******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/JUNB.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr16:87329051-87329131 1.0000 80 chr16:10970915-10970995 1.0000 80 chr6:4380323-4380403 1.0000 80 chr17:53802923-53803003 1.0000 80 chr7:106731067-106731147 1.0000 80 chr4:79502999-79503079 1.0000 80 chr11:8625659-8625739 1.0000 80 chrX:2387450-2387530 1.0000 80 chr19:38527900-38527980 1.0000 80 chr12:10562213-10562293 1.0000 80 chr17:39662460-39662540 1.0000 80 chr1:26333396-26333476 1.0000 80 chr6:27727744-27727824 1.0000 80 chr19:38646286-38646366 1.0000 80 chrX:2397287-2397367 1.0000 80 chr15:63654668-63654748 1.0000 80 chr17:45335111-45335191 1.0000 80 chrX:9281415-9281495 1.0000 80 chr7:150974269-150974349 1.0000 80 chr10:104953117-10495319 1.0000 80 chr1:200375589-200375669 1.0000 80 chr7:26155397-26155477 1.0000 80 chr20:47463118-47463198 1.0000 80 chr10:120851694-12085177 1.0000 80 chr1:9749381-9749461 1.0000 80 chr12:8085959-8086039 1.0000 80 chr10:71616669-71616749 1.0000 80 chr21:33788404-33788484 1.0000 80 chr8:23332933-23333013 1.0000 80 chr17:21792990-21793070 1.0000 80 chr18:32925797-32925877 1.0000 80 chr20:43324511-43324591 1.0000 80 chr2:134877365-134877445 1.0000 80 chr1:7177768-7177848 1.0000 80 chr3:67068677-67068757 1.0000 80 chr21:35123601-35123681 1.0000 80 chr21:36089815-36089895 1.0000 80 chr11:4167365-4167445 1.0000 80 chr17:30228080-30228160 1.0000 80 chr10:1015818-1015898 1.0000 80 chr21:33786192-33786272 1.0000 80 chr16:47618858-47618938 1.0000 80 chr16:86825046-86825126 1.0000 80 chr4:122077259-122077339 1.0000 80 chr1:236517849-236517929 1.0000 80 chr14:105506028-10550610 1.0000 80 chr2:64253000-64253080 1.0000 80 chr2:201676017-201676097 1.0000 80 chr16:85063158-85063238 1.0000 80 chr5:141532115-141532195 1.0000 80 chr11:69453774-69453854 1.0000 80 chr5:88692495-88692575 1.0000 80 chr19:5716440-5716520 1.0000 80 chr1:153950450-153950530 1.0000 80 chr22:30821661-30821741 1.0000 80 chr2:217747937-217748017 1.0000 80 chr11:47627605-47627685 1.0000 80 chr20:48330570-48330650 1.0000 80 chr16:58060147-58060227 1.0000 80 chr19:8767057-8767137 1.0000 80 chr5:159243498-159243578 1.0000 80 chr17:55362461-55362541 1.0000 80 chr1:27898752-27898832 1.0000 80 chr20:47444644-47444724 1.0000 80 chr9:34379679-34379759 1.0000 80 chr13:52548708-52548788 1.0000 80 chr11:110045044-11004512 1.0000 80 chr2:33359993-33360073 1.0000 80 chr6:32753796-32753876 1.0000 80 chr4:56586546-56586626 1.0000 80 chr2:45006070-45006150 1.0000 80 chr11:72153160-72153240 1.0000 80 chr6:28370111-28370191 1.0000 80 chr19:6088049-6088129 1.0000 80 chr9:99620301-99620381 1.0000 80 chr17:35736134-35736214 1.0000 80 chr17:47100152-47100232 1.0000 80 chr6:90528743-90528823 1.0000 80 chr2:61034511-61034591 1.0000 80 chr19:18439654-18439734 1.0000 80 chr18:19748439-19748519 1.0000 80 chr8:134581231-134581311 1.0000 80 chr2:75904581-75904661 1.0000 80 chr2:61034280-61034360 1.0000 80 chr17:55417878-55417958 1.0000 80 chr16:11709675-11709755 1.0000 80 chr7:29789728-29789808 1.0000 80 chr12:48746309-48746389 1.0000 80 chrX:2393419-2393499 1.0000 80 chr21:46222655-46222735 1.0000 80 chrX:153606922-153607002 1.0000 80 chr7:27881950-27882030 1.0000 80 chr2:236299147-236299227 1.0000 80 chr1:145575952-145576032 1.0000 80 chr6:111585190-111585270 1.0000 80 chr15:73979242-73979322 1.0000 80 chr11:64794802-64794882 1.0000 80 chr17:76971118-76971198 1.0000 80 chr19:14550923-14551003 1.0000 80 chr17:62062598-62062678 1.0000 80 chrX:2382122-2382202 1.0000 80 chrX:2369927-2370007 1.0000 80 chr19:31389831-31389911 1.0000 80 chrX:2393621-2393701 1.0000 80 chr5:134585488-134585568 1.0000 80 chr1:221861171-221861251 1.0000 80 chrX:2370560-2370640 1.0000 80 chr5:415662-415742 1.0000 80 chr6:17972953-17973033 1.0000 80 chr8:80681011-80681091 1.0000 80 chr17:43176724-43176804 1.0000 80 chr2:85788938-85789018 1.0000 80 chr14:24583640-24583720 1.0000 80 chr11:57171298-57171378 1.0000 80 chr11:76494161-76494241 1.0000 80 chr12:122331173-12233125 1.0000 80 chr17:76164534-76164614 1.0000 80 chr6:158998710-158998790 1.0000 80 chr13:50783097-50783177 1.0000 80 chr5:133448034-133448114 1.0000 80 chr19:56159340-56159420 1.0000 80 chr21:17116066-17116146 1.0000 80 chr16:69466098-69466178 1.0000 80 chr2:10423590-10423670 1.0000 80 chr6:53480600-53480680 1.0000 80 chrX:15598114-15598194 1.0000 80 chr4:139572216-139572296 1.0000 80 chr14:23005989-23006069 1.0000 80 chr7:150130966-150131046 1.0000 80 chr6:44174339-44174419 1.0000 80 chr1:151628070-151628150 1.0000 80 chr8:1845591-1845671 1.0000 80 chr11:62369530-62369610 1.0000 80 chr16:21272528-21272608 1.0000 80 chr2:173118072-173118152 1.0000 80 chrX:2392448-2392528 1.0000 80 chr1:90359981-90360061 1.0000 80 chr1:36840259-36840339 1.0000 80 chr11:123986030-12398611 1.0000 80 chrX:2386902-2386982 1.0000 80 chr19:925588-925668 1.0000 80 chr4:74573748-74573828 1.0000 80 chr3:42888741-42888821 1.0000 80 chr2:100895447-100895527 1.0000 80 chr12:95348112-95348192 1.0000 80 chrX:67804105-67804185 1.0000 80 chr14:55575131-55575211 1.0000 80 chr7:1098685-1098765 1.0000 80 chrX:48350855-48350935 1.0000 80 chr16:3072436-3072516 1.0000 80 chr8:91237211-91237291 1.0000 80 chr15:40559145-40559225 1.0000 80 chr17:75368173-75368253 1.0000 80 chr11:65430490-65430570 1.0000 80 chr1:92182003-92182083 1.0000 80 chr19:29017121-29017201 1.0000 80 chr2:166810249-166810329 1.0000 80 chr2:134877570-134877650 1.0000 80 chr15:43398237-43398317 1.0000 80 chr11:65247111-65247191 1.0000 80 chr6:110858579-110858659 1.0000 80 chr3:127309486-127309566 1.0000 80 chr1:42335958-42336038 1.0000 80 chr1:151689398-151689478 1.0000 80 chr10:75255813-75255893 1.0000 80 chr12:93713266-93713346 1.0000 80 chr16:87120351-87120431 1.0000 80 chr3:154914496-154914576 1.0000 80 chr8:27474714-27474794 1.0000 80 chr2:27544094-27544174 1.0000 80 chr5:102456679-102456759 1.0000 80 chr5:158527484-158527564 1.0000 80 chr17:32269572-32269652 1.0000 80 chr11:120302975-12030305 1.0000 80 chr1:31502506-31502586 1.0000 80 chr16:1052862-1052942 1.0000 80 chr11:47545265-47545345 1.0000 80 chr3:183250809-183250889 1.0000 80 chr1:181863859-181863939 1.0000 80 chr4:82646380-82646460 1.0000 80 chr7:5085253-5085333 1.0000 80 chr11:66185708-66185788 1.0000 80 chr19:41169946-41170026 1.0000 80 chrX:2375448-2375528 1.0000 80 chr4:72978412-72978492 1.0000 80 chr18:3595459-3595539 1.0000 80 chr2:46769495-46769575 1.0000 80 chr21:38318317-38318397 1.0000 80 chr18:19320792-19320872 1.0000 80 chr16:420604-420684 1.0000 80 chr7:6746822-6746902 1.0000 80 chr22:40895302-40895382 1.0000 80 chr7:2570022-2570102 1.0000 80 chr2:217639952-217640032 1.0000 80 chr12:48177405-48177485 1.0000 80 chr9:131069635-131069715 1.0000 80 chr15:50429619-50429699 1.0000 80 chr8:103251199-103251279 1.0000 80 chr4:109517537-109517617 1.0000 80 chr9:119200071-119200151 1.0000 80 chr16:67225916-67225996 1.0000 80 chr7:129712174-129712254 1.0000 80 chr10:134149192-13414927 1.0000 80 chr1:52035586-52035666 1.0000 80 chr1:145110669-145110749 1.0000 80 chr8:8559253-8559333 1.0000 80 chr8:101912798-101912878 1.0000 80 chr16:85645921-85646001 1.0000 80 chr18:34004936-34005016 1.0000 80 chr7:6769204-6769284 1.0000 80 chr10:6281355-6281435 1.0000 80 chr2:37789559-37789639 1.0000 80 chr6:13847128-13847208 1.0000 80 chr19:46012538-46012618 1.0000 80 chr5:134582730-134582810 1.0000 80 chr19:48829365-48829445 1.0000 80 chr10:21625975-21626055 1.0000 80 chr6:90487213-90487293 1.0000 80 chr1:78227858-78227938 1.0000 80 chr2:46727544-46727624 1.0000 80 chrX:2376002-2376082 1.0000 80 chr2:234259534-234259614 1.0000 80 chr6:15246049-15246129 1.0000 80 chr19:45414607-45414687 1.0000 80 chr3:195823425-195823505 1.0000 80 chr2:71970134-71970214 1.0000 80 chr8:11711607-11711687 1.0000 80 chr13:101045126-10104520 1.0000 80 chr11:86454569-86454649 1.0000 80 chr7:99160636-99160716 1.0000 80 chr5:56989067-56989147 1.0000 80 chr10:3848151-3848231 1.0000 80 chr6:14744348-14744428 1.0000 80 chr7:75115694-75115774 1.0000 80 chr5:118399574-118399654 1.0000 80 chr4:169373016-169373096 1.0000 80 chr2:219260976-219261056 1.0000 80 chr16:79692285-79692365 1.0000 80 chr1:154357641-154357721 1.0000 80 chr7:72349742-72349822 1.0000 80 chr19:44288723-44288803 1.0000 80 chr11:18547873-18547953 1.0000 80 chr7:37071706-37071786 1.0000 80 chr8:123695705-123695785 1.0000 80 chr21:47608424-47608504 1.0000 80 chr3:39188641-39188721 1.0000 80 chr14:23340809-23340889 1.0000 80 chr4:48782709-48782789 1.0000 80 chr17:61040856-61040936 1.0000 80 chr7:102004074-102004154 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_JUNB/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/JUNB.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.246 C 0.257 G 0.265 T 0.232 Background letter frequencies (from file dataset with add-one prior applied): A 0.246 C 0.256 G 0.265 T 0.232 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGASTCAY MEME-1 width = 8 sites = 60 llr = 562 E-value = 1.6e-056 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGASTCAY MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::a:::a: pos.