******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/IKZF1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr9:138276863-138276943 1.0000 80 chr2:228270994-228271074 1.0000 80 chr7:12753409-12753489 1.0000 80 chr10:70778535-70778615 1.0000 80 chr11:76534737-76534817 1.0000 80 chr19:50872077-50872157 1.0000 80 chr15:40593792-40593872 1.0000 80 chr7:135175711-135175791 1.0000 80 chr19:39799679-39799759 1.0000 80 chr2:103038544-103038624 1.0000 80 chr15:28539807-28539887 1.0000 80 chr15:45112950-45113030 1.0000 80 chr1:29609950-29610030 1.0000 80 chr7:50427781-50427861 1.0000 80 chr11:65021657-65021737 1.0000 80 chr19:12722282-12722362 1.0000 80 chr9:103191739-103191819 1.0000 80 chr3:151984564-151984644 1.0000 80 chr5:118660064-118660144 1.0000 80 chr10:25337004-25337084 1.0000 80 chr1:24765170-24765250 1.0000 80 chr19:47366357-47366437 1.0000 80 chr16:29955386-29955466 1.0000 80 chr6:33480043-33480123 1.0000 80 chr3:152769351-152769431 1.0000 80 chr16:19499836-19499916 1.0000 80 chr7:100182799-100182879 1.0000 80 chr3:75442633-75442713 1.0000 80 chr14:31669487-31669567 1.0000 80 chr10:76868494-76868574 1.0000 80 chr11:113505801-11350588 1.0000 80 chr1:33560778-33560858 1.0000 80 chr5:139596191-139596271 1.0000 80 chr11:33744910-33744990 1.0000 80 chr19:39695510-39695590 1.0000 80 chr16:57834550-57834630 1.0000 80 chr9:115629760-115629840 1.0000 80 chr2:145648627-145648707 1.0000 80 chr1:176850203-176850283 1.0000 80 chr1:145542922-145543002 1.0000 80 chr16:89028487-89028567 1.0000 80 chr3:32741072-32741152 1.0000 80 chr2:197104545-197104625 1.0000 80 chr10:104223255-10422333 1.0000 80 chr12:18905612-18905692 1.0000 80 chr10:81971691-81971771 1.0000 80 chr6:112193443-112193523 1.0000 80 chr2:47586572-47586652 1.0000 80 chr19:47808713-47808793 1.0000 80 chr3:52334312-52334392 1.0000 80 chr8:95761819-95761899 1.0000 80 chr9:73053609-73053689 1.0000 80 chr10:106099983-10610006 1.0000 80 chr1:111715239-111715319 1.0000 80 chr12:47643827-47643907 1.0000 80 chr17:39949234-39949314 1.0000 80 chr10:93351256-93351336 1.0000 80 chr6:27264156-27264236 1.0000 80 chr6:30658572-30658652 1.0000 80 chrX:49047324-49047404 1.0000 80 chr11:117780828-11778090 1.0000 80 chr11:62166298-62166378 1.0000 80 chr8:130694350-130694430 1.0000 80 chr16:11065581-11065661 1.0000 80 chr19:46018487-46018567 1.0000 80 chr17:7746338-7746418 1.0000 80 chr10:22679257-22679337 1.0000 80 chr2:128300704-128300784 1.0000 80 chr16:15754606-15754686 1.0000 80 chr12:50435787-50435867 1.0000 80 chr2:55287140-55287220 1.0000 80 chr17:47073917-47073997 1.0000 80 chr7:64310026-64310106 1.0000 80 chr5:67716040-67716120 1.0000 80 chr22:39339247-39339327 1.0000 80 chr1:41306752-41306832 1.0000 80 chr6:138241077-138241157 1.0000 80 chr3:71962241-71962321 1.0000 80 chr6:35993456-35993536 1.0000 80 chr16:19733755-19733835 1.0000 80 chr15:66162963-66163043 1.0000 80 chr12:54690704-54690784 1.0000 80 chr10:38292638-38292718 1.0000 80 chr17:45971838-45971918 1.0000 80 chr1:234866530-234866610 1.0000 80 chr3:122799807-122799887 1.0000 80 chr17:259897-259977 1.0000 80 chr10:27389423-27389503 1.0000 80 chr2:217942751-217942831 1.0000 80 chr11:72446760-72446840 1.0000 80 chr19:51326690-51326770 1.0000 80 chr8:28745690-28745770 1.0000 80 chr19:40337713-40337793 1.0000 80 chr3:184484553-184484633 1.0000 80 chr19:40512266-40512346 1.0000 80 chr6:135628082-135628162 1.0000 80 chr12:31884929-31885009 1.0000 80 chr12:1686237-1686317 1.0000 80 chr8:38238779-38238859 1.0000 80 chr1:246599029-246599109 1.0000 80 chr16:89070319-89070399 1.0000 80 chr17:43236030-43236110 1.0000 80 chr19:55652795-55652875 1.0000 80 chr1:24164140-24164220 1.0000 80 chr1:249208205-249208285 1.0000 80 chr7:5465278-5465358 1.0000 80 chr3:149294116-149294196 1.0000 80 chr19:49652503-49652583 1.0000 80 chr14:23624579-23624659 1.0000 80 chr1:70925582-70925662 1.0000 80 chr2:219262625-219262705 1.0000 80 chr6:42670061-42670141 1.0000 80 chr4:120133566-120133646 1.0000 80 chr22:41065135-41065215 1.0000 80 chr8:59584737-59584817 1.0000 80 chr12:130144606-13014468 1.0000 80 chr11:16115976-16116056 1.0000 80 chr2:48338568-48338648 1.0000 80 chr17:49198436-49198516 1.0000 80 chr1:207178409-207178489 1.0000 80 chr1:65784153-65784233 1.0000 80 chr6:57039046-57039126 1.0000 80 chr2:27478291-27478371 1.0000 80 chr19:51244680-51244760 1.0000 80 chr16:30609743-30609823 1.0000 80 chr17:45589465-45589545 1.0000 80 chr7:35841594-35841674 1.0000 80 chr22:39818860-39818940 1.0000 80 chr12:54019555-54019635 1.0000 80 chr5:81718720-81718800 1.0000 80 chr20:48304840-48304920 1.0000 80 chr11:67122191-67122271 1.0000 80 chr6:119537528-119537608 1.0000 80 chr11:69796934-69797014 1.0000 80 chr6:36788802-36788882 1.0000 80 chr19:45946819-45946899 1.0000 80 chr15:91379704-91379784 1.0000 80 chr20:39679073-39679153 1.0000 80 chr4:2023538-2023618 1.0000 80 chr17:25730758-25730838 1.0000 80 chr1:109740819-109740899 1.0000 80 chr2:191184660-191184740 1.0000 80 chr8:91233669-91233749 1.0000 80 chr12:6445467-6445547 1.0000 80 chr19:6199592-6199672 1.0000 80 chr14:69229863-69229943 1.0000 80 chrX:41189841-41189921 1.0000 80 chr21:40692012-40692092 1.0000 80 chr7:511745-511825 1.0000 80 chr19:54272536-54272616 1.0000 80 chr2:136743289-136743369 1.0000 80 chr17:1617262-1617342 1.0000 80 chr4:129784708-129784788 1.0000 80 chr1:161593645-161593725 1.0000 80 chr5:122199060-122199140 1.0000 80 chr17:76132203-76132283 1.0000 80 chr11:72364508-72364588 1.0000 80 chr1:228273235-228273315 1.0000 80 chr19:13262419-13262499 1.0000 80 chr17:39835370-39835450 1.0000 80 chr7:123174949-123175029 1.0000 80 chr1:28605434-28605514 1.0000 80 chr12:64615625-64615705 1.0000 80 chr1:156092712-156092792 1.0000 80 chr2:122369346-122369426 1.0000 80 chr2:202645766-202645846 1.0000 80 chr4:74465193-74465273 1.0000 80 chr19:13212295-13212375 1.0000 80 chr6:28650516-28650596 1.0000 80 chr6:4337128-4337208 1.0000 80 chr12:13080552-13080632 1.0000 80 chr7:26346934-26347014 1.0000 80 chr22:23876198-23876278 1.0000 80 chr16:72106902-72106982 1.0000 80 chr10:112631399-11263147 1.0000 80 chr10:74004856-74004936 1.0000 80 chr1:200639274-200639354 1.0000 80 chr1:207206108-207206188 1.0000 80 chr7:142654337-142654417 1.0000 80 chr22:43671697-43671777 1.0000 80 chr19:47347544-47347624 1.0000 80 chr12:49350461-49350541 1.0000 80 chr15:80448378-80448458 1.0000 80 chr2:206949221-206949301 1.0000 80 chr10:5521695-5521775 1.0000 80 chr9:124049410-124049490 1.0000 80 chr8:103665958-103666038 1.0000 80 chr7:77168124-77168204 1.0000 80 chr8:59466472-59466552 1.0000 80 chr3:105849787-105849867 1.0000 80 chr1:231473622-231473702 1.0000 80 chr15:44719209-44719289 1.0000 80 chr16:29273260-29273340 1.0000 80 chr14:21572577-21572657 1.0000 80 chr1:28593551-28593631 1.0000 80 chr11:85846075-85846155 1.0000 80 chr12:104802547-10480262 1.0000 80 chr5:126307314-126307394 1.0000 80 chr2:202772058-202772138 1.0000 80 chr1:26109413-26109493 1.0000 80 chr19:48928226-48928306 1.0000 80 chr19:49468045-49468125 1.0000 80 chr1:156743033-156743113 1.0000 80 chr16:31520631-31520711 1.0000 80 chr1:246316553-246316633 1.0000 80 chr11:5706213-5706293 1.0000 80 chr6:43979909-43979989 1.0000 80 chr19:823782-823862 1.0000 80 chr1:249176839-249176919 1.0000 80 chr7:73237025-73237105 1.0000 80 chr2:160471957-160472037 1.0000 80 chr6:30845575-30845655 1.0000 80 chr2:85726333-85726413 1.0000 80 chr12:76508260-76508340 1.0000 80 chr20:51797675-51797755 1.0000 80 chr3:57204255-57204335 1.0000 80 chr19:49864907-49864987 1.0000 80 chr10:75757653-75757733 1.0000 80 chr14:23755626-23755706 1.0000 80 chr1:113247682-113247762 1.0000 80 