12 chr18:73424390-73424470 1.6e-05 65_[+1]_7 chr12:56586947-56587027 1.6e-05 26_[+1]_46 chr1:203591764-203591844 1.6e-05 50_[+1]_22 chr17:7370479-7370559 1.6e-05 20_[+1]_52 chr18:3676096-3676176 1.6e-05 38_[+1]_34 chr12:14538178-14538258 1.6e-05 70_[+1]_2 chr6:89130724-89130804 1.6e-05 23_[+1]_49 chr9:33682689-33682769 1.6e-05 63_[+1]_9 chr3:142003993-142004073 1.6e-05 72_[+1] chr3:113874333-113874413 1.6e-05 54_[+1]_18 chr5:41843707-41843787 1.6e-05 45_[+1]_27 chr5:140937463-140937543 1.6e-05 47_[+1]_25 chr22:17163118-17163198 1.6e-05 32_[+1]_40 chr1:202208063-202208143 1.6e-05 57_[+1]_15 chr8:29192768-29192848 1.6e-05 34_[+1]_38 chr1:61707187-61707267 1.6e-05 26_[+1]_46 chr16:56798968-56799048 1.6e-05 64_[+1]_8 chr9:78861747-78861827 1.6e-05 61_[+1]_11 chr5:39106571-39106651 3.4e-05 51_[+1]_21 chr1:40870412-40870492 3.4e-05 34_[+1]_38 chr7:113061869-113061949 3.4e-05 36_[+1]_36 chr17:25432864-25432944 3.4e-05 70_[+1]_2 chr20:45980479-45980559 3.4e-05 22_[+1]_50 chr5:179125125-179125205 3.4e-05 53_[+1]_19 chr17:53455427-53455507 3.4e-05 44_[+1]_28 chr19:13181430-13181510 3.4e-05 52_[+1]_20 chr2:232316892-232316972 3.4e-05 39_[+1]_33 chr12:42491842-42491922 3.4e-05 35_[+1]_37 chr6:27746731-27746811 3.4e-05 62_[+1]_10 chr2:136744213-136744293 3.4e-05 71_[+1]_1 chr6:116601945-116602025 3.4e-05 41_[+1]_31 chr1:99646101-99646181 3.4e-05 13_[+1]_59 chr17:37768108-37768188 3.4e-05 40_[+1]_32 chr6:26515236-26515316 3.4e-05 63_[+1]_9 chr20:30134892-30134972 5e-05 27_[+1]_45 chr11:60749211-60749291 5e-05 35_[+1]_37 chrX:152127476-152127556 5e-05 65_[+1]_7 chr3:197482707-197482787 5e-05 6_[+1]_66 chrX:130946884-130946964 5e-05 55_[+1]_17 chrX:102470828-102470908 5e-05 40_[+1]_32 chr18:12928275-12928355 5e-05 52_[+1]_20 chr14:23298932-23299012 6.5e-05 64_[+1]_8 chr3:185655188-185655268 6.5e-05 62_[+1]_10 chr6:18415589-18415669 6.5e-05 32_[+1]_40 chr22:50050561-50050641 6.5e-05 11_[+1]_61 chr15:45841057-45841137 6.5e-05 63_[+1]_9 chrX:123095182-123095262 6.5e-05 13_[+1]_59 chr7:67127938-67128018 6.5e-05 42_[+1]_30 chr21:20132125-20132205 6.5e-05 14_[+1]_58 chr18:23501767-23501847 6.5e-05 27_[+1]_45 chr22:21301123-21301203 6.5e-05 6_[+1]_66 chr12:108871445-10887152 6.5e-05 46_[+1]_26 chr20:61966633-61966713 6.5e-05 45_[+1]_27 chr13:112161363-11216144 6.5e-05 28_[+1]_44 chr19:21265250-21265330 9.5e-05 60_[+1]_12 chr1:156382457-156382537 9.5e-05 65_[+1]_7 chr8:37693110-37693190 9.5e-05 72_[+1] chr1:202821493-202821573 9.5e-05 67_[+1]_5 chr5:140723565-140723645 9.5e-05 56_[+1]_16 chr17:25672731-25672811 0.00011 33_[+1]_39 chr1:70017574-70017654 0.00011 14_[+1]_58 chr4:26348083-26348163 0.00011 27_[+1]_45 chrX:107408706-107408786 0.00011 55_[+1]_17 chr20:46203965-46204045 0.00013 35_[+1]_37 chr7:86689349-86689429 0.00014 61_[+1]_11 chrX:152110190-152110270 0.00014 58_[+1]_14 chr15:34792519-34792599 0.00014 21_[+1]_51 chr18:9930471-9930551 0.00014 15_[+1]_57 chr6:28759020-28759100 0.00016 67_[+1]_5 chr6:28749779-28749859 0.00016 19_[+1]_53 chr3:143216399-143216479 0.00016 37_[+1]_35 chr12:53440156-53440236 0.00017 60_[+1]_12 chr3:141131206-141131286 0.00021 56_[+1]_16 chr21:15756295-15756375 0.00021 5_[+1]_67 chr20:49023003-49023083 0.00021 57_[+1]_15 chr16:8159788-8159868 0.00023 51_[+1]_21 chr6:37391915-37391995 0.00023 17_[+1]_55 chr16:15671130-15671210 0.00023 20_[+1]_52 chr19:47132401-47132481 0.00023 40_[+1]_32 chr2:224589088-224589168 0.00023 41_[+1]_31 chr1:16176485-16176565 0.00028 32_[+1]_40 chr2:113017161-113017241 0.00028 68_[+1]_4 chr6:27140829-27140909 0.00028 42_[+1]_30 chrX:106140693-106140773 0.00028 55_[+1]_17 chr2:201728920-201729000 0.00029 54_[+1]_18 chr6:149364852-149364932 0.00032 15_[+1]_57 chr11:63708615-63708695 0.00037 32_[+1]_40 chr17:74230532-74230612 0.00037 2_[+1]_70 chr15:45002641-45002721 0.00037 63_[+1]_9 chr2:38380763-38380843 0.00037 45_[+1]_27 chr15:37110640-37110720 0.00037 68_[+1]_4 chr11:4093988-4094068 0.00039 69_[+1]_3 chr7:27200674-27200754 0.00039 42_[+1]_30 chr3:101185771-101185851 0.00042 30_[+1]_42 chr10:62539895-62539975 0.00042 51_[+1]_21 chr3:9886041-9886121 0.00044 53_[+1]_19 chr12:70970814-70970894 0.00044 70_[+1]_2 chr1:210093206-210093286 0.00054 39_[+1]_33 chr16:27210074-27210154 0.00065 63_[+1]_9 chr10:73444431-73444511 0.00068 52_[+1]_20 chr19:5623164-5623244 0.00071 21_[+1]_51 chr1:224393652-224393732 0.00081 23_[+1]_49 chr2:170428433-170428513 0.00081 11_[+1]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAATGG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAAAATGG width=8 seqs=121 chr3:48754027-48754107 ( 68) CAAAATGG 1 chr6:36308888-36308968 ( 69) CAAAATGG 1 chr1:221887772-221887852 ( 5) CAAAATGG 1 chr11:73348235-73348315 ( 21) CAAAATGG 1 chr3:60263173-60263253 ( 26) CAAAATGG 1 chr14:73289850-73289930 ( 25) CAAAATGG 1 chr20:558120-558200 ( 57) CAAAATGG 1 chr5:58233364-58233444 ( 30) CAAAATGG 1 chr6:97365162-97365242 ( 51) CAAAATGG 1 chr1:221899531-221899611 ( 28) CAAAATGG 1 chr2:15996564-15996644 ( 54) CAAAATGG 1 chr19:49851339-49851419 ( 58) CAAAATGG 1 chr9:130308911-130308991 ( 32) CAAAATGG 1 chr16:4294403-4294483 ( 69) CAAAATGG 1 chr3:44965318-44965398 ( 10) CAAAATGG 1 chr19:55073445-55073525 ( 15) CAAAATGG 1 chr6:30843118-30843198 ( 57) CAAAATGG 1 chr5:94960218-94960298 ( 61) CAAAATGG 1 chr18:73424390-73424470 ( 66) CAAAATGG 1 chr12:56586947-56587027 ( 27) CAAAATGG 1 chr1:203591764-203591844 ( 51) CAAAATGG 1 chr17:7370479-7370559 ( 21) CAAAATGG 1 chr18:3676096-3676176 ( 39) CAAAATGG 1 chr12:14538178-14538258 ( 71) CAAAATGG 1 chr6:89130724-89130804 ( 24) CAAAATGG 1 chr9:33682689-33682769 ( 64) CAAAATGG 1 chr3:142003993-142004073 ( 73) CAAAATGG 1 chr3:113874333-113874413 ( 55) CAAAATGG 1 chr5:41843707-41843787 ( 46) CAAAATGG 1 chr5:140937463-140937543 ( 48) CAAAATGG 1 chr22:17163118-17163198 ( 33) CAAAATGG 1 chr1:202208063-202208143 ( 58) CAAAATGG 1 chr8:29192768-29192848 ( 35) CAAAATGG 1 chr1:61707187-61707267 ( 27) CAAAATGG 1 chr16:56798968-56799048 ( 65) CAAAATGG 1 chr9:78861747-78861827 ( 62) CAAAATGG 1 chr5:39106571-39106651 ( 52) TAAAATGG 1 chr1:40870412-40870492 ( 35) TAAAATGG 1 chr7:113061869-113061949 ( 37) TAAAATGG 1 chr17:25432864-25432944 ( 71) TAAAATGG 1 chr20:45980479-45980559 ( 23) TAAAATGG 1 chr5:179125125-179125205 ( 54) TAAAATGG 1 chr17:53455427-53455507 ( 45) TAAAATGG 1 chr19:13181430-13181510 ( 53) TAAAATGG 1 chr2:232316892-232316972 ( 40) TAAAATGG 1 chr12:42491842-42491922 ( 36) TAAAATGG 1 chr6:27746731-27746811 ( 63) TAAAATGG 1 chr2:136744213-136744293 ( 72) TAAAATGG 1 chr6:116601945-116602025 ( 42) TAAAATGG 1 chr1:99646101-99646181 ( 14) TAAAATGG 1 chr17:37768108-37768188 ( 41) TAAAATGG 1 chr6:26515236-26515316 ( 64) TAAAATGG 1 chr20:30134892-30134972 ( 28) GAAAATGG 1 chr11:60749211-60749291 ( 36) GAAAATGG 1 chrX:152127476-152127556 ( 66) GAAAATGG 1 chr3:197482707-197482787 ( 7) GAAAATGG 1 chrX:130946884-130946964 ( 56) GAAAATGG 1 chrX:102470828-102470908 ( 41) GAAAATGG 1 chr18:12928275-12928355 ( 