******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/IRF9.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr16:25017165-25017245 1.0000 80 chr12:122682866-12268294 1.0000 80 chr3:151818434-151818514 1.0000 80 chr19:13908952-13909032 1.0000 80 chr3:4946663-4946743 1.0000 80 chr3:142569708-142569788 1.0000 80 chr11:67297060-67297140 1.0000 80 chr2:68989400-68989480 1.0000 80 chr1:150943829-150943909 1.0000 80 chr7:106554632-106554712 1.0000 80 chr3:37066677-37066757 1.0000 80 chr1:230996512-230996592 1.0000 80 chr5:36373671-36373751 1.0000 80 chr1:28572990-28573070 1.0000 80 chr5:140099723-140099803 1.0000 80 chr5:138340511-138340591 1.0000 80 chr12:27702839-27702919 1.0000 80 chr9:115293268-115293348 1.0000 80 chr1:197153457-197153537 1.0000 80 chr15:41982173-41982253 1.0000 80 chr18:29291529-29291609 1.0000 80 chr4:169332904-169332984 1.0000 80 chr7:88518149-88518229 1.0000 80 chr1:150973059-150973139 1.0000 80 chrX:151065776-151065856 1.0000 80 chr1:234762929-234763009 1.0000 80 chr5:142431277-142431357 1.0000 80 chr1:121267294-121267374 1.0000 80 chr21:36312150-36312230 1.0000 80 chr12:60567528-60567608 1.0000 80 chr1:167461281-167461361 1.0000 80 chr10:22013700-22013780 1.0000 80 chr21:46388160-46388240 1.0000 80 chr6:144900236-144900316 1.0000 80 chr15:93345381-93345461 1.0000 80 chr11:93141128-93141208 1.0000 80 chr12:123225109-12322518 1.0000 80 chr5:30101200-30101280 1.0000 80 chr1:31584214-31584294 1.0000 80 chr15:40129810-40129890 1.0000 80 chr1:154997835-154997915 1.0000 80 chr1:110575106-110575186 1.0000 80 chr6:88441669-88441749 1.0000 80 chr20:54824763-54824843 1.0000 80 chr4:8443376-8443456 1.0000 80 chr19:30444434-30444514 1.0000 80 chr15:57263416-57263496 1.0000 80 chr6:15368564-15368644 1.0000 80 chr1:207811991-207812071 1.0000 80 chr5:145061367-145061447 1.0000 80 chr3:20102501-20102581 1.0000 80 chr3:47497463-47497543 1.0000 80 chr6:135410086-135410166 1.0000 80 chr12:131069172-13106925 1.0000 80 chr2:242218985-242219065 1.0000 80 chr11:38788460-38788540 1.0000 80 chr8:37010936-37011016 1.0000 80 chr4:693292-693372 1.0000 80 chr9:135893974-135894054 1.0000 80 chr9:136989004-136989084 1.0000 80 chr17:25739323-25739403 1.0000 80 chr3:4753907-4753987 1.0000 80 chr15:43834122-43834202 1.0000 80 chr6:160522094-160522174 1.0000 80 chr6:20573299-20573379 1.0000 80 chr6:136822795-136822875 1.0000 80 chr1:221490011-221490091 1.0000 80 chr2:175901458-175901538 1.0000 80 chr1:193080861-193080941 1.0000 80 chr10:127093610-12709369 1.0000 80 chr12:48163997-48164077 1.0000 80 chr14:100543189-10054326 1.0000 80 chr2:216484919-216484999 1.0000 80 chr5:145572370-145572450 1.0000 80 chr18:19279648-19279728 1.0000 80 chr2:175010640-175010720 1.0000 80 chr8:16423319-16423399 1.0000 80 chr6:14727485-14727565 1.0000 80 chr7:98771542-98771622 1.0000 80 chr1:100788584-100788664 1.0000 80 chr2:183897062-183897142 1.0000 80 chr2:119880381-119880461 1.0000 80 chr6:53494895-53494975 1.0000 80 chr4:186167772-186167852 1.0000 80 chr1:243376470-243376550 1.0000 80 chr5:118658875-118658955 1.0000 80 chr3:195782795-195782875 1.0000 80 chr17:73077149-73077229 1.0000 80 chr5:121312860-121312940 1.0000 80 chr6:36617765-36617845 1.0000 80 chr2:101655209-101655289 1.0000 80 chr9:126717400-126717480 1.0000 80 chr4:113034329-113034409 1.0000 80 chr15:66662589-66662669 1.0000 80 chr3:15329167-15329247 1.0000 80 chr9:127728663-127728743 1.0000 80 chr11:71658749-71658829 1.0000 80 chr7:56101401-56101481 1.0000 80 chr5:89981611-89981691 1.0000 80 chr17:57773492-57773572 1.0000 80 chr9:33676363-33676443 1.0000 80 chr19:11292318-11292398 1.0000 80 chr1:145083620-145083700 1.0000 80 chr9:32554272-32554352 1.0000 80 chr5:138038286-138038366 1.0000 80 chr2:55327174-55327254 1.0000 80 chr10:72062237-72062317 1.0000 80 chr9:103160358-103160438 1.0000 80 chr9:131622871-131622951 1.0000 80 chr15:67973048-67973128 1.0000 80 chr14:24163902-24163982 1.0000 80 chr2:170873960-170874040 1.0000 80 chr1:30266109-30266189 1.0000 80 chr12:56319317-56319397 1.0000 80 chr18:1438621-1438701 1.0000 80 chr10:15745579-15745659 1.0000 80 chr16:89873134-89873214 1.0000 80 chr6:27569503-27569583 1.0000 80 chr1:90288747-90288827 1.0000 80 chr15:57545446-57545526 1.0000 80 chr10:22768416-22768496 1.0000 80 chr6:125335680-125335760 1.0000 80 chr1:194267334-194267414 1.0000 80 chr4:103746472-103746552 1.0000 80 chrX:118340340-118340420 1.0000 80 chr10:23801456-23801536 1.0000 80 chr6:36258517-36258597 1.0000 80 chr2:24476375-24476455 1.0000 80 chr17:32674263-32674343 1.0000 80 chr2:58828349-58828429 1.0000 80 chr17:61072341-61072421 1.0000 80 chr1:211564331-211564411 1.0000 80 chr12:93638077-93638157 1.0000 80 chr1:28561890-28561970 1.0000 80 chr8:82643717-82643797 1.0000 80 chr7:135133596-135133676 1.0000 80 chr10:106109474-10610955 1.0000 80 chr8:20058441-20058521 1.0000 80 chr1:234737513-234737593 1.0000 80 chr6:27716594-27716674 1.0000 80 chr14:103828310-10382839 1.0000 80 chr5:85263644-85263724 1.0000 80 chr5:32391197-32391277 1.0000 80 chr11:63456885-63456965 1.0000 80 chr2:24731900-24731980 1.0000 80 chr3:5023652-5023732 1.0000 80 chr14:92465684-92465764 1.0000 80 chr1:61586792-61586872 1.0000 80 chr1:234806859-234806939 1.0000 80 chr16:126343-126423 1.0000 80 chr16:9022352-9022432 1.0000 80 chr10:65462999-65463079 1.0000 80 chr3:32187175-32187255 1.0000 80 chr7:134298736-134298816 1.0000 80 chrX:65269052-65269132 1.0000 80 chr4:9850077-9850157 1.0000 80 chr5:10501910-10501990 1.0000 80 chr7:77168110-77168190 1.0000 80 chr19:52268023-52268103 1.0000 80 chr10:93389605-93389685 1.0000 80 chr1:180023280-180023360 1.0000 80 chr1:168515411-168515491 1.0000 80 chr3:32706209-32706289 1.0000 80 chr12:48745036-48745116 1.0000 80 chr6:135516741-135516821 1.0000 80 chr19:42514626-42514706 1.0000 80 chrX:132017524-132017604 1.0000 80 chr1:209847391-209847471 1.0000 80 chr9:101192108-101192188 1.0000 80 chr2:178284175-178284255 1.0000 80 chr2:208176416-208176496 1.0000 80 chr4:85618514-85618594 1.0000 80 chr12:121581753-12158183 1.0000 80 chr8:117889997-117890077 1.0000 80 chr13:96408545-96408625 1.0000 80 chr2:202271207-202271287 1.0000 80 chr2:171600890-171600970 1.0000 80 chr1:179263698-179263778 1.0000 80 chr3:195848984-195849064 1.0000 80 chr1:118208377-118208457 1.0000 80 chr1:186257295-186257375 1.0000 80 chr2:209117771-209117851 1.0000 80 chr14:74409946-74410026 1.0000 80 chr5:71578049-71578129 1.0000 80 chr21:40635503-40635583 1.0000 80 chr6:7661763-7661843 1.0000 80 chr10:82258691-82258771 1.0000 80 chr7:127907265-127907345 1.0000 80 chr2:12596674-12596754 1.0000 80 chr15:36626298-36626378 1.0000 80 chr5:72456115-72456195 1.0000 80 chr20:43664942-43665022 1.0000 80 chr4:123741342-123741422 1.0000 80 chr3:177904595-177904675 1.0000 80 chr3:157019179-157019259 1.0000 80 chr10:69550868-69550948 1.0000 80 chr16:22303365-22303445 1.0000 80 chr2:68647574-68647654 1.0000 80 chr7:134047827-134047907 1.0000 80 chr9:94181668-94181748 1.0000 80 chr16:11622073-11622153 1.0000 80 chr7:75496601-75496681 1.0000 80 chr3:5168455-5168535 1.0000 80 chr17:58460869-58460949 1.0000 80 chr1:160078786-160078866 1.0000 80 chr12:46951873-46951953 1.0000 80 chr1:116674590-116674670 1.0000 80 chr4:99153529-99153609 1.0000 80 chr2:135814542-135814622 1.0000 80 chr6:26304053-26304133 1.0000 80 chr9:128005740-128005820 1.0000 80 chrX:16826217-16826297 1.0000 80 chr3:25825755-25825835 1.0000 80 chr3:45429606-45429686 1.0000 80 chr1:148523247-148523327 1.0000 80 chr16:8623079-8623159 1.0000 80 chr1:109189611-109189691 1.0000 80 chr8:39964913-39964993 1.0000 80 chr20:45264202-45264282 1.0000 80 chr4:141348998-141349078 1.0000 80 chr22:22378237-22378317 1.0000 80 chr7:142411592-142411672 1.0000 80 chr7:135184758-135184838 1.0000 80 chr5:126011955-126012035 1.0000 80 chr4:26624737-26624817 1.0000 80 chr6:136547247-136547327 1.0000 80 chr3:5239442-5239522 1.0000 80 chr3:125072116-125072196 1.0000 80 chr10:70977086-70977166 1.0000 80 chr5:138855209-138855289 1.0000 80 chr11:64334195-64334275 1.0000 80 chr11:34393226-34393306 1.0000 80 chr4:82327144-82327224 1.0000 80 chr19:19513978-19514058 1.0000 80 chr6:27857200-27857280 1.0000 80 chr4:7001022-7001102 1.0000 80 chr5:142721529-142721609 1.0000 80 chr10:94607128-94607208 1.0000 80 chr5:163781309-163781389 1.0000 80 chr12:93521677-93521757 1.0000 80 chr1:147144003-147144083 1.0000 80 chr2:157257965-157258045 1.0000 80 chr7:156452081-156452161 1.0000 80 chr5:154028417-154028497 1.0000 80 chr21:38743240-38743320 1.0000 80 chr1:113614835-113614915 1.0000 80 chr11:3531010-3531090 1.0000 80 chr3:142779865-142779945 1.0000 80 chr1:16193536-16193616 1.0000 80 chr2:178029469-178029549 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_IRF9/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/IRF9.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.283 C 0.22 G 0.209 T 0.288 Background letter frequencies (from file dataset with add-one prior applied): A 0.283 C 0.22 G 0.209 T 0.288 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTGCGCAA MEME-1 width = 8 sites = 243 llr = 1741 E-value = 1.7e-261 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTGCGCAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::3:3:8a pos.