-specific C :::4:a:6 probability G :a:6:::1 matrix T a1::a::4 bits 2.1 * * * * 1.9 * * *** 1.7 *** *** 1.5 *** *** Relative 1.3 *** *** Entropy 1.1 ******* (13.5 bits) 0.8 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGAGTCAC consensus C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAY MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:99160636-99160716 53 1.50e-05 TACATTTCAG TGAGTCAC CCAGAATGGT chr11:86454569-86454649 32 1.50e-05 CTGTGAAAAC TGAGTCAC AGGTTGGTGA chr8:11711607-11711687 58 1.50e-05 GCTTGAACTC TGAGTCAC CCTCCTAAGT chr1:78227858-78227938 15 1.50e-05 GACACCCAGC TGAGTCAC TGATTCTGGA chr19:48829365-48829445 15 1.50e-05 GGGGTGGGGA TGAGTCAC CAGATGACTC chr1:52035586-52035666 43 1.50e-05 cataaggagg tgagtcac ctgcctaggg chr4:82646380-82646460 54 1.50e-05 GCTGACTGAG TGAGTCAC ATCTGCCTGC chr2:27544094-27544174 34 1.50e-05 CTGTCCAGCA TGAGTCAC CACACACGTA chr8:27474714-27474794 22 1.50e-05 TATCAGATGC TGAGTCAC TGGGCTGATT chr1:42335958-42336038 44 1.50e-05 CCCCCTAGTA TGAGTCAC ATTCGACTTA chr15:40559145-40559225 55 1.50e-05 agagagaggg tgagtcac ccccaggcat chrX:48350855-48350935 5 1.50e-05 CTTG TGAGTCAC CATGATAGGA chr4:74573748-74573828 73 1.50e-05 GCCAAGGATG TGAGTCAC chr2:173118072-173118152 67 1.50e-05 cagacacacG TGAGTCAC CCCTAC chr14:23005989-23006069 42 1.50e-05 GAGTCAGGCG TGAGTCAC CCAAGACTCT chrX:15598114-15598194 60 1.50e-05 cctagctgcc tgagtcac agctgataag chr3:39188641-39188721 18 2.95e-05 ATCCTGGCGC TGACTCAC AGGCTGGGTG chr7:37071706-37071786 63 2.95e-05 TCAGAAGAGA TGACTCAC AGTTCACGCT chr19:44288723-44288803 56 2.95e-05 GGGCTTCTTG TGACTCAC CCTTGGTCTC chr6:14744348-14744428 33 2.95e-05 GCCTCACCAG TGACTCAC TTGGTGACTC chr5:56989067-56989147 20 2.95e-05 GTTCAGCTGA TGACTCAC CAGGGGCCAG chr13:101045126-10104520 64 2.95e-05 gaaggtcaag tgactcac ccaaggtta chr19:45414607-45414687 49 2.95e-05 CCCCTGGAGA TGACTCAC cagggctgag chr10:21625975-21626055 54 2.95e-05 TGACTCAGGC TGACTCAC CAGGAGGCCC chr15:50429619-50429699 40 2.95e-05 TGCGTCATCA TGACTCAC AAGCGATCAA chr7:2570022-2570102 30 2.95e-05 CCCCAGAAGG TGACTCAC CCGGCAGGGG chr11:66185708-66185788 62 2.95e-05 CAGGCCAGGA TGACTCAC ACTGCCAGTA chr16:1052862-1052942 35 2.95e-05 GCAGCTGAGA TGACTCAC GTTCGGGGGT chr16:3072436-3072516 38 2.95e-05 GGTGAGGCTC TGACTCAC ACATTCTCAA chr2:10423590-10423670 23 2.95e-05 TGACTCACCC TGACTCAC TTCCAGTGGG chr19:5716440-5716520 61 2.95e-05 gccagtgTTT TGACTCAC TCCCTAACAC chr4:122077259-122077339 9 2.95e-05 TGTTTTCC TGACTCAC TGTGACAAAG chr21:47608424-47608504 54 4.31e-05 GTCAGGGTGA TGAGTCAT CTGGGACAGG chr8:123695705-123695785 65 4.31e-05 ACCCATGAGG TGAGTCAT CTGTCAAC chr4:169373016-169373096 54 4.31e-05 cttcagacca tgagtcat ttcacttgtc chr10:3848151-3848231 39 4.31e-05 TTCATCCGCG TGAGTCAT TGCCCTGCTG chr16:85645921-85646001 37 4.31e-05 GGACGCTCCC TGAGTCAT TCCAGTCAAG chr9:131069635-131069715 27 4.31e-05 gacggtgcag tgagtcat gtttgcacca chr22:40895302-40895382 28 4.31e-05 TGACTAATAC TGAGTCAT TTAAAGAACA chr4:72978412-72978492 30 4.31e-05 AGTCATGTTG TGAGTCAT ATTGTGACAT chr19:41169946-41170026 25 4.31e-05 cagcccagaa tgagtcat tgagaggacg chr17:32269572-32269652 55 4.31e-05 TAATGAGTGG TGAGTCAT CTCTCAGTGA chr17:62062598-62062678 36 4.31e-05 ATTGCCTCTA TGAGTCAT TTCCCAGCTG chr16:85063158-85063238 53 4.31e-05 AGGGGTGGGA TGAGTCAT GCTGTCTGCT chr16:79692285-79692365 50 5.62e-05 TTCACCAGGG TGACTCAT ACCTGGGATC chr2:71970134-71970214 44 5.62e-05 CCAAGGCCTG TGACTCAT CTCCAAGTCA chr2:234259534-234259614 37 5.62e-05 ATTCATAGTG TGACTCAT TCAATAAAGA chr5:134582730-134582810 60 5.62e-05 GGCAAGGGAG TGACTCAT GCTGATTTAA chr8:101912798-101912878 27 5.62e-05 GCAGTGCAGA TGACTCAT CTGGGTAACT chr2:217639952-217640032 54 5.62e-05 CCTGGAAGAA TGACTCAT GAATGGTGTT chr11:47545265-47545345 45 5.62e-05 TGCATGCTTA TGACTCAT GAGGGGATGG chr6:158998710-158998790 16 5.62e-05 agtaagagag tgactcat cacatacaag chr17:61040856-61040936 22 7.17e-05 GTGAGGACAG TGAGTCAG AGTTACTCAC chr10:6281355-6281435 30 7.17e-05 TGCTCCTGCA TGAGTCAG CAGATCACAG chr19:6088049-6088129 26 7.17e-05 TGCATGTTGG TGAGTCAG AGACGAGAAC chr11:120302975-12030305 5 8.67e-05 AGAG TGACTCAG TCTTGAATCA chr16:11709675-11709755 34 8.67e-05 tgactcaaga tgactcag tgtgggggta chr3:183250809-183250889 12 9.98e-05 TCTCCAAACA TTAGTCAC TGGACTTTCT chr6:110858579-110858659 45 9.98e-05 GACTAATGCA TTAGTCAC AGGTTACACT chr4:139572216-139572296 41 1.24e-04 tccaaaacct ttagtcat gcttcagcat -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAY MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:99160636-99160716 1.5e-05 52_[+1]_20 chr11:86454569-86454649 1.5e-05 31_[+1]_41 chr8:11711607-11711687 1.5e-05 57_[+1]_15 chr1:78227858-78227938 1.5e-05 14_[+1]_58 chr19:48829365-48829445 1.5e-05 14_[+1]_58 chr1:52035586-52035666 1.5e-05 42_[+1]_30 chr4:82646380-82646460 1.5e-05 53_[+1]_19 chr2:27544094-27544174 1.5e-05 33_[+1]_39 chr8:27474714-27474794 1.5e-05 21_[+1]_51 chr1:42335958-42336038 1.5e-05 43_[+1]_29 chr15:40559145-40559225 1.5e-05 54_[+1]_18 chrX:48350855-48350935 1.5e-05 4_[+1]_68 chr4:74573748-74573828 1.5e-05 72_[+1] chr2:173118072-173118152 1.5e-05 66_[+1]_6 chr14:23005989-23006069 1.5e-05 41_[+1]_31 chrX:15598114-15598194 1.5e-05 59_[+1]_13 chr3:39188641-39188721 2.9e-05 17_[+1]_55 chr7:37071706-37071786 2.9e-05 62_[+1]_10 chr19:44288723-44288803 2.9e-05 55_[+1]_17 chr6:14744348-14744428 2.9e-05 32_[+1]_40 chr5:56989067-56989147 2.9e-05 19_[+1]_53 chr13:101045126-10104520 2.9e-05 63_[+1]_9 chr19:45414607-45414687 2.9e-05 48_[+1]_24 chr10:21625975-21626055 2.9e-05 53_[+1]_19 chr15:50429619-50429699 2.9e-05 39_[+1]_33 chr7:2570022-2570102 2.9e-05 29_[+1]_43 chr11:66185708-66185788 2.9e-05 61_[+1]_11 chr16:1052862-1052942 2.9e-05 34_[+1]_38 chr16:3072436-3072516 2.9e-05 37_[+1]_35 chr2:10423590-10423670 2.9e-05 22_[+1]_50 chr19:5716440-5716520 2.9e-05 60_[+1]_12 chr4:122077259-122077339 2.9e-05 8_[+1]_64 chr21:47608424-47608504 4.3e-05 53_[+1]_19 chr8:123695705-123695785 4.3e-05 64_[+1]_8 chr4:169373016-169373096 4.3e-05 53_[+1]_19 chr10:3848151-3848231 4.3e-05 38_[+1]_34 chr16:85645921-85646001 4.3e-05 36_[+1]_36 chr9:131069635-131069715 4.3e-05 26_[+1]_46 chr22:40895302-40895382 4.3e-05 27_[+1]_45 chr4:72978412-72978492 4.3e-05 29_[+1]_43 chr19:41169946-41170026 4.3e-05 24_[+1]_48 chr17:32269572-32269652 4.3e-05 54_[+1]_18 chr17:62062598-62062678 4.3e-05 35_[+1]_37 chr16:85063158-85063238 4.3e-05 52_[+1]_20 chr16:79692285-79692365 5.6e-05 49_[+1]_23 chr2:71970134-71970214 5.6e-05 43_[+1]_29 chr2:234259534-234259614 5.6e-05 36_[+1]_36 chr5:134582730-134582810 5.6e-05 59_[+1]_13 chr8:101912798-101912878 5.6e-05 26_[+1]_46 chr2:217639952-217640032 5.6e-05 53_[+1]_19 chr11:47545265-47545345 5.6e-05 44_[+1]_28 chr6:158998710-158998790 5.6e-05 15_[+1]_57 chr17:61040856-61040936 7.2e-05 21_[+1]_51 chr10:6281355-6281435 7.2e-05 29_[+1]_43 chr19:6088049-6088129 7.2e-05 25_[+1]_47 chr11:120302975-12030305 8.7e-05 4_[+1]_68 chr16:11709675-11709755 8.7e-05 33_[+1]_39 chr3:183250809-183250889 0.0001 11_[+1]_61 chr6:110858579-110858659 0.0001 44_[+1]_28 chr4:139572216-139572296 0.00012 40_[+1]_32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAY MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGASTCAY width=8 seqs=60 chr7:99160636-99160716 ( 53) TGAGTCAC 1 chr11:86454569-86454649 ( 32) TGAGTCAC 1 chr8:11711607-11711687 ( 58) TGAGTCAC 1 chr1:78227858-78227938 ( 15) TGAGTCAC 1 chr19:48829365-48829445 ( 15) TGAGTCAC 1 chr1:52035586-52035666 ( 43) TGAGTCAC 1 chr4:82646380-82646460 ( 54) TGAGTCAC 1 chr2:27544094-27544174 ( 34) TGAGTCAC 1 chr8:27474714-27474794 ( 22) TGAGTCAC 1 chr1:42335958-42336038 ( 44) TGAGTCAC 1 chr15:40559145-40559225 ( 55) TGAGTCAC 1 chrX:48350855-48350935 ( 5) TGAGTCAC 1 chr4:74573748-74573828 ( 73) TGAGTCAC 1 chr2:173118072-173118152 ( 67) TGAGTCAC 1 chr14:23005989-23006069 ( 42) TGAGTCAC 1 chrX:15598114-15598194 ( 60) TGAGTCAC 1 chr3:39188641-39188721 ( 18) TGACTCAC 1 chr7:37071706-37071786 ( 63) TGACTCAC 1 chr19:44288723-44288803 ( 56) TGACTCAC 1 chr6:14744348-14744428 ( 33) TGACTCAC 1 chr5:56989067-56989147 ( 20) TGACTCAC 1 chr13:101045126-10104520 ( 64) TGACTCAC 1 chr19:45414607-45414687 ( 49) TGACTCAC 1 chr10:21625975-21626055 ( 54) TGACTCAC 1 chr15:50429619-50429699 ( 40) TGACTCAC 1 chr7:2570022-2570102 ( 30) TGACTCAC 1 chr11:66185708-66185788 ( 62) TGACTCAC 1 chr16:1052862-1052942 ( 35) TGACTCAC 1 chr16:3072436-3072516 ( 38) TGACTCAC 1 chr2:10423590-10423670 ( 23) TGACTCAC 1 chr19:5716440-5716520 ( 61) TGACTCAC 1 chr4:122077259-122077339 ( 9) TGACTCAC 1 chr21:47608424-47608504 ( 54) TGAGTCAT 1 chr8:123695705-123695785 ( 65) TGAGTCAT 1 chr4:169373016-169373096 ( 54) TGAGTCAT 1 chr10:3848151-3848231 ( 39) TGAGTCAT 1 chr16:85645921-85646001 ( 37) TGAGTCAT 1 chr9:131069635-131069715 ( 27) TGAGTCAT 1 chr22:40895302-40895382 ( 28) TGAGTCAT 1 chr4:72978412-72978492 ( 30) TGAGTCAT 1 chr19:41169946-41170026 ( 25) TGAGTCAT 1 chr17:32269572-32269652 ( 55) TGAGTCAT 1 chr17:62062598-62062678 ( 36) TGAGTCAT 1 chr16:85063158-85063238 ( 53) TGAGTCAT 1 chr16:79692285-79692365 ( 50) TGACTCAT 1 chr2:71970134-71970214 ( 44) TGACTCAT 1 chr2:234259534-234259614 ( 37) TGACTCAT 1 chr5:134582730-134582810 ( 60) TGACTCAT 1 chr8:101912798-101912878 ( 27) TGACTCAT 1 chr2:217639952-217640032 ( 54) TGACTCAT 1 chr11:47545265-47545345 ( 45) TGACTCAT 1 chr6:158998710-158998790 ( 16) TGACTCAT 1 chr17:61040856-61040936 ( 22) TGAGTCAG 1 chr10:6281355-6281435 ( 30) TGAGTCAG 1 chr19:6088049-6088129 ( 26) TGAGTCAG 1 chr11:120302975-12030305 ( 5) TGACTCAG 1 chr16:11709675-11709755 ( 34) TGACTCAG 1 chr3:183250809-183250889 ( 12) TTAGTCAC 1 chr6:110858579-110858659 ( 45) TTAGTCAC 1 chr4:139572216-139572296 ( 41) TTAGTCAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAY MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.52138 E= 1.6e-056 -1255 -1255 -1255 211 -1255 -1255 184 -221 202 -1255 -1255 -1255 -1255 76 110 -1255 -1255 -1255 -1255 211 -1255 196 -1255 -1255 202 -1255 -1255 -1255 -1255 114 -167 59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAY MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 60 E= 1.6e-056 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.950000 0.050000 1.000000 0.000000 0.000000 0.000000 0.000000 0.433333 0.566667 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.566667 0.083333 0.350000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGASTCAY MEME-1 regular expression -------------------------------------------------------------------------------- TGA[GC]TCA[CT] -------------------------------------------------------------------------------- Time 5.03 secs. ******************************************************************************** ******************************************************************************** MOTIF TCCCTDRV MEME-2 width = 8 sites = 96 llr = 732 E-value = 5.6e-048 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCCCTDRV MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::563 pos.-specific C 2aaa:::3 probability G :::::344 matrix T 8:::a3:1 bits 2.1 * 1.9 **** 1.7 **** 1.5 **** Relative 1.3 ***** Entropy 1.1 ***** * (11.0 bits) 0.8 ***** * 0.6 ***** * 0.4 ******* 0.2 ******** 0.0 -------- Multilevel TCCCTAAG consensus C GGA sequence T C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCTDRV MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:195823425-195823505 60 1.45e-05 TCAGCAACGG TCCCTAAG ACCATTCAGC chrX:2376002-2376082 45 1.45e-05 CTGAAGACGT TCCCTAAG AATGCGGCCA chrX:2375448-2375528 71 1.45e-05 CTGAAGACAT TCCCTAAG AT chrX:2386902-2386982 73 1.45e-05 CTGAAGACGT TCCCTAAG chrX:2392448-2392528 42 1.45e-05 CTGAAGACAT TCCCTAAG AATGCAGCCA chrX:2370560-2370640 62 1.45e-05 CTGAAGATGT TCCCTAAG CATGTGGCCA chr1:221861171-221861251 55 1.45e-05 AAACCACCAG TCCCTAAG CCCAAGTGGG chrX:2393621-2393701 44 1.45e-05 CTGAAGACGT TCCCTAAG CATACAGCCA chrX:2369927-2370007 72 1.45e-05 TTGAAGACAT TCCCTAAG T chrX:2382122-2382202 66 1.45e-05 CTGAAGACGC TCCCTAAG AATGCAG chrX:2393419-2393499 53 1.45e-05 CTGAAGACAG TCCCTAAG CATGTGGCAC chr8:134581231-134581311 67 1.45e-05 GACTCCACAC TCCCTAAG AAACCC chrX:2397287-2397367 32 1.45e-05 CTGAAGACAT TCCCTAAG CATGTGGCCC chr2:217639952-217640032 26 2.79e-05 AGCTCACAGA TCCCTAAA GCCCTTGTGG chr17:43176724-43176804 62 2.79e-05 TTGGCATCGG TCCCTAAA CCCACGGAAG chr16:86825046-86825126 25 2.79e-05 TTAGAGATGA TCCCTAAA GTTAGGGACC chr1:26333396-26333476 10 2.79e-05 ACCAGCCGG TCCCTAAA CACATTTCAC chr1:92182003-92182083 55 4.19e-05 TTTCAGATAG TCCCTAAC TAAAGCCAAC chr14:55575131-55575211 43 4.19e-05 AGTAGAACAG TCCCTAAC CACATGAACA chr2:33359993-33360073 51 4.19e-05 TCCTCCACGG TCCCTAAC TGTCCTTACT chr19:5716440-5716520 69 4.19e-05 TTTGACTCAC TCCCTAAC ACAG chr5:141532115-141532195 65 4.19e-05 TTTGAGATGA TCCCTAAC ATACTGTA chr1:236517849-236517929 52 4.19e-05 cttgctaaac tccctaac agtaggaatt chr21:36089815-36089895 65 4.19e-05 GCCTCCACCA TCCCTAAC CAACCTCT chr2:219260976-219261056 56 5.75e-05 TTATAGACGT TCCCTAGG CTGTTTCTAG chr6:13847128-13847208 19 5.75e-05 aactttccga tccctagg ggagggggtg chr1:145110669-145110749 47 5.75e-05 gttgttacca tccctagg cctgaatgta chrX:2387450-2387530 28 5.75e-05 CTGAAGACAC TCCCTAGG CATGTGGCCA chr7:129712174-129712254 59 7.12e-05 ATTTCTGCAT TCCCTTAG CACACAAGAC chr11:123986030-12398611 33 7.12e-05 TTTCCGTTGA TCCCTTAG TCTTGTAGTC chr5:133448034-133448114 54 7.12e-05 cagtagatga tcCCTTAG CAAGCCTTCA chr19:14550923-14551003 48 7.12e-05 GAACAGGAGG TCCCTTAG ATGCCCTGGA chr12:48746309-48746389 71 7.12e-05 ttcaccccat tcccttag cc chr17:47100152-47100232 72 7.12e-05 AAACTGGGGT TCCCTTAG G chr13:52548708-52548788 52 8.68e-05 ATTTACATGG TCCCTGAG GTCTTCGGGC chr11:69453774-69453854 48 8.68e-05 TTTGCGCTCG TCCCTGAG CCGGGAAATC chr11:18547873-18547953 53 1.01e-04 GACTGGAGGA TCCCTAGA TTGGGACAGG chr12:95348112-95348192 54 1.01e-04 GACTCTGTGT TCCCTAGA TAAGGAGCAG chr11:76494161-76494241 31 1.01e-04 TTTGAGACGC TCCCTAGA GTGGAACCCG chr19:29017121-29017201 61 1.29e-04 ttagccacac tccctagc tgtgctagag chr1:90359981-90360061 73 1.29e-04 ATTGAGATGC TCCCTTAA chr17:76164534-76164614 62 1.29e-04 TTGCCCTCGG TCCCTAGC GGCGCCTGGC chr7:29789728-29789808 48 1.29e-04 aaaatccaaa tcccttaa catagcatag chr16:67225916-67225996 32 1.57e-04 TTGCTACTGG TCCCTGAA GTTTTGCGGC chr4:109517537-109517617 31 1.57e-04 gtttccataa tcccttac tgctcaggga chr11:62369530-62369610 69 1.57e-04 TGGTCTACGC TCCCTTAC CCTT chr11:57171298-57171378 34 1.57e-04 CTGTTGGCTG TCCCTTAC ACGGCATGTG chr2:45006070-45006150 26 1.57e-04 TTTCCCCCAC TCCCTTAC TTTGAGATTT chr1:200375589-200375669 17 1.57e-04 ATGTCTTCGA TCCCTTAC TTAAATGACG chr4:79502999-79503079 18 1.57e-04 CTCTTCCTCT TCCCTTAC CCCAATCTAA chr1:151689398-151689478 27 1.86e-04 ATCTCCATCC TCCCTGAC TCCCTTCCCG chr16:69466098-69466178 45 1.86e-04 TTAcagacag tccctgac ttactagggc chr11:64794802-64794882 34 1.86e-04 TTTCAGACGC TCCCTTGG CCGCGCACCC chr4:56586546-56586626 68 1.86e-04 CTTTGAGTGC TCCCTTGG TGATC chr10:104953117-10495319 53 1.86e-04 AAGCCGACGC TCCCTGAC CGCGCTGCGT chr12:48177405-48177485 65 2.03e-04 TTTCTCACGC TCCCTGGG ATAACTGT chrX:48350855-48350935 41 2.03e-04 GGTCAGGAAG TCCCTGGG AGCAAGGCTT chr13:50783097-50783177 61 2.03e-04 TTCTCCACGC TCCCTGGG GTTGCTCAGC chr11:8625659-8625739 24 2.03e-04 TTTCTGACGA TCCCTGGG GCTAAATGAG chr18:32925797-32925877 58 2.19e-04 TTGGATACGG CCCCTAAG CAACTTGGCT chr12:8085959-8086039 48 2.19e-04 TTGTAACTAA CCCCTAAG GGATAATACA chr8:101912798-101912878 44 2.33e-04 TCTGGGTAAC TCCCTTGA CAGAAGGAGC chrX:67804105-67804185 50 2.33e-04 TGTTACTACG TCCCTTGA CAATAAACAA chr21:46222655-46222735 73 2.33e-04 ttgcagatga tcccttga chr6:32753796-32753876 32 2.33e-04 AAGCAGCAGC TCCCTTGA ATTTTTAAAG chr5:102456679-102456759 71 2.63e-04 AGGGTGATGA TCCCTGGA TC chr6:44174339-44174419 45 2.63e-04 ttgtttctga tcccttgc ctcctgggga chr11:47627605-47627685 41 2.63e-04 ttggcaaagg tccctgga tcttatctgc chr20:47463118-47463198 56 2.63e-04 TTGTAGACGC TCCCTGGA CCCCAGCAAA chr7:102004074-102004154 7 3.06e-04 AAATGG CCCCTAAA CTTGGAGGGC chr7:72349742-72349822 16 3.06e-04 TTTAAGACGG CCCCTAAA CTTGGGGAGC chr1:154357641-154357721 57 3.06e-04 aagcacccga tccctaat gacagaggag chr7:6769204-6769284 52 3.06e-04 TTTGAAATGG CCCCTAAA GTTGGGGGGC chr6:111585190-111585270 47 3.06e-04 CTTGCAATGC CCCCTAAA ATGACACAGA chr19:18439654-18439734 67 3.06e-04 ttgcagtctg tccctggc aaaaga chr8:23332933-23333013 30 3.06e-04 ATTTTTATAA TCCCTAAT CTGACTCGAT chr18:34004936-34005016 68 3.39e-04 taaagtgcgt cccctagg gaaaa chr17:55362461-55362541 15 3.54e-04 TTGCATCCTT CCCCTTAG ATAAGGAACC chr2:134877365-134877445 49 3.71e-04 TTGCCGACGG CCCCTGAG AAGCTGGGGC chr3:67068677-67068757 60 4.01e-04 TTCCTCCCAC TCCCTAGT GAGCAGGGAC chr2:166810249-166810329 42 4.44e-04 GAATTCAGCT CCCCTAGC CTCCCGGAGC chr7:150130966-150131046 69 4.44e-04 ACTAGGATGG CCCCTAGC TAAG chrX:15598114-15598194 48 4.44e-04 tatccaccat cccctagc tgcctgagtc chr2:61034511-61034591 72 4.44e-04 AGCAGTCACT CCCCTAGC A chr16:87329051-87329131 13 4.44e-04 TTACACACAC TCCCTTAT CTAGGGGGAG chr2:37789559-37789639 48 4.88e-04 cagcacggat cccctgaa caaagggatg chr19:6088049-6088129 60 4.88e-04 GAAGCAATGA CCCCTGAA CACAGAGCCC chr10:71616669-71616749 28 4.88e-04 GCAAGGCTCA TCCCTGAT TGATTTCCAC chr11:110045044-11004512 47 5.21e-04 ACCGCACACA CCCCTGAC CGAAGTGAAA chr1:31502506-31502586 8 5.39e-04 CCACCTA CCCCTGGG CAAGGGATTC chr2:100895447-100895527 63 5.39e-04 aactcctcaa cccctggg ggaggagcac chr20:47444644-47444724 66 5.39e-04 GTGCACGGGG CCCCTGGG GACGCGG chr17:30228080-30228160 71 5.39e-04 ttatccactc cccctggg ct chr10:120851694-12085177 18 5.67e-04 TATTTCAGAT CCCCTTGA TGGTTCTAAC chr19:45414607-45414687 39 6.15e-04 CAGCACCCCT CCCCTGGA GATGACTCAC chr12:10562213-10562293 44 6.15e-04 TTTGACAGGA TCCCTGGT ATAGGCAAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCTDRV MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:195823425-195823505 1.4e-05 59_[+2]_13 chrX:2376002-2376082 1.4e-05 44_[+2]_28 chrX:2375448-2375528 1.4e-05 70_[+2]_2 chrX:2386902-2386982 1.4e-05 72_[+2] chrX:2392448-2392528 1.4e-05 41_[+2]_31 chrX:2370560-2370640 1.4e-05 61_[+2]_11 chr1:221861171-221861251 1.4e-05 54_[+2]_18 chrX:2393621-2393701 1.4e-05 43_[+2]_29 chrX:2369927-2370007 1.4e-05 71_[+2]_1 chrX:2382122-2382202 1.4e-05 65_[+2]_7 chrX:2393419-2393499 1.4e-05 52_[+2]_20 chr8:134581231-134581311 1.4e-05 66_[+2]_6 chrX:2397287-2397367 1.4e-05 31_[+2]_41 chr2:217639952-217640032 2.8e-05 25_[+2]_47 chr17:43176724-43176804 2.8e-05 