53) GAAAATGG 1 chr14:23298932-23299012 ( 65) CAAGATGG 1 chr3:185655188-185655268 ( 63) CAAGATGG 1 chr6:18415589-18415669 ( 33) CAAGATGG 1 chr22:50050561-50050641 ( 12) CAAGATGG 1 chr15:45841057-45841137 ( 64) CAAGATGG 1 chrX:123095182-123095262 ( 14) CAAGATGG 1 chr7:67127938-67128018 ( 43) CAAGATGG 1 chr21:20132125-20132205 ( 15) CAAGATGG 1 chr18:23501767-23501847 ( 28) CAAGATGG 1 chr22:21301123-21301203 ( 7) CAAGATGG 1 chr12:108871445-10887152 ( 47) CAAGATGG 1 chr20:61966633-61966713 ( 46) CAAGATGG 1 chr13:112161363-11216144 ( 29) CAAGATGG 1 chr19:21265250-21265330 ( 61) TAAGATGG 1 chr1:156382457-156382537 ( 66) TAAGATGG 1 chr8:37693110-37693190 ( 73) CGAAATGG 1 chr1:202821493-202821573 ( 68) TAAGATGG 1 chr5:140723565-140723645 ( 57) CGAAATGG 1 chr17:25672731-25672811 ( 34) GAAGATGG 1 chr1:70017574-70017654 ( 15) GAAGATGG 1 chr4:26348083-26348163 ( 28) GAAGATGG 1 chrX:107408706-107408786 ( 56) GAAGATGG 1 chr20:46203965-46204045 ( 36) CAAAATGA 1 chr7:86689349-86689429 ( 62) TGAAATGG 1 chrX:152110190-152110270 ( 59) TGAAATGG 1 chr15:34792519-34792599 ( 22) TGAAATGG 1 chr18:9930471-9930551 ( 16) TGAAATGG 1 chr6:28759020-28759100 ( 68) GGAAATGG 1 chr6:28749779-28749859 ( 20) GGAAATGG 1 chr3:143216399-143216479 ( 38) GGAAATGG 1 chr12:53440156-53440236 ( 61) CGAGATGG 1 chr3:141131206-141131286 ( 57) TAAAATGA 1 chr21:15756295-15756375 ( 6) CAAAATTG 1 chr20:49023003-49023083 ( 58) TAAAATGA 1 chr16:8159788-8159868 ( 52) GAAAATGA 1 chr6:37391915-37391995 ( 18) GAAAATGA 1 chr16:15671130-15671210 ( 21) GAAAATGA 1 chr19:47132401-47132481 ( 41) GAAAATGA 1 chr2:224589088-224589168 ( 42) GAAAATGA 1 chr1:16176485-16176565 ( 33) CAAGATGA 1 chr2:113017161-113017241 ( 69) CAAAATGT 1 chr6:27140829-27140909 ( 43) CAAAATGT 1 chrX:106140693-106140773 ( 56) CAAAATGT 1 chr2:201728920-201729000 ( 55) CAACATGG 1 chr6:149364852-149364932 ( 16) CCAAATGG 1 chr11:63708615-63708695 ( 33) TAAAATTG 1 chr17:74230532-74230612 ( 3) CAAAGTGG 1 chr15:45002641-45002721 ( 64) TAAAATTG 1 chr2:38380763-38380843 ( 46) CAAAATGC 1 chr15:37110640-37110720 ( 69) CAAAATGC 1 chr11:4093988-4094068 ( 70) GGAGATGG 1 chr7:27200674-27200754 ( 43) GGAGATGG 1 chr3:101185771-101185851 ( 31) AAAAATGG 1 chr10:62539895-62539975 ( 52) GAAAATTG 1 chr3:9886041-9886121 ( 54) TAAACTGG 1 chr12:70970814-70970894 ( 71) TAAACTGG 1 chr1:210093206-210093286 ( 40) TAACATGG 1 chr16:27210074-27210154 ( 64) CAAGCTGG 1 chr10:73444431-73444511 ( 53) GCAAATGG 1 chr19:5623164-5623244 ( 22) GAAAGTGG 1 chr1:224393652-224393732 ( 24) TGAAATGA 1 chr2:170428433-170428513 ( 12) CGAAATTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAATGG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.91314 E= 6.4e-105 -498 115 -25 -2 173 -387 -102 -1356 193 -1356 -1356 -1356 157 -387 -19 -1356 187 -329 -383 -1356 -1356 -1356 -1356 194 -1356 -1356 203 -265 -166 -387 190 -339 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAATGG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 121 E= 6.4e-105 0.008264 0.537190 0.198347 0.256198 0.867769 0.016529 0.115702 0.000000 1.000000 0.000000 0.000000 0.000000 0.776860 0.016529 0.206612 0.000000 0.958678 0.024793 0.016529 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.958678 0.041322 0.082645 0.016529 0.876033 0.024793 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAATGG MEME-1 regular expression -------------------------------------------------------------------------------- [CT]AA[AG]ATGG -------------------------------------------------------------------------------- Time 5.17 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCATTTT MEME-2 width = 8 sites = 103 llr = 839 E-value = 5.3e-079 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCATTTT MEME-2 Description -------------------------------------------------------------------------------- Simplified A 11:a:::: pos.-specific C 19a:13:1 probability G 6::::::1 matrix T 3:::97a8 bits 2.1 * 1.9 ** * 1.7 *** * 1.5 **** * Relative 1.3 **** * Entropy 1.0 ******* (11.7 bits) 0.8 ******* 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCCATTTT consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATTTT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr15:93461205-93461285 41 1.66e-05 AACCAGTTCG GCCATTTT GTAAGTTAGC chr1:61649892-61649972 16 1.66e-05 GGTTCAGGCC GCCATTTT AAGGAGCCAG chr1:6871845-6871925 45 1.66e-05 GGCTGTGGCT GCCATTTT CTTGGCGTCC chr8:66782546-66782626 39 1.66e-05 tggggctgac gccatttt aggcctcagg chr3:185655188-185655268 23 1.66e-05 CGGCTTCTCC GCCATTTT GTGCCTCTGG chr1:70017574-70017654 27 1.66e-05 agatggagcg gccatttt gatcatgcct chr1:206607622-206607702 39 1.66e-05 AAAACAAACC GCCATTTT CATGAGGAAG chr1:110089142-110089222 12 1.66e-05 TTGCCTGGCA GCCATTTT GTTAATTTAT chr4:123524196-123524276 20 1.66e-05 TTTCCCACAC GCCATTTT GTCAATGATT chr3:191377014-191377094 28 1.66e-05 gtggcccacc gccatttt ggaagtggcc chr2:15996564-15996644 31 1.66e-05 AAACCAGGAA GCCATTTT GGACTACCCA chr15:56092165-56092245 16 1.66e-05 AAACATGGCA GCCATTTT GTTTTGGGTG chr17:25432864-25432944 42 1.66e-05 TAATGATGAG GCCATTTT GATTCAGTTT chr6:10314985-10315065 40 1.66e-05 TCTGACGTCA GCCATTTT GCAAGGGGAC chr9:71259028-71259108 12 1.66e-05 cctgtgggca gccatttt gtctcaggga chr21:15756295-15756375 43 1.66e-05 TAACGTGACA GCCATTTT AGGACGCTTG chr22:21301123-21301203 29 1.66e-05 CAAGCTACCA GCCATTTT AGGATCTGAG chr17:75522994-75523074 43 1.66e-05 GCTGCGAGCA GCCATTTT GGAACATGTG chr20:46203965-46204045 45 1.66e-05 TCAAAATGAG GCCATTTT GTAAAAAGAA chr2:33755111-33755191 41 1.66e-05 GAGCCCAGCG GCCATTTT AGGAAGCACA chrX:130946884-130946964 22 1.66e-05 AAAGAAGGAT GCCATTTT GGTTACTTTC chr6:29526691-29526771 13 1.66e-05 gcggcctgcg gccatttt ggaagcagcc chr17:37768108-37768188 68 1.66e-05 AGGGGTGGCA GCCATTTT GTACA chr2:592890-592970 42 1.66e-05 gtgggccgcc gccatttt ggaagcgacc chr18:12928275-12928355 70 1.66e-05 gaggtatgaa gccatttt aag chr3:143216399-143216479 19 1.66e-05 gctgctggca gccatttt gggataacag chr12:54867614-54867694 41 3.21e-05 TTTTGTGGCG GCCATCTT AGAAAAGGCA chrX:1566380-1566460 72 3.21e-05 GACACACACG GCCATCTT G chr2:201728920-201729000 25 3.21e-05 CCGCCCAGCC GCCATCTT ACAGCTCCGC chr5:94960218-94960298 11 3.21e-05 tttccagtct gccatctt gagtggtgga chr9:131495704-131495784 34 3.21e-05 CCGTGCGGTC GCCATCTT AATTATGTCC chr12:14538178-14538258 25 3.21e-05 GCACATTGCA GCCATCTT AATTACACTT chr1:156382457-156382537 42 3.21e-05 TGGTCAGGCA GCCATCTT ACAGGCGCCA chr14:35856220-35856300 7 3.21e-05 ggagcc gccatctt gaacatgatt chr7:72015681-72015761 45 3.21e-05 agctgtggtg gccatctt gagaccatga chr2:136744213-136744293 18 3.21e-05 TGATAGATGC GCCATCTT GATACATGCT chr15:37110640-37110720 39 3.21e-05 CGCCGACGAC GCCATCTT GTTACTCCAG chr17:56492076-56492156 55 5.05e-05 ACACCTTGTG TCCATTTT GTAATCCAGT chr19:19600066-19600146 37 5.05e-05 GCCTGGCGCC TCCATTTT CTGACAGTAC chr19:46243495-46243575 9 5.05e-05 tagccacc tccatttt gtaaaggagg chr15:38839856-38839936 29 5.05e-05 ACCATTATTC TCCATTTT AAAAACGGGC chr12:72149482-72149562 35 5.05e-05 TTATGCAAGT