-specific C :::7:72: probability G :37:7::: matrix T a7:3:3:: bits 2.3 2.0 1.8 * * 1.6 * * Relative 1.4 * * Entropy 1.1 ******** (10.3 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTGCGCAA consensus GATATC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCGCAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:16193536-16193616 20 1.40e-05 attcacagag ttgcgcaa ccattatcac chr12:93521677-93521757 28 1.40e-05 TGCGTAAACC TTGCGCAA TTCCGACAGG chr4:141348998-141349078 48 1.40e-05 CTACCTCCTG TTGCGCAA TGATTGGGTC chr16:11622073-11622153 24 1.40e-05 actcatgaca ttgcgcaa ccatcactac chr6:7661763-7661843 39 1.40e-05 agtcccagga ttgcgcaa tcatcactac chr3:195848984-195849064 24 1.40e-05 ATGTGAGCAG TTGCGCAA GACTCAGGAT chr3:32706209-32706289 17 1.40e-05 gacacaaaca ttgcgcaa ggccgcaggg chr7:77168110-77168190 24 1.40e-05 CCTACGGATA TTGCGCAA GACTGGGGCG chr16:9022352-9022432 44 1.40e-05 AAGAAGAGGA TTGCGCAA TTTGTACTGC chr16:126343-126423 51 1.40e-05 TGCCCAGAGA TTGCGCAA CCCCCAGCAC chr6:27716594-27716674 28 1.40e-05 tggaatgcag ttgcgcaa tctctgctca chr1:28561890-28561970 17 1.40e-05 tggagtgcag ttgcgcaa tctcggctca chr1:211564331-211564411 42 1.40e-05 tgagccgaga ttgcgcaa ctgcgctcca chr9:131622871-131622951 31 1.40e-05 tggagtgcag ttgcgcaa tctcggctca chr10:72062237-72062317 60 1.40e-05 gcggtgatgg ttgcgcaa catggtgaaa chr19:11292318-11292398 46 1.40e-05 atggtgacag ttgcgcaa cagtgtgaat chr9:33676363-33676443 26 1.40e-05 CAAAAGGATA TTGCGCAA CTCTGTAATT chr5:89981611-89981691 25 1.40e-05 GTAGAAACTA TTGCGCAA CTAATTATCA chr9:126717400-126717480 54 1.40e-05 AAAATATTGA TTGCGCAA CTCGGTGAGA chr5:121312860-121312940 48 1.40e-05 TTCCCTGTGA TTGCGCAA TGGAATGGTT chr17:73077149-73077229 62 1.40e-05 gcactccagc ttgcgcaa cagagtgaga chr2:119880381-119880461 58 1.40e-05 agctaccgta ttgcgcaa tacagGTCAG chr7:98771542-98771622 23 1.40e-05 attcgcattg ttgcgcaa ccatcaccac chr6:14727485-14727565 50 1.40e-05 gtggtgatca ttgcgcaa caatctgtac chr18:19279648-19279728 51 1.40e-05 tggagtgcaa ttgcgcaa tcttggctca chr2:216484919-216484999 16 1.40e-05 GCGTGGCAGG TTGCGCAA TAGGGCTGAA chr12:48163997-48164077 23 1.40e-05 CTTTCTTTTC TTGCGCAA TCTCACTTTC chr6:20573299-20573379 52 1.40e-05 AAGGACCATG TTGCGCAA CTCATTGTTA chr3:4753907-4753987 37 1.40e-05 AGATGAGCTG TTGCGCAA TCCTTTCAGT chr17:25739323-25739403 43 1.40e-05 taagctgaca ttgcgcaa ctgcactcca chr9:135893974-135894054 49 1.40e-05 ATCCACATTG TTGCGCAA CCATCACCAT chr8:37010936-37011016 54 1.40e-05 TGGGTCCATA TTGCGCAA TGTGCAGTGA chr3:47497463-47497543 64 1.40e-05 gaaagattaa ttgcgcaa caaaaggtg chr1:207811991-207812071 20 1.40e-05 ggagtaataa ttgcgcaa tcctgtctcc chr20:54824763-54824843 52 1.40e-05 GAGCCTGGAA TTGCGCAA CACCTTTAGG chr1:154997835-154997915 27 1.40e-05 tggagtgcag ttgcgcaa tctcggctca chr15:40129810-40129890 46 1.40e-05 ctaacattta ttgcgcaa taattacaag chr1:31584214-31584294 56 1.40e-05 ccagccaaga ttgcgcaa ctgcattcca chr12:123225109-12322518 33 1.40e-05 gtcacttacc ttgcgcaa cactccaatg chr15:93345381-93345461 37 1.40e-05 tagagtgcag ttgcgcaa tctcggctca chr6:144900236-144900316 29 1.40e-05 ATCTTATTCA TTGCGCAA TACATTTTGT chr1:167461281-167461361 13 1.40e-05 gtggtgatgg ttgcgcaa caatatgaat chr12:60567528-60567608 22 1.40e-05 TTCGAGAcag ttgcgcaa tcacggctca chr21:36312150-36312230 50 1.40e-05 AGCCCAACGA TTGCGCAA CATGTAACCA chr1:121267294-121267374 49 1.40e-05 GTCTCACATA TTGCGCAA TATAAGGTGA chr1:234762929-234763009 20 1.40e-05 aatttatata ttGCGcaa gacttagtct chr1:197153457-197153537 41 1.40e-05 gaatcccttg ttgcgcaa tagtgccttg chr9:115293268-115293348 35 1.40e-05 TAGCATGTGA TTGCGCAA CAACATAGAA chr5:140099723-140099803 36 1.40e-05 tgagccgaga ttgcgcaa ctgcactcca chr1:28572990-28573070 39 1.40e-05 ATATGTATCA TTGCGCAA CCTCGGTttt chr5:36373671-36373751 28 1.40e-05 TGTTCTCTGG TTGCGCAA CATGGTGAGT chr3:37066677-37066757 57 1.40e-05 gtggtgatgg ttgcgcaa caatgtaaat chr7:106554632-106554712 26 1.40e-05 CCAATCTGTG TTGCGCAA TACTTCTCAG chr11:67297060-67297140 30 1.40e-05 agggtaatga ttgcgcaa caccgaatat chr3:4946663-4946743 27 1.40e-05 TTCCTGAAGA TTGCGCAA GAGTCAACAG chr19:13908952-13909032 50 1.40e-05 gaaacaatga ttgcgcaa tgacacaatc chr3:151818434-151818514 52 1.40e-05 TGACAGGCTA TTGCGCAA TTCAGATTCT chr12:122682866-12268294 40 1.40e-05 attcacagag ttgcgcaa ccattaccac chr16:25017165-25017245 26 1.40e-05 acacacatta ttgcgcaa catcactttc chr1:179263698-179263778 26 2.42e-05 tggagtgcag tggcgcaa tctcggctca chr3:142779865-142779945 18 5.42e-05 actcatatga ttacgcaa tttccagaac chr5:138855209-138855289 71 5.42e-05 ATAGTCATGA TTACGCAA GA chr3:45429606-45429686 38 5.42e-05 GGCTAGAGGA TTACGCAA TATGGTGGAA chr3:25825755-25825835 73 5.42e-05 tgcataataa ttacgcaa chr14:92465684-92465764 35 5.42e-05 TAAAAGATGA TTACGCAA TCTCTCTAGC chr1:234737513-234737593 45 5.42e-05 GCTCTTTAGA TTACGCAA TCTAACTTCT chr9:32554272-32554352 52 5.42e-05 ACTGAATGTG TTACGCAA TCACCAGTTT chr3:15329167-15329247 57 5.42e-05 AAAGACTGGA TTACGCAA TGATGCAAAA chr6:136822795-136822875 28 5.42e-05 CAAACTTAAG TTACGCAA TGATCAGACC chr1:110575106-110575186 28 5.42e-05 AGAGTTATTA Ttacgcaa cacttctaag chr10:22013700-22013780 23 5.42e-05 TTACAGTGGA TTACGCAA TACTTTGGCC chr5:142431277-142431357 25 5.42e-05 CTCTCTAATG TTACGCAA TATTCCTATG chr5:163781309-163781389 22 7.26e-05 cttcctttga ttgcgtaa cttcagatgt chr1:109189611-109189691 27 7.26e-05 agcagtcgtg ttgcgtaa caacccacag chr3:177904595-177904675 60 7.26e-05 CTACATAATG TTGCGTAA TAGCTAGGTA chr1:186257295-186257375 29 7.26e-05 GATCATTACA TTGCGTAA TACATAGTTT chr12:48745036-48745116 22 7.26e-05 TTACCTGGAA TTGCGTAA CCGCCCGTTA chr1:234806859-234806939 32 7.26e-05 TTTGCAAATA TTGCGTAA TGTGCTCAGG chr2:24731900-24731980 54 7.26e-05 ctgtttgatc ttgcgtaa TCAACAAAAT chr5:85263644-85263724 58 7.26e-05 tatggttgta ttgcgtaa caccatttgt chr2:170873960-170874040 45 7.26e-05 CTAGAGAGGA TTGCGTAA TGCCTGGTAT chr4:113034329-113034409 48 7.26e-05 tggctaaaca ttgcgtaa catttgcaca chr14:100543189-10054326 15 7.26e-05 TGGGATTATA TTGCGTAA TAACGATGAC chr9:136989004-136989084 64 7.26e-05 aggttacata ttgcgtaa ctccatgta chr4:693292-693372 26 7.26e-05 accacgattg ttgcgtaa tgtgcttcgt chr4:8443376-8443456 33 7.26e-05 TAGCTGGATA TTGCGTAA TACCTAGGAG chr6:88441669-88441749 34 7.26e-05 TTCTGAATCA TTGCGTAA TAGGTTTCTG chr7:88518149-88518229 17 7.26e-05 catagatata ttgcgtaa agctgaggtt chr12:27702839-27702919 26 7.26e-05 TAAGCTGATG TTGCGTAA CCTCCCGGAG chr6:27857200-27857280 20 9.09e-05 tggagtgcaa ttgtgcaa tcatagttca chr10:82258691-82258771 31 9.09e-05 AGCGTGTGGA TTGTGCAA GACCCGGAGG chr12:121581753-12158183 8 9.09e-05 tcccaag ttgtgcaa ccatcatcac chr6:135516741-135516821 67 9.09e-05 ATCTGATACC TTGTGCAA CTTCAT chr5:32391197-32391277 24 9.09e-05 gttttaaatc ttgtgcaa ttttgagcag chr12:93638077-93638157 36 9.09e-05 ggttcagata ttgtgcaa tgcaaaacat chr2:58828349-58828429 14 9.09e-05 GTCATCTGTA TTGTGCAA CAGTTTGGGC chr4:103746472-103746552 9 9.09e-05 CTCTTCGA TTGTGCAA CAACCAAACA chr6:27569503-27569583 51 9.09e-05 AACCAGACGA TTGTGCAA TAATACTCCA chr1:145083620-145083700 46 9.09e-05 agtcacagaa ttgtgcaa tcattatcac chr2:175010640-175010720 44 9.09e-05 gagtgaggag ttgtgcaa tacttcagct chr3:20102501-20102581 47 9.09e-05 attcacatta ttgtgcaa tcatcaccac chr2:68989400-68989480 48 9.09e-05 atggtgatgg ttgtgcaa taatgtgaat chr10:94607128-94607208 25 1.10e-04 gctctaacta ttgcacaa tacCACCTCC chr4:82327144-82327224 31 1.10e-04 GCTACAGGGA TTGCACAA TAGAGCCAGG chr1:116674590-116674670 32 1.10e-04 ggttttcgtg ttgcacaa ctagctagtt chr17:58460869-58460949 49 1.10e-04 GTTCAGAATA TTGCACAA TAGTGATAGA chr3:5168455-5168535 48 1.10e-04 CTGGCAGTTA TTGCACAA TAAGTCATGT chr14:74409946-74410026 21 1.10e-04 ctgcaaccag ttgcacaa tttctctact chr2:171600890-171600970 16 1.10e-04 ATGGCGCACA TTGCACAA TATGCAGAAA chr2:202271207-202271287 50 1.10e-04 AAAATGAGTA TTGCACAA TAGTCCTTCT chr19:52268023-52268103 30 1.10e-04 TCACCTGTCA TTGCACAA TCATCCTTCC chr3:5023652-5023732 42 1.10e-04 TCTTGGTGAA TTGCACAA TCTAGCGAAA chr15:41982173-41982253 26 1.10e-04 attcacagga ttgcacaa ccgttacttc chr1:230996512-230996592 47 1.10e-04 gtggtgatga ttgcacaa cattgagact chr2:178029469-178029549 15 1.32e-04 TACCACTAGC TGGCGCCA GAGCCCTAAA chr7:75496601-75496681 63 1.32e-04 tggagtgcag tgacgcaa tcatggctca chr7:134047827-134047907 32 1.32e-04 AGCCCCTGGC TGACGCAA TACTGTTTGC chr4:123741342-123741422 48 1.32e-04 tctaaaattg tgacgcaa tatcgtctgc chr21:40635503-40635583 30 1.32e-04 atgatacata tgacgcaa tgagggagca chr21:46388160-46388240 69 1.32e-04 CACCACCCGG TGACGCAA CCCC chr7:156452081-156452161 49 2.26e-04 CCATGCACGA TTGCGTCA TCCTTCCTTT chr2:208176416-208176496 67 2.26e-04 AGACATATTG TTGCGTCA TCTGAA chr1:168515411-168515491 25 2.26e-04 agaaagcctg ttacgtaa taattgctca chr10:23801456-23801536 42 2.26e-04 tgatgaaatc ttgcgtca tcctgctcca chr20:43664942-43665022 26 2.65e-04 tgatgcaatc ttgtgcca tggcgcatca chr8:20058441-20058521 4 2.65e-04 TTA TTATGCAA TGGCTGTCAA chr2:157257965-157258045 16 3.30e-04 ATGCACAGGA TTACACAA TCACCTAGCC chr11:93141128-93141208 14 3.30e-04 ATTGTATGTA TTGCACCA TCCAACAGTG chr4:85618514-85618594 32 4.19e-04 AAATCTGAAA TGACGTAA CTTTTTGCTG chr5:142721529-142721609 18 4.47e-04 TTGTCCAGGA TGATGCAA TTATTGAATC chr11:34393226-34393306 38 4.47e-04 ATAATACTGA TGATGCAA CTCTGTCTCT chr11:64334195-64334275 36 4.47e-04 GTTTATTGGG TGATGCAA TCAGGTGACG chr10:70977086-70977166 43 4.47e-04 AAAAAGGGAA TGATGCAA TAGATGAAAA chr5:126011955-126012035 62 4.47e-04 attactgtga tgatgcaa ttgctaaaat chr1:148523247-148523327 60 4.47e-04 AAGCTGAAGC TGATGCAA CCACGTGAAA chr12:46951873-46951953 54 4.47e-04 gccagggaga tgatgcaa tactgggaaa chr1:160078786-160078866 58 4.47e-04 aatgtctaaa tGATGCAA TAACATCAAA chr16:22303365-22303445 12 4.47e-04 CCAGGGGTTC TGATGCAA CATTCTGCAT chr15:36626298-36626378 30 4.47e-04 GCTTTAAGGA TGATGCAA CCATTGGATT chr5:71578049-71578129 27 4.47e-04 TCAAAAACCA TGATGCAA TCAACTGAAA chr2:209117771-209117851 52 4.47e-04 CTATATAGTA TGATGCAA CAGTCATGAC chr13:96408545-96408625 41 4.47e-04 TTAAACTGGA TGATGCAA TCATTCCGGG chr2:178284175-178284255 18 4.47e-04 TAATAAAAAG TGATGCAA TACTTCAGCA chr9:101192108-101192188 1 4.47e-04 . tgatgcaa tctagatttc chr19:42514626-42514706 35 4.47e-04 agcccaaaga tgatgcaa catgctgaaa chr1:180023280-180023360 26 4.47e-04 TGTTGTCATA TGATGCAA TATTGTAAAC chr7:134298736-134298816 40 4.47e-04 tgtccgttta tgatgcaa