61_[+2]_11 chr16:86825046-86825126 2.8e-05 24_[+2]_48 chr1:26333396-26333476 2.8e-05 9_[+2]_63 chr1:92182003-92182083 4.2e-05 54_[+2]_18 chr14:55575131-55575211 4.2e-05 42_[+2]_30 chr2:33359993-33360073 4.2e-05 50_[+2]_22 chr19:5716440-5716520 4.2e-05 68_[+2]_4 chr5:141532115-141532195 4.2e-05 64_[+2]_8 chr1:236517849-236517929 4.2e-05 51_[+2]_21 chr21:36089815-36089895 4.2e-05 64_[+2]_8 chr2:219260976-219261056 5.8e-05 55_[+2]_17 chr6:13847128-13847208 5.8e-05 18_[+2]_54 chr1:145110669-145110749 5.8e-05 46_[+2]_26 chrX:2387450-2387530 5.8e-05 27_[+2]_45 chr7:129712174-129712254 7.1e-05 58_[+2]_14 chr11:123986030-12398611 7.1e-05 32_[+2]_40 chr5:133448034-133448114 7.1e-05 53_[+2]_19 chr19:14550923-14551003 7.1e-05 47_[+2]_25 chr12:48746309-48746389 7.1e-05 70_[+2]_2 chr17:47100152-47100232 7.1e-05 71_[+2]_1 chr13:52548708-52548788 8.7e-05 51_[+2]_21 chr11:69453774-69453854 8.7e-05 47_[+2]_25 chr11:18547873-18547953 0.0001 52_[+2]_20 chr12:95348112-95348192 0.0001 53_[+2]_19 chr11:76494161-76494241 0.0001 30_[+2]_42 chr19:29017121-29017201 0.00013 60_[+2]_12 chr1:90359981-90360061 0.00013 72_[+2] chr17:76164534-76164614 0.00013 61_[+2]_11 chr7:29789728-29789808 0.00013 47_[+2]_25 chr16:67225916-67225996 0.00016 31_[+2]_41 chr4:109517537-109517617 0.00016 30_[+2]_42 chr11:62369530-62369610 0.00016 68_[+2]_4 chr11:57171298-57171378 0.00016 33_[+2]_39 chr2:45006070-45006150 0.00016 25_[+2]_47 chr1:200375589-200375669 0.00016 16_[+2]_56 chr4:79502999-79503079 0.00016 17_[+2]_55 chr1:151689398-151689478 0.00019 26_[+2]_46 chr16:69466098-69466178 0.00019 44_[+2]_28 chr11:64794802-64794882 0.00019 33_[+2]_39 chr4:56586546-56586626 0.00019 67_[+2]_5 chr10:104953117-10495319 0.00019 52_[+2]_20 chr12:48177405-48177485 0.0002 64_[+2]_8 chrX:48350855-48350935 0.0002 40_[+2]_32 chr13:50783097-50783177 0.0002 60_[+2]_12 chr11:8625659-8625739 0.0002 23_[+2]_49 chr18:32925797-32925877 0.00022 57_[+2]_15 chr12:8085959-8086039 0.00022 47_[+2]_25 chr8:101912798-101912878 0.00023 43_[+2]_29 chrX:67804105-67804185 0.00023 49_[+2]_23 chr21:46222655-46222735 0.00023 72_[+2] chr6:32753796-32753876 0.00023 31_[+2]_41 chr5:102456679-102456759 0.00026 70_[+2]_2 chr6:44174339-44174419 0.00026 44_[+2]_28 chr11:47627605-47627685 0.00026 40_[+2]_32 chr20:47463118-47463198 0.00026 55_[+2]_17 chr7:102004074-102004154 0.00031 6_[+2]_66 chr7:72349742-72349822 0.00031 15_[+2]_57 chr1:154357641-154357721 0.00031 56_[+2]_16 chr7:6769204-6769284 0.00031 51_[+2]_21 chr6:111585190-111585270 0.00031 46_[+2]_26 chr19:18439654-18439734 0.00031 66_[+2]_6 chr8:23332933-23333013 0.00031 29_[+2]_43 chr18:34004936-34005016 0.00034 67_[+2]_5 chr17:55362461-55362541 0.00035 14_[+2]_58 chr2:134877365-134877445 0.00037 48_[+2]_24 chr3:67068677-67068757 0.0004 59_[+2]_13 chr2:166810249-166810329 0.00044 41_[+2]_31 chr7:150130966-150131046 0.00044 68_[+2]_4 chrX:15598114-15598194 0.00044 47_[+2]_25 chr2:61034511-61034591 0.00044 71_[+2]_1 chr16:87329051-87329131 0.00044 12_[+2]_60 chr2:37789559-37789639 0.00049 47_[+2]_25 chr19:6088049-6088129 0.00049 59_[+2]_13 chr10:71616669-71616749 0.00049 27_[+2]_45 chr11:110045044-11004512 0.00052 46_[+2]_26 chr1:31502506-31502586 0.00054 7_[+2]_65 chr2:100895447-100895527 0.00054 62_[+2]_10 chr20:47444644-47444724 0.00054 65_[+2]_7 chr17:30228080-30228160 0.00054 70_[+2]_2 chr10:120851694-12085177 0.00057 17_[+2]_55 chr19:45414607-45414687 0.00061 38_[+2]_34 chr12:10562213-10562293 0.00061 43_[+2]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCTDRV MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCCCTDRV width=8 seqs=96 chr3:195823425-195823505 ( 60) TCCCTAAG 1 chrX:2376002-2376082 ( 45) TCCCTAAG 1 chrX:2375448-2375528 ( 71) TCCCTAAG 1 chrX:2386902-2386982 ( 73) TCCCTAAG 1 chrX:2392448-2392528 ( 42) TCCCTAAG 1 chrX:2370560-2370640 ( 62) TCCCTAAG 1 chr1:221861171-221861251 ( 55) TCCCTAAG 1 chrX:2393621-2393701 ( 44) TCCCTAAG 1 chrX:2369927-2370007 ( 72) TCCCTAAG 1 chrX:2382122-2382202 ( 66) TCCCTAAG 1 chrX:2393419-2393499 ( 53) TCCCTAAG 1 chr8:134581231-134581311 ( 67) TCCCTAAG 1 chrX:2397287-2397367 ( 32) TCCCTAAG 1 chr2:217639952-217640032 ( 26) TCCCTAAA 1 chr17:43176724-43176804 ( 62) TCCCTAAA 1 chr16:86825046-86825126 ( 25) TCCCTAAA 1 chr1:26333396-26333476 ( 10) TCCCTAAA 1 chr1:92182003-92182083 ( 55) TCCCTAAC 1 chr14:55575131-55575211 ( 43) TCCCTAAC 1 chr2:33359993-33360073 ( 51) TCCCTAAC 1 chr19:5716440-5716520 ( 69) TCCCTAAC 1 chr5:141532115-141532195 ( 65) TCCCTAAC 1 chr1:236517849-236517929 ( 52) TCCCTAAC 1 chr21:36089815-36089895 ( 65) TCCCTAAC 1 chr2:219260976-219261056 ( 56) TCCCTAGG 1 chr6:13847128-13847208 ( 19) TCCCTAGG 1 chr1:145110669-145110749 ( 47) TCCCTAGG 1 chrX:2387450-2387530 ( 28) TCCCTAGG 1 chr7:129712174-129712254 ( 59) TCCCTTAG 1 chr11:123986030-12398611 ( 33) TCCCTTAG 1 chr5:133448034-133448114 ( 54) TCCCTTAG 1 chr19:14550923-14551003 ( 48) TCCCTTAG 1 chr12:48746309-48746389 ( 71) TCCCTTAG 1 chr17:47100152-47100232 ( 72) TCCCTTAG 1 chr13:52548708-52548788 ( 52) TCCCTGAG 1 chr11:69453774-69453854 ( 48) TCCCTGAG 1 chr11:18547873-18547953 ( 53) TCCCTAGA 1 chr12:95348112-95348192 ( 54) TCCCTAGA 1 chr11:76494161-76494241 ( 31) TCCCTAGA 1 chr19:29017121-29017201 ( 61) TCCCTAGC 1 chr1:90359981-90360061 ( 73) TCCCTTAA 1 chr17:76164534-76164614 ( 62) TCCCTAGC 1 chr7:29789728-29789808 ( 48) TCCCTTAA 1 chr16:67225916-67225996 ( 32) TCCCTGAA 1 chr4:109517537-109517617 ( 31) TCCCTTAC 1 chr11:62369530-62369610 ( 69) TCCCTTAC 1 chr11:57171298-57171378 ( 34) TCCCTTAC 1 chr2:45006070-45006150 ( 26) TCCCTTAC 1 chr1:200375589-200375669 ( 17) TCCCTTAC 1 chr4:79502999-79503079 ( 18) TCCCTTAC 1 chr1:151689398-151689478 ( 27) TCCCTGAC 1 chr16:69466098-69466178 ( 45) TCCCTGAC 1 chr11:64794802-64794882 ( 34) TCCCTTGG 1 chr4:56586546-56586626 ( 68) TCCCTTGG 1 chr10:104953117-10495319 ( 53) TCCCTGAC 1 chr12:48177405-48177485 ( 65) TCCCTGGG 1 chrX:48350855-48350935 ( 41) TCCCTGGG 1 chr13:50783097-50783177 ( 61) TCCCTGGG 1 chr11:8625659-8625739 ( 24) TCCCTGGG 1 chr18:32925797-32925877 ( 58) CCCCTAAG 1 chr12:8085959-8086039 ( 48) CCCCTAAG 1 chr8:101912798-101912878 ( 44) TCCCTTGA 1 chrX:67804105-67804185 ( 50) TCCCTTGA 1 chr21:46222655-46222735 ( 73) TCCCTTGA 1 chr6:32753796-32753876 ( 32) TCCCTTGA 1 chr5:102456679-102456759 ( 71) TCCCTGGA 1 chr6:44174339-44174419 ( 45) TCCCTTGC 1 chr11:47627605-47627685 ( 41) TCCCTGGA 1 chr20:47463118-47463198 ( 56) TCCCTGGA 1 chr7:102004074-102004154 ( 7) CCCCTAAA 1 chr7:72349742-72349822 ( 16) CCCCTAAA 1 chr1:154357641-154357721 ( 57) TCCCTAAT 1 chr7:6769204-6769284 ( 52) CCCCTAAA 1 chr6:111585190-111585270 ( 47) CCCCTAAA 1 chr19:18439654-18439734 ( 67) TCCCTGGC 1 chr8:23332933-23333013 ( 30) TCCCTAAT 1 chr18:34004936-34005016 ( 68) CCCCTAGG 1 chr17:55362461-55362541 ( 15) CCCCTTAG 1 chr2:134877365-134877445 ( 49) CCCCTGAG 1 chr3:67068677-67068757 ( 60) TCCCTAGT 1 chr2:166810249-166810329 ( 42) CCCCTAGC 1 chr7:150130966-150131046 ( 69) CCCCTAGC 1 chrX:15598114-15598194 ( 48) CCCCTAGC 1 chr2:61034511-61034591 ( 72) CCCCTAGC 1 chr16:87329051-87329131 ( 13) TCCCTTAT 1 chr2:37789559-37789639 ( 48) CCCCTGAA 1 chr19:6088049-6088129 ( 60) CCCCTGAA 1 chr10:71616669-71616749 ( 28) TCCCTGAT 1 chr11:110045044-11004512 ( 47) CCCCTGAC 1 chr1:31502506-31502586 ( 8) CCCCTGGG 1 chr2:100895447-100895527 ( 63) CCCCTGGG 1 chr20:47444644-47444724 ( 66) CCCCTGGG 1 chr17:30228080-30228160 ( 71) CCCCTGGG 1 chr10:120851694-12085177 ( 18) CCCCTTGA 1 chr19:45414607-45414687 ( 39) CCCCTGGA 1 chr12:10562213-10562293 ( 44) TCCCTGGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCTDRV MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.15308 E= 5.6e-048 -1323 -16 -1323 173 -1323 196 -1323 -1323 -1323 196 -1323 -1323 -1323 196 -1323 -1323 -1323 -1323 -1323 211 99 -1323 -3 11 132 -1323 54 -1323 8 2 65 -189 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCTDRV MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 96 E= 5.6e-048 0.000000 0.229167 0.000000 0.770833 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.489583 0.000000 0.260417 0.250000 0.614583 0.000000 0.385417 0.000000 0.260417 0.260417 0.416667 0.062500 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCTDRV MEME-2 regular expression -------------------------------------------------------------------------------- [TC]CCCT[AGT][AG][GAC] -------------------------------------------------------------------------------- Time 8.76 secs. ******************************************************************************** ******************************************************************************** MOTIF YWAGGGAY MEME-3 width = 8 sites = 81 llr = 617 E-value = 1.7e-030 ******************************************************************************** -------------------------------------------------------------------------------- Motif YWAGGGAY MEME-3 Description -------------------------------------------------------------------------------- Simplified A 14a:::a1 pos.