TCCATTTT GTCCTGAGTA chrX:54071104-54071184 4 5.05e-05 GGC TCCATTTT GAGTGGGGCC chr3:37181152-37181232 12 5.05e-05 atacacaccc tccatttt atgatgtcct chr2:174828195-174828275 24 5.05e-05 TGCTCAAACA TCCATTTT GGAGTCCTCT chr12:51008053-51008133 7 5.05e-05 tctgcc tccatttt cctcattctc chr1:165571084-165571164 5 5.05e-05 TGAC TCCATTTT GCATAAGGGC chr8:110477739-110477819 57 5.05e-05 ttagaatgcc tccatttt aaactcagtt chr5:64921721-64921801 36 5.05e-05 ACTTATGGCA TCCATTTT GAGGAACGCC chr6:26515236-26515316 27 5.05e-05 cagtgcagtc tccatttt acaaataaag chr1:221887772-221887852 17 6.77e-05 aaatggcggc tccatctt cccttctctg chr3:60263173-60263253 38 6.77e-05 aaatggcagc tccatctt cccttttctt chr14:37440542-37440622 39 6.77e-05 aactggtggc tccatctt ctcttttctt chr15:45841057-45841137 19 6.77e-05 aaacagaggc tccatctt cccttctctg chr20:57449700-57449780 17 6.77e-05 TGGCCTGCCC TCCATCTT AGCTCCTGGC chr16:56798968-56799048 19 6.77e-05 ATCCCTATCT TCCATCTT GTTTCTGTTC chr11:10879344-10879424 16 8.32e-05 CCAGGAAGCG GCCATTTC AGAGCGCACC chrX:152127476-152127556 3 8.32e-05 CC GCCATTTC CTGCAGCCGC chr2:232527192-232527272 5 8.32e-05 GCCC GCCATTTC GTGCTCCGCC chrX:106140693-106140773 20 8.32e-05 AGGACTGGAA GCCATTTC AGGACAGGGG chr5:148929191-148929271 25 8.32e-05 CAAAAGAGCA GCCATTTC CCAAGCCAGC chr1:116820923-116821003 14 1.02e-04 actcagggcc accatttt gaggagtctg chr7:12781960-12782040 21 1.02e-04 tctggtaacc accatttt atcttctgtg chr11:124061056-12406113 26 1.02e-04 gacaaacacc accatttt aagttccagc chr6:116601945-116602025 18 1.02e-04 GCCACATACC ACCATTTT GTGAGGAAAG chr20:49023003-49023083 22 1.02e-04 CACAAAAGCC ACCATTTT AGAAGAGCTA chr17:78806937-78807017 61 1.16e-04 CTGGGCACCC GCCATCTC AGGGCTGTTT chr17:74230532-74230612 15 1.48e-04 aagtggctgc cccatttt acattcacac chr7:139045610-139045690 34 1.48e-04 TGTGTTTGGC CCCATTTT GTGAGAAGGA chr2:162160341-162160421 17 1.48e-04 gagccaagca gccatttg ctgactggag chr17:59541105-59541185 46 1.48e-04 CCAGGGCTGC CCCATTTT GTGGCTGTTT chr22:46480882-46480962 52 1.48e-04 CTGGGCGCCG GCCATTTG CAGACTGGGA chr13:22150712-22150792 59 1.48e-04 GCCCTGCTCC CCCATTTT CTGTGACCCA chrX:134975332-134975412 22 1.81e-04 TCAGAGTGGA GCCACTTT CCCAGGGAAC chr7:116655237-116655317 49 1.81e-04 TGTTGTTTCT TCCATTTC AGTTGGATCA chr10:75780754-75780834 34 1.81e-04 ATGAACATGT GCCACTTT GGAAATAAGA chr1:114325453-114325533 41 1.81e-04 agttctgact tccatttc cctgatgatg chr7:37952546-37952626 33 1.81e-04 TGTCTTGGAT TCCATTTC AGGAAGCCAG chr14:22712022-22712102 7 1.98e-04 cttgcc accatctt aggagctctg chr13:69796436-69796516 52 1.98e-04 gcagcctgcc accatctt ggaagtggct chrX:120490807-120490887 12 1.98e-04 gcagcccgcc accatctt gggagctcta chr17:25672731-25672811 60 2.16e-04 tattgaacat gacatttt ggcccccagg chr16:69761717-69761797 19 2.16e-04 gccCCATCGT GACATTTT TGCATTCATT chr4:79379046-79379126 36 2.16e-04 CAGGGAAGTG GACATTTT GTCCAGAAGC chr14:73289850-73289930 46 2.46e-04 CTAGCTGGAC GCCATCTG GTCTAAATCT chr18:3676096-3676176 51 2.46e-04 aaatggcagt cccatctt tcctctgcca chr4:154354679-154354759 11 2.77e-04 ggagtttgag gccacctt gggcaacaca chr11:47286773-47286853 63 2.77e-04 agagcaagac tccatctc aaaaaaagaa chr11:12728971-12729051 49 2.77e-04 TCACTCTCAG GCCACCTT CTGAAACTTA chr12:108871445-10887152 59 2.77e-04 agatggtggc tccatctc cccttctctt chr22:22417185-22417265 10 2.94e-04 cattatttc tccatttg ctcaaagaaa chr19:55073445-55073525 60 3.28e-04 GAGCCgaata gacatctt tccaaagaca chr10:21309566-21309646 45 3.28e-04 ACAACCAACA GACATCTT GTAGTCCTCC chr7:27200674-27200754 8 3.28e-04 TCAAGTC GACATCTT AGGAACTTCA chr5:81407180-81407260 29 3.28e-04 gtggtataca gacatctt gcttatgcag chr22:24861578-24861658 64 3.80e-04 TTAAATCCTA TCCATCTG GCAAGGtat chr6:28759020-28759100 36 4.12e-04 TGCTGACACA TCCACCTT GGGTGGTACA chr1:221899531-221899611 45 4.12e-04 GCAGCTAGTA CCCATTTC TCTAAATGGG chr21:20132125-20132205 7 4.27e-04 tggcga gccacttc caagatggtg chr6:89130724-89130804 38 4.27e-04 atggcggcgg gccacttc caagatggtg chr9:78861747-78861827 54 4.27e-04 atggtggcag gccacttc caaaatggcg chr2:232316892-232316972 10 4.95e-04 GTGGCGACA ACCATTTG CAGAAGAAAA chr3:48754027-48754107 35 6.54e-04 CTCATCGAAC ACCATCTG ACGGGCCCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATTTT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:93461205-93461285 1.7e-05 40_[+2]_32 chr1:61649892-61649972 1.7e-05 15_[+2]_57 chr1:6871845-6871925 1.7e-05 44_[+2]_28 chr8:66782546-66782626 1.7e-05 38_[+2]_34 chr3:185655188-185655268 1.7e-05 22_[+2]_50 chr1:70017574-70017654 1.7e-05 26_[+2]_46 chr1:206607622-206607702 1.7e-05 38_[+2]_34 chr1:110089142-110089222 1.7e-05 11_[+2]_61 chr4:123524196-123524276 1.7e-05 19_[+2]_53 chr3:191377014-191377094 1.7e-05 27_[+2]_45 chr2:15996564-15996644 1.7e-05 30_[+2]_42 chr15:56092165-56092245 1.7e-05 15_[+2]_57 chr17:25432864-25432944 1.7e-05 41_[+2]_31 chr6:10314985-10315065 1.7e-05 39_[+2]_33 chr9:71259028-71259108 1.7e-05 11_[+2]_61 chr21:15756295-15756375 1.7e-05 42_[+2]_30 chr22:21301123-21301203 1.7e-05 28_[+2]_44 chr17:75522994-75523074 1.7e-05 42_[+2]_30 chr20:46203965-46204045 1.7e-05 44_[+2]_28 chr2:33755111-33755191 1.7e-05 40_[+2]_32 chrX:130946884-130946964 1.7e-05 21_[+2]_51 chr6:29526691-29526771 1.7e-05 12_[+2]_60 chr17:37768108-37768188 1.7e-05 67_[+2]_5 chr2:592890-592970 1.7e-05 41_[+2]_31 chr18:12928275-12928355 1.7e-05 69_[+2]_3 chr3:143216399-143216479 1.7e-05 18_[+2]_54 chr12:54867614-54867694 3.2e-05 40_[+2]_32 chrX:1566380-1566460 3.2e-05 71_[+2]_1 chr2:201728920-201729000 3.2e-05 24_[+2]_48 chr5:94960218-94960298 3.2e-05 10_[+2]_62 chr9:131495704-131495784 3.2e-05 33_[+2]_39 chr12:14538178-14538258 3.2e-05 24_[+2]_48 chr1:156382457-156382537 3.2e-05 41_[+2]_31 chr14:35856220-35856300 3.2e-05 6_[+2]_66 chr7:72015681-72015761 3.2e-05 44_[+2]_28 chr2:136744213-136744293 3.2e-05 17_[+2]_55 chr15:37110640-37110720 3.2e-05 38_[+2]_34 chr17:56492076-56492156 5.1e-05 54_[+2]_18 chr19:19600066-19600146 5.1e-05 36_[+2]_36 chr19:46243495-46243575 5.1e-05 8_[+2]_64 chr15:38839856-38839936 5.1e-05 28_[+2]_44 chr12:72149482-72149562 5.1e-05 34_[+2]_38 chrX:54071104-54071184 5.1e-05 3_[+2]_69 chr3:37181152-37181232 5.1e-05 11_[+2]_61 chr2:174828195-174828275 5.1e-05 23_[+2]_49 chr12:51008053-51008133 5.1e-05 6_[+2]_66 chr1:165571084-165571164 5.1e-05 4_[+2]_68 chr8:110477739-110477819 5.1e-05 56_[+2]_16 chr5:64921721-64921801 5.1e-05 35_[+2]_37 chr6:26515236-26515316 5.1e-05 26_[+2]_46 chr1:221887772-221887852 6.8e-05 16_[+2]_56 chr3:60263173-60263253 6.8e-05 37_[+2]_35 chr14:37440542-37440622 6.8e-05 38_[+2]_34 chr15:45841057-45841137 6.8e-05 18_[+2]_54 chr20:57449700-57449780 6.8e-05 16_[+2]_56 chr16:56798968-56799048 6.8e-05 18_[+2]_54 chr11:10879344-10879424 8.3e-05 15_[+2]_57 chrX:152127476-152127556 8.3e-05 2_[+2]_70 chr2:232527192-232527272 8.3e-05 4_[+2]_68 chrX:106140693-106140773 8.3e-05 19_[+2]_53 chr5:148929191-148929271 8.3e-05 24_[+2]_48 chr1:116820923-116821003 0.0001 13_[+2]_59 chr7:12781960-12782040 0.0001 20_[+2]_52 chr11:124061056-12406113 0.0001 25_[+2]_47 chr6:116601945-116602025 