tacctcaaac chr3:32187175-32187255 20 4.47e-04 CCAACCCAGA TGATGCAA CAGTGTTGCA chr1:61586792-61586872 20 4.47e-04 GTACTGCAAA TGATGCAA TAGCTAAATA chr10:106109474-10610955 25 4.47e-04 cactgtggga tgatgcaa gaagtagaat chr7:135133596-135133676 44 4.47e-04 ttgatagaga tgatgcaa tccaaagaat chr17:61072341-61072421 23 4.47e-04 tcttgaaaga tgatgcaa tactttgggc chr17:32674263-32674343 28 4.47e-04 ACTAAAATGA TGATGCAA CAACTGGTAA chr2:24476375-24476455 48 4.47e-04 ttgtttaggA TGATGCAA CACTGCCATC chr6:36258517-36258597 21 4.47e-04 AAAGGAAAGA TGATGCAA TGGTTTCAAG chr1:194267334-194267414 23 4.47e-04 ATCAATTCCC TGATGCAA TGTACAGGGA chr10:22768416-22768496 46 4.47e-04 CCTCCCCAGA TGATGCAA TACTAGAACA chr15:57545446-57545526 49 4.47e-04 ACAGACTGGA TGATGCAA TCCATGTGCT chr1:90288747-90288827 39 4.47e-04 GAGTAGCATA TGATGCAA CACTTAAAGT chr10:15745579-15745659 27 4.47e-04 CCCCCAAGTA TGATGCAA CAGTGTGACA chr12:56319317-56319397 26 4.47e-04 GAAAAAAATA TGATGCAA TAGGTCTGGG chr14:24163902-24163982 18 4.47e-04 cttacagatc tgatgcaa tccatctttc chr9:103160358-103160438 58 4.47e-04 AAGGAAAATA TGATGCAA TCGATGGTGT chr2:55327174-55327254 33 4.47e-04 CTACTTTAAA TGATGCAA TACTTGCACA chr5:138038286-138038366 55 4.47e-04 tccataaaaa tgatgcaa taacgtttgt chr11:71658749-71658829 47 4.47e-04 agtagtagga tgatgcaa tcaggtgtgt chr2:101655209-101655289 24 4.47e-04 AGAAAGGAGA TGATGCAA TGGCGAGAAA chr6:36617765-36617845 27 4.47e-04 GTGACAATGA TGATGCAA CATTTTTATG chr3:195782795-195782875 36 4.47e-04 tagagtgcag tgatgcaa tcacagctcc chr1:243376470-243376550 61 4.47e-04 cctacgagca tgatgcaa tagtgaaata chr6:53494895-53494975 35 4.47e-04 TCCTAGAAGA TGATGCAA TAGATGACAA chr8:16423319-16423399 38 4.47e-04 atttgaaaga tgatgcaa cactgtgaaa chr5:145572370-145572450 19 4.47e-04 taaaccagga tgatgcaa tagagagtaa chr10:127093610-12709369 56 4.47e-04 catggtgaca tgatgcaa catcatggtg chr1:193080861-193080941 45 4.47e-04 tggaatgcga tgatgcaa tcacagctca chr6:160522094-160522174 71 4.47e-04 actacataca tgatgcaa tt chr2:242218985-242219065 57 4.47e-04 gggagatgga tgatgcaa tcaatggctc chr6:15368564-15368644 26 4.47e-04 TGTTTCATGG TGATGCAA TACTTTTACT chr19:30444434-30444514 51 4.47e-04 tcttgaaaga tgatgcaa tatcctaggc chr6:26304053-26304133 45 4.94e-04 cagagtgcag tgacacaa tcgagagtca chr1:113614835-113614915 27 6.93e-04 ttggggcttg ttgcatca tcagcaataa chr4:7001022-7001102 22 6.93e-04 CGAGTTGAAG TTGcatca tcttccttcc chr19:19513978-19514058 26 6.93e-04 CTGAAGGTGA TTGCATCA TATTTCATAA chr3:5239442-5239522 23 6.93e-04 TGCAGCATTA TTGCATCA TCTTCTAAAA chr4:26624737-26624817 27 6.93e-04 ATGACTTGTA TTGCATCA TGTTCTTCCT chr7:135184758-135184838 49 6.93e-04 ATGTACTATG TTGCATCA TCTTAATCAC chr8:39964913-39964993 23 6.93e-04 TTCCATAACA TTGCATCA TCCTGCTTCT chr16:8623079-8623159 25 6.93e-04 AGCACCTTGA TTGCATCA TGCAAGCTTT chr9:128005740-128005820 72 6.93e-04 CTTCTTTGGC TTGCATCA G chr2:135814542-135814622 23 6.93e-04 TGCTGTTAGA TTGCATCA TACTTAGCTT chr4:99153529-99153609 27 6.93e-04 ttatctaaag ttgcatca tcacttccac chr2:68647574-68647654 19 6.93e-04 TTGCTTGTTA TTGCATCA TGCATACCCT chr10:69550868-69550948 34 6.93e-04 TTCTCAGTAA TTGCATCA GTTTTACAAT chr3:157019179-157019259 26 6.93e-04 aacctctcta ttgcatca tcccggcaat chr2:12596674-12596754 61 6.93e-04 TTAAAAAAAA TTGCATCA TATCTCATTT chr7:127907265-127907345 19 6.93e-04 CCTGTTGGTG TTGCATCA TTCCTGCTCA chr1:118208377-118208457 22 6.93e-04 gtctccaata ttgcatca tctctagaat chr8:117889997-117890077 45 6.93e-04 GTGGCAGTTG TTGCATCA TCTCAAAAAA chr1:209847391-209847471 28 6.93e-04 TGTTGCAAGA TTGCATCA CTGACCTTTG chr5:10501910-10501990 11 6.93e-04 AAAGAGAGGA TTGCATCA CTTCTTCCCA chr4:9850077-9850157 46 6.93e-04 TTTCCAtgga ttgcatca tcatctttgc chrX:65269052-65269132 59 6.93e-04 aagatgttta ttgcatca tcgatggtaa chr10:65462999-65463079 32 6.93e-04 TGGGAATTGA TTGCATCA TCCTCACACC chr11:63456885-63456965 28 6.93e-04 TTGCTTGTGA TTGCATCA TTGAAGTCTT chr14:103828310-10382839 47 6.93e-04 tagcaagaga ttgcatca tgctcctcag chr8:82643717-82643797 59 6.93e-04 TGCAGCAGTA TTGCATCA TCTATAAGCA chrX:118340340-118340420 23 6.93e-04 TGTCCCATGA TTGCATCA TCTCAGATCT chr6:125335680-125335760 18 6.93e-04 tctgtgatga ttgcatca tctcactgta chr18:1438621-1438701 32 6.93e-04 AATGACATTG TTGCATCA TACAGAAATG chr15:67973048-67973128 41 6.93e-04 caaagaTTTA TTGCATCA TCGTTAAAAA chr17:57773492-57773572 46 6.93e-04 TTGCATTTTG TTGCATCA CTTTTGCAGC chr7:56101401-56101481 26 6.93e-04 CTGTGTAGGA TTGCATCA TTCATTCATG chr9:127728663-127728743 60 6.93e-04 tgatttaata ttgcatca ttacttttgt chr15:66662589-66662669 73 6.93e-04 GCAATTGAAA TTGCATCA chr5:118658875-118658955 51 6.93e-04 gtccatctga ttgcatca tcctttgctt chr4:186167772-186167852 50 6.93e-04 tacatttcga ttgcatca tcttttgtga chr1:100788584-100788664 53 6.93e-04 CCTAGTAAAA TTGCATCA TTTTTTGGTT chr1:221490011-221490091 45 6.93e-04 TGTCATGCTA TTGCATCA GCCTAGTATG chr15:43834122-43834202 29 6.93e-04 gtgctgtata ttgcatca tactggaggc chr11:38788460-38788540 18 6.93e-04 CTACTATATG TTGCATCA CCTTATCTAC chr6:135410086-135410166 41 6.93e-04 CTCTGAACTA TTGCATCA CTCCCATGAT chr5:145061367-145061447 46 6.93e-04 ACAGTAAATA TTGCATCA TACCCAGCTT chr5:30101200-30101280 52 6.93e-04 catcatatga ttgcatca tacccacctg chrX:151065776-151065856 35 6.93e-04 cagtgaatga ttgcatca tcctcacagt chr1:150973059-150973139 17 6.93e-04 AGCACTGTCA TTGCATCA TCCACATTCT chr4:169332904-169332984 25 6.93e-04 tagggagtga ttgcatca tccctccccc chr18:29291529-29291609 33 6.93e-04 TGCACAGAAA TTGCATCA TATACCATAC chr5:138340511-138340591 47 6.93e-04 aagacaagta ttgcatca tcttgtgcat chr10:93389605-93389685 9 8.25e-04 TCCTAAAA TTGAGCAA TACAGACCTA chr21:38743240-38743320 38 1.04e-03 ATCTTGACTG TTGGGCAA TTTTCTGATG chr9:94181668-94181748 25 1.04e-03 GTCAGGCACA TTGCTCAA CGTCCGAAAG chr12:131069172-13106925 62 1.06e-03 atcacaacca ttacatca tcactatcac chrX:16826217-16826297 46 1.14e-03 GGAAGGAAGA TTGCGAAA TATATCCTTT chr16:89873134-89873214 52 1.14e-03 aaccatctga tttcgcaa tcttttcccc chr1:150943829-150943909 28 1.14e-03 ACTGTAGCCC TTGCGAAA TCCCTCAGCC chr15:57263416-57263496 23 1.22e-03 caggccaaca tcgcgcaa ctccatctcc chr6:136547247-136547327 28 1.26e-03 AATTTAACAA TTAAGCAA TACTATCCCT chr5:154028417-154028497 16 1.41e-03 agaaacagaa tgtcgcaa taatgacttc chr2:183897062-183897142 39 1.58e-03 cagtcatgca ttgcttaa tgtcatcaga chr3:142569708-142569788 68 1.58e-03 agagggagga ttgcttaa cagat chr3:125072116-125072196 65 2.07e-03 tcctttgtga tgaggcaa tagttctg chr1:147144003-147144083 20 2.22e-03 tcagaggcat ttgaacca tagtgactcc chr22:22378237-22378317 33 2.72e-03 ctattcaaca tggagtca ctctggttct -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCGCAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:16193536-16193616 1.4e-05 19_[+1]_53 chr12:93521677-93521757 1.4e-05 27_[+1]_45 chr4:141348998-141349078 1.4e-05 47_[+1]_25 chr16:11622073-11622153 1.4e-05 23_[+1]_49 chr6:7661763-7661843 1.4e-05 38_[+1]_34 chr3:195848984-195849064 1.4e-05 23_[+1]_49 chr3:32706209-32706289 1.4e-05 16_[+1]_56 chr7:77168110-77168190 1.4e-05 23_[+1]_49 chr16:9022352-9022432 1.4e-05 43_[+1]_29 chr16:126343-126423 1.4e-05 50_[+1]_22 chr6:27716594-27716674 1.4e-05 27_[+1]_45 chr1:28561890-28561970 1.4e-05 16_[+1]_56 chr1:211564331-211564411 1.4e-05 41_[+1]_31 chr9:131622871-131622951 1.4e-05 30_[+1]_42 chr10:72062237-72062317 1.4e-05 59_[+1]_13 chr19:11292318-11292398 1.4e-05 45_[+1]_27 chr9:33676363-33676443 1.4e-05 25_[+1]_47 chr5:89981611-89981691 1.4e-05 24_[+1]_48 chr9:126717400-126717480 1.4e-05 53_[+1]_19 chr5:121312860-121312940 1.4e-05 47_[+1]_25 chr17:73077149-73077229 1.4e-05 61_[+1]_11 chr2:119880381-119880461 1.4e-05 57_[+1]_15 chr7:98771542-98771622 1.4e-05 22_[+1]_50 chr6:14727485-14727565 1.4e-05 49_[+1]_23 chr18:19279648-19279728 1.4e-05 50_[+1]_22 chr2:216484919-216484999 1.4e-05 15_[+1]_57 chr12:48163997-48164077 1.4e-05 22_[+1]_50 chr6:20573299-20573379 1.4e-05 51_[+1]_21 chr3:4753907-4753987 1.4e-05 36_[+1]_36 chr17:25739323-25739403 1.4e-05 42_[+1]_30 chr9:135893974-135894054 1.4e-05 48_[+1]_24 chr8:37010936-37011016 1.4e-05 53_[+1]_19 chr3:47497463-47497543 1.4e-05 63_[+1]_9 chr1:207811991-207812071 1.4e-05 19_[+1]_53 chr20:54824763-54824843 1.4e-05 51_[+1]_21 chr1:154997835-154997915 1.4e-05 26_[+1]_46 chr15:40129810-40129890 1.4e-05 45_[+1]_27 chr1:31584214-31584294 1.4e-05 55_[+1]_17 chr12:123225109-12322518 1.4e-05 32_[+1]_40 chr15:93345381-93345461 1.4e-05 36_[+1]_36 chr6:144900236-144900316 1.4e-05 28_[+1]_44 chr1:167461281-167461361 1.4e-05 12_[+1]_60 chr12:60567528-60567608 1.4e-05 21_[+1]_51 chr21:36312150-36312230 1.4e-05 49_[+1]_23 chr1:121267294-121267374 1.4e-05 48_[+1]_24 chr1:234762929-234763009 1.4e-05 19_[+1]_53 chr1:197153457-197153537 1.4e-05 40_[+1]_32 chr9:115293268-115293348 1.4e-05 34_[+1]_38 chr5:140099723-140099803 1.4e-05 35_[+1]_37 chr1:28572990-28573070 1.4e-05 38_[+1]_34 chr5:36373671-36373751 1.4e-05 27_[+1]_45 chr3:37066677-37066757 1.4e-05 56_[+1]_16 chr7:106554632-106554712 1.4e-05 25_[+1]_47 chr11:67297060-67297140 1.4e-05 29_[+1]_43 chr3:4946663-4946743 1.4e-05 26_[+1]_46 chr19:13908952-13909032 1.4e-05 49_[+1]_23 chr3:151818434-151818514 1.4e-05 51_[+1]_21 chr12:122682866-12268294 1.4e-05 39_[+1]_33 chr16:25017165-25017245 1.4e-05 25_[+1]_47 chr1:179263698-179263778 2.4e-05 25_[+1]_47 chr3:142779865-142779945 5.4e-05 17_[+1]_55 chr5:138855209-138855289 5.4e-05 70_[+1]_2 chr3:45429606-45429686 5.4e-05 37_[+1]_35 chr3:25825755-25825835 5.4e-05 72_[+1] chr14:92465684-92465764 5.4e-05 34_[+1]_38 chr1:234737513-234737593 5.4e-05 44_[+1]_28 chr9:32554272-32554352 5.4e-05 51_[+1]_21 chr3:15329167-15329247 5.4e-05 56_[+1]_16 chr6:136822795-136822875 5.4e-05 27_[+1]_45 chr1:110575106-110575186 5.4e-05 27_[+1]_45 chr10:22013700-22013780 5.4e-05 22_[+1]_50 chr5:142431277-142431357 5.4e-05 24_[+1]_48 chr5:163781309-163781389 