chr14:31496246-31496326 1.0000 80 chr15:90732350-90732430 1.0000 80 chr1:161472960-161473040 1.0000 80 chr16:57725103-57725183 1.0000 80 chr17:62084194-62084274 1.0000 80 chr10:75408922-75409002 1.0000 80 chr1:101360474-101360554 1.0000 80 chr7:150021894-150021974 1.0000 80 chr15:65568177-65568257 1.0000 80 chr17:70903216-70903296 1.0000 80 chr11:355970-356050 1.0000 80 chr5:148186199-148186279 1.0000 80 chr9:130922245-130922325 1.0000 80 chr16:21168233-21168313 1.0000 80 chr18:9005578-9005658 1.0000 80 chr1:178987185-178987265 1.0000 80 chr11:95815772-95815852 1.0000 80 chr3:47803879-47803959 1.0000 80 chr15:41408848-41408928 1.0000 80 chr17:76983040-76983120 1.0000 80 chr15:85365111-85365191 1.0000 80 chr9:132520648-132520728 1.0000 80 chr6:31782510-31782590 1.0000 80 chr1:202033897-202033977 1.0000 80 chr7:107731391-107731471 1.0000 80 chr14:23341948-23342028 1.0000 80 chr6:28911535-28911615 1.0000 80 chr22:28956503-28956583 1.0000 80 chr20:52534108-52534188 1.0000 80 chr2:85812455-85812535 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_IKZF1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/IKZF1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.245 C 0.259 G 0.265 T 0.232 Background letter frequencies (from file dataset with add-one prior applied): A 0.245 C 0.258 G 0.265 T 0.232 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CWGGRARR MEME-1 width = 8 sites = 184 llr = 1146 E-value = 2.3e-069 ******************************************************************************** -------------------------------------------------------------------------------- Motif CWGGRARR MEME-1 Description -------------------------------------------------------------------------------- Simplified A 25::5a53 pos.-specific C 5::::::1 probability G 1:aa5:35 matrix T 25::::22 bits 2.1 * 1.9 ** * 1.7 ** * 1.5 ** * Relative 1.3 ** * Entropy 1.1 ***** (9.0 bits) 0.8 ***** 0.6 ****** 0.4 ******* 0.2 ******** 0.0 -------- Multilevel CAGGGAAG consensus AT A GA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGGRARR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:16115976-16116056 19 1.73e-05 AAAAGTCCAA CAGGAAAG TCCAACAGGA chr11:5706213-5706293 4 3.60e-05 GGC CAGGGAAG ACGTGGTTAG chr12:104802547-10480262 7 3.60e-05 taggct cagggaag aatggagttg chr12:64615625-64615705 1 3.60e-05 . CAGGGAAG GAAAGGAACG chr8:59584737-59584817 18 3.60e-05 ttccattgcc cagggaag agcaggagac chr12:1686237-1686317 67 3.60e-05 AGCAGGAGGC CAGGGAAG AGAGAA chr10:81971691-81971771 68 3.60e-05 CCAGGAATGA CAGGGAAG GAAAA chr6:33480043-33480123 57 3.60e-05 AGGGAAGGAA CAGGGAAG AGGAAGAGCT chr3:47803879-47803959 48 7.01e-05 GTCATACTTA CTGGGAAG AAATTCAAAG chr17:62084194-62084274 65 7.01e-05 GCAGAGGAAG CTGGGAAG CTGCTGAT chr1:156743033-156743113 27 7.01e-05 GAGCCAGAGC CTGGGAAG ATAAGAGAGA chr16:29273260-29273340 27 7.01e-05 CCCCTTGGCC CTGGGAAG GGTGTGAAGG chr8:103665958-103666038 62 7.01e-05 agagcgtgag ctgggaag gacaggaagg chr6:28650516-28650596 14 7.01e-05 atatggcctc ctgggaag ggaaagacct chr1:228273235-228273315 73 7.01e-05 AGCCAACAGA CTGGGAAG chr4:129784708-129784788 35 7.01e-05 GTTAGGATTC CTGGGAAG GCCGCGGATT chr7:35841594-35841674 52 7.01e-05 AAGAGAACGC CTGGGAAG GGCGCCCCCC chr22:41065135-41065215 39 7.01e-05 cggtatttta ctgggaag agcgatcctg chr1:24164140-24164220 26 7.01e-05 GAAGGAATTG CTGGGAAG GGAAGAGCAT chr11:355970-356050 36 8.61e-05 GGCTGTGCGC CAGGAAAA CATTCCCGAA chr19:46018487-46018567 45 8.61e-05 TTCCCCATTT CAGGAAAA AGCCTGGTGT chr6:27264156-27264236 49 8.61e-05 GGAATGTGAA CAGGAAAA AGCTCTTGCG chr11:95815772-95815852 14 1.22e-04 GCTGCAATTC CAGGAAGG AGGTCTGGCA chr19:49864907-49864987 26 1.22e-04 AGGCCGGGAA CAGGGAAA ACTTTTTCCA chr19:48928226-48928306 21 1.22e-04 CCCTTCCCTC CAGGAAGG ACCCTGAGAA chr9:124049410-124049490 13 1.22e-04 TTCCCCAGAT CAGGGAAA GCTTTGTTTG chr1:207178409-207178489 20 1.22e-04 GGGAAGCCTC CAGGGAAA GAGAGGTGGG chr19:40337713-40337793 4 1.22e-04 agg cagggaaa agatctgcag chr15:66162963-66163043 46 1.22e-04 GAGGATCCAA CAGGAAGG GAAGAGCCCT chr3:71962241-71962321 31 1.22e-04 gcaaggaaga caggaagg gcaggagaga chr5:67716040-67716120 47 1.22e-04 GAGTCAACAC CAGGAAGG GACAGCTGGT chr16:11065581-11065661 19 1.22e-04 AACATTGCCC CAGGGAAA AAGCCATTCC chr16:57834550-57834630 16 1.22e-04 CTGCGGTTAT CAGGAAGG GAAGTGGAGG chr19:39799679-39799759 64 1.22e-04 TCCTGCCTTT CAGGGAAA ACCATGATG chr10:70778535-70778615 35 1.22e-04 ggaacaagct caggaagg agtttggcat chr15:85365111-85365191 6 1.74e-04 ccaaa cagggagg acaaaaggga chr5:126307314-126307394 64 1.74e-04 ACACAACCCA AAGGAAAG ACAGTTATC chr11:85846075-85846155 13 1.74e-04 ggaaattaag aaggaaag agtgttccgt chr15:80448378-80448458 60 1.74e-04 tgactcctcc aaggaaag ggagactccc chr1:207206108-207206188 46 1.74e-04 GCTGTTTCCT CAGGGAGG GAATGGGAGG chr11:72364508-72364588 18 1.74e-04 TCCCGACTCC CAGGGAGG GAGAGGGTGT chr19:51244680-51244760 72 1.74e-04 tcacatccca ctggaaaa a chr7:5465278-5465358 72 1.74e-04 GAGGAGTGAG AAGGAAAG A chr19:39695510-39695590 17 1.74e-04 TATTCTAAAT AAGGAAAG ACTGGGAGGG chr3:75442633-75442713 25 1.74e-04 ggacctctgc ctggaaaa gccaggtatt chr1:24765170-24765250 69 1.74e-04 AGGATTTCAC CAGGGAGG GGAA chr15:90732350-90732430 49 2.56e-04 gcaggaagaa aagggaag gaagggagag chr16:31520631-31520711 39 2.56e-04 GGACTTAATC CTGGAAGG CCCTTCTACC chr22:23876198-23876278 2 2.56e-04 g aagggaag gcaggaggga chr6:4337128-4337208 15 2.56e-04 gcgccagtgc ctgggaaa gcacccatta chr4:74465193-74465273 32 2.56e-04 GTGTCTCCCA CTGGGAAA ACAGCTGTGG chr7:123174949-123175029 2 2.56e-04 t aagggaag gagctagagg chr8:91233669-91233749 23 2.56e-04 tgagataagg aagggaag aatgactgta chr6:119537528-119537608 71 2.56e-04 atttggggat aagggaag ac chr12:50435787-50435867 52 2.56e-04 CACAGTCTGT CTGGGAAA GGAGATAAGG chr3:52334312-52334392 14 2.56e-04 CCTTGTGACC AAGGGAAG TTCCCTTTCT chr3:32741072-32741152 53 2.56e-04 TCCCAGTATC CTGGAAGG GGGCTTGTGA chr7:50427781-50427861 66 2.56e-04 CGTTGGGCTT CTGGAAGG GAGGGAC chr7:12753409-12753489 69 2.56e-04 gcactgcttc aagggaag gtca chr19:51326690-51326770 28 3.24e-04 CTGAGGCTTC CTGGGAGG AGCAGGAATC chr6:112193443-112193523 38 3.24e-04 GCCATGGATC TAGGGAAG TAGAGAGGAA chr20:52534108-52534188 35 4.04e-04 TAGCGACTGC ATGGGAAG AGATAAGACA chr7:107731391-107731471 28 4.04e-04 GAAGAGATTC CAGGAATG ACTCGGTTCC chr1:113247682-113247762 67 4.04e-04 TCCCAGGCTG CAGGAAGA GAGGGC chr15:91379704-91379784 26 4.04e-04 ACAGGGTTTT CAGGAAGA CAGCGTGGGG chr3:184484553-184484633 42 4.04e-04 ttcccttggc ttggaaag ccactcccac chr3:122799807-122799887 19 4.04e-04 ttccagctgg caggaatg aggcagggac chr16:19733755-19733835 10 4.04e-04 CTGTCATAT CAGGAAGA AACCTCCACC chr9:73053609-73053689 45 4.04e-04 atggatgttc caggaaga gggaacagca chr10:76868494-76868574 21 4.04e-04 GACAGTTGTC CTGGAAAT GTTTCCTGGA chr15:28539807-28539887 10 4.04e-04 catcttccc atgggaag caaggtcacc chr16:57725103-57725183 51 4.87e-04 CCCCAGTCTC AAGGAAAA TCCTGGGTTG chr7:77168124-77168204 72 4.87e-04 AAGTGGGACT TTGGGAAG T chr2:202645766-202645846 3 4.87e-04 TC CTGGGAAT TGTTCTTGGG chr17:39835370-39835450 34 4.87e-04 catttctttt ctgggaat gggtggagaa chr2:191184660-191184740 37 4.87e-04 GGGACCGGGC CAGGGAGA AGGCGGAGAG chr4:2023538-2023618 48 4.87e-04 ctgctcgtcc ctgggaat ggaatgtctc chr12:54019555-54019635 21 4.87e-04 ATCCCACTCT TTGGGAAG CCCTGGGTTT chr22:39818860-39818940 8 4.87e-04 GGTCTCA AAGGAAAA CTGTCTTTCC chr12:31884929-31885009 17 4.87e-04 GTTTTGTGGT AAGGAAAA CAGGATGTTC chr17:39949234-39949314 49 4.87e-04 GGAATGTCAG AAGGAAAA CAGGAGACAA chr12:47643827-47643907 31 4.87e-04 ctccagtgac ctgggaat ctcactccca chr1:111715239-111715319 42 4.87e-04 GTTCCCATTC CTGGGAAT GACTTTGCAC chr16:29955386-29955466 48 4.87e-04 ggggaaggct ttgggaag actgtgatgc chr15:40593792-40593872 59 