0.0001 17_[+2]_55 chr20:49023003-49023083 0.0001 21_[+2]_51 chr17:78806937-78807017 0.00012 60_[+2]_12 chr17:74230532-74230612 0.00015 14_[+2]_58 chr7:139045610-139045690 0.00015 33_[+2]_39 chr2:162160341-162160421 0.00015 16_[+2]_56 chr17:59541105-59541185 0.00015 45_[+2]_27 chr22:46480882-46480962 0.00015 51_[+2]_21 chr13:22150712-22150792 0.00015 58_[+2]_14 chrX:134975332-134975412 0.00018 21_[+2]_51 chr7:116655237-116655317 0.00018 48_[+2]_24 chr10:75780754-75780834 0.00018 33_[+2]_39 chr1:114325453-114325533 0.00018 40_[+2]_32 chr7:37952546-37952626 0.00018 32_[+2]_40 chr14:22712022-22712102 0.0002 6_[+2]_66 chr13:69796436-69796516 0.0002 51_[+2]_21 chrX:120490807-120490887 0.0002 11_[+2]_61 chr17:25672731-25672811 0.00022 59_[+2]_13 chr16:69761717-69761797 0.00022 18_[+2]_54 chr4:79379046-79379126 0.00022 35_[+2]_37 chr14:73289850-73289930 0.00025 45_[+2]_27 chr18:3676096-3676176 0.00025 50_[+2]_22 chr4:154354679-154354759 0.00028 10_[+2]_62 chr11:47286773-47286853 0.00028 62_[+2]_10 chr11:12728971-12729051 0.00028 48_[+2]_24 chr12:108871445-10887152 0.00028 58_[+2]_14 chr22:22417185-22417265 0.00029 9_[+2]_63 chr19:55073445-55073525 0.00033 59_[+2]_13 chr10:21309566-21309646 0.00033 44_[+2]_28 chr7:27200674-27200754 0.00033 7_[+2]_65 chr5:81407180-81407260 0.00033 28_[+2]_44 chr22:24861578-24861658 0.00038 63_[+2]_9 chr6:28759020-28759100 0.00041 35_[+2]_37 chr1:221899531-221899611 0.00041 44_[+2]_28 chr21:20132125-20132205 0.00043 6_[+2]_66 chr6:89130724-89130804 0.00043 37_[+2]_35 chr9:78861747-78861827 0.00043 53_[+2]_19 chr2:232316892-232316972 0.0005 9_[+2]_63 chr3:48754027-48754107 0.00065 34_[+2]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATTTT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCATTTT width=8 seqs=103 chr15:93461205-93461285 ( 41) GCCATTTT 1 chr1:61649892-61649972 ( 16) GCCATTTT 1 chr1:6871845-6871925 ( 45) GCCATTTT 1 chr8:66782546-66782626 ( 39) GCCATTTT 1 chr3:185655188-185655268 ( 23) GCCATTTT 1 chr1:70017574-70017654 ( 27) GCCATTTT 1 chr1:206607622-206607702 ( 39) GCCATTTT 1 chr1:110089142-110089222 ( 12) GCCATTTT 1 chr4:123524196-123524276 ( 20) GCCATTTT 1 chr3:191377014-191377094 ( 28) GCCATTTT 1 chr2:15996564-15996644 ( 31) GCCATTTT 1 chr15:56092165-56092245 ( 16) GCCATTTT 1 chr17:25432864-25432944 ( 42) GCCATTTT 1 chr6:10314985-10315065 ( 40) GCCATTTT 1 chr9:71259028-71259108 ( 12) GCCATTTT 1 chr21:15756295-15756375 ( 43) GCCATTTT 1 chr22:21301123-21301203 ( 29) GCCATTTT 1 chr17:75522994-75523074 ( 43) GCCATTTT 1 chr20:46203965-46204045 ( 45) GCCATTTT 1 chr2:33755111-33755191 ( 41) GCCATTTT 1 chrX:130946884-130946964 ( 22) GCCATTTT 1 chr6:29526691-29526771 ( 13) GCCATTTT 1 chr17:37768108-37768188 ( 68) GCCATTTT 1 chr2:592890-592970 ( 42) GCCATTTT 1 chr18:12928275-12928355 ( 70) GCCATTTT 1 chr3:143216399-143216479 ( 19) GCCATTTT 1 chr12:54867614-54867694 ( 41) GCCATCTT 1 chrX:1566380-1566460 ( 72) GCCATCTT 1 chr2:201728920-201729000 ( 25) GCCATCTT 1 chr5:94960218-94960298 ( 11) GCCATCTT 1 chr9:131495704-131495784 ( 34) GCCATCTT 1 chr12:14538178-14538258 ( 25) GCCATCTT 1 chr1:156382457-156382537 ( 42) GCCATCTT 1 chr14:35856220-35856300 ( 7) GCCATCTT 1 chr7:72015681-72015761 ( 45) GCCATCTT 1 chr2:136744213-136744293 ( 18) GCCATCTT 1 chr15:37110640-37110720 ( 39) GCCATCTT 1 chr17:56492076-56492156 ( 55) TCCATTTT 1 chr19:19600066-19600146 ( 37) TCCATTTT 1 chr19:46243495-46243575 ( 9) TCCATTTT 1 chr15:38839856-38839936 ( 29) TCCATTTT 1 chr12:72149482-72149562 ( 35) TCCATTTT 1 chrX:54071104-54071184 ( 4) TCCATTTT 1 chr3:37181152-37181232 ( 12) TCCATTTT 1 chr2:174828195-174828275 ( 24) TCCATTTT 1 chr12:51008053-51008133 ( 7) TCCATTTT 1 chr1:165571084-165571164 ( 5) TCCATTTT 1 chr8:110477739-110477819 ( 57) TCCATTTT 1 chr5:64921721-64921801 ( 36) TCCATTTT 1 chr6:26515236-26515316 ( 27) TCCATTTT 1 chr1:221887772-221887852 ( 17) TCCATCTT 1 chr3:60263173-60263253 ( 38) TCCATCTT 1 chr14:37440542-37440622 ( 39) TCCATCTT 1 chr15:45841057-45841137 ( 19) TCCATCTT 1 chr20:57449700-57449780 ( 17) TCCATCTT 1 chr16:56798968-56799048 ( 19) TCCATCTT 1 chr11:10879344-10879424 ( 16) GCCATTTC 1 chrX:152127476-152127556 ( 3) GCCATTTC 1 chr2:232527192-232527272 ( 5) GCCATTTC 1 chrX:106140693-106140773 ( 20) GCCATTTC 1 chr5:148929191-148929271 ( 25) GCCATTTC 1 chr1:116820923-116821003 ( 14) ACCATTTT 1 chr7:12781960-12782040 ( 21) ACCATTTT 1 chr11:124061056-12406113 ( 26) ACCATTTT 1 chr6:116601945-116602025 ( 18) ACCATTTT 1 chr20:49023003-49023083 ( 22) ACCATTTT 1 chr17:78806937-78807017 ( 61) GCCATCTC 1 chr17:74230532-74230612 ( 15) CCCATTTT 1 chr7:139045610-139045690 ( 34) CCCATTTT 1 chr2:162160341-162160421 ( 17) GCCATTTG 1 chr17:59541105-59541185 ( 46) CCCATTTT 1 chr22:46480882-46480962 ( 52) GCCATTTG 1 chr13:22150712-22150792 ( 59) CCCATTTT 1 chrX:134975332-134975412 ( 22) GCCACTTT 1 chr7:116655237-116655317 ( 49) TCCATTTC 1 chr10:75780754-75780834 ( 34) GCCACTTT 1 chr1:114325453-114325533 ( 41) TCCATTTC 1 chr7:37952546-37952626 ( 33) TCCATTTC 1 chr14:22712022-22712102 ( 7) ACCATCTT 1 chr13:69796436-69796516 ( 52) ACCATCTT 1 chrX:120490807-120490887 ( 12) ACCATCTT 1 chr17:25672731-25672811 ( 60) GACATTTT 1 chr16:69761717-69761797 ( 19) GACATTTT 1 chr4:79379046-79379126 ( 36) GACATTTT 1 chr14:73289850-73289930 ( 46) GCCATCTG 1 chr18:3676096-3676176 ( 51) CCCATCTT 1 chr4:154354679-154354759 ( 11) GCCACCTT 1 chr11:47286773-47286853 ( 63) TCCATCTC 1 chr11:12728971-12729051 ( 49) GCCACCTT 1 chr12:108871445-10887152 ( 59) TCCATCTC 1 chr22:22417185-22417265 ( 10) TCCATTTG 1 chr19:55073445-55073525 ( 60) GACATCTT 1 chr10:21309566-21309646 ( 45) GACATCTT 1 chr7:27200674-27200754 ( 8) GACATCTT 1 chr5:81407180-81407260 ( 29) GACATCTT 1 chr22:24861578-24861658 ( 64) TCCATCTG 1 chr6:28759020-28759100 ( 36) TCCACCTT 1 chr1:221899531-221899611 ( 45) CCCATTTC 1 chr21:20132125-20132205 ( 7) GCCACTTC 1 chr6:89130724-89130804 ( 38) GCCACTTC 1 chr9:78861747-78861827 ( 54) GCCACTTC 1 chr2:232316892-232316972 ( 10) ACCATTTG 1 chr3:48754027-48754107 ( 35) ACCATCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATTTT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.09119 E= 5.3e-079 -143 -206 131 1 -195 194 -1333 -1333 -1333 204 -1333 -1333 193 -1333 -1333 -1333 -1333 -164 -1333 183 -1333 44 -1333 137 -1333 -1333 -1333 194 -1333 -74 -179 160 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATTTT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 103 E= 5.3e-079 0.097087 0.058252 0.582524 0.262136 0.067961 0.932039 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.077670 0.000000 0.922330 0.000000 0.330097 0.000000 0.669903 0.000000 0.000000 0.000000 1.000000 0.000000 0.145631 0.067961 0.786408 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATTTT MEME-2 regular expression -------------------------------------------------------------------------------- [GT]CCAT[TC]TT -------------------------------------------------------------------------------- Time 8.75 secs. ******************************************************************************** ******************************************************************************** MOTIF ATGGCKGC MEME-3 width = 8 sites = 25 llr = 219 E-value = 7.8e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATGGCKGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A a:::1::1 pos.