7.3e-05 21_[+1]_51 chr1:109189611-109189691 7.3e-05 26_[+1]_46 chr3:177904595-177904675 7.3e-05 59_[+1]_13 chr1:186257295-186257375 7.3e-05 28_[+1]_44 chr12:48745036-48745116 7.3e-05 21_[+1]_51 chr1:234806859-234806939 7.3e-05 31_[+1]_41 chr2:24731900-24731980 7.3e-05 53_[+1]_19 chr5:85263644-85263724 7.3e-05 57_[+1]_15 chr2:170873960-170874040 7.3e-05 44_[+1]_28 chr4:113034329-113034409 7.3e-05 47_[+1]_25 chr14:100543189-10054326 7.3e-05 14_[+1]_58 chr9:136989004-136989084 7.3e-05 63_[+1]_9 chr4:693292-693372 7.3e-05 25_[+1]_47 chr4:8443376-8443456 7.3e-05 32_[+1]_40 chr6:88441669-88441749 7.3e-05 33_[+1]_39 chr7:88518149-88518229 7.3e-05 16_[+1]_56 chr12:27702839-27702919 7.3e-05 25_[+1]_47 chr6:27857200-27857280 9.1e-05 19_[+1]_53 chr10:82258691-82258771 9.1e-05 30_[+1]_42 chr12:121581753-12158183 9.1e-05 7_[+1]_65 chr6:135516741-135516821 9.1e-05 66_[+1]_6 chr5:32391197-32391277 9.1e-05 23_[+1]_49 chr12:93638077-93638157 9.1e-05 35_[+1]_37 chr2:58828349-58828429 9.1e-05 13_[+1]_59 chr4:103746472-103746552 9.1e-05 8_[+1]_64 chr6:27569503-27569583 9.1e-05 50_[+1]_22 chr1:145083620-145083700 9.1e-05 45_[+1]_27 chr2:175010640-175010720 9.1e-05 43_[+1]_29 chr3:20102501-20102581 9.1e-05 46_[+1]_26 chr2:68989400-68989480 9.1e-05 47_[+1]_25 chr10:94607128-94607208 0.00011 24_[+1]_48 chr4:82327144-82327224 0.00011 30_[+1]_42 chr1:116674590-116674670 0.00011 31_[+1]_41 chr17:58460869-58460949 0.00011 48_[+1]_24 chr3:5168455-5168535 0.00011 47_[+1]_25 chr14:74409946-74410026 0.00011 20_[+1]_52 chr2:171600890-171600970 0.00011 15_[+1]_57 chr2:202271207-202271287 0.00011 49_[+1]_23 chr19:52268023-52268103 0.00011 29_[+1]_43 chr3:5023652-5023732 0.00011 41_[+1]_31 chr15:41982173-41982253 0.00011 25_[+1]_47 chr1:230996512-230996592 0.00011 46_[+1]_26 chr2:178029469-178029549 0.00013 14_[+1]_58 chr7:75496601-75496681 0.00013 62_[+1]_10 chr7:134047827-134047907 0.00013 31_[+1]_41 chr4:123741342-123741422 0.00013 47_[+1]_25 chr21:40635503-40635583 0.00013 29_[+1]_43 chr21:46388160-46388240 0.00013 68_[+1]_4 chr7:156452081-156452161 0.00023 48_[+1]_24 chr2:208176416-208176496 0.00023 66_[+1]_6 chr1:168515411-168515491 0.00023 24_[+1]_48 chr10:23801456-23801536 0.00023 41_[+1]_31 chr20:43664942-43665022 0.00027 25_[+1]_47 chr8:20058441-20058521 0.00027 3_[+1]_69 chr2:157257965-157258045 0.00033 15_[+1]_57 chr11:93141128-93141208 0.00033 13_[+1]_59 chr4:85618514-85618594 0.00042 31_[+1]_41 chr5:142721529-142721609 0.00045 17_[+1]_55 chr11:34393226-34393306 0.00045 37_[+1]_35 chr11:64334195-64334275 0.00045 35_[+1]_37 chr10:70977086-70977166 0.00045 42_[+1]_30 chr5:126011955-126012035 0.00045 61_[+1]_11 chr1:148523247-148523327 0.00045 59_[+1]_13 chr12:46951873-46951953 0.00045 53_[+1]_19 chr1:160078786-160078866 0.00045 57_[+1]_15 chr16:22303365-22303445 0.00045 11_[+1]_61 chr15:36626298-36626378 0.00045 29_[+1]_43 chr5:71578049-71578129 0.00045 26_[+1]_46 chr2:209117771-209117851 0.00045 51_[+1]_21 chr13:96408545-96408625 0.00045 40_[+1]_32 chr2:178284175-178284255 0.00045 17_[+1]_55 chr9:101192108-101192188 0.00045 [+1]_72 chr19:42514626-42514706 0.00045 34_[+1]_38 chr1:180023280-180023360 0.00045 25_[+1]_47 chr7:134298736-134298816 0.00045 39_[+1]_33 chr3:32187175-32187255 0.00045 19_[+1]_53 chr1:61586792-61586872 0.00045 19_[+1]_53 chr10:106109474-10610955 0.00045 24_[+1]_48 chr7:135133596-135133676 0.00045 43_[+1]_29 chr17:61072341-61072421 0.00045 22_[+1]_50 chr17:32674263-32674343 0.00045 27_[+1]_45 chr2:24476375-24476455 0.00045 47_[+1]_25 chr6:36258517-36258597 0.00045 20_[+1]_52 chr1:194267334-194267414 0.00045 22_[+1]_50 chr10:22768416-22768496 0.00045 45_[+1]_27 chr15:57545446-57545526 0.00045 48_[+1]_24 chr1:90288747-90288827 0.00045 38_[+1]_34 chr10:15745579-15745659 0.00045 26_[+1]_46 chr12:56319317-56319397 0.00045 25_[+1]_47 chr14:24163902-24163982 0.00045 17_[+1]_55 chr9:103160358-103160438 0.00045 57_[+1]_15 chr2:55327174-55327254 0.00045 32_[+1]_40 chr5:138038286-138038366 0.00045 54_[+1]_18 chr11:71658749-71658829 0.00045 46_[+1]_26 chr2:101655209-101655289 0.00045 23_[+1]_49 chr6:36617765-36617845 0.00045 26_[+1]_46 chr3:195782795-195782875 0.00045 35_[+1]_37 chr1:243376470-243376550 0.00045 60_[+1]_12 chr6:53494895-53494975 0.00045 34_[+1]_38 chr8:16423319-16423399 0.00045 37_[+1]_35 chr5:145572370-145572450 0.00045 18_[+1]_54 chr10:127093610-12709369 0.00045 55_[+1]_17 chr1:193080861-193080941 0.00045 44_[+1]_28 chr6:160522094-160522174 0.00045 70_[+1]_2 chr2:242218985-242219065 0.00045 56_[+1]_16 chr6:15368564-15368644 0.00045 25_[+1]_47 chr19:30444434-30444514 0.00045 50_[+1]_22 chr6:26304053-26304133 0.00049 44_[+1]_28 chr1:113614835-113614915 0.00069 26_[+1]_46 chr4:7001022-7001102 0.00069 21_[+1]_51 chr19:19513978-19514058 0.00069 25_[+1]_47 chr3:5239442-5239522 0.00069 22_[+1]_50 chr4:26624737-26624817 0.00069 26_[+1]_46 chr7:135184758-135184838 0.00069 48_[+1]_24 chr8:39964913-39964993 0.00069 22_[+1]_50 chr16:8623079-8623159 0.00069 24_[+1]_48 chr9:128005740-128005820 0.00069 71_[+1]_1 chr2:135814542-135814622 0.00069 22_[+1]_50 chr4:99153529-99153609 0.00069 26_[+1]_46 chr2:68647574-68647654 0.00069 18_[+1]_54 chr10:69550868-69550948 0.00069 33_[+1]_39 chr3:157019179-157019259 0.00069 25_[+1]_47 chr2:12596674-12596754 0.00069 60_[+1]_12 chr7:127907265-127907345 0.00069 18_[+1]_54 chr1:118208377-118208457 0.00069 21_[+1]_51 chr8:117889997-117890077 0.00069 44_[+1]_28 chr1:209847391-209847471 0.00069 27_[+1]_45 chr5:10501910-10501990 0.00069 10_[+1]_62 chr4:9850077-9850157 0.00069 45_[+1]_27 chrX:65269052-65269132 0.00069 58_[+1]_14 chr10:65462999-65463079 0.00069 31_[+1]_41 chr11:63456885-63456965 0.00069 27_[+1]_45 chr14:103828310-10382839 0.00069 46_[+1]_26 chr8:82643717-82643797 0.00069 58_[+1]_14 chrX:118340340-118340420 0.00069 22_[+1]_50 chr6:125335680-125335760 0.00069 17_[+1]_55 chr18:1438621-1438701 0.00069 31_[+1]_41 chr15:67973048-67973128 0.00069 40_[+1]_32 chr17:57773492-57773572 0.00069 45_[+1]_27 chr7:56101401-56101481 0.00069 25_[+1]_47 chr9:127728663-127728743 0.00069 59_[+1]_13 chr15:66662589-66662669 0.00069 72_[+1] chr5:118658875-118658955 0.00069 50_[+1]_22 chr4:186167772-186167852 0.00069 49_[+1]_23 chr1:100788584-100788664 0.00069 52_[+1]_20 chr1:221490011-221490091 0.00069 44_[+1]_28 chr15:43834122-43834202 0.00069 28_[+1]_44 chr11:38788460-38788540 0.00069 17_[+1]_55 chr6:135410086-135410166 0.00069 40_[+1]_32 chr5:145061367-145061447 0.00069 45_[+1]_27 chr5:30101200-30101280 0.00069 51_[+1]_21 chrX:151065776-151065856 0.00069 34_[+1]_38 chr1:150973059-150973139 0.00069 16_[+1]_56 chr4:169332904-169332984 0.00069 24_[+1]_48 chr18:29291529-29291609 0.00069 32_[+1]_40 chr5:138340511-138340591 0.00069 46_[+1]_26 chr10:93389605-93389685 0.00083 8_[+1]_64 chr21:38743240-38743320 0.001 37_[+1]_35 chr9:94181668-94181748 0.001 24_[+1]_48 chr12:131069172-13106925 0.0011 61_[+1]_11 chrX:16826217-16826297 0.0011 45_[+1]_27 chr16:89873134-89873214 0.0011 51_[+1]_21 chr1:150943829-150943909 0.0011 27_[+1]_45 chr15:57263416-57263496 0.0012 22_[+1]_50 chr6:136547247-136547327 0.0013 27_[+1]_45 chr5:154028417-154028497 0.0014 15_[+1]_57 chr2:183897062-183897142 0.0016 38_[+1]_34 chr3:142569708-142569788 0.0016 67_[+1]_5 chr3:125072116-125072196 0.0021 64_[+1]_8 chr1:147144003-147144083 0.0022 19_[+1]_53 chr22:22378237-22378317 0.0027 32_[+1]_40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCGCAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTGCGCAA width=8 seqs=243 chr1:16193536-16193616 ( 20) TTGCGCAA 1 chr12:93521677-93521757 ( 28) TTGCGCAA 1 chr4:141348998-141349078 ( 48) TTGCGCAA 1 chr16:11622073-11622153 ( 24) TTGCGCAA 1 chr6:7661763-7661843 ( 39) TTGCGCAA 1 chr3:195848984-195849064 ( 24) TTGCGCAA 1 chr3:32706209-32706289 ( 17) TTGCGCAA 1 chr7:77168110-77168190 ( 24) TTGCGCAA 1 chr16:9022352-9022432 ( 44) TTGCGCAA 1 chr16:126343-126423 ( 51) TTGCGCAA 1 chr6:27716594-27716674 ( 28) TTGCGCAA 1 chr1:28561890-28561970 ( 17) TTGCGCAA 1 chr1:211564331-211564411 ( 42) TTGCGCAA 1 chr9:131622871-131622951 ( 31) TTGCGCAA 1 chr10:72062237-72062317 ( 60) TTGCGCAA 1 chr19:11292318-11292398 ( 46) TTGCGCAA 1 chr9:33676363-33676443 ( 26) TTGCGCAA 1 chr5:89981611-89981691 ( 25) TTGCGCAA 1 chr9:126717400-126717480 ( 54) TTGCGCAA 1 chr5:121312860-121312940 ( 48) TTGCGCAA 1 chr17:73077149-73077229 ( 62) TTGCGCAA 1 chr2:119880381-119880461 ( 58) TTGCGCAA 1 chr7:98771542-98771622 ( 23) TTGCGCAA 1 chr6:14727485-14727565 ( 50) TTGCGCAA 1 chr18:19279648-19279728 ( 51) TTGCGCAA 1 chr2:216484919-216484999 ( 16) TTGCGCAA 1 chr12:48163997-48164077 ( 23) TTGCGCAA 1 chr6:20573299-20573379 ( 52) TTGCGCAA 1 chr3:4753907-4753987 ( 37) TTGCGCAA 1 chr17:25739323-25739403 ( 43) TTGCGCAA 1 chr9:135893974-135894054 ( 49) TTGCGCAA 1 chr8:37010936-37011016 ( 54) TTGCGCAA 1 chr3:47497463-47497543 ( 64) TTGCGCAA 1 chr1:207811991-207812071 ( 20) TTGCGCAA 1 chr20:54824763-54824843 ( 52) TTGCGCAA 1 chr1:154997835-154997915 ( 27) TTGCGCAA 1 chr15:40129810-40129890 ( 46) TTGCGCAA 1 chr1:31584214-31584294 ( 56) TTGCGCAA 1 chr12:123225109-12322518 ( 33) TTGCGCAA 1 chr15:93345381-93345461 ( 37) TTGCGCAA 1 chr6:144900236-144900316 ( 29) TTGCGCAA 1 chr1:167461281-167461361 ( 13) TTGCGCAA 1 chr12:60567528-60567608 ( 22) TTGCGCAA 1 chr21:36312150-36312230 ( 50) TTGCGCAA 1 chr1:121267294-121267374 ( 49) TTGCGCAA 1 chr1:234762929-234763009 ( 20) TTGCGCAA 1 chr1:197153457-197153537 ( 41) TTGCGCAA 1 chr9:115293268-115293348 ( 35) TTGCGCAA 1 chr5:140099723-140099803 ( 36) TTGCGCAA 1 chr1:28572990-28573070 ( 39) TTGCGCAA 1 chr5:36373671-36373751 ( 28) TTGCGCAA 1 chr3:37066677-37066757 ( 57) TTGCGCAA 1 chr7:106554632-106554712 ( 26) TTGCGCAA 1 chr11:67297060-67297140 ( 