4.87e-04 CAACACTAGA CTGGGAAT GCATGCCGTT chr14:31496246-31496326 55 5.68e-04 CTTTCCTTTT CTGGAATG GGTTGTGGGG chr10:74004856-74004936 32 5.68e-04 ATTAGGCAAA TAGGAAAA CAGAGGCTGA chr5:122199060-122199140 28 5.68e-04 tggaatgcag taggaaaa tagagagtga chr17:1617262-1617342 49 5.68e-04 ACAGGCTCCT AAGGGAAA GGGAGGGAAA chr12:6445467-6445547 12 5.68e-04 AGATCCGGGA AAGGGAAA TCTTTTCCCA chr2:55287140-55287220 19 5.68e-04 GGAAACTCTC CTGGAATG TCGCTGGCTA chr16:15754606-15754686 32 5.68e-04 ccttgtgaca ctggaatg tttccctttt chr14:31669487-31669567 58 5.68e-04 TTCCTAGCTC TAGGAAAA ACCACTTCCC chr19:50872077-50872157 53 5.68e-04 TTCCCACCGC CTGGAATG CCGACTTGCT chr2:85812455-85812535 10 6.84e-04 TGGACTGGG CAGGAAGT AGGCTTGGTG chr3:105849787-105849867 51 6.84e-04 CAGGAATTCT CAGGAAGT GCCTCCTACA chr10:5521695-5521775 73 6.84e-04 CCTCTGCCTC ATGGAAAA chr17:49198436-49198516 51 6.84e-04 TCCCAGGGGA AAGGGAGG GGTTCGGGAA chr6:42670061-42670141 72 6.84e-04 AATCTCCTCA ATGGAAAA A chr17:45971838-45971918 57 6.84e-04 GTAGGATTTG TAGGAAGG GAACGGGGGT chr17:7746338-7746418 49 6.84e-04 CTCACTGACT TAGGGAAA GCTGAGTCAG chr10:104223255-10422333 13 6.84e-04 GGAGGAGGGG AAGGGAGG CATTTGGATG chr7:100182799-100182879 55 6.84e-04 CTCACAGGCT TAGGAAGG AGGAGGAGGA chr3:152769351-152769431 24 6.84e-04 TCCATCTATC CAGGAAGT TTTCAGAGAA chr8:59466472-59466552 28 7.96e-04 GTGTGTTTAG AAGGAAAT ACCCCTGAGA chr22:43671697-43671777 4 7.96e-04 gga atgggaaa tggcagtaaa chr1:156092712-156092792 63 7.96e-04 CTGCTGAAGC CAGGAATA ATTCTGGCTG chr21:40692012-40692092 72 7.96e-04 tcagccagag atggaagg g chr12:130144606-13014468 26 7.96e-04 CAGGAGGGTG ATGGGAAA GCCCTGCGGA chr1:249208205-249208285 36 7.96e-04 AATGGGAAAA ATGGGAAA AGGCTGACAG chr1:234866530-234866610 56 7.96e-04 CCATCCTGGC CAGGGAGT TGTGGCTTCT chr10:38292638-38292718 53 7.96e-04 gccccaagga atgggaaa ctggtgagta chr1:41306752-41306832 26 7.96e-04 gtctgggagt atgggaaa aaagccgaag chr12:18905612-18905692 28 7.96e-04 AGCAGACCAC ATGGGAAA TCCTAcccct chr2:197104545-197104625 51 7.96e-04 TGGAAGAGTC ATGGAAGG CGGGACATGT chr5:139596191-139596271 15 7.96e-04 ATCAACTCCC TTGGAAAA TCTTATCAGC chr10:25337004-25337084 51 7.96e-04 TGGGAAAAAT TTGGAAAA TCCCAAGTCT chr17:76983040-76983120 73 9.23e-04 ttttttccta ttggaagg chr16:21168233-21168313 62 9.23e-04 GGAATGATGA TTGGAAGG CTGTAATCTA chr10:75408922-75409002 56 9.23e-04 CTGACTGGCA ATGGGAGG GGGAGGAGAA chr12:76508260-76508340 66 9.23e-04 TATTACATTC CTGGAAGT AGGGCAG chr6:36788802-36788882 9 9.23e-04 aagaagtg ttggaagg ttggaatgtt chr11:72446760-72446840 1 9.23e-04 . CAGGAAAC TACTTATCTC chr22:39339247-39339327 49 9.23e-04 TACAAGATTC CAGGAAAC AGGAAGCAGA chr8:130694350-130694430 42 9.23e-04 CAGTGTCAGG ATGGGAGG ATGAAATTAG chr1:33560778-33560858 27 9.23e-04 TCGCCTCTTC TTGGAAGG CGCCTCCTTC chr1:202033897-202033977 65 1.05e-03 tcccagcact ttgggagg ccgaggtg chr14:21572577-21572657 3 1.05e-03 AA CTGGGAGT CCCACTAGCA chr1:109740819-109740899 27 1.05e-03 TAGCTAAGGG CTGGGAGT TCCTGATCCC chr11:69796934-69797014 63 1.05e-03 ATCCTGAGTT CTGGGAGT AGGACCCTGG chr16:30609743-30609823 68 1.05e-03 tcccagcact ttgggagg ccaag chr6:57039046-57039126 64 1.05e-03 AGTTTTCCTA AAGGAATG GGGAGGTTG chr1:65784153-65784233 57 1.05e-03 cagccgtaaa aaggaatg agatcatgac chr6:135628082-135628162 57 1.05e-03 CTCTTATCAC TAGGGAAT AGTTCTTCCC chr6:138241077-138241157 69 1.05e-03 TCTAGCTGGT TTGGGAGG CAGA chr10:93351256-93351336 67 1.05e-03 tacttgggag cagggaac gtgtcc chr8:95761819-95761899 55 1.05e-03 gtttccaaat aaggaatg gCATGCATCC chr2:47586572-47586652 19 1.05e-03 TTTCCGTAAA CAGGGAAC CAACCAACAG chr7:135175711-135175791 13 1.05e-03 caacttcctg aaggaatg aatgttggat chr15:41408848-41408928 14 1.19e-03 GCCCGGGATC CTGGGATA TTTGTTCCCG chr10:75757653-75757733 48 1.19e-03 GCCCCTCCCT TAGGAATG GGGGAGGGGC chr1:249176839-249176919 71 1.19e-03 atctgttttc ctgggata gg chr7:142654337-142654417 65 1.19e-03 gcttgggggt aagggaga gaaggaat chr1:161593645-161593725 35 1.19e-03 GCTAATGTTC TAGGAAGA CACCCTTATC chr20:39679073-39679153 34 1.19e-03 CCCTGGAATT TTGGAAAT GTTCTCCTTG chr5:81718720-81718800 52 1.19e-03 GCCTAGATTC CAGGAATT GGGGTAATGG chr19:47808713-47808793 60 1.19e-03 CAAATCGACC TTGGAAAT CCTGGGTGAG chr11:76534737-76534817 69 1.19e-03 CATATCCCAC CAGGAATT TCAG chr2:228270994-228271074 50 1.19e-03 ATTCATCCTT CAGGAATT TTTGGCTGAA chr9:138276863-138276943 73 1.19e-03 taggaatggt taggaatg chr2:85726333-85726413 14 1.30e-03 tgccaaagtg cagggatt agaggcgtga chr1:26109413-26109493 59 1.30e-03 TGCTTCCGTT CTGGGAAC CGCGTCCTCG chr1:200639274-200639354 17 1.30e-03 AGGGGCACGT TTGGGAAT CCTCTTGGAA chr7:26346934-26347014 34 1.30e-03 cttccccatt ctgggaac accagtcttc chr11:67122191-67122271 68 1.30e-03 CAGTGGGAGT CTGGGAAC CAGCA chr16:89070319-89070399 36 1.30e-03 AAAGCaggag atggaaga taggagaaga chr2:202772058-202772138 41 1.39e-03 TTCACCCCAG CTGGAATT TGGCCATAAT chr19:13262419-13262499 62 1.39e-03 CCCTGGAGGG AAGGAAGT GAAACTCTCC chr17:45589465-45589545 51 1.39e-03 AGTGTATTGT TTGGAATG AGGGATGGCA chr2:48338568-48338648 41 1.39e-03 CCGGCGGAGA TTGGAAGA GGTGCTGACA chrX:41189841-41189921 62 1.50e-03 tcccaaagtg ctgggatt acaggcatta chr19:45946819-45946899 4 1.50e-03 CCC TTGGGATG GGGGCGGAGA chr2:217942751-217942831 22 1.50e-03 atggtgctcc ttgggatg gcccatctgg chr19:13212295-13212375 53 1.61e-03 GGGAACAAGA CAGGGAGC CCCTAACTGA chr10:22679257-22679337 46 1.61e-03 TGAAATTAAC CAGGGAGC TCTCCCCTTC chr16:19499836-19499916 32 1.74e-03 CACCCCATTC CTGGAAGC CAGCAAGCCC chr19:49652503-49652583 29 1.86e-03 GCTTCTGGAG AAGGAATT CAGCAACCTT chr11:33744910-33744990 53 1.97e-03 ATCTGCTACT TAGGAATT TGCTGACGCA chr9:103191739-103191819 46 1.97e-03 tgtattcccc taggaatt tcccagtcca chr3:57204255-57204335 61 2.04e-03 TCTTTTCCCG GAGGAAAA GAAGAGCGGA chr14:23755626-23755706 71 2.14e-03 TTTCCTTCTG AAGGAAGC CC chr17:70903216-70903296 16 2.24e-03 AGCTGGCATT TAGGAAGC AGTGAGATAT chr1:70925582-70925662 17 2.24e-03 tcccaaagtg ttgggatt agaggagtga chr17:259897-259977 18 2.33e-03 TCGCCAACAG ATGGAAGC ACGCATGCGC chr2:136743289-136743369 9 2.40e-03 CGGAGTTG GAGGGAAT TCCCGGGAAT chr2:122369346-122369426 51 2.48e-03 ggagttacag gaggaaga ggaactggag chr1:176850203-176850283 57 2.48e-03 CCTTCCGGGA GAGGAATG TCACTCCTGG chr17:76132203-76132283 28 2.56e-03 CATATCAGCA GTGGGAAT GTTCACCCTT chr2:27478291-27478371 40 2.70e-03 GGTGGAGTCT GTGGGAGA GTGATAAGAG chr2:206949221-206949301 52 2.75e-03 CGTCTCCCCC TTGGGATC TGTTCCGGTG chr5:148186199-148186279 43 2.80e-03 tagacttcca gaggaaac gatgataaga chr7:73237025-73237105 6 2.80e-03 GCCGG GAGGGATA ATACGATCTC chr14:23341948-23342028 51 2.85e-03 ATGGTGAGTT GAGGGAAC CTCTGGGGCT chr4:120133566-120133646 18 2.98e-03 TCGCGCCTCC GAGGAAGC CAACTGTATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGGRARR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:16115976-16116056 1.7e-05 18_[+1]_54 chr11:5706213-5706293 3.6e-05 3_[+1]_69 chr12:104802547-10480262 3.6e-05 6_[+1]_66 chr12:64615625-64615705 3.6e-05 [+1]_72 chr8:59584737-59584817 3.6e-05 17_[+1]_55 chr12:1686237-1686317 3.6e-05 66_[+1]_6 chr10:81971691-81971771 3.6e-05 67_[+1]_5 chr6:33480043-33480123 3.6e-05 56_[+1]_16 chr3:47803879-47803959 7e-05 47_[+1]_25 chr17:62084194-62084274 7e-05 64_[+1]_8 chr1:156743033-156743113 7e-05 26_[+1]_46 chr16:29273260-29273340 7e-05 26_[+1]_46 chr8:103665958-103666038 7e-05 61_[+1]_11 chr6:28650516-28650596 7e-05 13_[+1]_59 chr1:228273235-228273315 7e-05 72_[+1] chr4:129784708-129784788 7e-05 34_[+1]_38 chr7:35841594-35841674 7e-05 51_[+1]_21 chr22:41065135-41065215 7e-05 38_[+1]_34 chr1:24164140-24164220 7e-05 25_[+1]_47 chr11:355970-356050 8.6e-05 35_[+1]_37 chr19:46018487-46018567 8.6e-05 44_[+1]_28 chr6:27264156-27264236 8.6e-05 48_[+1]_24 chr11:95815772-95815852 0.00012 13_[+1]_59 