-specific C :::18:19 probability G ::a9:69: matrix T :a::14:: bits 2.1 * 1.9 ** 1.7 *** * 1.5 **** ** Relative 1.3 **** ** Entropy 1.0 ******** (12.7 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ATGGCGGC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGCKGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:61649892-61649972 59 1.23e-05 CGCTCCTTAC ATGGCGGC TGTATTTACT chr6:18415589-18415669 15 1.23e-05 gtgtcccgtg atggcggc tctctgcttc chr13:112161363-11216144 55 1.23e-05 cgctcccaag atggcggc aagccttttg chr11:73348235-73348315 1 2.58e-05 . atggctgc tccaattcca chr7:67127938-67128018 73 2.58e-05 CATGCTCAAG ATGGCTGC chr18:73424390-73424470 2 2.58e-05 A ATGGCTGC TGCATGGCCG chr17:53455427-53455507 73 2.58e-05 ggttattagg atggctgc chr19:13181430-13181510 38 2.58e-05 CAGCCGTAAG ATGGCTGC CAAGGTCTAA chr1:203591764-203591844 29 2.58e-05 CATGGGGAAA ATGGCTGC TGTTCTAGCC chr3:113874333-113874413 41 2.58e-05 TGTTTTAGGC ATGGctgc tggccgcaaa chr1:61707187-61707267 50 2.58e-05 AAGCTGTAAG ATGGCTGC CAAGGTCTGA chr21:20132125-20132205 41 3.90e-05 cgcttctaag atggtggc aagcctcagg chr6:89130724-89130804 50 3.90e-05 cacttccaag atggtggc aagccccgtg chr9:78861747-78861827 44 3.90e-05 agctcctaag atggtggc aggccacttc chr19:5623164-5623244 53 6.49e-05 GGTCCCTGGA ATGGCGGA GACTCTGTCA chr18:43678061-43678141 56 6.49e-05 CGCCTGCATC ATGCCGGC CTTCGGTGCT chr18:3676096-3676176 13 6.49e-05 gcagacatag atgccggc agttgtgcca chr12:108871445-10887152 21 6.49e-05 gcagacatag atgccggc cgttgtgcca chr20:61966633-61966713 22 6.49e-05 TCATCACAAG ATGGCGGA TCCCCACCCT chr17:78806937-78807017 1 7.81e-05 . ATGGAGGC TGTGCGGACT chr15:34792519-34792599 51 7.81e-05 gacacttgaa atggaggc tgatatggtt chr1:221887772-221887852 66 9.08e-05 agcagacaag atggcgcc aggcaag chr8:29192768-29192848 70 9.08e-05 TAGATTCAAA ATGGCGCC TGC chr4:26348083-26348163 9 1.34e-04 ctgtacac atggctga caaagagaag chr6:30687169-30687249 24 1.60e-04 CAGAGTTGCA GTGGCGGC CACCTGGTCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGCKGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:61649892-61649972 1.2e-05 58_[+3]_14 chr6:18415589-18415669 1.2e-05 14_[+3]_58 chr13:112161363-11216144 1.2e-05 54_[+3]_18 chr11:73348235-73348315 2.6e-05 [+3]_72 chr7:67127938-67128018 2.6e-05 72_[+3] chr18:73424390-73424470 2.6e-05 1_[+3]_71 chr17:53455427-53455507 2.6e-05 72_[+3] chr19:13181430-13181510 2.6e-05 37_[+3]_35 chr1:203591764-203591844 2.6e-05 28_[+3]_44 chr3:113874333-113874413 2.6e-05 40_[+3]_32 chr1:61707187-61707267 2.6e-05 49_[+3]_23 chr21:20132125-20132205 3.9e-05 40_[+3]_32 chr6:89130724-89130804 3.9e-05 49_[+3]_23 chr9:78861747-78861827 3.9e-05 43_[+3]_29 chr19:5623164-5623244 6.5e-05 52_[+3]_20 chr18:43678061-43678141 6.5e-05 55_[+3]_17 chr18:3676096-3676176 6.5e-05 12_[+3]_60 chr12:108871445-10887152 6.5e-05 20_[+3]_52 chr20:61966633-61966713 6.5e-05 21_[+3]_51 chr17:78806937-78807017 7.8e-05 [+3]_72 chr15:34792519-34792599 7.8e-05 50_[+3]_22 chr1:221887772-221887852 9.1e-05 65_[+3]_7 chr8:29192768-29192848 9.1e-05 69_[+3]_3 chr4:26348083-26348163 0.00013 8_[+3]_64 chr6:30687169-30687249 0.00016 23_[+3]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGCKGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATGGCKGC width=8 seqs=25 chr1:61649892-61649972 ( 59) ATGGCGGC 1 chr6:18415589-18415669 ( 15) ATGGCGGC 1 chr13:112161363-11216144 ( 55) ATGGCGGC 1 chr11:73348235-73348315 ( 1) ATGGCTGC 1 chr7:67127938-67128018 ( 73) ATGGCTGC 1 chr18:73424390-73424470 ( 2) ATGGCTGC 1 chr17:53455427-53455507 ( 73) ATGGCTGC 1 chr19:13181430-13181510 ( 38) ATGGCTGC 1 chr1:203591764-203591844 ( 29) ATGGCTGC 1 chr3:113874333-113874413 ( 41) ATGGCTGC 1 chr1:61707187-61707267 ( 50) ATGGCTGC 1 chr21:20132125-20132205 ( 41) ATGGTGGC 1 chr6:89130724-89130804 ( 50) ATGGTGGC 1 chr9:78861747-78861827 ( 44) ATGGTGGC 1 chr19:5623164-5623244 ( 53) ATGGCGGA 1 chr18:43678061-43678141 ( 56) ATGCCGGC 1 chr18:3676096-3676176 ( 13) ATGCCGGC 1 chr12:108871445-10887152 ( 21) ATGCCGGC 1 chr20:61966633-61966713 ( 22) ATGGCGGA 1 chr17:78806937-78807017 ( 1) ATGGAGGC 1 chr15:34792519-34792599 ( 51) ATGGAGGC 1 chr1:221887772-221887852 ( 66) ATGGCGCC 1 chr8:29192768-29192848 ( 70) ATGGCGCC 1 chr4:26348083-26348163 ( 9) ATGGCTGA 1 chr6:30687169-30687249 ( 24) GTGGCGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGCKGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.6437 E= 7.8e+000 187 -1129 -255 -1129 -1129 -1129 -1129 194 -1129 -1129 209 -1129 -1129 -102 190 -1129 -171 172 -1129 -111 -1129 -1129 144 47 -1129 -160 197 -1129 -113 186 -1129 -1129 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGCKGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 7.8e+000 0.960000 0.000000 0.040000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.120000 0.880000 0.000000 0.080000 0.800000 0.000000 0.120000 0.000000 0.000000 0.640000 0.360000 0.000000 0.080000 0.920000 0.000000 0.120000 0.880000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGCKGC MEME-3 regular expression -------------------------------------------------------------------------------- ATGGC[GT]GC -------------------------------------------------------------------------------- Time 12.24 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGCWGCY MEME-4 width = 8 sites = 22 llr = 194 E-value = 4.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGCWGCY MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::6::: pos.-specific C a:3a:2a5 probability G ::7::8:: matrix T :a::4::5 bits 2.1 * * * 1.9 ** * * 1.7 ** * * 1.5 ** * ** Relative 1.3 **** ** Entropy 1.0 ******** (12.7 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTGCAGCC consensus C T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCWGCY MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:60749211-60749291 12 1.31e-05 TTGTAGGCTC CTGCAGCC CGAACGCCTT chrX:152127476-152127556 11 1.31e-05 CCGCCATTTC CTGCAGCC GCAGACTCTG chr18:43678061-43678141 29 1.31e-05 CACCACCACC CTGCAGCC CCACCCGGCC chr6:36308888-36308968 6 2.72e-05 CTGCG CTGCAGCT CCGGCTGCCT chr19:19600066-19600146 2 2.72e-05 C CTGCAGCT CCACAGCCCT chr2:224589088-224589168 9 2.72e-05 gtctatgt ctgcagct tgattttaca chr14:35856220-35856300 50 2.72e-05 atctatgtcc ctgcagct agattttata chr7:39762002-39762082 61 2.72e-05 ttgtctatgt ctgcagct cagctttacc chr17:7370479-7370559 43 4.02e-05 CCCTGCTGGC CTGCTGCC TTGGGTCTAC chr1:165571084-165571164 30 4.02e-05 GGCTCTGTCT CTGCTGCC CTGCCCTCTT chr22:46480882-46480962 13 4.02e-05 GCCAGACGCG CTGCTGCC TCCTTATGTG chr1:111470302-111470382 3 5.41e-05 gg ctgctgct tcacttttac chr17:78806937-78807017 37 6.77e-05 GACGGTTTTC CTCCAGCC