-specific C 42:::::5 probability G :::aaa:2 matrix T 54:::::2 bits 2.1 * 1.9 **** 1.7 ***** 1.5 ***** Relative 1.3 ***** Entropy 1.1 ***** (11.0 bits) 0.8 ***** 0.6 ******* 0.4 ******* 0.2 ******** 0.0 -------- Multilevel TAAGGGAC consensus CT T sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YWAGGGAY MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:2376002-2376082 11 1.65e-05 AGCTTGTGGC TAAGGGAC CACCGCAGTG chrX:2375448-2375528 37 1.65e-05 AGCATGTGGC TAAGGGAC TGCTACCATT chrX:2392448-2392528 8 1.65e-05 ATGTGGC TAAGGGAC CGCCCCCATG chrX:2382122-2382202 32 1.65e-05 AGTACGTGGC TAAGGGAC GGCCGCCATG chr7:27881950-27882030 4 1.65e-05 CAT TAAGGGAC GGTGTGCTTT chr17:47100152-47100232 20 1.65e-05 TAGATTGTAC TAAGGGAC CATCTTGAAA chr10:1015818-1015898 19 1.65e-05 ACATGGAAGG TAAGGGAC CGTGAGCATT chr17:53802923-53803003 48 1.65e-05 TAAACACAAT TAAGGGAC CGGAGACAAT chr16:420604-420684 15 3.20e-05 GCTTCCGTCT TTAGGGAC CGTAAAAAAC chr14:24583640-24583720 65 3.20e-05 CAAATGATCT TTAGGGAC AGACAGTA chrX:153606922-153607002 32 3.20e-05 CCCAAGCGAC TTAGGGAC CAGAGCCACC chr5:159243498-159243578 14 3.20e-05 AGCCCAGGCC TTAGGGAC CGTCCAAAAA chr19:8767057-8767137 19 3.20e-05 TGCAGGCAAG TTAGGGAC ACAGACCTCC chr16:86825046-86825126 34 3.20e-05 ATCCCTAAAG TTAGGGAC CACACTTCCT chr16:47618858-47618938 19 3.20e-05 ACCCTTGGCC TTAGGGAC TGTCTCAAAA chr20:43324511-43324591 12 3.20e-05 gtgactgtct ttagggac tgtccacaaa chr7:150974269-150974349 36 3.20e-05 TAATAATGAG TTAGGGAC CGGAGCAGGA chr17:39662460-39662540 10 3.20e-05 taagggatc ttagggac catcagacac chr2:46727544-46727624 1 5.01e-05 . CAAGGGAC CGTCTCAAAA chrX:2393621-2393701 60 5.01e-05 AGCATACAGC CAAGGGAC TGCCACCGTG chrX:2393419-2393499 70 5.01e-05 GCATGTGGCA CAAGGGAC CGC chrX:2397287-2397367 49 5.01e-05 GCATGTGGCC CAAGGGAC TCCCGCACTG chrX:2387450-2387530 44 5.01e-05 GGCATGTGGC CAAGGGAC CGCCACCCTA chr8:103251199-103251279 20 8.22e-05 GCCCCCAGCT CTAGGGAC Tcggccggcc chr10:75255813-75255893 5 8.22e-05 GGCT CTAGGGAC TTGGGCAAAA chr8:1845591-1845671 48 8.22e-05 GGCTCTGTCC TAAGGGAT CGGATCGCAG chr18:19748439-19748519 34 8.22e-05 CTTTTGCCCG CTAGGGAC CGTATCAGTT chr4:56586546-56586626 23 8.22e-05 AGTTAGACAT CTAGGGAC CATCCAAGAC chr1:36840259-36840339 58 9.62e-05 GCACCCTGGC TTAGGGAT GTTTGCGGTG chr1:151628070-151628150 24 9.62e-05 tgagattatg ttagggat catcttgttt chr2:236299147-236299227 22 9.62e-05 gtgtggacct ttagggat catcatccag chr3:67068677-67068757 7 9.62e-05 TTAAAC TTAGGGAT CAAACTTAGC chr2:100895447-100895527 6 1.13e-04 aaact taagggag cgtcttgctt chr6:53480600-53480680 8 1.13e-04 GCTTAAA TAAGGGAG TGTGCACCAA chr2:201676017-201676097 61 1.13e-04 TCTTCGCTCT TAAGGGAG GTAGTGAACA chr1:7177768-7177848 7 1.13e-04 ACCAGT TAAGGGAG TGTCTAAAAA chr19:46012538-46012618 33 1.29e-04 AGGGGTCAGT TTAGGGAG CGTCGCTCTC chr3:183250809-183250889 52 1.29e-04 CATGAACAGG TTAGGGAG CCGTTATCTC chrX:48350855-48350935 69 1.29e-04 AGGGTTAGGG TTAGGGAG AAAA chr19:31389831-31389911 30 1.29e-04 GGAAACAAGC TTAGGGAG TGTCTCACAA chr19:38646286-38646366 3 1.29e-04 TC TTAGGGAG TGTCTGAGAA chr6:90487213-90487293 13 1.63e-04 ccctctttgc tcagggac cgaaacctaa chr1:31502506-31502586 16 1.63e-04 TACCCCTGGG CAAGGGAT TCAAGAGTAC chr16:87120351-87120431 2 1.63e-04 C CAAGGGAT CATCCCAAAA chr6:158998710-158998790 30 1.63e-04 tcatcacata caagggat cctcagtaag chr1:153950450-153950530 9 1.63e-04 TTGGAGGT CAAGGGAT GGAGGCGAAA chr21:33788404-33788484 21 1.63e-04 CCATAAAAAG CAAGGGAT CCTCATATTT chr17:45335111-45335191 4 1.63e-04 ACT CAAGGGAT CCTCTGTAAA chr5:134582730-134582810 52 1.97e-04 GTGAGGAAGG CAAGGGAG TGACTCATGC chr9:119200071-119200151 18 1.97e-04 CTTTCATGTG CAAGGGAG AAAGTTAAAG chr8:91237211-91237291 2 2.15e-04 T CTAGGGAG AGGCAGAACT chr6:17972953-17973033 6 2.15e-04 GCAGT CTAGGGAG TGTCTCCCCA chr7:26155397-26155477 3 2.15e-04 CG CTAGGGAG CATCTTTAAA chr3:154914496-154914576 51 2.34e-04 GACTTTCTCT CCAGGGAC CTTCTGCCTC chr6:28370111-28370191 38 2.34e-04 GGCATAGTTC CCAGGGAC CTAGGTGAAA chr20:47444644-47444724 1 2.34e-04 . CCAGGGAC CGTCTGCCAA chr14:105506028-10550610 24 2.34e-04 tcctgaaggc ccagggac tatcgcggaa chr4:109517537-109517617 42 2.49e-04 cccttactgc tcagggat catgtgccca chr4:48782709-48782789 60 2.85e-04 GGAAAGCTGG AAAGGGAC AAGAGAAAAA chr12:48177405-48177485 47 3.18e-04 CATTCTAGAC CCAGGGAT TTTCTCACGC chr2:75904581-75904661 61 3.18e-04 tgggcacaag ccagggat gctgctaagc chr21:33786192-33786272 26 3.18e-04 TCCTCCTTCT CCAGGGAT CTTCTGCCAA chr7:6746822-6746902 44 3.34e-04 TGACTATCTT TAAGGGAA CGTCTAGAAA chr12:8085959-8086039 20 3.34e-04 AGCCCTCTGC TAAGGGAA CCCAGCTTCT chr6:4380323-4380403 51 3.34e-04 ACAACTGAGG TAAGGGAA CATCAGTAAA chr19:44288723-44288803 1 3.68e-04 . CCAGGGAG GGGCCAAGGG chr16:21272528-21272608 26 3.68e-04 GGATTTGTGC CCAGGGAG CAATGGATCT chr16:58060147-58060227 29 3.68e-04 GGGCCAGGAG CCAGGGAG CGTCGCAAGT chr2:37789559-37789639 57 3.84e-04 tcccctgaac aaagggat gattcacatc chr21:38318317-38318397 16 3.84e-04 gggagcacta aaagggat catccataaa chr4:139572216-139572296 18 3.99e-04 aaggtagggg atagggat gaaagtccaa chr17:43176724-43176804 1 3.99e-04 . ATAGGGAT TGGCCAGAAC chr10:6281355-6281435 49 4.35e-04 AGATCACAGG AAAGGGAG TTGAGTCGCA chr5:134585488-134585568 7 4.35e-04 GAGTCA CAAGGGAA CTTTTGTTGA chr15:43398237-43398317 58 4.86e-04 GGTCGGAGAG ACAGGGAC GACACTTTTA chrX:67804105-67804185 67 4.86e-04 ACAATAAACA ACAGGGAC AGAGAT chr19:38527900-38527980 7 5.03e-04 gagagg tcagggaa cgtctgtcat chr7:129712174-129712254 27 5.37e-04 TGATTTCTGC TAAGGGGC TTCAGTGTAG chr19:56159340-56159420 18 5.37e-04 GGGAGTGCTG TAAGGGGC TATCGCGCAA chr12:48746309-48746389 27 5.54e-04 gtcagagata ttaggggc cagtcctgga chr13:50783097-50783177 5 6.92e-04 AGGC TTAGGGGT GTTTCTTCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YWAGGGAY MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:2376002-2376082 1.6e-05 10_[+3]_62 chrX:2375448-2375528 1.6e-05 36_[+3]_36 chrX:2392448-2392528 1.6e-05 7_[+3]_65 chrX:2382122-2382202 1.6e-05 31_[+3]_41 chr7:27881950-27882030 1.6e-05 3_[+3]_69 chr17:47100152-47100232 1.6e-05 19_[+3]_53 chr10:1015818-1015898 1.6e-05 18_[+3]_54 chr17:53802923-53803003 1.6e-05 47_[+3]_25 chr16:420604-420684 3.2e-05 14_[+3]_58 chr14:24583640-24583720 3.2e-05 64_[+3]_8 chrX:153606922-153607002 3.2e-05 31_[+3]_41 chr5:159243498-159243578 3.2e-05 13_[+3]_59 chr19:8767057-8767137 3.2e-05 18_[+3]_54 chr16:86825046-86825126 3.2e-05 33_[+3]_39 chr16:47618858-47618938 3.2e-05 18_[+3]_54 chr20:43324511-43324591 3.2e-05 11_[+3]_61 chr7:150974269-150974349 3.2e-05 35_[+3]_37 chr17:39662460-39662540 3.2e-05 9_[+3]_63 chr2:46727544-46727624 5e-05 [+3]_72 chrX:2393621-2393701 5e-05 59_[+3]_13 chrX:2393419-2393499 5e-05 69_[+3]_3 chrX:2397287-2397367 5e-05 48_[+3]_24 chrX:2387450-2387530 5e-05 43_[+3]_29 chr8:103251199-103251279 8.2e-05 19_[+3]_53 chr10:75255813-75255893 8.2e-05 4_[+3]_68 chr8:1845591-1845671 8.2e-05 47_[+3]_25 chr18:19748439-19748519 8.2e-05 33_[+3]_39 chr4:56586546-56586626 8.2e-05 22_[+3]_50 chr1:36840259-36840339 9.6e-05 57_[+3]_15 chr1:151628070-151628150 9.6e-05 23_[+3]_49 chr2:236299147-236299227 9.6e-05 21_[+3]_51 chr3:67068677-67068757 9.6e-05 6_[+3]_66 chr2:100895447-100895527 0.00011 5_[+3]_67 chr6:53480600-53480680 0.00011 7_[+3]_65 chr2:201676017-201676097 0.00011 60_[+3]_12 chr1:7177768-7177848 0.00011 6_[+3]_66 chr19:46012538-46012618 0.00013 32_[+3]_40 chr3:183250809-183250889 0.00013 51_[+3]_21 chrX:48350855-48350935 0.00013 68_[+3]_4 chr19:31389831-31389911 0.00013 29_[+3]_43 chr19:38646286-38646366 0.00013 2_[+3]_70 chr6:90487213-90487293 0.00016 12_[+3]_60 chr1:31502506-31502586 0.00016 15_[+3]_57 chr16:87120351-87120431 0.00016 1_[+3]_71 chr6:158998710-158998790 0.00016 29_[+3]_43 chr1:153950450-153950530 0.00016 8_[+3]_64 chr21:33788404-33788484 0.00016 20_[+3]_52 chr17:45335111-45335191 0.00016 3_[+3]_69 chr5:134582730-134582810 0.0002 51_[+3]_21 chr9:119200071-119200151 0.0002 17_[+3]_55 chr8:91237211-91237291 0.00021 1_[+3]_71 chr6:17972953-17973033 0.00021 5_[+3]_67 chr7:26155397-26155477 0.00021 2_[+3]_70 chr3:154914496-154914576 0.00023 50_[+3]_22 chr6:28370111-28370191 0.00023 37_[+3]_35 chr20:47444644-47444724 0.00023 [+3]_72 chr14:105506028-10550610 0.00023 23_[+3]_49 chr4:109517537-109517617 0.00025 41_[+3]_31 chr4:48782709-48782789 0.00028 59_[+3]_13 chr12:48177405-48177485 0.00032 46_[+3]_26 chr2:75904581-75904661 0.00032 60_[+3]_12 chr21:33786192-33786272 0.00032 25_[+3]_47 chr7:6746822-6746902 0.00033 43_[+3]_29 chr12:8085959-8086039 0.00033 19_[+3]_53 chr6:4380323-4380403 0.00033 50_[+3]_22 chr19:44288723-44288803 0.00037 [+3]_72 chr16:21272528-21272608 0.00037 25_[+3]_47 chr16:58060147-58060227 0.00037 28_[+3]_44 chr2:37789559-37789639 0.00038 56_[+3]_16 chr21:38318317-38318397 0.00038 15_[+3]_57 chr4:139572216-139572296 0.0004 17_[+3]_55 chr17:43176724-43176804 0.0004 [+3]_72 chr10:6281355-6281435 0.00043 48_[+3]_24 chr5:134585488-134585568 0.00043 6_[+3]_66 chr15:43398237-43398317 0.00049 57_[+3]_15 chrX:67804105-67804185 0.00049 66_[+3]_6 chr19:38527900-38527980 0.0005 6_[+3]_66 chr7:129712174-129712254 0.00054 26_[+3]_46 chr19:56159340-56159420 0.00054 17_[+3]_55 chr12:48746309-48746389 0.00055 26_[+3]_46 chr13:50783097-50783177 0.00069 4_[+3]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YWAGGGAY MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YWAGGGAY width=8 seqs=81 chrX:2376002-2376082 ( 