chr19:49864907-49864987 0.00012 25_[+1]_47 chr19:48928226-48928306 0.00012 20_[+1]_52 chr9:124049410-124049490 0.00012 12_[+1]_60 chr1:207178409-207178489 0.00012 19_[+1]_53 chr19:40337713-40337793 0.00012 3_[+1]_69 chr15:66162963-66163043 0.00012 45_[+1]_27 chr3:71962241-71962321 0.00012 30_[+1]_42 chr5:67716040-67716120 0.00012 46_[+1]_26 chr16:11065581-11065661 0.00012 18_[+1]_54 chr16:57834550-57834630 0.00012 15_[+1]_57 chr19:39799679-39799759 0.00012 63_[+1]_9 chr10:70778535-70778615 0.00012 34_[+1]_38 chr15:85365111-85365191 0.00017 5_[+1]_67 chr5:126307314-126307394 0.00017 63_[+1]_9 chr11:85846075-85846155 0.00017 12_[+1]_60 chr15:80448378-80448458 0.00017 59_[+1]_13 chr1:207206108-207206188 0.00017 45_[+1]_27 chr11:72364508-72364588 0.00017 17_[+1]_55 chr19:51244680-51244760 0.00017 71_[+1]_1 chr7:5465278-5465358 0.00017 71_[+1]_1 chr19:39695510-39695590 0.00017 16_[+1]_56 chr3:75442633-75442713 0.00017 24_[+1]_48 chr1:24765170-24765250 0.00017 68_[+1]_4 chr15:90732350-90732430 0.00026 48_[+1]_24 chr16:31520631-31520711 0.00026 38_[+1]_34 chr22:23876198-23876278 0.00026 1_[+1]_71 chr6:4337128-4337208 0.00026 14_[+1]_58 chr4:74465193-74465273 0.00026 31_[+1]_41 chr7:123174949-123175029 0.00026 1_[+1]_71 chr8:91233669-91233749 0.00026 22_[+1]_50 chr6:119537528-119537608 0.00026 70_[+1]_2 chr12:50435787-50435867 0.00026 51_[+1]_21 chr3:52334312-52334392 0.00026 13_[+1]_59 chr3:32741072-32741152 0.00026 52_[+1]_20 chr7:50427781-50427861 0.00026 65_[+1]_7 chr7:12753409-12753489 0.00026 68_[+1]_4 chr19:51326690-51326770 0.00032 27_[+1]_45 chr6:112193443-112193523 0.00032 37_[+1]_35 chr20:52534108-52534188 0.0004 34_[+1]_38 chr7:107731391-107731471 0.0004 27_[+1]_45 chr1:113247682-113247762 0.0004 66_[+1]_6 chr15:91379704-91379784 0.0004 25_[+1]_47 chr3:184484553-184484633 0.0004 41_[+1]_31 chr3:122799807-122799887 0.0004 18_[+1]_54 chr16:19733755-19733835 0.0004 9_[+1]_63 chr9:73053609-73053689 0.0004 44_[+1]_28 chr10:76868494-76868574 0.0004 20_[+1]_52 chr15:28539807-28539887 0.0004 9_[+1]_63 chr16:57725103-57725183 0.00049 50_[+1]_22 chr7:77168124-77168204 0.00049 71_[+1]_1 chr2:202645766-202645846 0.00049 2_[+1]_70 chr17:39835370-39835450 0.00049 33_[+1]_39 chr2:191184660-191184740 0.00049 36_[+1]_36 chr4:2023538-2023618 0.00049 47_[+1]_25 chr12:54019555-54019635 0.00049 20_[+1]_52 chr22:39818860-39818940 0.00049 7_[+1]_65 chr12:31884929-31885009 0.00049 16_[+1]_56 chr17:39949234-39949314 0.00049 48_[+1]_24 chr12:47643827-47643907 0.00049 30_[+1]_42 chr1:111715239-111715319 0.00049 41_[+1]_31 chr16:29955386-29955466 0.00049 47_[+1]_25 chr15:40593792-40593872 0.00049 58_[+1]_14 chr14:31496246-31496326 0.00057 54_[+1]_18 chr10:74004856-74004936 0.00057 31_[+1]_41 chr5:122199060-122199140 0.00057 27_[+1]_45 chr17:1617262-1617342 0.00057 48_[+1]_24 chr12:6445467-6445547 0.00057 11_[+1]_61 chr2:55287140-55287220 0.00057 18_[+1]_54 chr16:15754606-15754686 0.00057 31_[+1]_41 chr14:31669487-31669567 0.00057 57_[+1]_15 chr19:50872077-50872157 0.00057 52_[+1]_20 chr2:85812455-85812535 0.00068 9_[+1]_63 chr3:105849787-105849867 0.00068 50_[+1]_22 chr10:5521695-5521775 0.00068 72_[+1] chr17:49198436-49198516 0.00068 50_[+1]_22 chr6:42670061-42670141 0.00068 71_[+1]_1 chr17:45971838-45971918 0.00068 56_[+1]_16 chr17:7746338-7746418 0.00068 48_[+1]_24 chr10:104223255-10422333 0.00068 12_[+1]_60 chr7:100182799-100182879 0.00068 54_[+1]_18 chr3:152769351-152769431 0.00068 23_[+1]_49 chr8:59466472-59466552 0.0008 27_[+1]_45 chr22:43671697-43671777 0.0008 3_[+1]_69 chr1:156092712-156092792 0.0008 62_[+1]_10 chr21:40692012-40692092 0.0008 71_[+1]_1 chr12:130144606-13014468 0.0008 25_[+1]_47 chr1:249208205-249208285 0.0008 35_[+1]_37 chr1:234866530-234866610 0.0008 55_[+1]_17 chr10:38292638-38292718 0.0008 52_[+1]_20 chr1:41306752-41306832 0.0008 25_[+1]_47 chr12:18905612-18905692 0.0008 27_[+1]_45 chr2:197104545-197104625 0.0008 50_[+1]_22 chr5:139596191-139596271 0.0008 14_[+1]_58 chr10:25337004-25337084 0.0008 50_[+1]_22 chr17:76983040-76983120 0.00092 72_[+1] chr16:21168233-21168313 0.00092 61_[+1]_11 chr10:75408922-75409002 0.00092 55_[+1]_17 chr12:76508260-76508340 0.00092 65_[+1]_7 chr6:36788802-36788882 0.00092 8_[+1]_64 chr11:72446760-72446840 0.00092 [+1]_72 chr22:39339247-39339327 0.00092 48_[+1]_24 chr8:130694350-130694430 0.00092 41_[+1]_31 chr1:33560778-33560858 0.00092 26_[+1]_46 chr1:202033897-202033977 0.001 64_[+1]_8 chr14:21572577-21572657 0.001 2_[+1]_70 chr1:109740819-109740899 0.001 26_[+1]_46 chr11:69796934-69797014 0.001 62_[+1]_10 chr16:30609743-30609823 0.001 67_[+1]_5 chr6:57039046-57039126 0.001 63_[+1]_9 chr1:65784153-65784233 0.001 56_[+1]_16 chr6:135628082-135628162 0.001 56_[+1]_16 chr6:138241077-138241157 0.001 68_[+1]_4 chr10:93351256-93351336 0.001 66_[+1]_6 chr8:95761819-95761899 0.001 54_[+1]_18 chr2:47586572-47586652 0.001 18_[+1]_54 chr7:135175711-135175791 0.001 12_[+1]_60 chr15:41408848-41408928 0.0012 13_[+1]_59 chr10:75757653-75757733 0.0012 47_[+1]_25 chr1:249176839-249176919 0.0012 70_[+1]_2 chr7:142654337-142654417 0.0012 64_[+1]_8 chr1:161593645-161593725 0.0012 34_[+1]_38 chr20:39679073-39679153 0.0012 33_[+1]_39 chr5:81718720-81718800 0.0012 51_[+1]_21 chr19:47808713-47808793 0.0012 59_[+1]_13 chr11:76534737-76534817 0.0012 68_[+1]_4 chr2:228270994-228271074 0.0012 49_[+1]_23 chr9:138276863-138276943 0.0012 72_[+1] chr2:85726333-85726413 0.0013 13_[+1]_59 chr1:26109413-26109493 0.0013 58_[+1]_14 chr1:200639274-200639354 0.0013 16_[+1]_56 chr7:26346934-26347014 0.0013 33_[+1]_39 chr11:67122191-67122271 0.0013 67_[+1]_5 chr16:89070319-89070399 0.0013 35_[+1]_37 chr2:202772058-202772138 0.0014 40_[+1]_32 chr19:13262419-13262499 0.0014 61_[+1]_11 chr17:45589465-45589545 0.0014 50_[+1]_22 chr2:48338568-48338648 0.0014 40_[+1]_32 chrX:41189841-41189921 0.0015 61_[+1]_11 chr19:45946819-45946899 0.0015 3_[+1]_69 chr2:217942751-217942831 0.0015 21_[+1]_51 chr19:13212295-13212375 0.0016 52_[+1]_20 chr10:22679257-22679337 0.0016 45_[+1]_27 chr16:19499836-19499916 0.0017 31_[+1]_41 chr19:49652503-49652583 0.0019 28_[+1]_44 chr11:33744910-33744990 0.002 52_[+1]_20 chr9:103191739-103191819 0.002 45_[+1]_27 chr3:57204255-57204335 0.002 60_[+1]_12 chr14:23755626-23755706 0.0021 70_[+1]_2 chr17:70903216-70903296 0.0022 15_[+1]_57 chr1:70925582-70925662 0.0022 16_[+1]_56 chr17:259897-259977 0.0023 17_[+1]_55 chr2:136743289-136743369 0.0024 8_[+1]_64 chr2:122369346-122369426 0.0025 50_[+1]_22 chr1:176850203-176850283 0.0025 56_[+1]_16 chr17:76132203-76132283 0.0026 27_[+1]_45 chr2:27478291-27478371 0.0027 39_[+1]_33 chr2:206949221-206949301 0.0028 51_[+1]_21 chr5:148186199-148186279 0.0028 42_[+1]_30 chr7:73237025-73237105 0.0028 5_[+1]_67 chr14:23341948-23342028 0.0029 50_[+1]_22 chr4:120133566-120133646 0.003 17_[+1]_55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGGRARR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CWGGRARR width=8 seqs=184 chr11:16115976-16116056 ( 19) CAGGAAAG 1 chr11:5706213-5706293 ( 4) CAGGGAAG 1 chr12:104802547-10480262 ( 7) CAGGGAAG 1 chr12:64615625-64615705 ( 1) CAGGGAAG 1 chr8:59584737-59584817 ( 18) CAGGGAAG 1 chr12:1686237-1686317 ( 67) CAGGGAAG 1 chr10:81971691-81971771 ( 68) CAGGGAAG 1 chr6:33480043-33480123 ( 57) CAGGGAAG 1 chr3:47803879-47803959 ( 48) CTGGGAAG 1 chr17:62084194-62084274 ( 65) CTGGGAAG 1 chr1:156743033-156743113 ( 27) CTGGGAAG 1 chr16:29273260-29273340 ( 27) CTGGGAAG 1 chr8:103665958-103666038 ( 62) CTGGGAAG 1 chr6:28650516-28650596 ( 14) CTGGGAAG 1 chr1:228273235-228273315 ( 73) CTGGGAAG 1 chr4:129784708-129784788 ( 35) CTGGGAAG 1 chr7:35841594-35841674 ( 