CACCTCCTGG chr11:47286773-47286853 37 6.77e-05 cgccactgca ctccagcc tgggtgacag chr1:110089142-110089222 54 6.77e-05 TGACTTTGCC CTCCAGCC CTTCCTTCAC chr16:8159788-8159868 19 8.22e-05 ttgtctatgt ctccagct caactttaca chr9:131495704-131495784 18 1.09e-04 TTTCCTTGGT CTCCTGCC GTGCGGTCGC chr8:37693110-37693190 48 1.09e-04 TGCCCCCAGA CTGCACCC TGCAACTGCT chr1:162597515-162597595 43 1.38e-04 TGAATCTCCC CTCCTGCT AATTGTACTC chr19:51244468-51244548 11 1.38e-04 CTCCCTACCC CTGCACCT TCAGCAATTC chr6:86352514-86352594 67 1.52e-04 CGCGTGCTCG CTGCTCCC TGTGTC chr16:15671130-15671210 3 1.66e-04 gg ctgctcct tgttagaaaa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCWGCY MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:60749211-60749291 1.3e-05 11_[+4]_61 chrX:152127476-152127556 1.3e-05 10_[+4]_62 chr18:43678061-43678141 1.3e-05 28_[+4]_44 chr6:36308888-36308968 2.7e-05 5_[+4]_67 chr19:19600066-19600146 2.7e-05 1_[+4]_71 chr2:224589088-224589168 2.7e-05 8_[+4]_64 chr14:35856220-35856300 2.7e-05 49_[+4]_23 chr7:39762002-39762082 2.7e-05 60_[+4]_12 chr17:7370479-7370559 4e-05 42_[+4]_30 chr1:165571084-165571164 4e-05 29_[+4]_43 chr22:46480882-46480962 4e-05 12_[+4]_60 chr1:111470302-111470382 5.4e-05 2_[+4]_70 chr17:78806937-78807017 6.8e-05 36_[+4]_36 chr11:47286773-47286853 6.8e-05 36_[+4]_36 chr1:110089142-110089222 6.8e-05 53_[+4]_19 chr16:8159788-8159868 8.2e-05 18_[+4]_54 chr9:131495704-131495784 0.00011 17_[+4]_55 chr8:37693110-37693190 0.00011 47_[+4]_25 chr1:162597515-162597595 0.00014 42_[+4]_30 chr19:51244468-51244548 0.00014 10_[+4]_62 chr6:86352514-86352594 0.00015 66_[+4]_6 chr16:15671130-15671210 0.00017 2_[+4]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCWGCY MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGCWGCY width=8 seqs=22 chr11:60749211-60749291 ( 12) CTGCAGCC 1 chrX:152127476-152127556 ( 11) CTGCAGCC 1 chr18:43678061-43678141 ( 29) CTGCAGCC 1 chr6:36308888-36308968 ( 6) CTGCAGCT 1 chr19:19600066-19600146 ( 2) CTGCAGCT 1 chr2:224589088-224589168 ( 9) CTGCAGCT 1 chr14:35856220-35856300 ( 50) CTGCAGCT 1 chr7:39762002-39762082 ( 61) CTGCAGCT 1 chr17:7370479-7370559 ( 43) CTGCTGCC 1 chr1:165571084-165571164 ( 30) CTGCTGCC 1 chr22:46480882-46480962 ( 13) CTGCTGCC 1 chr1:111470302-111470382 ( 3) CTGCTGCT 1 chr17:78806937-78807017 ( 37) CTCCAGCC 1 chr11:47286773-47286853 ( 37) CTCCAGCC 1 chr1:110089142-110089222 ( 54) CTCCAGCC 1 chr16:8159788-8159868 ( 19) CTCCAGCT 1 chr9:131495704-131495784 ( 18) CTCCTGCC 1 chr8:37693110-37693190 ( 48) CTGCACCC 1 chr1:162597515-162597595 ( 43) CTCCTGCT 1 chr19:51244468-51244548 ( 11) CTGCACCT 1 chr6:86352514-86352594 ( 67) CTGCTCCC 1 chr16:15671130-15671210 ( 3) CTGCTCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCWGCY MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.24634 E= 4.9e+003 -1110 204 -1110 -1110 -1110 -1110 -1110 194 -1110 17 163 -1110 -1110 204 -1110 -1110 128 -1110 -1110 49 -1110 -42 180 -1110 -1110 204 -1110 -1110 -1110 117 -1110 81 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCWGCY MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 4.9e+003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.272727 0.727273 0.000000 0.000000 1.000000 0.000000 0.000000 0.636364 0.000000 0.000000 0.363636 0.000000 0.181818 0.818182 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.545455 0.000000 0.454545 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCWGCY MEME-4 regular expression -------------------------------------------------------------------------------- CT[GC]C[AT]GC[CT] -------------------------------------------------------------------------------- Time 15.68 secs. ******************************************************************************** ******************************************************************************** MOTIF GGMWGWGG MEME-5 width = 8 sites = 15 llr = 140 E-value = 1.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGMWGWGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::36:7:: pos.-specific C ::7::::: probability G aa::a:aa matrix T :::4:3:: bits 2.1 ** * ** 1.9 ** * ** 1.7 ** * ** 1.5 ** * ** Relative 1.3 ** * ** Entropy 1.0 ******** (13.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGCAGAGG consensus AT T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGMWGWGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:53440156-53440236 42 1.20e-05 gagcctggga ggcagagg ttgcagtgag chr12:56586947-56587027 61 1.20e-05 AGGGAAATAT GGCAGAGG TAGTTTGCTA chr20:52532035-52532115 6 1.20e-05 TGCCT GGCAGAGG TGTGAGATGC chr6:86352514-86352594 11 2.38e-05 CTCCCCGTTG GGCTGAGG CGGAGAAATC chr4:48199594-48199674 50 2.38e-05 ggggagctga ggctgagg gaaagctgta chr19:13181430-13181510 16 2.38e-05 GTGGGCCTCC GGCTGAGG CCGCCAGCCG chr1:202208063-202208143 30 2.38e-05 ggtgccggcg ggctgagg cgtaaaatgg chr2:198299501-198299581 33 3.57e-05 CATTACGCGG GGCAGTGG CCTGCGCCGC chr17:36453280-36453360 56 4.86e-05 CCTAGGCCGG GGAAGAGG CTTAGGTGGA chr6:27140829-27140909 17 4.86e-05 GGGGAGGAGG GGAAGAGG CCTTTTATCG chrX:106140693-106140773 5 4.86e-05 ATGG GGAAGAGG ACTGGAAGCC chr1:6871845-6871925 35 6.03e-05 tccaTTCCGG GGCTGTGG CTGCCATTTT chr10:51574395-51574475 19 6.03e-05 taccccttct ggctgtgg cccttcagat chr13:69796436-69796516 60 8.59e-05 ccaccatctt ggaagtgg ctcaccaccg chr2:592890-592970 28 8.59e-05 ccaccatctt ggaagtgg gccgccgcca -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGMWGWGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:53440156-53440236 1.2e-05 41_[+5]_31 chr12:56586947-56587027 1.2e-05 60_[+5]_12 chr20:52532035-52532115 1.2e-05 5_[+5]_67 chr6:86352514-86352594 2.4e-05 10_[+5]_62 chr4:48199594-48199674 2.4e-05 49_[+5]_23 chr19:13181430-13181510 2.4e-05 15_[+5]_57 chr1:202208063-202208143 2.4e-05 29_[+5]_43 chr2:198299501-198299581 3.6e-05 32_[+5]_40 chr17:36453280-36453360 4.9e-05 55_[+5]_17 chr6:27140829-27140909 4.9e-05 16_[+5]_56 chrX:106140693-106140773 4.9e-05 4_[+5]_68 chr1:6871845-6871925 6e-05 34_[+5]_38 chr10:51574395-51574475 6e-05 18_[+5]_54 chr13:69796436-69796516 8.6e-05 59_[+5]_13 chr2:592890-592970 8.6e-05 27_[+5]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGMWGWGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGMWGWGG width=8 seqs=15 chr12:53440156-53440236 ( 42) GGCAGAGG 1 chr12:56586947-56587027 ( 61) GGCAGAGG 1 chr20:52532035-52532115 ( 6) GGCAGAGG 1 chr6:86352514-86352594 ( 11) GGCTGAGG 1 chr4:48199594-48199674 ( 50) GGCTGAGG 1 chr19:13181430-13181510 ( 16) GGCTGAGG 1 chr1:202208063-202208143 ( 30) GGCTGAGG 1 chr2:198299501-198299581 ( 33) GGCAGTGG 1 chr17:36453280-36453360 ( 56) GGAAGAGG 1 chr6:27140829-27140909 ( 17) GGAAGAGG 1 chrX:106140693-106140773 ( 5) GGAAGAGG 1 chr1:6871845-6871925 ( 35) GGCTGTGG 1 chr10:51574395-51574475 ( 19) GGCTGTGG 1 chr13:69796436-69796516 ( 60) GGAAGTGG 1 chr2:592890-592970 ( 28) GGAAGTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGMWGWGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.5229 E= 1.2e+004 -1055 -1055 