11) TAAGGGAC 1 chrX:2375448-2375528 ( 37) TAAGGGAC 1 chrX:2392448-2392528 ( 8) TAAGGGAC 1 chrX:2382122-2382202 ( 32) TAAGGGAC 1 chr7:27881950-27882030 ( 4) TAAGGGAC 1 chr17:47100152-47100232 ( 20) TAAGGGAC 1 chr10:1015818-1015898 ( 19) TAAGGGAC 1 chr17:53802923-53803003 ( 48) TAAGGGAC 1 chr16:420604-420684 ( 15) TTAGGGAC 1 chr14:24583640-24583720 ( 65) TTAGGGAC 1 chrX:153606922-153607002 ( 32) TTAGGGAC 1 chr5:159243498-159243578 ( 14) TTAGGGAC 1 chr19:8767057-8767137 ( 19) TTAGGGAC 1 chr16:86825046-86825126 ( 34) TTAGGGAC 1 chr16:47618858-47618938 ( 19) TTAGGGAC 1 chr20:43324511-43324591 ( 12) TTAGGGAC 1 chr7:150974269-150974349 ( 36) TTAGGGAC 1 chr17:39662460-39662540 ( 10) TTAGGGAC 1 chr2:46727544-46727624 ( 1) CAAGGGAC 1 chrX:2393621-2393701 ( 60) CAAGGGAC 1 chrX:2393419-2393499 ( 70) CAAGGGAC 1 chrX:2397287-2397367 ( 49) CAAGGGAC 1 chrX:2387450-2387530 ( 44) CAAGGGAC 1 chr8:103251199-103251279 ( 20) CTAGGGAC 1 chr10:75255813-75255893 ( 5) CTAGGGAC 1 chr8:1845591-1845671 ( 48) TAAGGGAT 1 chr18:19748439-19748519 ( 34) CTAGGGAC 1 chr4:56586546-56586626 ( 23) CTAGGGAC 1 chr1:36840259-36840339 ( 58) TTAGGGAT 1 chr1:151628070-151628150 ( 24) TTAGGGAT 1 chr2:236299147-236299227 ( 22) TTAGGGAT 1 chr3:67068677-67068757 ( 7) TTAGGGAT 1 chr2:100895447-100895527 ( 6) TAAGGGAG 1 chr6:53480600-53480680 ( 8) TAAGGGAG 1 chr2:201676017-201676097 ( 61) TAAGGGAG 1 chr1:7177768-7177848 ( 7) TAAGGGAG 1 chr19:46012538-46012618 ( 33) TTAGGGAG 1 chr3:183250809-183250889 ( 52) TTAGGGAG 1 chrX:48350855-48350935 ( 69) TTAGGGAG 1 chr19:31389831-31389911 ( 30) TTAGGGAG 1 chr19:38646286-38646366 ( 3) TTAGGGAG 1 chr6:90487213-90487293 ( 13) TCAGGGAC 1 chr1:31502506-31502586 ( 16) CAAGGGAT 1 chr16:87120351-87120431 ( 2) CAAGGGAT 1 chr6:158998710-158998790 ( 30) CAAGGGAT 1 chr1:153950450-153950530 ( 9) CAAGGGAT 1 chr21:33788404-33788484 ( 21) CAAGGGAT 1 chr17:45335111-45335191 ( 4) CAAGGGAT 1 chr5:134582730-134582810 ( 52) CAAGGGAG 1 chr9:119200071-119200151 ( 18) CAAGGGAG 1 chr8:91237211-91237291 ( 2) CTAGGGAG 1 chr6:17972953-17973033 ( 6) CTAGGGAG 1 chr7:26155397-26155477 ( 3) CTAGGGAG 1 chr3:154914496-154914576 ( 51) CCAGGGAC 1 chr6:28370111-28370191 ( 38) CCAGGGAC 1 chr20:47444644-47444724 ( 1) CCAGGGAC 1 chr14:105506028-10550610 ( 24) CCAGGGAC 1 chr4:109517537-109517617 ( 42) TCAGGGAT 1 chr4:48782709-48782789 ( 60) AAAGGGAC 1 chr12:48177405-48177485 ( 47) CCAGGGAT 1 chr2:75904581-75904661 ( 61) CCAGGGAT 1 chr21:33786192-33786272 ( 26) CCAGGGAT 1 chr7:6746822-6746902 ( 44) TAAGGGAA 1 chr12:8085959-8086039 ( 20) TAAGGGAA 1 chr6:4380323-4380403 ( 51) TAAGGGAA 1 chr19:44288723-44288803 ( 1) CCAGGGAG 1 chr16:21272528-21272608 ( 26) CCAGGGAG 1 chr16:58060147-58060227 ( 29) CCAGGGAG 1 chr2:37789559-37789639 ( 57) AAAGGGAT 1 chr21:38318317-38318397 ( 16) AAAGGGAT 1 chr4:139572216-139572296 ( 18) ATAGGGAT 1 chr17:43176724-43176804 ( 1) ATAGGGAT 1 chr10:6281355-6281435 ( 49) AAAGGGAG 1 chr5:134585488-134585568 ( 7) CAAGGGAA 1 chr15:43398237-43398317 ( 58) ACAGGGAC 1 chrX:67804105-67804185 ( 67) ACAGGGAC 1 chr19:38527900-38527980 ( 7) TCAGGGAA 1 chr7:129712174-129712254 ( 27) TAAGGGGC 1 chr19:56159340-56159420 ( 18) TAAGGGGC 1 chr12:48746309-48746389 ( 27) TTAGGGGC 1 chr13:50783097-50783177 ( 5) TTAGGGGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YWAGGGAY MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.76687 E= 1.7e-030 -132 58 -1298 116 85 -47 -1298 67 202 -1298 -1298 -1298 -1298 -1298 191 -1298 -1298 -1298 191 -1298 -1298 -1298 191 -1298 195 -1298 -242 -1298 -199 87 -26 9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YWAGGGAY MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 81 E= 1.7e-030 0.098765 0.382716 0.000000 0.518519 0.444444 0.185185 0.000000 0.370370 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.950617 0.000000 0.049383 0.000000 0.061728 0.469136 0.222222 0.246914 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YWAGGGAY MEME-3 regular expression -------------------------------------------------------------------------------- [TC][AT]AGGGA[CTG] -------------------------------------------------------------------------------- Time 12.39 secs. ******************************************************************************** ******************************************************************************** MOTIF ACTGAAGA MEME-4 width = 8 sites = 19 llr = 189 E-value = 5.2e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACTGAAGA MEME-4 Description -------------------------------------------------------------------------------- Simplified A a:1:aa:9 pos.-specific C :a:1:::1 probability G :::8::a1 matrix T ::91:::: bits 2.1 * ** 1.9 *** *** 1.7 *** *** 1.5 *** **** Relative 1.3 *** **** Entropy 1.1 ******** (14.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACTGAAGA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTGAAGA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:2376002-2376082 34 1.53e-05 CAGTGTGCAC ACTGAAGA CGTTCCCTAA chrX:2375448-2375528 60 1.53e-05 CCATTTACAC ACTGAAGA CATTCCCTAA chr6:110858579-110858659 70 1.53e-05 ACTATGAGAG ACTGAAGA AAA chrX:2386902-2386982 62 1.53e-05 GCCGTTGCAC ACTGAAGA CGTTCCCTAA chrX:2392448-2392528 69 1.53e-05 AAAAGACGGC ACTGAAGA CGCT chrX:2370560-2370640 51 1.53e-05 CCATGTACAC ACTGAAGA TGTTCCCTAA chrX:2393621-2393701 33 1.53e-05 GATCACACTC ACTGAAGA CGTTCCCTAA chrX:2369927-2370007 11 1.53e-05 AAAAGACAAC ACTGAAGA CGTTCCCTAG chrX:2382122-2382202 55 1.53e-05 CCATGTACGC ACTGAAGA CGCTCCCTAA chrX:2393419-2393499 42 1.53e-05 CCATGTACAC ACTGAAGA CAGTCCCTAA chrX:2397287-2397367 72 1.53e-05 CACTGTGCAC ACTGAAGA T chr6:27727744-27727824 53 1.53e-05 AATTCAAAGA ACTGAAGA AGGAAGTTTC chrX:2387450-2387530 67 1.53e-05 CCCTATACAC ACTGAAGA CGCTCC chr4:74573748-74573828 38 3.00e-05 gCTTTATAGC ACTCAAGA TAAGCAAAGT chr16:11709675-11709755 26 3.00e-05 taatgggatg actcaaga tgactcagtg chr12:10562213-10562293 7 4.34e-05 AACTGC ACTTAAGA AGCTATAAGT chr10:75255813-75255893 25 5.93e-05 GGGCAAAATT ACTGAAGC TAGGAGAGAA chr2:64253000-64253080 44 9.19e-05 CCAAGACACA ACAGAAGA GCACATGAAA chr6:4380323-4380403 1 9.19e-05 . ACTGAAGG TAAGGGAATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTGAAGA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:2376002-2376082 1.5e-05 33_[+4]_39 chrX:2375448-2375528 1.5e-05 59_[+4]_13 chr6:110858579-110858659 1.5e-05 69_[+4]_3 chrX:2386902-2386982 1.5e-05 61_[+4]_11 chrX:2392448-2392528 1.5e-05 68_[+4]_4 chrX:2370560-2370640 1.5e-05 50_[+4]_22 chrX:2393621-2393701 1.5e-05 32_[+4]_40 chrX:2369927-2370007 1.5e-05 10_[+4]_62 chrX:2382122-2382202 1.5e-05 54_[+4]_18 chrX:2393419-2393499 1.5e-05 41_[+4]_31 chrX:2397287-2397367 1.5e-05 71_[+4]_1 chr6:27727744-27727824 1.5e-05 52_[+4]_20 chrX:2387450-2387530 1.5e-05 66_[+4]_6 chr4:74573748-74573828 3e-05 37_[+4]_35 chr16:11709675-11709755 3e-05 25_[+4]_47 chr12:10562213-10562293 4.3e-05 6_[+4]_66 chr10:75255813-75255893 5.9e-05 24_[+4]_48 chr2:64253000-64253080 9.2e-05 43_[+4]_29 chr6:4380323-4380403 9.2e-05 [+4]_72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTGAAGA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACTGAAGA width=8 seqs=19 chrX:2376002-2376082 ( 34) ACTGAAGA 1 chrX:2375448-2375528 ( 60) ACTGAAGA 1 chr6:110858579-110858659 ( 70) ACTGAAGA 1 chrX:2386902-2386982 ( 62) ACTGAAGA 1 chrX:2392448-2392528 ( 69) ACTGAAGA 1 chrX:2370560-2370640 ( 51) ACTGAAGA 1 chrX:2393621-2393701 ( 33) ACTGAAGA 1 chrX:2369927-2370007 ( 11) ACTGAAGA 1 chrX:2382122-2382202 ( 55) ACTGAAGA 1 chrX:2393419-2393499 ( 42) ACTGAAGA 1 chrX:2397287-2397367 ( 72) ACTGAAGA 1 chr6:27727744-27727824 ( 53) ACTGAAGA 1 chrX:2387450-2387530 ( 67) ACTGAAGA 1 chr4:74573748-74573828 ( 38) ACTCAAGA 1 chr16:11709675-11709755 ( 26) ACTCAAGA 1 chr12:10562213-10562293 ( 7) ACTTAAGA 1 chr10:75255813-75255893 ( 25) ACTGAAGC 1 chr2:64253000-64253080 ( 44) ACAGAAGA 1 chr6:4380323-4380403 ( 1) ACTGAAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTGAAGA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1012 E= 5.2e-005 202 -1089 -1089 -1089 -1089 196 -1089 -1089 -222 -1089 -1089 203 -1089 -128 167 -214 202 -1089 -1089 -1089 202 -1089 -1089 -1089 -1089 -1089 191 -1089 186 -228 -233 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTGAAGA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 5.2e-005 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.052632 0.000000 0.000000 0.947368 0.000000 0.105263 0.842105 0.052632 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.894737 0.052632 0.052632 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTGAAGA MEME-4 regular expression -------------------------------------------------------------------------------- ACTGAAGA -------------------------------------------------------------------------------- Time 15.81 secs. ******************************************************************************** ******************************************************************************** MOTIF RTGABTCA MEME-5 width = 8 sites = 28 llr = 248 E-value = 1.4e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif RTGABTCA MEME-5 Description -------------------------------------------------------------------------------- Simplified A 3::a:::a pos.