52) CTGGGAAG 1 chr22:41065135-41065215 ( 39) CTGGGAAG 1 chr1:24164140-24164220 ( 26) CTGGGAAG 1 chr11:355970-356050 ( 36) CAGGAAAA 1 chr19:46018487-46018567 ( 45) CAGGAAAA 1 chr6:27264156-27264236 ( 49) CAGGAAAA 1 chr11:95815772-95815852 ( 14) CAGGAAGG 1 chr19:49864907-49864987 ( 26) CAGGGAAA 1 chr19:48928226-48928306 ( 21) CAGGAAGG 1 chr9:124049410-124049490 ( 13) CAGGGAAA 1 chr1:207178409-207178489 ( 20) CAGGGAAA 1 chr19:40337713-40337793 ( 4) CAGGGAAA 1 chr15:66162963-66163043 ( 46) CAGGAAGG 1 chr3:71962241-71962321 ( 31) CAGGAAGG 1 chr5:67716040-67716120 ( 47) CAGGAAGG 1 chr16:11065581-11065661 ( 19) CAGGGAAA 1 chr16:57834550-57834630 ( 16) CAGGAAGG 1 chr19:39799679-39799759 ( 64) CAGGGAAA 1 chr10:70778535-70778615 ( 35) CAGGAAGG 1 chr15:85365111-85365191 ( 6) CAGGGAGG 1 chr5:126307314-126307394 ( 64) AAGGAAAG 1 chr11:85846075-85846155 ( 13) AAGGAAAG 1 chr15:80448378-80448458 ( 60) AAGGAAAG 1 chr1:207206108-207206188 ( 46) CAGGGAGG 1 chr11:72364508-72364588 ( 18) CAGGGAGG 1 chr19:51244680-51244760 ( 72) CTGGAAAA 1 chr7:5465278-5465358 ( 72) AAGGAAAG 1 chr19:39695510-39695590 ( 17) AAGGAAAG 1 chr3:75442633-75442713 ( 25) CTGGAAAA 1 chr1:24765170-24765250 ( 69) CAGGGAGG 1 chr15:90732350-90732430 ( 49) AAGGGAAG 1 chr16:31520631-31520711 ( 39) CTGGAAGG 1 chr22:23876198-23876278 ( 2) AAGGGAAG 1 chr6:4337128-4337208 ( 15) CTGGGAAA 1 chr4:74465193-74465273 ( 32) CTGGGAAA 1 chr7:123174949-123175029 ( 2) AAGGGAAG 1 chr8:91233669-91233749 ( 23) AAGGGAAG 1 chr6:119537528-119537608 ( 71) AAGGGAAG 1 chr12:50435787-50435867 ( 52) CTGGGAAA 1 chr3:52334312-52334392 ( 14) AAGGGAAG 1 chr3:32741072-32741152 ( 53) CTGGAAGG 1 chr7:50427781-50427861 ( 66) CTGGAAGG 1 chr7:12753409-12753489 ( 69) AAGGGAAG 1 chr19:51326690-51326770 ( 28) CTGGGAGG 1 chr6:112193443-112193523 ( 38) TAGGGAAG 1 chr20:52534108-52534188 ( 35) ATGGGAAG 1 chr7:107731391-107731471 ( 28) CAGGAATG 1 chr1:113247682-113247762 ( 67) CAGGAAGA 1 chr15:91379704-91379784 ( 26) CAGGAAGA 1 chr3:184484553-184484633 ( 42) TTGGAAAG 1 chr3:122799807-122799887 ( 19) CAGGAATG 1 chr16:19733755-19733835 ( 10) CAGGAAGA 1 chr9:73053609-73053689 ( 45) CAGGAAGA 1 chr10:76868494-76868574 ( 21) CTGGAAAT 1 chr15:28539807-28539887 ( 10) ATGGGAAG 1 chr16:57725103-57725183 ( 51) AAGGAAAA 1 chr7:77168124-77168204 ( 72) TTGGGAAG 1 chr2:202645766-202645846 ( 3) CTGGGAAT 1 chr17:39835370-39835450 ( 34) CTGGGAAT 1 chr2:191184660-191184740 ( 37) CAGGGAGA 1 chr4:2023538-2023618 ( 48) CTGGGAAT 1 chr12:54019555-54019635 ( 21) TTGGGAAG 1 chr22:39818860-39818940 ( 8) AAGGAAAA 1 chr12:31884929-31885009 ( 17) AAGGAAAA 1 chr17:39949234-39949314 ( 49) AAGGAAAA 1 chr12:47643827-47643907 ( 31) CTGGGAAT 1 chr1:111715239-111715319 ( 42) CTGGGAAT 1 chr16:29955386-29955466 ( 48) TTGGGAAG 1 chr15:40593792-40593872 ( 59) CTGGGAAT 1 chr14:31496246-31496326 ( 55) CTGGAATG 1 chr10:74004856-74004936 ( 32) TAGGAAAA 1 chr5:122199060-122199140 ( 28) TAGGAAAA 1 chr17:1617262-1617342 ( 49) AAGGGAAA 1 chr12:6445467-6445547 ( 12) AAGGGAAA 1 chr2:55287140-55287220 ( 19) CTGGAATG 1 chr16:15754606-15754686 ( 32) CTGGAATG 1 chr14:31669487-31669567 ( 58) TAGGAAAA 1 chr19:50872077-50872157 ( 53) CTGGAATG 1 chr2:85812455-85812535 ( 10) CAGGAAGT 1 chr3:105849787-105849867 ( 51) CAGGAAGT 1 chr10:5521695-5521775 ( 73) ATGGAAAA 1 chr17:49198436-49198516 ( 51) AAGGGAGG 1 chr6:42670061-42670141 ( 72) ATGGAAAA 1 chr17:45971838-45971918 ( 57) TAGGAAGG 1 chr17:7746338-7746418 ( 49) TAGGGAAA 1 chr10:104223255-10422333 ( 13) AAGGGAGG 1 chr7:100182799-100182879 ( 55) TAGGAAGG 1 chr3:152769351-152769431 ( 24) CAGGAAGT 1 chr8:59466472-59466552 ( 28) AAGGAAAT 1 chr22:43671697-43671777 ( 4) ATGGGAAA 1 chr1:156092712-156092792 ( 63) CAGGAATA 1 chr21:40692012-40692092 ( 72) ATGGAAGG 1 chr12:130144606-13014468 ( 26) ATGGGAAA 1 chr1:249208205-249208285 ( 36) ATGGGAAA 1 chr1:234866530-234866610 ( 56) CAGGGAGT 1 chr10:38292638-38292718 ( 53) ATGGGAAA 1 chr1:41306752-41306832 ( 26) ATGGGAAA 1 chr12:18905612-18905692 ( 28) ATGGGAAA 1 chr2:197104545-197104625 ( 51) ATGGAAGG 1 chr5:139596191-139596271 ( 15) TTGGAAAA 1 chr10:25337004-25337084 ( 51) TTGGAAAA 1 chr17:76983040-76983120 ( 73) TTGGAAGG 1 chr16:21168233-21168313 ( 62) TTGGAAGG 1 chr10:75408922-75409002 ( 56) ATGGGAGG 1 chr12:76508260-76508340 ( 66) CTGGAAGT 1 chr6:36788802-36788882 ( 9) TTGGAAGG 1 chr11:72446760-72446840 ( 1) CAGGAAAC 1 chr22:39339247-39339327 ( 49) CAGGAAAC 1 chr8:130694350-130694430 ( 42) ATGGGAGG 1 chr1:33560778-33560858 ( 27) TTGGAAGG 1 chr1:202033897-202033977 ( 65) TTGGGAGG 1 chr14:21572577-21572657 ( 3) CTGGGAGT 1 chr1:109740819-109740899 ( 27) CTGGGAGT 1 chr11:69796934-69797014 ( 63) CTGGGAGT 1 chr16:30609743-30609823 ( 68) TTGGGAGG 1 chr6:57039046-57039126 ( 64) AAGGAATG 1 chr1:65784153-65784233 ( 57) AAGGAATG 1 chr6:135628082-135628162 ( 57) TAGGGAAT 1 chr6:138241077-138241157 ( 69) TTGGGAGG 1 chr10:93351256-93351336 ( 67) CAGGGAAC 1 chr8:95761819-95761899 ( 55) AAGGAATG 1 chr2:47586572-47586652 ( 19) CAGGGAAC 1 chr7:135175711-135175791 ( 13) AAGGAATG 1 chr15:41408848-41408928 ( 14) CTGGGATA 1 chr10:75757653-75757733 ( 48) TAGGAATG 1 chr1:249176839-249176919 ( 71) CTGGGATA 1 chr7:142654337-142654417 ( 65) AAGGGAGA 1 chr1:161593645-161593725 ( 35) TAGGAAGA 1 chr20:39679073-39679153 ( 34) TTGGAAAT 1 chr5:81718720-81718800 ( 52) CAGGAATT 1 chr19:47808713-47808793 ( 60) TTGGAAAT 1 chr11:76534737-76534817 ( 69) CAGGAATT 1 chr2:228270994-228271074 ( 50) CAGGAATT 1 chr9:138276863-138276943 ( 73) TAGGAATG 1 chr2:85726333-85726413 ( 14) CAGGGATT 1 chr1:26109413-26109493 ( 59) CTGGGAAC 1 chr1:200639274-200639354 ( 17) TTGGGAAT 1 chr7:26346934-26347014 ( 34) CTGGGAAC 1 chr11:67122191-67122271 ( 68) CTGGGAAC 1 chr16:89070319-89070399 ( 36) ATGGAAGA 1 chr2:202772058-202772138 ( 41) CTGGAATT 1 chr19:13262419-13262499 ( 62) AAGGAAGT 1 chr17:45589465-45589545 ( 51) TTGGAATG 1 chr2:48338568-48338648 ( 41) TTGGAAGA 1 chrX:41189841-41189921 ( 62) CTGGGATT 1 chr19:45946819-45946899 ( 4) TTGGGATG 1 chr2:217942751-217942831 ( 22) TTGGGATG 1 chr19:13212295-13212375 ( 53) CAGGGAGC 1 chr10:22679257-22679337 ( 46) CAGGGAGC 1 chr16:19499836-19499916 ( 32) CTGGAAGC 1 chr19:49652503-49652583 ( 29) AAGGAATT 1 chr11:33744910-33744990 ( 53) TAGGAATT 1 chr9:103191739-103191819 ( 46) TAGGAATT 1 chr3:57204255-57204335 ( 61) GAGGAAAA 1 chr14:23755626-23755706 ( 71) AAGGAAGC 1 chr17:70903216-70903296 ( 16) TAGGAAGC 1 chr1:70925582-70925662 ( 17) TTGGGATT 1 chr17:259897-259977 ( 18) ATGGAAGC 1 chr2:136743289-136743369 ( 9) GAGGGAAT 1 chr2:122369346-122369426 ( 51) GAGGAAGA 1 chr1:176850203-176850283 ( 57) GAGGAATG 1 chr17:76132203-76132283 ( 28) GTGGGAAT 1 chr2:27478291-27478371 ( 40) GTGGGAGA 1 chr2:206949221-206949301 ( 52) TTGGGATC 1 chr5:148186199-148186279 ( 43) GAGGAAAC 1 chr7:73237025-73237105 ( 6) GAGGGATA 1 chr14:23341948-23342028 ( 51) GAGGGAAC 1 chr4:120133566-120133646 ( 18) GAGGAAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGGRARR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.6892 E= 2.3e-069 0 97 -228 -24 116 -1417 -1417 96 -1417 -1417 192 -1417 -1417 -1417 192 -1417 98 -1417 96 -1417 203 -1417 -1417 -1417 109 -1417 23 -46 15 -148 79 -37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGGRARR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 184 E= 2.3e-069 0.244565 0.505435 0.054348 0.195652 0.548913 0.000000 0.000000 0.451087 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.483696 0.000000 0.516304 0.000000 1.000000 0.000000 0.000000 0.000000 0.521739 0.000000 0.309783 0.168478 0.271739 0.092391 0.456522 0.179348 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGGRARR MEME-1 regular expression -------------------------------------------------------------------------------- [CA][AT]GG[GA]A[AG][GA] -------------------------------------------------------------------------------- Time 5.04 secs. ******************************************************************************** ******************************************************************************** MOTIF BHTTCCYD MEME-2 width = 8 sites = 154 llr = 958 E-value = 1.1e-034 ******************************************************************************** -------------------------------------------------------------------------------- Motif BHTTCCYD MEME-2 Description -------------------------------------------------------------------------------- Simplified A 12::::15 pos.