30) TTGCGCAA 1 chr3:4946663-4946743 ( 27) TTGCGCAA 1 chr19:13908952-13909032 ( 50) TTGCGCAA 1 chr3:151818434-151818514 ( 52) TTGCGCAA 1 chr12:122682866-12268294 ( 40) TTGCGCAA 1 chr16:25017165-25017245 ( 26) TTGCGCAA 1 chr1:179263698-179263778 ( 26) TGGCGCAA 1 chr3:142779865-142779945 ( 18) TTACGCAA 1 chr5:138855209-138855289 ( 71) TTACGCAA 1 chr3:45429606-45429686 ( 38) TTACGCAA 1 chr3:25825755-25825835 ( 73) TTACGCAA 1 chr14:92465684-92465764 ( 35) TTACGCAA 1 chr1:234737513-234737593 ( 45) TTACGCAA 1 chr9:32554272-32554352 ( 52) TTACGCAA 1 chr3:15329167-15329247 ( 57) TTACGCAA 1 chr6:136822795-136822875 ( 28) TTACGCAA 1 chr1:110575106-110575186 ( 28) TTACGCAA 1 chr10:22013700-22013780 ( 23) TTACGCAA 1 chr5:142431277-142431357 ( 25) TTACGCAA 1 chr5:163781309-163781389 ( 22) TTGCGTAA 1 chr1:109189611-109189691 ( 27) TTGCGTAA 1 chr3:177904595-177904675 ( 60) TTGCGTAA 1 chr1:186257295-186257375 ( 29) TTGCGTAA 1 chr12:48745036-48745116 ( 22) TTGCGTAA 1 chr1:234806859-234806939 ( 32) TTGCGTAA 1 chr2:24731900-24731980 ( 54) TTGCGTAA 1 chr5:85263644-85263724 ( 58) TTGCGTAA 1 chr2:170873960-170874040 ( 45) TTGCGTAA 1 chr4:113034329-113034409 ( 48) TTGCGTAA 1 chr14:100543189-10054326 ( 15) TTGCGTAA 1 chr9:136989004-136989084 ( 64) TTGCGTAA 1 chr4:693292-693372 ( 26) TTGCGTAA 1 chr4:8443376-8443456 ( 33) TTGCGTAA 1 chr6:88441669-88441749 ( 34) TTGCGTAA 1 chr7:88518149-88518229 ( 17) TTGCGTAA 1 chr12:27702839-27702919 ( 26) TTGCGTAA 1 chr6:27857200-27857280 ( 20) TTGTGCAA 1 chr10:82258691-82258771 ( 31) TTGTGCAA 1 chr12:121581753-12158183 ( 8) TTGTGCAA 1 chr6:135516741-135516821 ( 67) TTGTGCAA 1 chr5:32391197-32391277 ( 24) TTGTGCAA 1 chr12:93638077-93638157 ( 36) TTGTGCAA 1 chr2:58828349-58828429 ( 14) TTGTGCAA 1 chr4:103746472-103746552 ( 9) TTGTGCAA 1 chr6:27569503-27569583 ( 51) TTGTGCAA 1 chr1:145083620-145083700 ( 46) TTGTGCAA 1 chr2:175010640-175010720 ( 44) TTGTGCAA 1 chr3:20102501-20102581 ( 47) TTGTGCAA 1 chr2:68989400-68989480 ( 48) TTGTGCAA 1 chr10:94607128-94607208 ( 25) TTGCACAA 1 chr4:82327144-82327224 ( 31) TTGCACAA 1 chr1:116674590-116674670 ( 32) TTGCACAA 1 chr17:58460869-58460949 ( 49) TTGCACAA 1 chr3:5168455-5168535 ( 48) TTGCACAA 1 chr14:74409946-74410026 ( 21) TTGCACAA 1 chr2:171600890-171600970 ( 16) TTGCACAA 1 chr2:202271207-202271287 ( 50) TTGCACAA 1 chr19:52268023-52268103 ( 30) TTGCACAA 1 chr3:5023652-5023732 ( 42) TTGCACAA 1 chr15:41982173-41982253 ( 26) TTGCACAA 1 chr1:230996512-230996592 ( 47) TTGCACAA 1 chr2:178029469-178029549 ( 15) TGGCGCCA 1 chr7:75496601-75496681 ( 63) TGACGCAA 1 chr7:134047827-134047907 ( 32) TGACGCAA 1 chr4:123741342-123741422 ( 48) TGACGCAA 1 chr21:40635503-40635583 ( 30) TGACGCAA 1 chr21:46388160-46388240 ( 69) TGACGCAA 1 chr7:156452081-156452161 ( 49) TTGCGTCA 1 chr2:208176416-208176496 ( 67) TTGCGTCA 1 chr1:168515411-168515491 ( 25) TTACGTAA 1 chr10:23801456-23801536 ( 42) TTGCGTCA 1 chr20:43664942-43665022 ( 26) TTGTGCCA 1 chr8:20058441-20058521 ( 4) TTATGCAA 1 chr2:157257965-157258045 ( 16) TTACACAA 1 chr11:93141128-93141208 ( 14) TTGCACCA 1 chr4:85618514-85618594 ( 32) TGACGTAA 1 chr5:142721529-142721609 ( 18) TGATGCAA 1 chr11:34393226-34393306 ( 38) TGATGCAA 1 chr11:64334195-64334275 ( 36) TGATGCAA 1 chr10:70977086-70977166 ( 43) TGATGCAA 1 chr5:126011955-126012035 ( 62) TGATGCAA 1 chr1:148523247-148523327 ( 60) TGATGCAA 1 chr12:46951873-46951953 ( 54) TGATGCAA 1 chr1:160078786-160078866 ( 58) TGATGCAA 1 chr16:22303365-22303445 ( 12) TGATGCAA 1 chr15:36626298-36626378 ( 30) TGATGCAA 1 chr5:71578049-71578129 ( 27) TGATGCAA 1 chr2:209117771-209117851 ( 52) TGATGCAA 1 chr13:96408545-96408625 ( 41) TGATGCAA 1 chr2:178284175-178284255 ( 18) TGATGCAA 1 chr9:101192108-101192188 ( 1) TGATGCAA 1 chr19:42514626-42514706 ( 35) TGATGCAA 1 chr1:180023280-180023360 ( 26) TGATGCAA 1 chr7:134298736-134298816 ( 40) TGATGCAA 1 chr3:32187175-32187255 ( 20) TGATGCAA 1 chr1:61586792-61586872 ( 20) TGATGCAA 1 chr10:106109474-10610955 ( 25) TGATGCAA 1 chr7:135133596-135133676 ( 44) TGATGCAA 1 chr17:61072341-61072421 ( 23) TGATGCAA 1 chr17:32674263-32674343 ( 28) TGATGCAA 1 chr2:24476375-24476455 ( 48) TGATGCAA 1 chr6:36258517-36258597 ( 21) TGATGCAA 1 chr1:194267334-194267414 ( 23) TGATGCAA 1 chr10:22768416-22768496 ( 46) TGATGCAA 1 chr15:57545446-57545526 ( 49) TGATGCAA 1 chr1:90288747-90288827 ( 39) TGATGCAA 1 chr10:15745579-15745659 ( 27) TGATGCAA 1 chr12:56319317-56319397 ( 26) TGATGCAA 1 chr14:24163902-24163982 ( 18) TGATGCAA 1 chr9:103160358-103160438 ( 58) TGATGCAA 1 chr2:55327174-55327254 ( 33) TGATGCAA 1 chr5:138038286-138038366 ( 55) TGATGCAA 1 chr11:71658749-71658829 ( 47) TGATGCAA 1 chr2:101655209-101655289 ( 24) TGATGCAA 1 chr6:36617765-36617845 ( 27) TGATGCAA 1 chr3:195782795-195782875 ( 36) TGATGCAA 1 chr1:243376470-243376550 ( 61) TGATGCAA 1 chr6:53494895-53494975 ( 35) TGATGCAA 1 chr8:16423319-16423399 ( 38) TGATGCAA 1 chr5:145572370-145572450 ( 19) TGATGCAA 1 chr10:127093610-12709369 ( 56) TGATGCAA 1 chr1:193080861-193080941 ( 45) TGATGCAA 1 chr6:160522094-160522174 ( 71) TGATGCAA 1 chr2:242218985-242219065 ( 57) TGATGCAA 1 chr6:15368564-15368644 ( 26) TGATGCAA 1 chr19:30444434-30444514 ( 51) TGATGCAA 1 chr6:26304053-26304133 ( 45) TGACACAA 1 chr1:113614835-113614915 ( 27) TTGCATCA 1 chr4:7001022-7001102 ( 22) TTGCATCA 1 chr19:19513978-19514058 ( 26) TTGCATCA 1 chr3:5239442-5239522 ( 23) TTGCATCA 1 chr4:26624737-26624817 ( 27) TTGCATCA 1 chr7:135184758-135184838 ( 49) TTGCATCA 1 chr8:39964913-39964993 ( 23) TTGCATCA 1 chr16:8623079-8623159 ( 25) TTGCATCA 1 chr9:128005740-128005820 ( 72) TTGCATCA 1 chr2:135814542-135814622 ( 23) TTGCATCA 1 chr4:99153529-99153609 ( 27) TTGCATCA 1 chr2:68647574-68647654 ( 19) TTGCATCA 1 chr10:69550868-69550948 ( 34) TTGCATCA 1 chr3:157019179-157019259 ( 26) TTGCATCA 1 chr2:12596674-12596754 ( 61) TTGCATCA 1 chr7:127907265-127907345 ( 19) TTGCATCA 1 chr1:118208377-118208457 ( 22) TTGCATCA 1 chr8:117889997-117890077 ( 45) TTGCATCA 1 chr1:209847391-209847471 ( 28) TTGCATCA 1 chr5:10501910-10501990 ( 11) TTGCATCA 1 chr4:9850077-9850157 ( 46) TTGCATCA 1 chrX:65269052-65269132 ( 59) TTGCATCA 1 chr10:65462999-65463079 ( 32) TTGCATCA 1 chr11:63456885-63456965 ( 28) TTGCATCA 1 chr14:103828310-10382839 ( 47) TTGCATCA 1 chr8:82643717-82643797 ( 59) TTGCATCA 1 chrX:118340340-118340420 ( 23) TTGCATCA 1 chr6:125335680-125335760 ( 18) TTGCATCA 1 chr18:1438621-1438701 ( 32) TTGCATCA 1 chr15:67973048-67973128 ( 41) TTGCATCA 1 chr17:57773492-57773572 ( 46) TTGCATCA 1 chr7:56101401-56101481 ( 26) TTGCATCA 1 chr9:127728663-127728743 ( 60) TTGCATCA 1 chr15:66662589-66662669 ( 73) TTGCATCA 1 chr5:118658875-118658955 ( 51) TTGCATCA 1 chr4:186167772-186167852 ( 50) TTGCATCA 1 chr1:100788584-100788664 ( 53) TTGCATCA 1 chr1:221490011-221490091 ( 45) TTGCATCA 1 chr15:43834122-43834202 ( 29) TTGCATCA 1 chr11:38788460-38788540 ( 18) TTGCATCA 1 chr6:135410086-135410166 ( 41) TTGCATCA 1 chr5:145061367-145061447 ( 46) TTGCATCA 1 chr5:30101200-30101280 ( 52) TTGCATCA 1 chrX:151065776-151065856 ( 35) TTGCATCA 1 chr1:150973059-150973139 ( 17) TTGCATCA 1 chr4:169332904-169332984 ( 25) TTGCATCA 1 chr18:29291529-29291609 ( 33) TTGCATCA 1 chr5:138340511-138340591 ( 47) TTGCATCA 1 chr10:93389605-93389685 ( 9) TTGAGCAA 1 chr21:38743240-38743320 ( 38) TTGGGCAA 1 chr9:94181668-94181748 ( 25) TTGCTCAA 1 chr12:131069172-13106925 ( 62) TTACATCA 1 chrX:16826217-16826297 ( 46) TTGCGAAA 1 chr16:89873134-89873214 ( 52) TTTCGCAA 1 chr1:150943829-150943909 ( 28) TTGCGAAA 1 chr15:57263416-57263496 ( 23) TCGCGCAA 1 chr6:136547247-136547327 ( 28) TTAAGCAA 1 chr5:154028417-154028497 ( 16) TGTCGCAA 1 chr2:183897062-183897142 ( 39) TTGCTTAA 1 chr3:142569708-142569788 ( 68) TTGCTTAA 1 chr3:125072116-125072196 ( 65) TGAGGCAA 1 chr1:147144003-147144083 ( 20) TTGAACCA 1 chr22:22378237-22378317 ( 33) TGGAGTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCGCAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.50673 E= 1.7e-261 -1457 -1457 -1457 180 -1457 -574 29 136 12 -1457 171 -513 -410 169 -467 -11 -8 -1457 178 -454 -510 164 -1457 8 143 9 -1457 -1457 182 -1457 -1457 -1457 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCGCAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 243 E= 1.7e-261 0.000000 0.000000 0.000000 1.000000 0.000000 0.004115 0.255144 0.740741 0.308642 0.000000 0.683128 0.008230 0.016461 0.707819 0.008230 0.267490 0.267490 0.000000 0.720165 0.012346 0.008230 0.687243 0.000000 0.304527 0.765432 0.234568 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCGCAA MEME-1 regular expression -------------------------------------------------------------------------------- T[TG][GA][CT][GA][CT][AC]A -------------------------------------------------------------------------------- Time 4.82 secs. ******************************************************************************** ******************************************************************************** MOTIF TCACTGCA MEME-2 width = 8 sites = 17 llr = 173 E-value = 2.5e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCACTGCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::9:::1a pos.-specific C 1a1a::9: probability G :::::a:: matrix T 9:::a::: bits 2.3 * * * 2.0 * * * 1.8 * *** * 1.6 ** ***** Relative 1.4 ******** Entropy 1.1 ******** (14.