209 -1055 -1055 -1055 209 -1055 35 146 -1055 -1055 119 -1055 -1055 62 -1055 -1055 209 -1055 135 -1055 -1055 36 -1055 -1055 209 -1055 -1055 -1055 209 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGMWGWGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 1.2e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.333333 0.666667 0.000000 0.000000 0.600000 0.000000 0.000000 0.400000 0.000000 0.000000 1.000000 0.000000 0.666667 0.000000 0.000000 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGMWGWGG MEME-5 regular expression -------------------------------------------------------------------------------- GG[CA][AT]G[AT]GG -------------------------------------------------------------------------------- Time 19.03 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:9230688-9230768 8.60e-01 80 chrX:107408706-107408786 2.74e-01 80 chr13:22150712-22150792 3.63e-03 80 chr9:78861747-78861827 3.27e-05 43_[+3(3.90e-05)]_14_[+3(1.23e-05)]_\ 7 chr3:143216399-143216479 5.91e-05 18_[+2(1.66e-05)]_54 chr5:81407180-81407260 4.17e-02 80 chr1:27744838-27744918 1.37e-01 80 chr18:12928275-12928355 5.35e-05 36_[+2(6.77e-05)]_8_[+1(4.99e-05)]_\ 9_[+2(1.66e-05)]_3 chr20:49023003-49023083 1.98e-02 80 chr22:46480882-46480962 4.11e-03 12_[+4(4.02e-05)]_60 chr2:592890-592970 3.03e-04 27_[+5(8.59e-05)]_6_[+2(1.66e-05)]_\ 31 chr13:112161363-11216144 1.28e-04 32_[+3(1.23e-05)]_14_[+3(1.23e-05)]_\ 18 chr4:26348083-26348163 2.73e-04 80 chr20:61966633-61966713 3.66e-03 17_[+1(6.47e-05)]_20_[+1(6.47e-05)]_\ 27 chr6:26515236-26515316 4.74e-04 26_[+2(5.05e-05)]_29_[+1(3.40e-05)]_\ 9 chr17:37768108-37768188 7.56e-06 44_[+3(2.58e-05)]_15_[+2(1.66e-05)]_\ 5 chr16:56798968-56799048 8.49e-05 18_[+2(6.77e-05)]_38_[+1(1.64e-05)]_\ 8 chr1:61707187-61707267 1.34e-03 26_[+1(1.64e-05)]_15_[+3(2.58e-05)]_\ 23 chr5:140723565-140723645 7.16e-04 62_[+5(1.20e-05)]_10 chr8:29192768-29192848 1.42e-03 34_[+1(1.64e-05)]_23_[+1(1.64e-05)]_\ 7 chr1:99646101-99646181 1.82e-01 13_[+1(3.40e-05)]_59 chr6:29526691-29526771 4.57e-03 12_[+2(1.66e-05)]_60 chr15:37110640-37110720 1.44e-04 38_[+2(3.21e-05)]_10_[+4(6.77e-05)]_\ 16 chr6:116601945-116602025 8.86e-03 41_[+1(3.40e-05)]_5_[+1(9.52e-05)]_\ 18 chrX:102470828-102470908 6.69e-03 40_[+1(4.99e-05)]_32 chr4:79379046-79379126 6.03e-03 28_[+5(8.59e-05)]_44 chr2:70298207-70298287 1.04e-01 80 chr20:57449700-57449780 9.28e-02 16_[+2(6.77e-05)]_56 chr18:9930471-9930551 2.90e-02 80 chr16:17034396-17034476 3.40e-01 80 chr7:27200674-27200754 1.81e-04 46_[+3(1.23e-05)]_26 chrX:120490807-120490887 3.21e-01 80 chr1:210093206-210093286 4.65e-01 80 chr2:136744213-136744293 7.66e-05 17_[+2(3.21e-05)]_46_[+1(3.40e-05)]_\ 1 chrX:130946884-130946964 1.58e-03 21_[+2(1.66e-05)]_26_[+1(4.99e-05)]_\ 17 chr5:64921721-64921801 1.69e-01 35_[+2(5.05e-05)]_37 chr2:33755111-33755191 3.16e-02 12_[+2(6.77e-05)]_20_[+2(1.66e-05)]_\ 32 chr1:202208063-202208143 1.09e-04 29_[+5(2.38e-05)]_2_[+1(3.40e-05)]_\ 10_[+1(1.64e-05)]_15 chr7:72015681-72015761 2.98e-03 10_[+2(3.21e-05)]_26_[+2(3.21e-05)]_\ 28 chr8:110477739-110477819 2.27e-02 56_[+2(5.05e-05)]_16 chr7:39762002-39762082 2.01e-02 60_[+4(2.72e-05)]_12 chr1:202821493-202821573 2.21e-03 71_[+3(2.58e-05)]_1 chr22:17163118-17163198 4.13e-03 32_[+1(1.64e-05)]_40 chr6:27746731-27746811 6.63e-02 62_[+1(3.40e-05)]_10 chr11:4093988-4094068 1.29e-01 80 chr12:120110269-12011034 5.54e-01 80 chr5:140937463-140937543 1.39e-03 47_[+1(1.64e-05)]_25 chr12:108871445-10887152 5.87e-05 20_[+3(6.49e-05)]_22_[+3(3.90e-05)]_\ 22 chr5:41843707-41843787 2.77e-03 45_[+1(1.64e-05)]_27 chr3:113874333-113874413 1.62e-04 40_[+3(2.58e-05)]_6_[+1(1.64e-05)]_\ 18 chr8:37693110-37693190 9.56e-03 72_[+1(9.52e-05)] chr20:52532035-52532115 1.21e-02 5_[+5(1.20e-05)]_67 chr3:142003993-142004073 1.83e-02 72_[+1(1.64e-05)] chr20:46203965-46204045 7.35e-03 23_[+2(5.05e-05)]_13_[+2(1.66e-05)]_\ 28 chr1:165571084-165571164 2.97e-03 4_[+2(5.05e-05)]_17_[+4(4.02e-05)]_\ 43 chr9:33682689-33682769 3.42e-02 63_[+1(1.64e-05)]_9 chr14:35856220-35856300 4.71e-04 6_[+2(3.21e-05)]_35_[+4(2.72e-05)]_\ 23 chr22:24861578-24861658 3.58e-01 80 chr10:21309566-21309646 1.70e-01 80 chr17:75522994-75523074 1.43e-02 42_[+2(1.66e-05)]_30 chr22:21301123-21301203 5.21e-06 10_[+3(2.58e-05)]_10_[+2(1.66e-05)]_\ 44 chr1:156382457-156382537 3.51e-05 41_[+2(3.21e-05)]_20_[+3(1.23e-05)]_\ 3 chr21:15756295-15756375 1.03e-02 42_[+2(1.66e-05)]_30 chr7:37952546-37952626 1.49e-01 80 chr5:148929191-148929271 9.60e-02 24_[+2(8.32e-05)]_48 chr3:141131206-141131286 2.11e-02 80 chr6:89130724-89130804 3.02e-05 1_[+1(6.47e-05)]_18_[+3(1.23e-05)]_\ 14_[+3(3.90e-05)]_23 chr17:37695387-37695467 3.23e-01 80 chr17:59541105-59541185 9.67e-02 80 chr16:9186524-9186604 5.46e-01 80 chr12:14538178-14538258 1.80e-04 24_[+2(3.21e-05)]_38_[+1(1.64e-05)]_\ 2 chr6:149364852-149364932 5.79e-02 80 chr18:23501767-23501847 9.45e-03 27_[+1(6.47e-05)]_45 chr22:21009995-21010075 7.17e-01 80 chr17:41608311-41608391 2.45e-01 80 chr9:131495704-131495784 6.06e-03 3_[+2(8.32e-05)]_22_[+2(3.21e-05)]_\ 39 chr7:20600532-20600612 5.14e-01 80 chrX:106140693-106140773 1.95e-04 4_[+5(4.86e-05)]_7_[+2(8.32e-05)]_\ 53 chr17:62596244-62596324 5.00e-01 80 chr18:3676096-3676176 3.39e-06 12_[+3(6.49e-05)]_18_[+1(1.64e-05)]_\ 34 chr1:225960011-225960091 2.31e-01 80 chr16:27210074-27210154 8.95e-02 80 chr17:7370479-7370559 3.26e-04 20_[+1(1.64e-05)]_14_[+4(4.02e-05)]_\ 30 chr11:124061056-12406113 1.47e-01 80 chr11:12728971-12729051 2.17e-01 80 chr10:51574395-51574475 1.31e-02 18_[+5(6.03e-05)]_54 chr12:95625200-95625280 8.26e-01 80 chr1:203591764-203591844 1.72e-04 28_[+3(2.58e-05)]_14_[+1(1.64e-05)]_\ 22 chr9:71259028-71259108 2.43e-02 11_[+2(1.66e-05)]_61 chr9:14525230-14525310 1.37e-01 80 chr10:62539895-62539975 3.01e-01 80 chr21:20132125-20132205 3.77e-04 18_[+3(3.90e-05)]_14_[+3(3.90e-05)]_\ 32 chr12:42491842-42491922 1.67e-02 35_[+1(3.40e-05)]_37 chr2:232316892-232316972 6.89e-04 39_[+1(3.40e-05)]_33 chr2:170428433-170428513 6.28e-01 80 chr1:111470302-111470382 5.88e-02 2_[+4(5.41e-05)]_70 chr12:56586947-56587027 5.66e-05 26_[+1(1.64e-05)]_26_[+5(1.20e-05)]_\ 12 chr19:13181430-13181510 6.51e-06 15_[+5(2.38e-05)]_14_[+3(2.58e-05)]_\ 11_[+3(2.58e-05)]_16 chr19:51244468-51244548 2.70e-02 80 chr11:33182045-33182125 5.62e-01 80 chr17:53455427-53455507 1.30e-03 44_[+1(3.40e-05)]_20_[+3(2.58e-05)] chr5:179125125-179125205 1.90e-03 53_[+1(3.40e-05)]_19 chr16:69761717-69761797 3.65e-01 80 chr1:112005581-112005661 8.34e-01 80 chr18:43678061-43678141 3.07e-03 28_[+4(1.31e-05)]_19_[+3(6.49e-05)]_\ 17 chr20:45980479-45980559 2.21e-02 22_[+1(3.40e-05)]_35_[+1(3.40e-05)]_\ 7 chr18:73424390-73424470 7.26e-05 1_[+3(2.58e-05)]_25_[+3(2.58e-05)]_\ 23_[+1(1.64e-05)]_7 chr12:51008053-51008133 8.79e-02 6_[+2(5.05e-05)]_66 chr2:38380763-38380843 1.29e-02 80 chr7:67127938-67128018 9.12e-04 21_[+3(2.58e-05)]_17_[+3(2.58e-05)]_\ 18_[+3(2.58e-05)] chr5:94960218-94960298 6.64e-07 10_[+2(3.21e-05)]_42_[+1(1.64e-05)]_\ 