-specific C 343:aa5: probability G 2::::::3 matrix T 447a::33 bits 2.1 * 1.9 *** 1.7 *** 1.5 *** Relative 1.3 **** Entropy 1.1 **** (9.0 bits) 0.8 **** 0.6 ***** 0.4 ******* 0.2 ******** 0.0 -------- Multilevel TCTTCCCA consensus CTC TT sequence GA G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BHTTCCYD MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr22:28956503-28956583 27 2.57e-05 tttctgcagt ttttccca tacataatca chr2:160471957-160472037 19 2.57e-05 TATCCAGATC TTTTCCCA ATCCCACCTG chr12:49350461-49350541 39 2.57e-05 cttgctgccc tcttcccA ACCTGCGGTT chr10:112631399-11263147 7 2.57e-05 CTGCCC TTTTCCCA ACGCTCCCAT chr12:6445467-6445547 22 2.57e-05 AAGGGAAATC TTTTCCCA GCAACTCCGC chr6:135628082-135628162 68 2.57e-05 AGGGAATAGT TCTTCCCA AACCA chr3:184484553-184484633 15 2.57e-05 atgctttgtg ttttccca actccacagt chr11:113505801-11350588 73 2.57e-05 GAGACAGCAC TTTTCCCA chr1:29609950-29610030 59 2.57e-05 TAGATGCTTC TCTTCCCA GAGGAGTCCA chr15:45112950-45113030 4 2.57e-05 CAG TTTTCCCA GAAGTTCCTG chr4:129784708-129784788 11 5.44e-05 TTGTGATGCC CCTTCCCA GACCAGGTTA chr2:128300704-128300784 30 5.44e-05 caggtctttc ccttccca cgaggccata chr12:18905612-18905692 8 5.44e-05 TAAGGTT CCTTCCCA GGAGCAGACC chr17:76983040-76983120 65 7.75e-05 gcttcctgtt ttttccta ttggaagg chr11:5706213-5706293 63 7.75e-05 CACAAAGGAA TTTTCCTA GAGGAACCGC chr9:124049410-124049490 39 7.75e-05 TGGCGATTGT TTTTCCTA AGAAGTTTCC chr6:57039046-57039126 56 7.75e-05 GAAAGAAAAG TTTTCCTA AAGGAATGGG chr15:65568177-65568257 45 1.70e-04 AGATTACTAC TATTCCCA TCACTCGTGT chr16:57725103-57725183 73 1.70e-04 GGGTTGCAGA GTTTCCCA chr12:76508260-76508340 10 1.70e-04 TGTTTCAGA GCTTCCCA AAGCATGCAT chr19:49468045-49468125 16 1.70e-04 AGCCTTCCAA GCTTCCCA AGGATCCGGA chr19:55652795-55652875 40 1.70e-04 CCAAGGACAG GCTTCCCA AAGACGGGAG chr17:43236030-43236110 71 1.70e-04 AAGCTGGTTT TATTCCCA tt chr8:38238779-38238859 7 1.70e-04 CATCCC CTTTCCTA ATCCACCTTT chr12:54690704-54690784 30 1.70e-04 CTTGCATCTG TTTTCCCT GCCGTCAGCA chr16:15754606-15754686 48 1.70e-04 tgtttccctt ttttccct tgaaaccgcc chr10:22679257-22679337 18 1.70e-04 AATTGCCGTT GCTTCCCA TATGCCTTCC chr11:62166298-62166378 37 1.70e-04 CCTTTCCCTG TCTTCCCT AGAAATTCCA chr10:106099983-10610006 42 1.70e-04 tggaacctgt gcttccca gaacgtgata chr14:31669487-31669567 46 1.70e-04 CCTTACTCAT CCTTCCTA GCTCTAGGAA chr2:103038544-103038624 1 1.70e-04 . GCTTCCCA CATTCCCTCT chr6:28911535-28911615 37 2.39e-04 CACCATAAGC CCTTCCCT CAGGCCCCTT chr1:113247682-113247762 16 2.39e-04 CTCACTTCCT CCTTCCCT GGGGAGGGGA chr3:57204255-57204335 53 2.39e-04 TTCCCGTTTC TTTTCCCG GAGGAAAAGA chr1:249176839-249176919 42 2.39e-04 ggttgcattc cattccca gagctatgaa chr19:48928226-48928306 12 2.39e-04 TCTCGCCAGC CCTTCCCT CCAGGAAGGA chr22:39818860-39818940 20 2.39e-04 GGAAAACTGT CTTTCCCT GACCTCCTTG chr16:19733755-19733835 65 2.39e-04 ATCAGTCTTT CATTCCCA TTCCCTTA chr8:130694350-130694430 23 2.39e-04 TCCAGAGCAG CATTCCCA GCAGTGTCAG chr16:89028487-89028567 63 2.39e-04 CAGCACTGGG CATTCCCA TTCCATAGTA chr15:40593792-40593872 43 2.39e-04 GCTCAGCTCC CATTCCCA ACACTAGACT chr2:85726333-85726413 50 2.99e-04 gcccagccca ttttcctt ttcctgtcca chr17:39835370-39835450 73 2.99e-04 tggagtgccg tcttcctt chr19:54272536-54272616 22 2.99e-04 ctaaccctta tcttcctt aagttcccca chr16:30609743-30609823 6 2.99e-04 TGttt ttttcctt tttaaagatg chr17:47073917-47073997 35 2.99e-04 CTATCACTCC TCTTCCTT GTCTCCCACC chr19:39799679-39799759 4 2.99e-04 TCA TATTCCTA CTGGAACAAT chr16:31520631-31520711 3 3.59e-04 GA TTCTCCCA AACCGTCACC chr2:206949221-206949301 2 3.59e-04 C TCCTCCCA ATCCCGGAGG chr6:28650516-28650596 34 3.59e-04 aaagacctga ccttcccg agccccgaca chr12:54019555-54019635 65 3.59e-04 TCCCTCCTCT TTCTCCCA TTCCACCC chr12:1686237-1686317 25 3.59e-04 AACTCCTCAT CCTTCCCG GGAAGAAACT chr6:30658572-30658652 13 3.59e-04 TCCACCTTCC TCCTCCCA GTTCATCCTC chr9:115629760-115629840 42 3.59e-04 tcCTCAGAAC TCCTCCCA CCTCCTCAGA chr19:12722282-12722362 2 3.59e-04 C TCCTCCCA CGGCGGGCCA chr14:31496246-31496326 45 4.76e-04 GTCCCCTCTT CTTTCCTT TTCTGGAATG chr6:30845575-30845655 43 4.76e-04 GCCGCTTTCA CTTTCCTT CCATTTTCCA chr19:823782-823862 39 4.76e-04 GCTGCGGCTG TTTTCCTG GCCTGTGAGA chr6:4337128-4337208 54 4.76e-04 gggaaaggga gtttccct tttcctgggg chr17:25730758-25730838 2 4.76e-04 A GTTTCCCT TATCTATCCT chr14:23624579-23624659 23 4.76e-04 tctctcttcc ccttcctt cttATCCTGT chr19:47808713-47808793 24 4.76e-04 AACAACACGG CATTCCTA TAATGCTCCA chr11:33744910-33744990 16 4.76e-04 CATTCCTGTC CCTTCCTT CTCACACATC chr14:23341948-23342028 30 5.32e-04 ACCGGATTAT TTTTCCAA ATCATGGTGA chr19:49864907-49864987 37 5.32e-04 AGGGAAAACT TTTTCCAA TACAGTCAGA chr3:105849787-105849867 17 5.32e-04 CTTCCCCACC CCCTCCCA TTCTCATCAG chr16:72106902-72106982 46 5.32e-04 tgtgaattac ccctccca tcacaatggc chr7:26346934-26347014 16 5.32e-04 acagcccccc ttttccaa cttccccatt chr12:13080552-13080632 38 5.32e-04 gcgcatgcTC CCCTCCCA GGTGCTGGCA chr5:67716040-67716120 29 5.32e-04 AGGCTTCTAT CTCTCCCA GAGTCAACAC chr2:47586572-47586652 53 5.32e-04 CATATCCTCC CTCTCCCA CTACTCTATC chr16:19499836-19499916 48 5.32e-04 GCCAGCAAGC CCCTCCCA ACAAGGGCAG chr6:31782510-31782590 24 6.45e-04 CCCCAAGTGC TCCTCCTA CCCGGATCAG chr1:246316553-246316633 17 6.45e-04 AGAGGAACAG TCCTCCTA CACAGACCAT chr19:47347544-47347624 28 6.45e-04 catctcctcc ccttcctg gctgcattcc chr19:13262419-13262499 26 6.45e-04 CTGCGGGGTG CTTTCCTG GCGTCACGCC chr17:45971838-45971918 28 6.45e-04 AACCTGGAAT CTTTCCTG GAGGGAAAAG chr12:47643827-47643907 4 6.45e-04 taa tcctccta ggtacacaac chr3:151984564-151984644 11 6.45e-04 CTCCCTTCCT CATTCCCT GCATGAGTCA chr19:50872077-50872157 20 6.45e-04 CTCTCTCCAG CTTTCCTG CTTCCGCCCT chr16:21168233-21168313 28 7.21e-04 CCTAACTCAG CTTTCCAA AGCAACTTCC chr14:23755626-23755706 60 7.21e-04 CTCCCAATTT GTTTCCTT CTGAAGGAAG chr19:13212295-13212375 1 7.21e-04 . TATTCCTT CTTCCAGAAT chr7:12753409-12753489 9 7.21e-04 gataagga tattcctt tcctccagga chr11:355970-356050 44 8.40e-04 GCCAGGAAAA CATTCCCG AACCGACGGC chr7:150021894-150021974 21 8.40e-04 CCACCTCCAG CATTCCCG GTTCCTGCTT chr10:75408922-75409002 35 8.40e-04 TTCCTCACCT GCCTCCCA TTCCTGACTG chr4:74465193-74465273 14 8.40e-04 GCCTGGAAAC TCCTCCCT GTGTCTCCCA chrX:41189841-41189921 49 8.40e-04 gcgtgcctag gcctccca aagtgctggg chr14:69229863-69229943 21 8.40e-04 CCTTTATCTT TCCTCCCT AGCCAGCTTC chr1:207178409-207178489 44 8.40e-04 TGGGAAAGGA CATTCCCG GAGGATGAGA chr1:70925582-70925662 4 8.40e-04 ttg gtctccca aagtgttggg chr6:35993456-35993536 28 8.40e-04 AAGCTTCCTA TCCTCCCT AGTTTGGAAC chr11:65021657-65021737 7 8.40e-04 GGCGGT GCCTCCCA AAATTCCCAA chr15:28539807-28539887 53 8.40e-04 tacaaaatgt gcctccca cagcccctcg chr12:104802547-10480262 72 9.07e-04 tgggacacaa gcttcctg a chr7:142654337-142654417 25 9.07e-04 aactgaggaa tattcctg gaagcagcag chr1:228273235-228273315 15 9.07e-04 ACTAATCCTG GTTTCCTG GTTCTCACAC chr1:109740819-109740899 46 9.07e-04 CCTGATCCCA GCTTCCTG GATATTACTG chr1:65784153-65784233 33 