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCACTGCA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACTGCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:27857200-27857280 35 1.48e-05 caatcatagt tcactgca tccttgaact chr6:26304053-26304133 60 1.48e-05 caatcgagag tcactgca acttccttga chr1:179263698-179263778 41 1.48e-05 caatctcggc tcactgca acctctgcct chr6:27716594-27716674 43 1.48e-05 caatctctgc tcactgca acctccacct chr1:28561890-28561970 32 1.48e-05 caatctcggc tcactgca acctccgcct chr9:131622871-131622951 46 1.48e-05 caatctcggc tcactgca agctccgcct chr2:101655209-101655289 7 1.48e-05 GCACAA TCACTGCA GAAAGGAGAT chr17:73077149-73077229 47 1.48e-05 agagattaca tcactgca ctccagcttg chr18:19279648-19279728 66 1.48e-05 caatcttggc tcactgca acctccg chr1:193080861-193080941 60 1.48e-05 caatcacagc tcactgca gcctcgacct chr1:154997835-154997915 42 1.48e-05 caatctcggc tcactgca acctccacct chr19:13908952-13909032 73 1.48e-05 caatcataac tcactgca chr14:74409946-74410026 8 2.63e-05 tttttca tccctgca accagttgca chr6:15368564-15368644 57 2.63e-05 TTCCTCCCCA TCCCTGCA AAGAAACAGT chr1:113614835-113614915 65 4.53e-05 aatgtcacag tcactgaa ggagcaaa chrX:118340340-118340420 47 4.53e-05 ATCTGCCTGG TCACTGAA GCCTAGACTG chr6:136547247-136547327 3 5.66e-05 TC CCACTGCA GTGTTGAAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACTGCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:27857200-27857280 1.5e-05 34_[+2]_38 chr6:26304053-26304133 1.5e-05 59_[+2]_13 chr1:179263698-179263778 1.5e-05 40_[+2]_32 chr6:27716594-27716674 1.5e-05 42_[+2]_30 chr1:28561890-28561970 1.5e-05 31_[+2]_41 chr9:131622871-131622951 1.5e-05 45_[+2]_27 chr2:101655209-101655289 1.5e-05 6_[+2]_66 chr17:73077149-73077229 1.5e-05 46_[+2]_26 chr18:19279648-19279728 1.5e-05 65_[+2]_7 chr1:193080861-193080941 1.5e-05 59_[+2]_13 chr1:154997835-154997915 1.5e-05 41_[+2]_31 chr19:13908952-13909032 1.5e-05 72_[+2] chr14:74409946-74410026 2.6e-05 7_[+2]_65 chr6:15368564-15368644 2.6e-05 56_[+2]_16 chr1:113614835-113614915 4.5e-05 64_[+2]_8 chrX:118340340-118340420 4.5e-05 46_[+2]_26 chr6:136547247-136547327 5.7e-05 2_[+2]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACTGCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCACTGCA width=8 seqs=17 chr6:27857200-27857280 ( 35) TCACTGCA 1 chr6:26304053-26304133 ( 60) TCACTGCA 1 chr1:179263698-179263778 ( 41) TCACTGCA 1 chr6:27716594-27716674 ( 43) TCACTGCA 1 chr1:28561890-28561970 ( 32) TCACTGCA 1 chr9:131622871-131622951 ( 46) TCACTGCA 1 chr2:101655209-101655289 ( 7) TCACTGCA 1 chr17:73077149-73077229 ( 47) TCACTGCA 1 chr18:19279648-19279728 ( 66) TCACTGCA 1 chr1:193080861-193080941 ( 60) TCACTGCA 1 chr1:154997835-154997915 ( 42) TCACTGCA 1 chr19:13908952-13909032 ( 73) TCACTGCA 1 chr14:74409946-74410026 ( 8) TCCCTGCA 1 chr6:15368564-15368644 ( 57) TCCCTGCA 1 chr1:113614835-113614915 ( 65) TCACTGAA 1 chrX:118340340-118340420 ( 47) TCACTGAA 1 chr6:136547247-136547327 ( 3) CCACTGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACTGCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1364 E= 2.5e-004 -1073 -190 -1073 171 -1073 219 -1073 -1073 164 -90 -1073 -1073 -1073 219 -1073 -1073 -1073 -1073 -1073 180 -1073 -1073 226 -1073 -127 200 -1073 -1073 182 -1073 -1073 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACTGCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 2.5e-004 0.000000 0.058824 0.000000 0.941176 0.000000 1.000000 0.000000 0.000000 0.882353 0.117647 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.117647 0.882353 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACTGCA MEME-2 regular expression -------------------------------------------------------------------------------- TCACTGCA -------------------------------------------------------------------------------- Time 8.10 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCTGGAG MEME-3 width = 8 sites = 17 llr = 168 E-value = 2.7e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCTGGAG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1:1:2:9: pos.-specific C ::9::1:: probability G 9a::89:a matrix T 1::a::1: bits 2.3 * * 2.0 * * * 1.8 * * * * 1.6 **** *** Relative 1.4 ******** Entropy 1.1 ******** (14.3 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGCTGGAG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTGGAG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr10:94607128-94607208 63 7.15e-06 GTGGGGAGGA GGCTGGAG GTAGGTTTCA chr6:27857200-27857280 7 7.15e-06 caccca ggctggag tgcaattgtg chr7:75496601-75496681 50 7.15e-06 ctgtcaccca ggctggag tgcagtgacg chr1:179263698-179263778 13 7.15e-06 tgtgtcgcaa ggctggag tgcagtggcg chr1:28561890-28561970 4 7.15e-06 cca ggctggag tgcagttgcg chr18:19279648-19279728 38 7.15e-06 ttgttgccca ggctggag tgcaattgcg chr1:154997835-154997915 14 7.15e-06 tctatcgcca ggctggag tgcagttgcg chr21:38743240-38743320 55 1.68e-05 ATTTTCTGAT GGCTAGAG AGGTGGTAAT chr3:45429606-45429686 28 1.68e-05 CCCGCCCCAG GGCTAGAG GATTACGCAA chr3:195782795-195782875 23 1.68e-05 ctgtcaccca ggctagag tgcagtgatg chr15:93345381-93345461 24 1.68e-05 ttgtcaccca ggctagag tgcagttgcg chr3:195848984-195849064 38 2.60e-05 GCAAGACTCA GGATGGAG TGTGTTGTCT chr14:103828310-10382839 24 2.60e-05 atcctaagca ggatggag caagctagca chr11:64334195-64334275 9 4.08e-05 TGTTGTTG GGCTGGTG TTGTCCGATG chr22:22378237-22378317 70 4.08e-05 gacTTAGGGT GGCTGCAG AGC chr1:234737513-234737593 24 6.04e-05 TCTGTAGAGC TGCTGGAG GAGGCTCTTT chr6:125335680-125335760 35 6.04e-05 atctcactgt agctggag taatcagcct -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTGGAG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:94607128-94607208 7.2e-06 62_[+3]_10 chr6:27857200-27857280 7.2e-06 6_[+3]_66 chr7:75496601-75496681 7.2e-06 49_[+3]_23 chr1:179263698-179263778 7.2e-06 12_[+3]_60 chr1:28561890-28561970 7.2e-06 3_[+3]_69 chr18:19279648-19279728 7.2e-06 37_[+3]_35 chr1:154997835-154997915 7.2e-06 13_[+3]_59 chr21:38743240-38743320 1.7e-05 54_[+3]_18 chr3:45429606-45429686 1.7e-05 27_[+3]_45 chr3:195782795-195782875 1.7e-05 22_[+3]_50 chr15:93345381-93345461 1.7e-05 23_[+3]_49 chr3:195848984-195849064 2.6e-05 37_[+3]_35 chr14:103828310-10382839 2.6e-05 23_[+3]_49 chr11:64334195-64334275 4.1e-05 8_[+3]_64 chr22:22378237-22378317 4.1e-05 69_[+3]_3 chr1:234737513-234737593 6e-05 23_[+3]_49 chr6:125335680-125335760 6e-05 34_[+3]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTGGAG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCTGGAG width=8 seqs=17 chr10:94607128-94607208 ( 63) GGCTGGAG 1 chr6:27857200-27857280 ( 7) GGCTGGAG 1 chr7:75496601-75496681 ( 50) GGCTGGAG 1 chr1:179263698-179263778 ( 13) GGCTGGAG 1 chr1:28561890-28561970 ( 4) GGCTGGAG 1 chr18:19279648-19279728 ( 38) GGCTGGAG 1 chr1:154997835-154997915 ( 14) GGCTGGAG 1 chr21:38743240-38743320 ( 55) GGCTAGAG 1 chr3:45429606-45429686 ( 28) GGCTAGAG 1 chr3:195782795-195782875 ( 23) GGCTAGAG 1 chr15:93345381-93345461 ( 24) GGCTAGAG 1 chr3:195848984-195849064 ( 38) GGATGGAG 1 chr14:103828310-10382839 ( 24) GGATGGAG 1 chr11:64334195-64334275 ( 9) GGCTGGTG 1 chr22:22378237-22378317 ( 70) GGCTGCAG 1 chr1:234737513-234737593 ( 24) TGCTGGAG 1 chr6:125335680-125335760 ( 35) AGCTGGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTGGAG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.4326 E= 2.7e-003 -227 -1073 208 -229 -1073 -1073 226 -1073 -127 200 -1073 -1073 -1073 -1073 -1073 180 -27 -1073 187 -1073 -1073 -190 217 -1073 173 -1073 -1073 -229 -1073 -1073 226 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTGGAG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 2.7e-003 0.058824 0.000000 0.882353 0.058824 0.000000 0.000000 1.000000 0.000000 0.117647 0.882353 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.235294 0.000000 0.764706 0.000000 0.000000 0.058824 0.941176 0.000000 0.941176 0.000000 0.000000 0.058824 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCTGGAG MEME-3 regular expression -------------------------------------------------------------------------------- GGCT[GA]GAG -------------------------------------------------------------------------------- Time 11.35 secs. ******************************************************************************** ******************************************************************************** MOTIF TTKCATCA MEME-4 width = 8 sites = 20 llr = 192 E-value = 1.7e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTKCATCA MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::a::a pos.-specific C :::a::a: probability G ::6::2:: matrix T aa5::8:: bits 2.3 * * 2.0 * * 1.8 ** ** ** 1.6 ** ** ** Relative 1.4 ** ** ** Entropy 1.1 ******** (13.8 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTGCATCA consensus T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKCATCA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr9:128005740-128005820 9 1.94e-05 TACAGAGG TTGCATCA TGCATCTCTT chr7:134047827-134047907 15 1.94e-05 CTTCTATTTC TTGCATCA GCCCCTGGCT chr4:85618514-85618594 53 1.94e-05 TTTGCTGTTA TTGCATCA TTTAACAGAA chr19:52268023-52268103 51 1.94e-05 TCCTTCCTTG TTGCATCA ACAttttttt chr1:194267334-194267414 44 1.94e-05 ACAGGGAGCA TTGCATCA GAATTGTGTA chr5:121312860-121312940 64 1.94e-05 AATGGAATGG TTGCATCA TAGAAAGCC chr5:30101200-30101280 39 1.94e-05 actcctgtga ttgcatca tatgattgca chr7:88518149-88518229 49 1.94e-05 ttacaattga ttgcatca cccaggtagt chr1:16193536-16193616 56 4.60e-05 tgtagaatag tttcatca ccccagaatg chr6:136547247-136547327 49 4.60e-05 TATCCCTGGC TTTCATCA TTGAATTTCA chr10:69550868-69550948 14 4.60e-05 TTGTGAGACA TTTCATCA TTTTCTCAGT chr3:157019179-157019259 3 4.60e-05 tg tttcatca atctcaacct chr12:121581753-12158183 43 4.60e-05 tttcagaaca tttcatca gcccagtaag chr3:5023652-5023732 69 4.60e-05 ACCACTGAAG TTTCATCA TTCG chr2:183897062-183897142 60 4.60e-05 catcagatga tttcatca ttgtgtgaac chr18:29291529-29291609 53 4.60e-05 TACCATACAA TTTCATCA TCAAGTTTAG chr3:5239442-5239522 12 6.01e-05 TGGATGCAAC TTGCAGCA TTATTGCATC chr8:82643717-82643797 48 6.01e-05 TGACACAGGT TTGCAGCA GTATTGCATC chr9:135893974-135894054 10 6.01e-05 ttcaaaata ttgcagca cagttcaatg chr9:33676363-33676443 67 7.94e-05 TCATAATGTC TTTCAGCA CAAAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKCATCA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:128005740-128005820 1.9e-05 8_[+4]_64 chr7:134047827-134047907 1.9e-05 14_[+4]_58 chr4:85618514-85618594 1.9e-05 52_[+4]_20 chr19:52268023-52268103 1.9e-05 50_[+4]_22 chr1:194267334-194267414 1.9e-05 43_[+4]_29 chr5:121312860-121312940 1.9e-05 63_[+4]_9 chr5:30101200-30101280 1.9e-05 38_[+4]_34 chr7:88518149-88518229 1.9e-05 48_[+4]_24 chr1:16193536-16193616 4.6e-05 55_[+4]_17 chr6:136547247-136547327 4.6e-05 48_[+4]_24 chr10:69550868-69550948 4.6e-05 13_[+4]_59 chr3:157019179-157019259 4.6e-05 2_[+4]_70 chr12:121581753-12158183 4.6e-05 42_[+4]_30 chr3:5023652-5023732 4.6e-05 68_[+4]_4 chr2:183897062-183897142 4.6e-05 59_[+4]_13 chr18:29291529-29291609 4.6e-05 52_[+4]_20 chr3:5239442-5239522 6e-05 11_[+4]_61 chr8:82643717-82643797 6e-05 47_[+4]_25 chr9:135893974-135894054 6e-05 9_[+4]_63 chr9:33676363-33676443 7.9e-05 66_[+4]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKCATCA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTKCATCA width=8 seqs=20 chr9:128005740-128005820 ( 9) TTGCATCA 1 chr7:134047827-134047907 ( 15) TTGCATCA 1 chr4:85618514-85618594 ( 53) TTGCATCA 1 chr19:52268023-52268103 ( 51) TTGCATCA 1 chr1:194267334-194267414 ( 44) TTGCATCA 1 chr5:121312860-121312940 ( 64) TTGCATCA 1 chr5:30101200-30101280 ( 39) TTGCATCA 1 chr7:88518149-88518229 ( 49) TTGCATCA 1 chr1:16193536-16193616 ( 56) TTTCATCA 1 chr6:136547247-136547327 ( 49) TTTCATCA 1 chr10:69550868-69550948 ( 14) TTTCATCA 1 chr3:157019179-157019259 ( 3) TTTCATCA 1 chr12:121581753-12158183 ( 43) TTTCATCA 1 chr3:5023652-5023732 ( 69) TTTCATCA 1 chr2:183897062-183897142 ( 60) TTTCATCA 1 chr18:29291529-29291609 ( 53) TTTCATCA 1 chr3:5239442-5239522 ( 12) TTGCAGCA 1 chr8:82643717-82643797 ( 48) TTGCAGCA 1 chr9:135893974-135894054 ( 10) TTGCAGCA 1 chr9:33676363-33676443 ( 67) TTTCAGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKCATCA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.7763 E= 1.7e-002 -1097 -1097 -1097 180 -1097 -1097 -1097 180 -1097 -1097 139 65 -1097 219 -1097 -1097 182 -1097 -1097 -1097 -1097 -1097 -6 148 -1097 219 -1097 -1097 182 -1097 -1097 -1097 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKCATCA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 1.7e-002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.550000 0.450000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.800000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKCATCA MEME-4 regular expression -------------------------------------------------------------------------------- TT[GT]CA[TG]CA -------------------------------------------------------------------------------- Time 14.57 secs. ******************************************************************************** ******************************************************************************** MOTIF CTCCAGCC MEME-5 width = 8 sites = 11 llr = 114 E-value = 2.0e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTCCAGCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::a2:: pos.-specific C a:aa:1aa probability G :::::5:: matrix T :a:::2:: bits 2.3 * ** ** 2.0 * ** ** 1.8 ***** ** 1.6 ***** ** Relative 1.4 ***** ** Entropy 1.1 ***** ** (14.9 bits) 0.9 ***** ** 0.7 ***** ** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTCCAGCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCAGCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:211564331-211564411 55 8.78e-06 cgcaactgcg ctccagcc tggttgacag chr6:27569503-27569583 64 8.78e-06 TGCAATAATA CTCCAGCC TATCGCATA chr6:53494895-53494975 72 8.78e-06 GGGTGAATCT CTCCAGCC A chr17:25739323-25739403 56 8.78e-06 cgcaactgca ctccagcc tgggcaatag chr1:31584214-31584294 44 8.78e-06 cacaactgca ctccagcc aagattgcgc chr5:140099723-140099803 49 8.78e-06 cgcaactgca ctccagcc tgggcgacag chr2:157257965-157258045 71 3.28e-05 ACAACTCTCC CTCCAACC CC chr5:32391197-32391277 67 3.28e-05 cgctgtccag ctccatcc caccta chr10:23801456-23801536 55 3.28e-05 cgtcatcctg ctccatcc tgctcagggt chr12:60567528-60567608 71 3.28e-05 tcaagcagtt ctccaacc tc chr1:150943829-150943909 1 4.20e-05 . CTCCACCC CCACCCACCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCAGCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:211564331-211564411 8.8e-06 54_[+5]_18 chr6:27569503-27569583 8.8e-06 63_[+5]_9 chr6:53494895-53494975 8.8e-06 71_[+5]_1 chr17:25739323-25739403 8.8e-06 55_[+5]_17 chr1:31584214-31584294 8.8e-06 43_[+5]_29 chr5:140099723-140099803 8.8e-06 48_[+5]_24 chr2:157257965-157258045 3.3e-05 70_[+5]_2 chr5:32391197-32391277 3.3e-05 66_[+5]_6 chr10:23801456-23801536 3.3e-05 54_[+5]_18 chr12:60567528-60567608 3.3e-05 70_[+5]_2 chr1:150943829-150943909 4.2e-05 [+5]_72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCAGCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTCCAGCC width=8 seqs=11 chr1:211564331-211564411 ( 55) CTCCAGCC 1 chr6:27569503-27569583 ( 64) CTCCAGCC 1 chr6:53494895-53494975 ( 72) CTCCAGCC 1 chr17:25739323-25739403 ( 56) CTCCAGCC 1 chr1:31584214-31584294 ( 44) CTCCAGCC 1 chr5:140099723-140099803 ( 49) CTCCAGCC 1 chr2:157257965-157258045 ( 71) CTCCAACC 1 chr5:32391197-32391277 ( 67) CTCCATCC 1 chr10:23801456-23801536 ( 55) CTCCATCC 1 chr12:60567528-60567608 ( 71) CTCCAACC 1 chr1:150943829-150943909 ( 1) CTCCACCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCAGCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.0506 E= 2.0e+002 -1010 219 -1010 -1010 -1010 -1010 -1010 180 -1010 219 -1010 -1010 -1010 219 -1010 -1010 182 -1010 -1010 -1010 -64 -127 138 -66 -1010 219 -1010 -1010 -1010 219 -1010 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCAGCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 2.0e+002 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.181818 0.090909 0.545455 0.181818 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCAGCC MEME-5 regular expression -------------------------------------------------------------------------------- CTCCAGCC -------------------------------------------------------------------------------- Time 17.76 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:25017165-25017245 9.33e-03 25_[+1(1.40e-05)]_47 chr12:122682866-12268294 6.13e-02 39_[+1(1.40e-05)]_33 chr3:151818434-151818514 3.14e-02 51_[+1(1.40e-05)]_21 chr19:13908952-13909032 5.30e-04 49_[+1(1.40e-05)]_15_[+2(1.48e-05)] chr3:4946663-4946743 6.72e-03 26_[+1(1.40e-05)]_46 chr3:142569708-142569788 3.60e-01 80 chr11:67297060-67297140 1.36e-02 29_[+1(1.40e-05)]_43 chr2:68989400-68989480 1.93e-02 47_[+1(9.09e-05)]_25 chr1:150943829-150943909 7.99e-03 [+5(4.20e-05)]_72 chr7:106554632-106554712 1.25e-02 25_[+1(1.40e-05)]_47 chr3:37066677-37066757 9.53e-03 56_[+1(1.40e-05)]_16 chr1:230996512-230996592 7.04e-03 80 chr5:36373671-36373751 2.83e-03 27_[+1(1.40e-05)]_45 chr1:28572990-28573070 2.71e-02 38_[+1(1.40e-05)]_34 chr5:140099723-140099803 3.02e-05 35_[+1(1.40e-05)]_5_[+5(8.78e-06)]_\ 24 chr5:138340511-138340591 1.59e-02 46_[+4(1.94e-05)]_26 chr12:27702839-27702919 6.70e-02 25_[+1(7.26e-05)]_47 chr9:115293268-115293348 3.95e-02 34_[+1(1.40e-05)]_38 chr1:197153457-197153537 1.15e-01 40_[+1(1.40e-05)]_32 chr15:41982173-41982253 1.51e-03 80 chr18:29291529-29291609 1.01e-02 32_[+4(1.94e-05)]_12_[+4(4.60e-05)]_\ 20 chr4:169332904-169332984 2.46e-04 24_[+4(1.94e-05)]_48 chr7:88518149-88518229 9.40e-04 16_[+1(7.26e-05)]_24_[+4(1.94e-05)]_\ 24 chr1:150973059-150973139 5.96e-06 16_[+4(1.94e-05)]_56 chrX:151065776-151065856 1.94e-03 34_[+4(1.94e-05)]_38 chr1:234762929-234763009 1.23e-01 19_[+1(1.40e-05)]_53 chr5:142431277-142431357 7.68e-02 24_[+1(5.42e-05)]_48 chr1:121267294-121267374 7.67e-02 48_[+1(1.40e-05)]_24 chr21:36312150-36312230 4.04e-02 49_[+1(1.40e-05)]_23 chr12:60567528-60567608 9.04e-05 21_[+1(1.40e-05)]_41_[+5(3.28e-05)]_\ 2 chr1:167461281-167461361 4.27e-03 12_[+1(1.40e-05)]_60 chr10:22013700-22013780 4.43e-02 22_[+1(5.42e-05)]_50 chr21:46388160-46388240 2.84e-02 80 chr6:144900236-144900316 2.82e-02 28_[+1(1.40e-05)]_44 chr15:93345381-93345461 1.09e-05 23_[+3(1.68e-05)]_5_[+1(1.40e-05)]_\ 36 chr11:93141128-93141208 1.68e-04 80 chr12:123225109-12322518 2.15e-02 32_[+1(1.40e-05)]_40 chr5:30101200-30101280 1.09e-02 38_[+4(1.94e-05)]_5_[+4(1.94e-05)]_\ 21 chr1:31584214-31584294 5.37e-05 43_[+5(8.78e-06)]_4_[+1(1.40e-05)]_\ 17 chr15:40129810-40129890 8.43e-02 45_[+1(1.40e-05)]_27 chr1:154997835-154997915 3.22e-07 13_[+3(7.15e-06)]_5_[+1(1.40e-05)]_\ 7_[+2(1.48e-05)]_31 chr1:110575106-110575186 1.59e-01 27_[+1(5.42e-05)]_45 chr6:88441669-88441749 3.51e-02 33_[+1(7.26e-05)]_39 chr20:54824763-54824843 3.73e-02 51_[+1(1.40e-05)]_21 chr4:8443376-8443456 4.18e-02 32_[+1(7.26e-05)]_40 chr19:30444434-30444514 4.76e-02 80 chr15:57263416-57263496 6.05e-02 80 chr6:15368564-15368644 6.17e-04 56_[+2(2.63e-05)]_16 chr1:207811991-207812071 3.72e-03 19_[+1(1.40e-05)]_53 chr5:145061367-145061447 1.36e-02 45_[+4(1.94e-05)]_27 chr3:20102501-20102581 4.19e-02 46_[+1(9.09e-05)]_26 chr3:47497463-47497543 9.90e-02 63_[+1(1.40e-05)]_9 chr6:135410086-135410166 2.98e-03 40_[+4(1.94e-05)]_32 chr12:131069172-13106925 3.31e-02 80 chr2:242218985-242219065 9.08e-02 80 chr11:38788460-38788540 5.17e-03 17_[+4(1.94e-05)]_55 chr8:37010936-37011016 1.25e-02 53_[+1(1.40e-05)]_19 chr4:693292-693372 6.75e-02 25_[+1(7.26e-05)]_47 chr9:135893974-135894054 3.08e-04 9_[+4(6.01e-05)]_31_[+1(1.40e-05)]_\ 24 chr9:136989004-136989084 6.66e-02 63_[+1(7.26e-05)]_9 chr17:25739323-25739403 5.51e-05 42_[+1(1.40e-05)]_5_[+5(8.78e-06)]_\ 17 chr3:4753907-4753987 1.60e-04 36_[+1(1.40e-05)]_36 chr15:43834122-43834202 6.88e-03 28_[+4(1.94e-05)]_44 chr6:160522094-160522174 1.88e-01 80 chr6:20573299-20573379 