12 chr3:197482707-197482787 1.35e-03 6_[+1(4.99e-05)]_29_[+1(4.99e-05)]_\ 29 chr6:30843118-30843198 9.04e-06 60_[+3(1.23e-05)]_12 chrX:73071488-73071568 9.62e-01 80 chr6:10314985-10315065 3.93e-02 39_[+2(1.66e-05)]_33 chr2:170695760-170695840 6.34e-01 80 chr12:49457709-49457789 1.96e-01 80 chr2:232527192-232527272 2.78e-02 4_[+2(8.32e-05)]_68 chr6:27140829-27140909 2.36e-02 16_[+5(4.86e-05)]_56 chr17:43239416-43239496 6.30e-01 80 chr19:55073445-55073525 7.02e-06 14_[+1(1.64e-05)]_58 chr1:223886140-223886220 7.76e-01 80 chr2:174828195-174828275 4.22e-02 23_[+2(5.05e-05)]_49 chr3:37181152-37181232 1.32e-01 11_[+2(5.05e-05)]_61 chr15:34792519-34792599 2.14e-03 50_[+3(7.81e-05)]_22 chrX:152127476-152127556 8.80e-06 2_[+2(8.32e-05)]_[+4(1.31e-05)]_47_\ [+1(4.99e-05)]_7 chr6:26402068-26402148 3.38e-01 80 chr2:224589088-224589168 3.19e-03 8_[+4(2.72e-05)]_64 chr2:201728920-201729000 6.01e-05 24_[+2(3.21e-05)]_26_[+3(9.08e-05)]_\ 14 chr1:162597515-162597595 3.89e-01 80 chr17:74100066-74100146 5.61e-01 80 chr4:6711413-6711493 1.44e-01 80 chr3:44965318-44965398 1.79e-02 9_[+1(1.64e-05)]_63 chr16:4294403-4294483 2.10e-05 72_[+3(1.23e-05)] chr14:78488622-78488702 6.14e-01 80 chrX:130962873-130962953 1.05e-01 80 chrX:123095182-123095262 2.62e-03 13_[+1(6.47e-05)]_59 chr2:162160341-162160421 1.74e-02 80 chr17:25432864-25432944 7.29e-04 41_[+2(1.66e-05)]_21_[+1(3.40e-05)]_\ 2 chr15:45002641-45002721 4.40e-02 80 chr9:130308911-130308991 1.34e-03 31_[+1(1.64e-05)]_41 chr19:49851339-49851419 2.89e-04 41_[+1(4.99e-05)]_8_[+1(1.64e-05)]_\ 15 chr1:224393652-224393732 3.56e-01 80 chr13:69796436-69796516 5.81e-04 59_[+5(8.59e-05)]_13 chr6:30687169-30687249 1.11e-02 80 chr7:8336015-8336095 8.70e-01 80 chrX:54071104-54071184 5.43e-02 3_[+2(5.05e-05)]_69 chr15:56092165-56092245 6.87e-03 15_[+2(1.66e-05)]_57 chr15:45841057-45841137 5.59e-05 18_[+2(6.77e-05)]_37_[+1(6.47e-05)]_\ 9 chr19:21265250-21265330 9.90e-05 64_[+3(1.23e-05)]_8 chr2:15996564-15996644 1.31e-04 30_[+2(1.66e-05)]_15_[+1(1.64e-05)]_\ 19 chr12:72149482-72149562 1.13e-01 34_[+2(5.05e-05)]_38 chr1:211779766-211779846 7.23e-01 80 chr1:221899531-221899611 1.21e-03 27_[+1(1.64e-05)]_45 chr22:50050561-50050641 4.91e-03 11_[+1(6.47e-05)]_35_[+1(6.47e-05)]_\ 18 chr6:97365162-97365242 2.74e-03 50_[+1(1.64e-05)]_22 chr3:191377014-191377094 8.76e-04 13_[+5(8.59e-05)]_6_[+2(1.66e-05)]_\ [+5(8.59e-05)]_37 chr5:81648129-81648209 6.49e-01 80 chr9:37200054-37200134 8.57e-01 80 chr4:123524196-123524276 5.02e-02 19_[+2(1.66e-05)]_15_[+2(5.05e-05)]_\ 30 chr5:58233364-58233444 6.55e-04 29_[+1(1.64e-05)]_43 chr19:47132401-47132481 1.66e-01 80 chr1:110089142-110089222 4.79e-03 11_[+2(1.66e-05)]_34_[+4(6.77e-05)]_\ 19 chr20:558120-558200 2.15e-03 56_[+1(1.64e-05)]_16 chr15:38839856-38839936 1.37e-02 28_[+2(5.05e-05)]_44 chr11:60749211-60749291 7.57e-07 11_[+4(1.31e-05)]_20_[+3(1.23e-05)]_\ 33 chr14:73289850-73289930 3.09e-05 24_[+1(1.64e-05)]_48 chr7:139045610-139045690 7.80e-02 80 chr19:46243495-46243575 4.94e-02 8_[+2(5.05e-05)]_64 chr1:206607622-206607702 1.42e-02 38_[+2(1.66e-05)]_34 chr5:74808101-74808181 9.64e-01 80 chr1:17052631-17052711 8.06e-01 80 chr1:114325453-114325533 3.52e-02 80 chr6:18415589-18415669 5.28e-04 14_[+3(1.23e-05)]_10_[+1(6.47e-05)]_\ 40 chr12:53440156-53440236 6.33e-05 9_[+5(2.38e-05)]_24_[+5(1.20e-05)]_\ 15_[+3(9.08e-05)]_8 chrX:1566380-1566460 8.93e-02 71_[+2(3.21e-05)]_1 chr2:113017161-113017241 2.15e-02 80 chr7:113061869-113061949 4.23e-04 36_[+1(3.40e-05)]_36 chr16:15671130-15671210 3.06e-02 80 chr14:37440542-37440622 8.89e-03 38_[+2(6.77e-05)]_34 chr1:70017574-70017654 2.05e-03 26_[+2(1.66e-05)]_46 chr3:60263173-60263253 1.83e-04 25_[+1(1.64e-05)]_4_[+2(6.77e-05)]_\ 35 chr2:198299501-198299581 4.88e-02 32_[+5(3.57e-05)]_40 chr6:28749779-28749859 3.69e-05 23_[+3(2.58e-05)]_49 chr10:73444431-73444511 1.20e-01 80 chr16:75682711-75682791 8.86e-01 80 chr7:26239667-26239747 4.41e-01 80 chr11:47286773-47286853 3.18e-03 36_[+4(6.77e-05)]_36 chr11:10879344-10879424 5.17e-03 15_[+2(8.32e-05)]_57 chr1:21501700-21501780 9.15e-01 80 chr14:22712022-22712102 3.02e-01 80 chrX:152110190-152110270 6.79e-02 80 chr11:73348235-73348315 1.72e-04 [+3(2.58e-05)]_12_[+1(1.64e-05)]_52 chr3:185655188-185655268 2.78e-07 22_[+2(1.66e-05)]_36_[+3(2.58e-05)]_\ 6 chr9:37300942-37301022 6.56e-01 80 chr12:70970814-70970894 3.19e-01 80 chr17:40718757-40718837 3.23e-01 80 chr1:151547747-151547827 5.49e-02 80 chr5:148930774-148930854 7.14e-02 80 chr10:75780754-75780834 9.06e-02 80 chr15:82162889-82162969 6.92e-01 80 chr19:19600066-19600146 8.22e-04 1_[+4(2.72e-05)]_27_[+2(5.05e-05)]_\ 36 chr10:75539920-75540000 1.48e-01 80 chr22:19464814-19464894 6.20e-01 80 chr8:66782546-66782626 7.89e-04 38_[+2(1.66e-05)]_34 chr1:40870412-40870492 6.76e-02 34_[+1(3.40e-05)]_38 chr7:12781960-12782040 1.69e-01 80 chr1:6871845-6871925 6.78e-05 34_[+5(6.03e-05)]_2_[+2(1.66e-05)]_\ 28 chr6:37391915-37391995 1.66e-01 80 chr10:71076829-71076909 9.93e-01 80 chr5:39106571-39106651 8.46e-03 51_[+1(3.40e-05)]_21 chr19:5623164-5623244 2.13e-02 52_[+3(6.49e-05)]_20 chr15:74392513-74392593 3.54e-01 80 chr19:47853304-47853384 8.17e-01 80 chr17:56492076-56492156 3.90e-02 54_[+2(5.05e-05)]_18 chr19:23941423-23941503 1.06e-01 80 chr6:28759020-28759100 2.82e-03 80 chr1:145507363-145507443 4.04e-01 80 chr1:207258613-207258693 8.52e-01 80 chr17:25672731-25672811 4.03e-04 80 chr7:138803493-138803573 2.37e-01 80 chr7:116655237-116655317 2.48e-01 80 chr3:9886041-9886121 5.27e-01 80 chr2:47581710-47581790 5.59e-01 80 chr17:74230532-74230612 6.76e-04 80 chr1:61649892-61649972 2.06e-04 15_[+2(1.66e-05)]_35_[+3(1.23e-05)]_\ 14 chr20:30134892-30134972 3.49e-02 27_[+1(4.99e-05)]_45 chr1:30703148-30703228 5.34e-01 80 chr4:154354679-154354759 1.28e-01 80 chr17:78806937-78807017 1.01e-04 [+3(7.81e-05)]_28_[+4(6.77e-05)]_36 chr10:32635509-32635589 1.56e-01 80 chr1:221887772-221887852 5.79e-06 8_[+3(1.23e-05)]_[+2(6.77e-05)]_37_\ [+1(6.47e-05)]_11 chr1:116820923-116821003 1.00e-02 80 chr4:48199594-48199674 2.01e-02 49_[+5(2.38e-05)]_23 chr1:16176485-16176565 1.45e-02 80 chr22:22417185-22417265 2.07e-01 80 chr11:63708615-63708695 6.42e-02 80 chr15:93461205-93461285 5.05e-02 40_[+2(1.66e-05)]_32 chr14:23298932-23299012 3.45e-04 64_[+1(6.47e-05)]_8 chrX:134975332-134975412 4.21e-02 80 chr7:86689349-86689429 2.72e-02 80 chr6:86352514-86352594 7.58e-03 10_[+5(2.38e-05)]_62 chr17:36453280-36453360 9.33e-02 55_[+5(4.86e-05)]_17 chr19:51263410-51263490 2.45e-01 80 chr6:36308888-36308968 3.52e-04 5_[+4(2.72e-05)]_55_[+1(1.64e-05)]_\ 4 chr3:48754027-48754107 2.65e-04 67_[+1(1.64e-05)]_5 chr13:20438587-20438667 5.19e-01 80 chr16:8159788-8159868 6.18e-03 18_[+4(8.22e-05)]_54 chr12:54867614-54867694 2.49e-04 40_[+2(3.21e-05)]_32 chr3:101185771-101185851 1.20e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n08.farnam.hpc.yale.internal ********************************************************************************