9.07e-04 AGTAAACACA GATTCCCt actatgcagc chr11:72446760-72446840 62 9.07e-04 CTCAAGTTCC TATTCCTG CACTAAGGGC chr15:66162963-66163043 16 9.07e-04 TGAACTGGTT GCTTCCTG CTGCAACGCT chr6:138241077-138241157 15 9.07e-04 TCCAGTGGAT CATTCCTT TTTTTATCAA chr1:145542922-145543002 64 9.07e-04 CTGGGCATAG GCTTCCTG ATTCCAAGC chr10:76868494-76868574 29 9.07e-04 TCCTGGAAAT GTTTCCTG GAACTCCTGG chr6:33480043-33480123 19 9.07e-04 GCCCCTGCGG CATTCCTT CAGCTGGAGT chr1:24765170-24765250 21 9.07e-04 gttaactgcc gattccct agggcctGTC chr9:130922245-130922325 38 1.05e-03 CTCCCGCCGC TCCTCCCG GACCTCCCTA chr10:75757653-75757733 40 1.05e-03 AATCCCAGGC CCCTCCCT TAGGAATGGG chr20:51797675-51797755 60 1.05e-03 cctttttctc ttttccat agctccagtc chr15:44719209-44719289 27 1.05e-03 CCTCAGGCAG CTCTCCCT ACGAACTACC chr10:5521695-5521775 1 1.05e-03 . GTTTCCAA CATCCCTCCC chr1:207206108-207206188 15 1.05e-03 TCCTAGCCTC CCCTCCCT ACCTCTCATT chr21:40692012-40692092 31 1.05e-03 ttgcccttga gtttccaa tgggattcat chr19:40512266-40512346 32 1.05e-03 TCAAACATTG TCTTCCAT GTCAGCCTCA chr8:95761819-95761899 45 1.05e-03 ggtcagaggg gtttccaa ataaggaatg chr15:80448378-80448458 14 1.17e-03 ataatatcca gcctccta caggaagctg chr20:39679073-39679153 43 1.17e-03 TTTGGAAATG TTCTCCTT GAGAATTGCT chr3:149294116-149294196 1 1.17e-03 . ACTTCCCA CCACTTCCCA chrX:49047324-49047404 20 1.17e-03 CTATCCCTCT TCCTCCTT TGAAATTCCA chr3:32741072-32741152 40 1.17e-03 AGGGAGTCAC ACTTCCCA GTATCCTGGA chr20:52534108-52534188 2 1.28e-03 G TTTTCCAG CCTGCTTTCT chr9:132520648-132520728 32 1.28e-03 ctccactttt ctttccat agcgcatatc chr7:73237025-73237105 66 1.28e-03 GATGATCCCG GATTCCTT GGTTTTG chr6:43979909-43979989 41 1.28e-03 GGGGTGTTCT CATTCCAA CCCTGGAGAT chr2:48338568-48338648 26 1.28e-03 CGTGCGGTCG CCCTCCCG GCGGAGATTG chr12:50435787-50435867 20 1.28e-03 CTGGTCCCTG CCCTCCCG AAGTGGGGTG chr3:52334312-52334392 39 1.41e-03 TCTTATCTCA GACTCCCA GAGCACGTTA chr1:101360474-101360554 41 1.51e-03 CCTCCATTTC TTCTCCAA GGTAACAACT chr1:28605434-28605514 27 1.51e-03 TATCAGCTGT TTCTCCAA GAGGAACTAG chr2:219262625-219262705 61 1.51e-03 GGAGGTGGGG GATTCCTG AGGAATCCTG chr19:49652503-49652583 3 1.51e-03 CT CTTTCCAG GCCCGGCAGC chr2:197104545-197104625 8 1.51e-03 CCGCTTC ATTTCCTA ACCCTTATCT chr17:70903216-70903296 58 1.66e-03 CACAGCGAGT CCCTCCTG CTCATATCTC chr8:59584737-59584817 6 1.66e-03 cgaga tattccat tgcccaggga chr1:176850203-176850283 36 1.66e-03 TGAAGCGCAG CTCTCCTG GATCCTTCCG chr8:28745690-28745770 37 1.78e-03 ctgttctctg aattccca aaaccctgaa chr1:33560778-33560858 36 1.78e-03 CTTGGAAGGC GCCTCCTT CGGGAATACC chr2:228270994-228271074 66 1.78e-03 TTTTTGGCTG AATTCCCA GACCTAA chr18:9005578-9005658 49 1.86e-03 GAGACCTGGG GCTTCCAG GGCTGCAGGA chr8:59466472-59466552 6 1.86e-03 GAAAC GTTTCCAG TAGGGTGTGT chr11:72364508-72364588 5 1.86e-03 GCTC CACTCCCG ACTCCCAGGG chr2:145648627-145648707 16 1.86e-03 tgaccagtga tattccag gcagtggtag chr4:2023538-2023618 33 1.96e-03 gaaggcttct gcctcctg ctcgtccctg chr19:39695510-39695590 58 1.96e-03 GGAGGCTGGG GCCTCCTG GCTGGGCAGG chr7:511745-511825 1 2.16e-03 . GACTCCCG GGGCAGGCTC chr1:178987185-178987265 46 2.28e-03 TGCTTATGGA TTCTCCAG GAGCCCTTGG chr1:161593645-161593725 3 2.28e-03 TG ATTTCCTG TTAATTCCAC chr11:67122191-67122271 29 2.28e-03 CCCCTCACCA ACTTCCTG GCAGGAGGCA chr10:81971691-81971771 54 2.28e-03 CCCAGGCCCA TCCTCCAG GAATGACAGG chr5:118660064-118660144 15 2.48e-03 AGGTTTCTAA GTCTCCAT CCTCTCAGAA chr7:135175711-135175791 60 2.48e-03 agtcaagaat gactccaa ggtttctggc chr3:47803879-47803959 19 2.60e-03 AGTTGGTGAG AATTCCTG CCATGAGGTC chr2:202772058-202772138 25 2.73e-03 TTTGTCTGTC ACCTCCTT CACCCCAGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BHTTCCYD MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:28956503-28956583 2.6e-05 26_[+2]_46 chr2:160471957-160472037 2.6e-05 18_[+2]_54 chr12:49350461-49350541 2.6e-05 38_[+2]_34 chr10:112631399-11263147 2.6e-05 6_[+2]_66 chr12:6445467-6445547 2.6e-05 21_[+2]_51 chr6:135628082-135628162 2.6e-05 67_[+2]_5 chr3:184484553-184484633 2.6e-05 14_[+2]_58 chr11:113505801-11350588 2.6e-05 72_[+2] chr1:29609950-29610030 2.6e-05 58_[+2]_14 chr15:45112950-45113030 2.6e-05 3_[+2]_69 chr4:129784708-129784788 5.4e-05 10_[+2]_62 chr2:128300704-128300784 5.4e-05 29_[+2]_43 chr12:18905612-18905692 5.4e-05 7_[+2]_65 chr17:76983040-76983120 7.8e-05 64_[+2]_8 chr11:5706213-5706293 7.8e-05 62_[+2]_10 chr9:124049410-124049490 7.8e-05 38_[+2]_34 chr6:57039046-57039126 7.8e-05 55_[+2]_17 chr15:65568177-65568257 0.00017 44_[+2]_28 chr16:57725103-57725183 0.00017 72_[+2] chr12:76508260-76508340 0.00017 9_[+2]_63 chr19:49468045-49468125 0.00017 15_[+2]_57 chr19:55652795-55652875 0.00017 39_[+2]_33 chr17:43236030-43236110 0.00017 70_[+2]_2 chr8:38238779-38238859 0.00017 6_[+2]_66 chr12:54690704-54690784 0.00017 29_[+2]_43 chr16:15754606-15754686 0.00017 47_[+2]_25 chr10:22679257-22679337 0.00017 17_[+2]_55 chr11:62166298-62166378 0.00017 36_[+2]_36 chr10:106099983-10610006 0.00017 41_[+2]_31 chr14:31669487-31669567 0.00017 45_[+2]_27 chr2:103038544-103038624 0.00017 [+2]_72 chr6:28911535-28911615 0.00024 36_[+2]_36 chr1:113247682-113247762 0.00024 15_[+2]_57 chr3:57204255-57204335 0.00024 52_[+2]_20 chr1:249176839-249176919 0.00024 41_[+2]_31 chr19:48928226-48928306 0.00024 11_[+2]_61 chr22:39818860-39818940 0.00024 19_[+2]_53 chr16:19733755-19733835 0.00024 64_[+2]_8 chr8:130694350-130694430 0.00024 22_[+2]_50 chr16:89028487-89028567 0.00024 62_[+2]_10 chr15:40593792-40593872 0.00024 42_[+2]_30 chr2:85726333-85726413 0.0003 49_[+2]_23 chr17:39835370-39835450 0.0003 72_[+2] chr19:54272536-54272616 0.0003 21_[+2]_51 chr16:30609743-30609823 0.0003 5_[+2]_67 chr17:47073917-47073997 0.0003 34_[+2]_38 chr19:39799679-39799759 0.0003 3_[+2]_69 chr16:31520631-31520711 0.00036 2_[+2]_70 chr2:206949221-206949301 0.00036 1_[+2]_71 chr6:28650516-28650596 0.00036 33_[+2]_39 chr12:54019555-54019635 0.00036 64_[+2]_8 chr12:1686237-1686317 0.00036 24_[+2]_48 chr6:30658572-30658652 0.00036 12_[+2]_60 chr9:115629760-115629840 0.00036 41_[+2]_31 chr19:12722282-12722362 0.00036 1_[+2]_71 chr14:31496246-31496326 0.00048 44_[+2]_28 chr6:30845575-30845655 0.00048 42_[+2]_30 chr19:823782-823862 0.00048 38_[+2]_34 chr6:4337128-4337208 0.00048 53_[+2]_19 chr17:25730758-25730838 0.00048 1_[+2]_71 chr14:23624579-23624659 0.00048 22_[+2]_50 chr19:47808713-47808793 0.00048 23_[+2]_49 chr11:33744910-33744990 0.00048 15_[+2]_57 chr14:23341948-23342028 0.00053 29_[+2]_43 chr19:49864907-49864987 0.00053 36_[+2]_36 chr3:105849787-105849867 0.00053 16_[+2]_56 chr16:72106902-72106982 0.00053 45_[+2]_27 chr7:26346934-26347014 0.00053 15_[+2]_57 chr12:13080552-13080632 0.00053 37_[+2]_35 chr5:67716040-67716120 0.00053 28_[+2]_44 chr2:47586572-47586652 0.00053 52_[+2]_20 chr16:19499836-19499916 0.00053 47_[+2]_25 chr6:31782510-31782590 0.00064 23_[+2]_49 chr1:246316553-246316633 0.00064 16_[+2]_56 chr19:47347544-47347624 0.00064 27_[+2]_45 chr19:13262419-13262499 0.00064 25_[+2]_47 chr17:45971838-45971918 0.00064 27_[+2]_45 chr12:47643827-47643907 0.00064 3_[+2]_69 chr3:151984564-151984644 0.00064 10_[+2]_62 chr19:50872077-50872157 0.00064 19_[+2]_53 chr16:21168233-21168313 0.00072 27_[+2]_45 chr14:23755626-23755706 0.00072 59_[+2]_13 chr19:13212295-13212375 0.00072 [+2]_72 chr7:12753409-12753489 0.00072 8_[+2]_64 chr11:355970-356050 0.00084 43_[+2]_29 chr7:150021894-150021974 0.00084 20_[+2]_52 chr10:75408922-75409002 0.00084 34_[+2]_38 chr4:74465193-74465273 0.00084 13_[+2]_59 chrX:41189841-41189921 0.00084 48_[+2]_24 chr14:69229863-69229943 0.00084 20_[+2]_52 chr1:207178409-207178489 0.00084 43_[+2]_29 chr1:70925582-70925662 0.00084 3_[+2]_69 