6.75e-02 51_[+1(1.40e-05)]_21 chr6:136822795-136822875 5.48e-03 27_[+1(5.42e-05)]_45 chr1:221490011-221490091 2.57e-03 44_[+4(1.94e-05)]_28 chr2:175901458-175901538 1.87e-01 80 chr1:193080861-193080941 7.48e-05 59_[+2(1.48e-05)]_13 chr10:127093610-12709369 2.55e-01 80 chr12:48163997-48164077 7.11e-04 22_[+1(1.40e-05)]_50 chr14:100543189-10054326 2.35e-02 14_[+1(7.26e-05)]_58 chr2:216484919-216484999 8.74e-02 15_[+1(1.40e-05)]_57 chr5:145572370-145572450 3.96e-01 80 chr18:19279648-19279728 2.04e-07 37_[+3(7.15e-06)]_5_[+1(1.40e-05)]_\ 7_[+2(1.48e-05)]_7 chr2:175010640-175010720 1.31e-02 43_[+1(9.09e-05)]_29 chr8:16423319-16423399 3.62e-02 80 chr6:14727485-14727565 1.55e-03 49_[+1(1.40e-05)]_23 chr7:98771542-98771622 8.80e-04 22_[+1(1.40e-05)]_50 chr1:100788584-100788664 3.40e-02 52_[+4(1.94e-05)]_20 chr2:183897062-183897142 5.75e-02 59_[+4(4.60e-05)]_13 chr2:119880381-119880461 8.10e-03 57_[+1(1.40e-05)]_15 chr6:53494895-53494975 1.57e-03 71_[+5(8.78e-06)]_1 chr4:186167772-186167852 6.15e-03 49_[+4(1.94e-05)]_23 chr1:243376470-243376550 7.84e-02 80 chr5:118658875-118658955 3.58e-03 50_[+4(1.94e-05)]_22 chr3:195782795-195782875 4.66e-04 22_[+3(1.68e-05)]_50 chr17:73077149-73077229 2.73e-07 46_[+2(1.48e-05)]_7_[+1(1.40e-05)]_\ 11 chr5:121312860-121312940 8.92e-04 47_[+1(1.40e-05)]_8_[+4(1.94e-05)]_\ 9 chr6:36617765-36617845 1.00e-01 80 chr2:101655209-101655289 2.66e-03 6_[+2(1.48e-05)]_66 chr9:126717400-126717480 6.65e-02 53_[+1(1.40e-05)]_19 chr4:113034329-113034409 1.07e-01 47_[+1(7.26e-05)]_25 chr15:66662589-66662669 1.95e-03 72_[+4(1.94e-05)] chr3:15329167-15329247 1.12e-01 56_[+1(5.42e-05)]_16 chr9:127728663-127728743 2.26e-03 59_[+4(1.94e-05)]_13 chr11:71658749-71658829 1.73e-01 80 chr7:56101401-56101481 2.64e-03 25_[+4(1.94e-05)]_47 chr5:89981611-89981691 1.16e-02 24_[+1(1.40e-05)]_48 chr17:57773492-57773572 6.77e-03 45_[+4(1.94e-05)]_27 chr9:33676363-33676443 2.01e-03 25_[+1(1.40e-05)]_33_[+4(7.94e-05)]_\ 6 chr19:11292318-11292398 1.81e-02 45_[+1(1.40e-05)]_27 chr1:145083620-145083700 1.53e-02 45_[+1(9.09e-05)]_27 chr9:32554272-32554352 1.22e-02 51_[+1(5.42e-05)]_21 chr5:138038286-138038366 4.02e-02 80 chr2:55327174-55327254 3.29e-01 80 chr10:72062237-72062317 1.25e-02 59_[+1(1.40e-05)]_13 chr9:103160358-103160438 5.01e-02 80 chr9:131622871-131622951 8.19e-05 30_[+1(1.40e-05)]_7_[+2(1.48e-05)]_\ 27 chr15:67973048-67973128 4.72e-04 40_[+4(1.94e-05)]_32 chr14:24163902-24163982 2.15e-02 80 chr2:170873960-170874040 3.98e-02 44_[+1(7.26e-05)]_28 chr1:30266109-30266189 4.45e-01 80 chr12:56319317-56319397 3.33e-01 80 chr18:1438621-1438701 1.23e-02 31_[+4(1.94e-05)]_41 chr10:15745579-15745659 1.00e-01 80 chr16:89873134-89873214 5.32e-02 80 chr6:27569503-27569583 1.73e-03 50_[+1(9.09e-05)]_5_[+5(8.78e-06)]_\ 9 chr1:90288747-90288827 5.67e-02 80 chr15:57545446-57545526 7.90e-02 80 chr10:22768416-22768496 2.47e-01 80 chr6:125335680-125335760 1.04e-05 17_[+4(1.94e-05)]_9_[+3(6.04e-05)]_\ 38 chr1:194267334-194267414 2.95e-03 8_[+4(1.94e-05)]_27_[+4(1.94e-05)]_\ 29 chr4:103746472-103746552 4.38e-02 8_[+1(9.09e-05)]_64 chrX:118340340-118340420 1.23e-04 22_[+4(1.94e-05)]_16_[+2(4.53e-05)]_\ 26 chr10:23801456-23801536 1.78e-03 54_[+5(3.28e-05)]_18 chr6:36258517-36258597 9.17e-02 80 chr2:24476375-24476455 3.95e-02 80 chr17:32674263-32674343 3.85e-02 80 chr2:58828349-58828429 6.23e-02 13_[+1(9.09e-05)]_59 chr17:61072341-61072421 3.37e-01 80 chr1:211564331-211564411 5.44e-05 41_[+1(1.40e-05)]_5_[+5(8.78e-06)]_\ 18 chr12:93638077-93638157 5.68e-02 35_[+1(9.09e-05)]_37 chr1:28561890-28561970 4.23e-07 3_[+3(7.15e-06)]_5_[+1(1.40e-05)]_7_\ [+2(1.48e-05)]_41 chr8:82643717-82643797 8.38e-03 47_[+4(6.01e-05)]_3_[+4(1.94e-05)]_\ 14 chr7:135133596-135133676 1.11e-01 80 chr10:106109474-10610955 2.28e-01 80 chr8:20058441-20058521 2.42e-01 80 chr1:234737513-234737593 8.70e-03 23_[+3(6.04e-05)]_13_[+1(5.42e-05)]_\ 28 chr6:27716594-27716674 5.70e-05 27_[+1(1.40e-05)]_7_[+2(1.48e-05)]_\ 30 chr14:103828310-10382839 3.14e-04 23_[+3(2.60e-05)]_15_[+4(1.94e-05)]_\ 26 chr5:85263644-85263724 1.46e-01 57_[+1(7.26e-05)]_15 chr5:32391197-32391277 2.70e-03 23_[+1(9.09e-05)]_35_[+5(3.28e-05)]_\ 6 chr11:63456885-63456965 2.27e-03 27_[+4(1.94e-05)]_45 chr2:24731900-24731980 1.65e-01 53_[+1(7.26e-05)]_19 chr3:5023652-5023732 3.31e-04 10_[+2(7.14e-05)]_41_[+2(9.47e-05)]_\ 1_[+4(4.60e-05)]_4 chr14:92465684-92465764 1.30e-01 34_[+1(5.42e-05)]_38 chr1:61586792-61586872 2.64e-01 80 chr1:234806859-234806939 5.86e-03 31_[+1(7.26e-05)]_41 chr16:126343-126423 6.11e-03 50_[+1(1.40e-05)]_22 chr16:9022352-9022432 2.83e-04 43_[+1(1.40e-05)]_29 chr10:65462999-65463079 2.32e-03 31_[+4(1.94e-05)]_41 chr3:32187175-32187255 6.43e-02 80 chr7:134298736-134298816 2.22e-01 80 chrX:65269052-65269132 1.43e-02 58_[+4(1.94e-05)]_14 chr4:9850077-9850157 6.92e-03 45_[+4(1.94e-05)]_27 chr5:10501910-10501990 5.78e-03 10_[+4(1.94e-05)]_62 chr7:77168110-77168190 2.23e-03 23_[+1(1.40e-05)]_49 chr19:52268023-52268103 3.29e-04 50_[+4(1.94e-05)]_22 chr10:93389605-93389685 4.56e-01 80 chr1:180023280-180023360 1.34e-01 80 chr1:168515411-168515491 1.18e-01 80 chr3:32706209-32706289 1.08e-02 16_[+1(1.40e-05)]_56 chr12:48745036-48745116 7.37e-03 21_[+1(7.26e-05)]_51 chr6:135516741-135516821 1.19e-02 66_[+1(9.09e-05)]_6 chr19:42514626-42514706 2.06e-01 80 chrX:132017524-132017604 9.66e-01 80 chr1:209847391-209847471 7.40e-04 27_[+4(1.94e-05)]_45 chr9:101192108-101192188 2.79e-02 80 chr2:178284175-178284255 7.82e-02 80 chr2:208176416-208176496 1.73e-02 80 chr4:85618514-85618594 1.14e-02 52_[+4(1.94e-05)]_20 chr12:121581753-12158183 2.89e-03 7_[+1(9.09e-05)]_27_[+4(4.60e-05)]_\ 30 chr8:117889997-117890077 7.91e-04 44_[+4(1.94e-05)]_28 chr13:96408545-96408625 4.43e-02 80 chr2:202271207-202271287 2.28e-02 80 chr2:171600890-171600970 5.44e-02 80 chr1:179263698-179263778 6.70e-07 12_[+3(7.15e-06)]_5_[+1(2.42e-05)]_\ 7_[+2(1.48e-05)]_32 chr3:195848984-195849064 1.51e-03 23_[+1(1.40e-05)]_6_[+3(2.60e-05)]_\ 35 chr1:118208377-118208457 3.82e-03 21_[+4(1.94e-05)]_51 chr1:186257295-186257375 1.13e-01 28_[+1(7.26e-05)]_44 chr2:209117771-209117851 1.22e-01 80 chr14:74409946-74410026 1.85e-04 7_[+2(2.63e-05)]_65 chr5:71578049-71578129 7.54e-02 80 chr21:40635503-40635583 1.65e-01 80 chr6:7661763-7661843 7.95e-03 38_[+1(1.40e-05)]_34 chr10:82258691-82258771 1.32e-01 30_[+1(9.09e-05)]_42 chr7:127907265-127907345 1.94e-03 18_[+4(1.94e-05)]_54 chr2:12596674-12596754 1.06e-02 60_[+4(1.94e-05)]_12 chr15:36626298-36626378 8.12e-02 80 chr5:72456115-72456195 1.38e-01 80 chr20:43664942-43665022 7.34e-02 80 chr4:123741342-123741422 3.40e-02 80 chr3:177904595-177904675 1.91e-01 59_[+1(7.26e-05)]_13 chr3:157019179-157019259 1.66e-03 2_[+4(4.60e-05)]_15_[+4(1.94e-05)]_\ 47 chr10:69550868-69550948 2.94e-03 13_[+4(4.60e-05)]_12_[+4(1.94e-05)]_\ 39 chr16:22303365-22303445 1.21e-01 80 chr2:68647574-68647654 2.21e-03 18_[+4(1.94e-05)]_54 chr7:134047827-134047907 8.02e-04 14_[+4(1.94e-05)]_58 chr9:94181668-94181748 1.19e-01 80 chr16:11622073-11622153 4.36e-02 23_[+1(1.40e-05)]_49 chr7:75496601-75496681 3.96e-03 49_[+3(7.15e-06)]_23 chr3:5168455-5168535 9.86e-02 80 chr17:58460869-58460949 2.98e-02 80 chr1:160078786-160078866 1.53e-01 80 chr12:46951873-46951953 2.69e-01 80 chr1:116674590-116674670 7.43e-02 80 chr4:99153529-99153609 7.32e-03 26_[+4(1.94e-05)]_46 chr2:135814542-135814622 1.59e-02 22_[+4(1.94e-05)]_50 chr6:26304053-26304133 1.52e-03 59_[+2(1.48e-05)]_13 chr9:128005740-128005820 1.96e-02 8_[+4(1.94e-05)]_8_[+4(7.94e-05)]_\ 39_[+4(1.94e-05)]_1 chrX:16826217-16826297 5.11e-01 80 chr3:25825755-25825835 7.15e-02 72_[+1(5.42e-05)] chr3:45429606-45429686 1.78e-04 27_[+3(1.68e-05)]_2_[+1(5.42e-05)]_\ 35 chr1:148523247-148523327 6.99e-02 80 chr16:8623079-8623159 9.42e-03 24_[+4(1.94e-05)]_48 chr1:109189611-109189691 1.69e-02 26_[+1(7.26e-05)]_46 chr8:39964913-39964993 6.47e-03 22_[+4(1.94e-05)]_50 chr20:45264202-45264282 8.22e-02 80 chr4:141348998-141349078 1.25e-04 13_[+5(8.59e-05)]_26_[+1(1.40e-05)]_\ 25 chr22:22378237-22378317 2.67e-03 69_[+3(4.08e-05)]_3 chr7:142411592-142411672 1.63e-01 80 chr7:135184758-135184838 2.28e-02 48_[+4(1.94e-05)]_24 chr5:126011955-126012035 2.27e-01 80 chr4:26624737-26624817 1.26e-02 26_[+4(1.94e-05)]_46 chr6:136547247-136547327 1.51e-03 2_[+2(5.66e-05)]_38_[+4(4.60e-05)]_\ 24 chr3:5239442-5239522 4.35e-03 11_[+4(6.01e-05)]_3_[+4(1.94e-05)]_\ 50 chr3:125072116-125072196 6.18e-01 80 chr10:70977086-70977166 5.19e-01 80 chr5:138855209-138855289 1.08e-01 70_[+1(5.42e-05)]_2 chr11:64334195-64334275 4.07e-02 8_[+3(4.08e-05)]_64 chr11:34393226-34393306 1.78e-01 80 chr4:82327144-82327224 9.87e-03 19_[+3(9.29e-05)]_53 chr19:19513978-19514058 2.67e-03 25_[+4(1.94e-05)]_47 chr6:27857200-27857280 7.52e-07 6_[+3(7.15e-06)]_5_[+1(9.09e-05)]_7_\ [+2(1.48e-05)]_38 chr4:7001022-7001102 4.70e-05 21_[+4(1.94e-05)]_51 chr5:142721529-142721609 1.62e-02 80 chr10:94607128-94607208 3.79e-04 62_[+3(7.15e-06)]_10 chr5:163781309-163781389 1.96e-02 21_[+1(7.26e-05)]_51 chr12:93521677-93521757 4.09e-03 27_[+1(1.40e-05)]_45 chr1:147144003-147144083 8.38e-02 80 chr2:157257965-157258045 1.94e-03 70_[+5(3.28e-05)]_2 chr7:156452081-156452161 2.56e-02 80 chr5:154028417-154028497 2.95e-01 80 chr21:38743240-38743320 2.33e-02 54_[+3(1.68e-05)]_18 chr1:113614835-113614915 1.48e-04 26_[+4(1.94e-05)]_30_[+2(4.53e-05)]_\ 8 chr11:3531010-3531090 8.51e-01 80 chr3:142779865-142779945 8.94e-02 17_[+1(5.42e-05)]_55 chr1:16193536-16193616 6.40e-04 19_[+1(1.40e-05)]_28_[+4(4.60e-05)]_\ 17 chr2:178029469-178029549 4.01e-04 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n09.farnam.hpc.yale.internal ********************************************************************************