-specific C 2:::4:a: probability G 5:a:4::: matrix T 1a::2a:: bits 2.1 * * * * 1.9 *** *** 1.7 *** *** 1.5 *** *** Relative 1.3 *** *** Entropy 1.1 *** *** (12.8 bits) 0.8 *** *** 0.6 *** *** 0.4 ******* 0.2 ******** 0.0 -------- Multilevel GTGACTCA consensus A G sequence C T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGABTCA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:37071706-37071786 48 1.50e-05 TATGTTCACG GTGACTCA GAAGAGATGA chr19:44288723-44288803 30 1.50e-05 GGAGGGCGAG GTGACTCA GGGCCTCAGG chr6:14744348-14744428 44 1.50e-05 GACTCACTTG GTGACTCA GTGCTTGTCA chr11:86454569-86454649 46 1.50e-05 TCACAGGTTG GTGACTCA CTGGCTTGAG chr13:101045126-10104520 40 1.50e-05 ACCCagggaa gtgactca cccagggaag chr10:21625975-21626055 43 1.50e-05 TTCCCACCCG GTGACTCA GGCTGACTCA chr11:66185708-66185788 42 1.50e-05 AGAGAGTGGG GTGACTCA GCCAGGCCAG chr16:1052862-1052942 51 1.50e-05 ACGTTCGGGG GTGACTCA TCCAGGCCAC chr4:72978412-72978492 50 3.05e-05 TGTGACATCT GTGAGTCA TGTGTCTCAT chr2:27544094-27544174 57 3.05e-05 ACGTAGCCAG GTGAGTCA TACAGGCTGA chr16:3072436-3072516 2 3.05e-05 A GTGAGTCA GCCAGCCGCG chr7:99160636-99160716 28 4.44e-05 ATTTGAAGGC ATGACTCA CTGTGAGTAC chr19:48829365-48829445 26 4.44e-05 GAGTCACCAG ATGACTCA CCAGGTCCCC chr3:39188641-39188721 33 5.80e-05 CACAGGCTGG GTGATTCA CACAGCTTGC chr5:134582730-134582810 29 5.80e-05 TTGATGATTC GTGATTCA TGCTTGTGAG chr5:56989067-56989147 44 8.69e-05 CCAGGCAAGC ATGAGTCA TTCCACATTG chr8:11711607-11711687 23 8.69e-05 GCACTGGCTC ATGAGTCA CAAGCCAGTG chr14:23005989-23006069 30 8.69e-05 AGAAACAGGA ATGAGTCA GGCGTGAGTC chr2:10423590-10423670 12 8.69e-05 CACCCCAACC CTGACTCA CCCTGACTCA chr1:78227858-78227938 64 1.02e-04 GGACACCCAG CTGAGTCA TACTGATTC chr1:52035586-52035666 27 1.02e-04 aatcaggagg ctgagtca taaggaggtg chr1:42335958-42336038 3 1.02e-04 CA CTGAGTCA TCCATTCAAC chr10:3848151-3848231 25 1.14e-04 CTAATTTAAA ATGATTCA TCCGCGTGAG chr2:234259534-234259614 24 1.14e-04 GTCGTTAGAG ATGATTCA TAGTGTGACT chr16:79692285-79692365 36 1.28e-04 ACGGACACAG CTGATTCA CCAGGGTGAC chr8:27474714-27474794 34 1.28e-04 AGTCACTGGG CTGATTCA TAGAGAATGC chr21:36089815-36089895 19 1.41e-04 GTAGAAACTA TTGACTCA AAAGAGTTTC chr2:173118072-173118152 23 1.54e-04 TGACAGACCC TTGAGTca cacacacaca -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGABTCA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:37071706-37071786 1.5e-05 47_[+5]_25 chr19:44288723-44288803 1.5e-05 29_[+5]_43 chr6:14744348-14744428 1.5e-05 43_[+5]_29 chr11:86454569-86454649 1.5e-05 45_[+5]_27 chr13:101045126-10104520 1.5e-05 39_[+5]_33 chr10:21625975-21626055 1.5e-05 42_[+5]_30 chr11:66185708-66185788 1.5e-05 41_[+5]_31 chr16:1052862-1052942 1.5e-05 50_[+5]_22 chr4:72978412-72978492 3.1e-05 49_[+5]_23 chr2:27544094-27544174 3.1e-05 56_[+5]_16 chr16:3072436-3072516 3.1e-05 1_[+5]_71 chr7:99160636-99160716 4.4e-05 27_[+5]_45 chr19:48829365-48829445 4.4e-05 25_[+5]_47 chr3:39188641-39188721 5.8e-05 32_[+5]_40 chr5:134582730-134582810 5.8e-05 28_[+5]_44 chr5:56989067-56989147 8.7e-05 43_[+5]_29 chr8:11711607-11711687 8.7e-05 22_[+5]_50 chr14:23005989-23006069 8.7e-05 29_[+5]_43 chr2:10423590-10423670 8.7e-05 11_[+5]_61 chr1:78227858-78227938 0.0001 63_[+5]_9 chr1:52035586-52035666 0.0001 26_[+5]_46 chr1:42335958-42336038 0.0001 2_[+5]_70 chr10:3848151-3848231 0.00011 24_[+5]_48 chr2:234259534-234259614 0.00011 23_[+5]_49 chr16:79692285-79692365 0.00013 35_[+5]_37 chr8:27474714-27474794 0.00013 33_[+5]_39 chr21:36089815-36089895 0.00014 18_[+5]_54 chr2:173118072-173118152 0.00015 22_[+5]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGABTCA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RTGABTCA width=8 seqs=28 chr7:37071706-37071786 ( 48) GTGACTCA 1 chr19:44288723-44288803 ( 30) GTGACTCA 1 chr6:14744348-14744428 ( 44) GTGACTCA 1 chr11:86454569-86454649 ( 46) GTGACTCA 1 chr13:101045126-10104520 ( 40) GTGACTCA 1 chr10:21625975-21626055 ( 43) GTGACTCA 1 chr11:66185708-66185788 ( 42) GTGACTCA 1 chr16:1052862-1052942 ( 51) GTGACTCA 1 chr4:72978412-72978492 ( 50) GTGAGTCA 1 chr2:27544094-27544174 ( 57) GTGAGTCA 1 chr16:3072436-3072516 ( 2) GTGAGTCA 1 chr7:99160636-99160716 ( 28) ATGACTCA 1 chr19:48829365-48829445 ( 26) ATGACTCA 1 chr3:39188641-39188721 ( 33) GTGATTCA 1 chr5:134582730-134582810 ( 29) GTGATTCA 1 chr5:56989067-56989147 ( 44) ATGAGTCA 1 chr8:11711607-11711687 ( 23) ATGAGTCA 1 chr14:23005989-23006069 ( 30) ATGAGTCA 1 chr2:10423590-10423670 ( 12) CTGACTCA 1 chr1:78227858-78227938 ( 64) CTGAGTCA 1 chr1:52035586-52035666 ( 27) CTGAGTCA 1 chr1:42335958-42336038 ( 3) CTGAGTCA 1 chr10:3848151-3848231 ( 25) ATGATTCA 1 chr2:234259534-234259614 ( 24) ATGATTCA 1 chr16:79692285-79692365 ( 36) CTGATTCA 1 chr8:27474714-27474794 ( 34) CTGATTCA 1 chr21:36089815-36089895 ( 19) TTGACTCA 1 chr2:173118072-173118152 ( 23) TTGAGTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGABTCA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.5697 E= 1.4e-004 2 -26 81 -170 -1145 -1145 -1145 211 -1145 -1145 191 -1145 202 -1145 -1145 -1145 -1145 74 43 -12 -1145 -1145 -1145 211 -1145 196 -1145 -1145 202 -1145 -1145 -1145 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGABTCA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 1.4e-004 0.250000 0.214286 0.464286 0.071429 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.428571 0.357143 0.214286 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGABTCA MEME-5 regular expression -------------------------------------------------------------------------------- [GAC]TGA[CGT]TCA -------------------------------------------------------------------------------- Time 19.21 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:87329051-87329131 1.84e-02 80 chr16:10970915-10970995 8.58e-01 80 chr6:4380323-4380403 1.76e-03 [+4(9.19e-05)]_72 chr17:53802923-53803003 1.60e-02 4_[+3(3.20e-05)]_35_[+3(1.65e-05)]_\ 25 chr7:106731067-106731147 2.42e-02 80 chr4:79502999-79503079 2.73e-01 80 chr11:8625659-8625739 1.39e-01 80 chrX:2387450-2387530 7.28e-05 16_[+4(1.53e-05)]_3_[+2(5.75e-05)]_\ 8_[+3(5.01e-05)]_15_[+4(1.53e-05)]_6 chr19:38527900-38527980 1.14e-01 80 chr12:10562213-10562293 3.43e-02 6_[+4(4.34e-05)]_66 chr17:39662460-39662540 1.59e-02 [+3(8.22e-05)]_1_[+3(3.20e-05)]_63 chr1:26333396-26333476 1.52e-01 9_[+2(2.79e-05)]_63 chr6:27727744-27727824 6.43e-03 52_[+4(1.53e-05)]_20 chr19:38646286-38646366 7.66e-02 80 chrX:2397287-2397367 7.27e-06 20_[+4(1.53e-05)]_3_[+2(1.45e-05)]_\ 9_[+3(5.01e-05)]_15_[+4(1.53e-05)]_1 chr15:63654668-63654748 5.43e-01 80 chr17:45335111-45335191 3.13e-02 80 chrX:9281415-9281495 1.60e-01 80 chr7:150974269-150974349 1.31e-02 35_[+3(3.20e-05)]_37 chr10:104953117-10495319 4.13e-01 80 chr1:200375589-200375669 2.07e-01 80 chr7:26155397-26155477 4.34e-02 80 chr20:47463118-47463198 3.25e-01 80 chr10:120851694-12085177 4.28e-01 80 chr1:9749381-9749461 9.90e-01 80 chr12:8085959-8086039 5.48e-03 51_[+3(8.22e-05)]_21 chr10:71616669-71616749 8.28e-03 80 chr21:33788404-33788484 3.06e-02 80 chr8:23332933-23333013 9.23e-02 80 chr17:21792990-21793070 2.98e-01 80 chr18:32925797-32925877 3.34e-01 80 chr20:43324511-43324591 1.43e-02 11_[+3(3.20e-05)]_61 chr2:134877365-134877445 4.91e-01 80 chr1:7177768-7177848 1.61e-02 80 chr3:67068677-67068757 1.30e-02 6_[+3(9.62e-05)]_66 chr21:35123601-35123681 3.30e-01 80 chr21:36089815-36089895 9.29e-05 64_[+2(4.19e-05)]_8 chr11:4167365-4167445 3.81e-01 80 chr17:30228080-30228160 2.62e-01 80 chr10:1015818-1015898 4.01e-02 18_[+3(1.65e-05)]_37_[+3(5.01e-05)]_\ 9 chr21:33786192-33786272 1.07e-01 80 chr16:47618858-47618938 8.07e-03 18_[+3(3.20e-05)]_54 chr16:86825046-86825126 1.64e-03 24_[+2(2.79e-05)]_1_[+3(3.20e-05)]_\ 39 chr4:122077259-122077339 2.68e-03 8_[+1(2.95e-05)]_64 chr1:236517849-236517929 7.65e-02 51_[+2(4.19e-05)]_21 chr14:105506028-10550610 8.35e-02 80 chr2:64253000-64253080 1.76e-01 43_[+4(9.19e-05)]_29 chr2:201676017-201676097 9.87e-02 80 chr16:85063158-85063238 1.09e-03 52_[+1(4.31e-05)]_20 chr5:141532115-141532195 1.35e-02 64_[+2(4.19e-05)]_8 chr11:69453774-69453854 2.64e-01 47_[+2(8.68e-05)]_25 chr5:88692495-88692575 9.16e-01 80 chr19:5716440-5716520 1.99e-04 60_[+1(2.95e-05)]_[+2(4.19e-05)]_4 chr1:153950450-153950530 3.09e-02 80 chr22:30821661-30821741 9.26e-01 80 chr2:217747937-217748017 8.25e-01 80 chr11:47627605-47627685 2.87e-01 80 chr20:48330570-48330650 8.50e-01 80 chr16:58060147-58060227 4.96e-01 80 chr19:8767057-8767137 1.00e-01 18_[+3(3.20e-05)]_54 chr5:159243498-159243578 1.03e-01 13_[+3(3.20e-05)]_59 chr17:55362461-55362541 5.89e-03 80 chr1:27898752-27898832 3.59e-01 80 chr20:47444644-47444724 1.30e-01 80 chr9:34379679-34379759 7.75e-01 80 chr13:52548708-52548788 1.12e-01 51_[+2(8.68e-05)]_21 chr11:110045044-11004512 1.87e-01 80 chr2:33359993-33360073 2.75e-02 50_[+2(4.19e-05)]_22 chr6:32753796-32753876 1.92e-01 80 chr4:56586546-56586626 2.18e-03 22_[+3(8.22e-05)]_50 chr2:45006070-45006150 2.44e-01 80 chr11:72153160-72153240 7.22e-01 80 chr6:28370111-28370191 1.85e-02 80 chr19:6088049-6088129 1.63e-04 24_[+5(3.05e-05)]_48 chr9:99620301-99620381 8.51e-01 80 chr17:35736134-35736214 6.73e-01 80 chr17:47100152-47100232 4.36e-03 19_[+3(1.65e-05)]_44_[+2(7.12e-05)]_\ 1 chr6:90528743-90528823 3.54e-01 80 chr2:61034511-61034591 2.42e-02 80 chr19:18439654-18439734 1.31e-01 80 chr18:19748439-19748519 2.47e-01 33_[+3(8.22e-05)]_39 chr8:134581231-134581311 5.27e-02 66_[+2(1.45e-05)]_6 chr2:75904581-75904661 2.88e-01 80 chr2:61034280-61034360 7.42e-01 80 chr17:55417878-55417958 7.06e-01 80 chr16:11709675-11709755 2.30e-05 25_[+4(3.00e-05)]_[+1(8.67e-05)]_39 chr7:29789728-29789808 1.08e-01 80 chr12:48746309-48746389 1.18e-02 70_[+2(7.12e-05)]_2 chrX:2393419-2393499 6.00e-06 2_[+2(1.45e-05)]_8_[+3(5.01e-05)]_\ 15_[+4(1.53e-05)]_3_[+2(1.45e-05)]_9_[+3(5.01e-05)]_3 chr21:46222655-46222735 3.47e-01 80 chrX:153606922-153607002 2.44e-02 31_[+3(3.20e-05)]_41 chr7:27881950-27882030 4.21e-02 3_[+3(1.65e-05)]_69 chr2:236299147-236299227 1.22e-02 21_[+3(9.62e-05)]_51 chr1:145575952-145576032 8.72e-01 80 chr6:111585190-111585270 2.14e-02 80 chr15:73979242-73979322 7.19e-01 80 chr11:64794802-64794882 1.79e-01 80 chr17:76971118-76971198 2.92e-01 80 chr19:14550923-14551003 2.34e-02 47_[+2(7.12e-05)]_25 chr17:62062598-62062678 4.89e-03 35_[+1(4.31e-05)]_37 chrX:2382122-2382202 3.35e-06 4_[+4(1.53e-05)]_3_[+2(1.45e-05)]_8_\ [+3(1.65e-05)]_15_[+4(1.53e-05)]_3_[+2(1.45e-05)]_7 chrX:2369927-2370007 2.40e-04 10_[+4(1.53e-05)]_3_[+2(5.75e-05)]_\ 42_[+2(1.45e-05)]_1 chr19:31389831-31389911 4.45e-03 80 chrX:2393621-2393701 1.05e-05 1_[+2(5.75e-05)]_23_[+4(1.53e-05)]_\ 3_[+2(1.45e-05)]_8_[+3(5.01e-05)]_13 chr5:134585488-134585568 1.70e-02 80 chr1:221861171-221861251 7.59e-02 54_[+2(1.45e-05)]_18 chrX:2370560-2370640 4.29e-04 50_[+4(1.53e-05)]_3_[+2(1.45e-05)]_\ 11 chr5:415662-415742 6.60e-01 80 chr6:17972953-17973033 2.90e-02 80 chr8:80681011-80681091 7.37e-01 80 chr17:43176724-43176804 3.11e-03 61_[+2(2.79e-05)]_11 chr2:85788938-85789018 2.53e-01 80 chr14:24583640-24583720 4.51e-02 64_[+3(3.20e-05)]_8 chr11:57171298-57171378 2.97e-01 80 chr11:76494161-76494241 1.88e-01 80 chr12:122331173-12233125 2.24e-01 80 chr17:76164534-76164614 2.69e-01 80 chr6:158998710-158998790 5.60e-05 14_[+5(1.50e-05)]_58 chr13:50783097-50783177 1.56e-02 80 chr5:133448034-133448114 2.86e-02 53_[+2(7.12e-05)]_19 chr19:56159340-56159420 2.04e-01 80 chr21:17116066-17116146 6.34e-01 80 chr16:69466098-69466178 1.15e-03 80 chr2:10423590-10423670 2.65e-03 12_[+1(2.95e-05)]_2_[+1(2.95e-05)]_\ 50 chr6:53480600-53480680 2.68e-02 80 chrX:15598114-15598194 4.19e-04 59_[+1(1.50e-05)]_13 chr4:139572216-139572296 3.29e-03 80 chr14:23005989-23006069 1.39e-04 30_[+1(7.17e-05)]_3_[+1(1.50e-05)]_\ 31 chr7:150130966-150131046 6.37e-03 80 chr6:44174339-44174419 8.64e-02 80 chr1:151628070-151628150 9.81e-02 23_[+3(9.62e-05)]_49 chr8:1845591-1845671 2.19e-01 47_[+3(8.22e-05)]_25 chr11:62369530-62369610 3.72e-01 80 chr16:21272528-21272608 4.39e-01 80 chr2:173118072-173118152 1.22e-03 23_[+1(1.50e-05)]_35_[+1(1.50e-05)]_\ 6 chrX:2392448-2392528 3.35e-06 7_[+3(1.65e-05)]_15_[+4(1.53e-05)]_\ 3_[+2(1.45e-05)]_19_[+4(1.53e-05)]_4 chr1:90359981-90360061 2.02e-02 80 chr1:36840259-36840339 1.49e-01 57_[+3(9.62e-05)]_15 chr11:123986030-12398611 6.46e-02 32_[+2(7.12e-05)]_40 chrX:2386902-2386982 4.12e-04 12_[+4(1.53e-05)]_41_[+4(1.53e-05)]_\ 3_[+2(1.45e-05)] chr19:925588-925668 9.76e-01 80 chr4:74573748-74573828 1.20e-05 37_[+4(3.00e-05)]_27_[+1(1.50e-05)] chr3:42888741-42888821 2.70e-01 80 chr2:100895447-100895527 3.56e-04 80 chr12:95348112-95348192 3.02e-02 80 chrX:67804105-67804185 1.09e-02 80 chr14:55575131-55575211 5.17e-02 42_[+2(4.19e-05)]_30 chr7:1098685-1098765 2.92e-01 80 chrX:48350855-48350935 1.22e-06 4_[+1(1.50e-05)]_68 chr16:3072436-3072516 1.92e-03 1_[+5(3.05e-05)]_28_[+1(2.95e-05)]_\ 35 chr8:91237211-91237291 1.09e-01 80 chr15:40559145-40559225 6.63e-04 54_[+1(1.50e-05)]_18 chr17:75368173-75368253 9.92e-01 80 chr11:65430490-65430570 9.99e-01 80 chr1:92182003-92182083 4.96e-02 54_[+2(4.19e-05)]_18 chr19:29017121-29017201 1.38e-03 80 chr2:166810249-166810329 1.95e-01 80 chr2:134877570-134877650 5.83e-01 80 chr15:43398237-43398317 3.64e-01 80 chr11:65247111-65247191 4.89e-01 80 chr6:110858579-110858659 8.62e-04 44_[+1(9.98e-05)]_17_[+4(1.53e-05)]_\ 3 chr3:127309486-127309566 9.71e-01 80 chr1:42335958-42336038 1.48e-04 3_[+1(4.31e-05)]_32_[+1(1.50e-05)]_\ 29 chr1:151689398-151689478 1.04e-02 80 chr10:75255813-75255893 7.90e-03 4_[+3(8.22e-05)]_12_[+4(5.93e-05)]_\ 48 chr12:93713266-93713346 8.66e-02 80 chr16:87120351-87120431 7.45e-02 80 chr3:154914496-154914576 1.93e-01 80 chr8:27474714-27474794 8.93e-04 21_[+1(1.50e-05)]_51 chr2:27544094-27544174 2.06e-03 33_[+1(1.50e-05)]_15_[+5(3.05e-05)]_\ 16 chr5:102456679-102456759 1.01e-01 80 chr5:158527484-158527564 6.74e-01 80 chr17:32269572-32269652 9.49e-04 53_[+5(3.05e-05)]_19 chr11:120302975-12030305 3.89e-03 3_[+5(1.50e-05)]_69 chr1:31502506-31502586 3.48e-03 80 chr16:1052862-1052942 1.27e-03 34_[+1(2.95e-05)]_8_[+5(1.50e-05)]_\ 22 chr11:47545265-47545345 8.45e-04 43_[+5(4.44e-05)]_29 chr3:183250809-183250889 1.08e-03 11_[+1(9.98e-05)]_61 chr1:181863859-181863939 2.44e-01 80 chr4:82646380-82646460 2.16e-03 53_[+1(1.50e-05)]_19 chr7:5085253-5085333 1.08e-01 80 chr11:66185708-66185788 1.22e-03 41_[+5(1.50e-05)]_12_[+1(2.95e-05)]_\ 11 chr19:41169946-41170026 5.64e-03 24_[+1(4.31e-05)]_48 chrX:2375448-2375528 1.00e-06 9_[+4(1.53e-05)]_3_[+2(1.45e-05)]_8_\ [+3(1.65e-05)]_15_[+4(1.53e-05)]_3_[+2(1.45e-05)]_2 chr4:72978412-72978492 6.61e-03 17_[+1(4.31e-05)]_3_[+5(3.05e-05)]_\ 13_[+5(3.05e-05)]_23 chr18:3595459-3595539 9.57e-01 80 chr2:46769495-46769575 9.04e-01 80 chr21:38318317-38318397 7.39e-02 80 chr18:19320792-19320872 9.69e-01 80 chr16:420604-420684 7.32e-02 14_[+3(3.20e-05)]_58 chr7:6746822-6746902 3.37e-01 80 chr22:40895302-40895382 2.94e-03 27_[+1(4.31e-05)]_45 chr7:2570022-2570102 2.46e-04 28_[+5(1.50e-05)]_44 chr2:217639952-217640032 1.32e-05 25_[+2(2.79e-05)]_19_[+5(4.44e-05)]_\ 20 chr12:48177405-48177485 1.65e-02 80 chr9:131069635-131069715 1.03e-03 25_[+5(3.05e-05)]_47 chr15:50429619-50429699 4.49e-04 39_[+1(2.95e-05)]_33 chr8:103251199-103251279 1.01e-01 19_[+3(8.22e-05)]_53 chr4:109517537-109517617 1.93e-02 80 chr9:119200071-119200151 1.86e-01 80 chr16:67225916-67225996 2.90e-01 80 chr7:129712174-129712254 2.31e-03 58_[+2(7.12e-05)]_14 chr10:134149192-13414927 6.62e-01 80 chr1:52035586-52035666 8.76e-05 27_[+1(4.31e-05)]_7_[+1(1.50e-05)]_\ 30 chr1:145110669-145110749 5.53e-02 46_[+2(5.75e-05)]_26 chr8:8559253-8559333 7.23e-01 80 chr8:101912798-101912878 2.50e-05 25_[+5(4.44e-05)]_47 chr16:85645921-85646001 1.10e-04 36_[+1(4.31e-05)]_36 chr18:34004936-34005016 1.66e-02 80 chr7:6769204-6769284 3.30e-01 80 chr10:6281355-6281435 1.40e-03 29_[+1(7.17e-05)]_43 chr2:37789559-37789639 1.98e-04 80 chr6:13847128-13847208 7.35e-04 18_[+2(5.75e-05)]_54 chr19:46012538-46012618 7.85e-02 80 chr5:134582730-134582810 5.68e-05 28_[+5(5.80e-05)]_22_[+5(1.50e-05)]_\ 14 chr19:48829365-48829445 7.47e-04 14_[+1(1.50e-05)]_4_[+1(2.95e-05)]_\ 46 chr10:21625975-21626055 5.76e-04 42_[+5(1.50e-05)]_3_[+1(2.95e-05)]_\ 19 chr6:90487213-90487293 9.22e-02 80 chr1:78227858-78227938 2.07e-03 14_[+1(1.50e-05)]_42_[+1(4.31e-05)]_\ 8 chr2:46727544-46727624 5.67e-02 [+3(5.01e-05)]_72 chrX:2376002-2376082 3.35e-06 10_[+3(1.65e-05)]_15_[+4(1.53e-05)]_\ 3_[+2(1.45e-05)]_8_[+3(5.01e-05)]_12 chr2:234259534-234259614 5.56e-04 35_[+5(1.50e-05)]_37 chr6:15246049-15246129 4.59e-01 80 chr19:45414607-45414687 1.85e-04 48_[+1(2.95e-05)]_24 chr3:195823425-195823505 5.24e-02 59_[+2(1.45e-05)]_13 chr2:71970134-71970214 8.96e-04 42_[+5(1.50e-05)]_30 chr8:11711607-11711687 3.58e-04 23_[+1(1.50e-05)]_26_[+1(1.50e-05)]_\ 15 chr13:101045126-10104520 7.67e-05 22_[+5(1.50e-05)]_9_[+5(1.50e-05)]_\ 15_[+5(1.50e-05)]_10 chr11:86454569-86454649 5.81e-04 31_[+1(1.50e-05)]_6_[+5(1.50e-05)]_\ 19_[+1(7.17e-05)] chr7:99160636-99160716 1.87e-04 28_[+1(2.95e-05)]_16_[+1(1.50e-05)]_\ 20 chr5:56989067-56989147 1.66e-04 19_[+1(2.95e-05)]_17_[+1(4.31e-05)]_\ 28 chr10:3848151-3848231 2.67e-03 37_[+5(3.05e-05)]_35 chr6:14744348-14744428 4.43e-04 31_[+5(1.50e-05)]_4_[+5(1.50e-05)]_\ 29 chr7:75115694-75115774 5.18e-01 80 chr5:118399574-118399654 9.44e-01 80 chr4:169373016-169373096 2.87e-03 53_[+1(4.31e-05)]_19 chr2:219260976-219261056 4.67e-02 55_[+2(5.75e-05)]_17 chr16:79692285-79692365 8.39e-04 48_[+5(1.50e-05)]_24 chr1:154357641-154357721 1.11e-02 80 chr7:72349742-72349822 6.33e-02 80 chr19:44288723-44288803 1.94e-05 29_[+5(1.50e-05)]_17_[+5(1.50e-05)]_\ 18 chr11:18547873-18547953 7.05e-02 80 chr7:37071706-37071786 3.97e-04 47_[+5(1.50e-05)]_7_[+1(2.95e-05)]_\ 10 chr8:123695705-123695785 6.83e-04 63_[+5(3.05e-05)]_9 chr21:47608424-47608504 2.13e-03 53_[+1(4.31e-05)]_19 chr3:39188641-39188721 3.93e-03 17_[+1(2.95e-05)]_7_[+5(5.80e-05)]_\ 40 chr14:23340809-23340889 3.14e-01 80 chr4:48782709-48782789 2.84e-01 80 chr17:61040856-61040936 2.36e-03 20_[+5(3.05e-05)]_52 chr7:102004074-102004154 1.26e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n06.farnam.hpc.yale.internal ********************************************************************************