chr6:35993456-35993536 0.00084 27_[+2]_45 chr11:65021657-65021737 0.00084 6_[+2]_66 chr15:28539807-28539887 0.00084 52_[+2]_20 chr12:104802547-10480262 0.00091 71_[+2]_1 chr7:142654337-142654417 0.00091 24_[+2]_48 chr1:228273235-228273315 0.00091 14_[+2]_58 chr1:109740819-109740899 0.00091 45_[+2]_27 chr1:65784153-65784233 0.00091 32_[+2]_40 chr11:72446760-72446840 0.00091 61_[+2]_11 chr15:66162963-66163043 0.00091 15_[+2]_57 chr6:138241077-138241157 0.00091 14_[+2]_58 chr1:145542922-145543002 0.00091 63_[+2]_9 chr10:76868494-76868574 0.00091 28_[+2]_44 chr6:33480043-33480123 0.00091 18_[+2]_54 chr1:24765170-24765250 0.00091 20_[+2]_52 chr9:130922245-130922325 0.001 37_[+2]_35 chr10:75757653-75757733 0.001 39_[+2]_33 chr20:51797675-51797755 0.001 59_[+2]_13 chr15:44719209-44719289 0.001 26_[+2]_46 chr10:5521695-5521775 0.001 [+2]_72 chr1:207206108-207206188 0.001 14_[+2]_58 chr21:40692012-40692092 0.001 30_[+2]_42 chr19:40512266-40512346 0.001 31_[+2]_41 chr8:95761819-95761899 0.001 44_[+2]_28 chr15:80448378-80448458 0.0012 13_[+2]_59 chr20:39679073-39679153 0.0012 42_[+2]_30 chr3:149294116-149294196 0.0012 [+2]_72 chrX:49047324-49047404 0.0012 19_[+2]_53 chr3:32741072-32741152 0.0012 39_[+2]_33 chr20:52534108-52534188 0.0013 1_[+2]_71 chr9:132520648-132520728 0.0013 31_[+2]_41 chr7:73237025-73237105 0.0013 65_[+2]_7 chr6:43979909-43979989 0.0013 40_[+2]_32 chr2:48338568-48338648 0.0013 25_[+2]_47 chr12:50435787-50435867 0.0013 19_[+2]_53 chr3:52334312-52334392 0.0014 38_[+2]_34 chr1:101360474-101360554 0.0015 40_[+2]_32 chr1:28605434-28605514 0.0015 26_[+2]_46 chr2:219262625-219262705 0.0015 60_[+2]_12 chr19:49652503-49652583 0.0015 2_[+2]_70 chr2:197104545-197104625 0.0015 7_[+2]_65 chr17:70903216-70903296 0.0017 57_[+2]_15 chr8:59584737-59584817 0.0017 5_[+2]_67 chr1:176850203-176850283 0.0017 35_[+2]_37 chr8:28745690-28745770 0.0018 36_[+2]_36 chr1:33560778-33560858 0.0018 35_[+2]_37 chr2:228270994-228271074 0.0018 65_[+2]_7 chr18:9005578-9005658 0.0019 48_[+2]_24 chr8:59466472-59466552 0.0019 5_[+2]_67 chr11:72364508-72364588 0.0019 4_[+2]_68 chr2:145648627-145648707 0.0019 15_[+2]_57 chr4:2023538-2023618 0.002 32_[+2]_40 chr19:39695510-39695590 0.002 57_[+2]_15 chr7:511745-511825 0.0022 [+2]_72 chr1:178987185-178987265 0.0023 45_[+2]_27 chr1:161593645-161593725 0.0023 2_[+2]_70 chr11:67122191-67122271 0.0023 28_[+2]_44 chr10:81971691-81971771 0.0023 53_[+2]_19 chr5:118660064-118660144 0.0025 14_[+2]_58 chr7:135175711-135175791 0.0025 59_[+2]_13 chr3:47803879-47803959 0.0026 18_[+2]_54 chr2:202772058-202772138 0.0027 24_[+2]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BHTTCCYD MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BHTTCCYD width=8 seqs=154 chr22:28956503-28956583 ( 27) TTTTCCCA 1 chr2:160471957-160472037 ( 19) TTTTCCCA 1 chr12:49350461-49350541 ( 39) TCTTCCCA 1 chr10:112631399-11263147 ( 7) TTTTCCCA 1 chr12:6445467-6445547 ( 22) TTTTCCCA 1 chr6:135628082-135628162 ( 68) TCTTCCCA 1 chr3:184484553-184484633 ( 15) TTTTCCCA 1 chr11:113505801-11350588 ( 73) TTTTCCCA 1 chr1:29609950-29610030 ( 59) TCTTCCCA 1 chr15:45112950-45113030 ( 4) TTTTCCCA 1 chr4:129784708-129784788 ( 11) CCTTCCCA 1 chr2:128300704-128300784 ( 30) CCTTCCCA 1 chr12:18905612-18905692 ( 8) CCTTCCCA 1 chr17:76983040-76983120 ( 65) TTTTCCTA 1 chr11:5706213-5706293 ( 63) TTTTCCTA 1 chr9:124049410-124049490 ( 39) TTTTCCTA 1 chr6:57039046-57039126 ( 56) TTTTCCTA 1 chr15:65568177-65568257 ( 45) TATTCCCA 1 chr16:57725103-57725183 ( 73) GTTTCCCA 1 chr12:76508260-76508340 ( 10) GCTTCCCA 1 chr19:49468045-49468125 ( 16) GCTTCCCA 1 chr19:55652795-55652875 ( 40) GCTTCCCA 1 chr17:43236030-43236110 ( 71) TATTCCCA 1 chr8:38238779-38238859 ( 7) CTTTCCTA 1 chr12:54690704-54690784 ( 30) TTTTCCCT 1 chr16:15754606-15754686 ( 48) TTTTCCCT 1 chr10:22679257-22679337 ( 18) GCTTCCCA 1 chr11:62166298-62166378 ( 37) TCTTCCCT 1 chr10:106099983-10610006 ( 42) GCTTCCCA 1 chr14:31669487-31669567 ( 46) CCTTCCTA 1 chr2:103038544-103038624 ( 1) GCTTCCCA 1 chr6:28911535-28911615 ( 37) CCTTCCCT 1 chr1:113247682-113247762 ( 16) CCTTCCCT 1 chr3:57204255-57204335 ( 53) TTTTCCCG 1 chr1:249176839-249176919 ( 42) CATTCCCA 1 chr19:48928226-48928306 ( 12) CCTTCCCT 1 chr22:39818860-39818940 ( 20) CTTTCCCT 1 chr16:19733755-19733835 ( 65) CATTCCCA 1 chr8:130694350-130694430 ( 23) CATTCCCA 1 chr16:89028487-89028567 ( 63) CATTCCCA 1 chr15:40593792-40593872 ( 43) CATTCCCA 1 chr2:85726333-85726413 ( 50) TTTTCCTT 1 chr17:39835370-39835450 ( 73) TCTTCCTT 1 chr19:54272536-54272616 ( 22) TCTTCCTT 1 chr16:30609743-30609823 ( 6) TTTTCCTT 1 chr17:47073917-47073997 ( 35) TCTTCCTT 1 chr19:39799679-39799759 ( 4) TATTCCTA 1 chr16:31520631-31520711 ( 3) TTCTCCCA 1 chr2:206949221-206949301 ( 2) TCCTCCCA 1 chr6:28650516-28650596 ( 34) CCTTCCCG 1 chr12:54019555-54019635 ( 65) TTCTCCCA 1 chr12:1686237-1686317 ( 25) CCTTCCCG 1 chr6:30658572-30658652 ( 13) TCCTCCCA 1 chr9:115629760-115629840 ( 42) TCCTCCCA 1 chr19:12722282-12722362 ( 2) TCCTCCCA 1 chr14:31496246-31496326 ( 45) CTTTCCTT 1 chr6:30845575-30845655 ( 43) CTTTCCTT 1 chr19:823782-823862 ( 39) TTTTCCTG 1 chr6:4337128-4337208 ( 54) GTTTCCCT 1 chr17:25730758-25730838 ( 2) GTTTCCCT 1 chr14:23624579-23624659 ( 23) CCTTCCTT 1 chr19:47808713-47808793 ( 24) CATTCCTA 1 chr11:33744910-33744990 ( 16) CCTTCCTT 1 chr14:23341948-23342028 ( 30) TTTTCCAA 1 chr19:49864907-49864987 ( 37) TTTTCCAA 1 chr3:105849787-105849867 ( 17) CCCTCCCA 1 chr16:72106902-72106982 ( 46) CCCTCCCA 1 chr7:26346934-26347014 ( 16) TTTTCCAA 1 chr12:13080552-13080632 ( 38) CCCTCCCA 1 chr5:67716040-67716120 ( 29) CTCTCCCA 1 chr2:47586572-47586652 ( 53) CTCTCCCA 1 chr16:19499836-19499916 ( 48) CCCTCCCA 1 chr6:31782510-31782590 ( 24) TCCTCCTA 1 chr1:246316553-246316633 ( 17) TCCTCCTA 1 chr19:47347544-47347624 ( 28) CCTTCCTG 1 chr19:13262419-13262499 ( 26) CTTTCCTG 1 chr17:45971838-45971918 ( 28) CTTTCCTG 1 chr12:47643827-47643907 ( 4) TCCTCCTA 1 chr3:151984564-151984644 ( 11) CATTCCCT 1 chr19:50872077-50872157 ( 20) CTTTCCTG 1 chr16:21168233-21168313 ( 28) CTTTCCAA 1 chr14:23755626-23755706 ( 60) GTTTCCTT 1 chr19:13212295-13212375 ( 1) TATTCCTT 1 chr7:12753409-12753489 ( 9) TATTCCTT 1 chr11:355970-356050 ( 44) CATTCCCG 1 chr7:150021894-150021974 ( 21) CATTCCCG 1 chr10:75408922-75409002 ( 35) GCCTCCCA 1 chr4:74465193-74465273 ( 14) TCCTCCCT 1 chrX:41189841-41189921 ( 49) GCCTCCCA 1 chr14:69229863-69229943 ( 21) TCCTCCCT 1 chr1:207178409-207178489 ( 44) CATTCCCG 1 chr1:70925582-70925662 ( 4) GTCTCCCA 1 chr6:35993456-35993536 ( 28) TCCTCCCT 1 chr11:65021657-65021737 ( 7) GCCTCCCA 1 chr15:28539807-28539887 ( 53) GCCTCCCA 1 chr12:104802547-10480262 ( 72) GCTTCCTG 1 chr7:142654337-142654417 ( 25) TATTCCTG 1 chr1:228273235-228273315 ( 15) GTTTCCTG 1 chr1:109740819-109740899 ( 46) GCTTCCTG 1 chr1:65784153-65784233 ( 33) GATTCCCT 1 chr11:72446760-72446840 ( 62) TATTCCTG 1 chr15:66162963-66163043 ( 16) GCTTCCTG 1 chr6:138241077-138241157 ( 15) CATTCCTT 1 chr1:145542922-145543002 ( 64) GCTTCCTG 1 chr10:76868494-76868574 ( 29) GTTTCCTG 1 chr6:33480043-33480123 ( 19) CATTCCTT 1 chr1:24765170-24765250 ( 21) GATTCCCT 1 chr9:130922245-130922325 ( 38) TCCTCCCG 1 chr10:75757653-75757733 ( 40) CCCTCCCT 1 chr20:51797675-51797755 ( 60) TTTTCCAT 1 chr15:44719209-44719289 ( 27) CTCTCCCT 1 chr10:5521695-5521775 ( 1) GTTTCCAA 1 chr1:207206108-207206188 ( 15) CCCTCCCT 1 chr21:40692012-40692092 ( 31) GTTTCCAA 1 chr19:40512266-40512346 ( 32) TCTTCCAT 1 chr8:95761819-95761899 ( 45) GTTTCCAA 1 chr15:80448378-80448458 ( 14) GCCTCCTA 1 chr20:39679073-39679153 ( 43) TTCTCCTT 1 chr3:149294116-149294196 ( 1) ACTTCCCA 1 chrX:49047324-49047404 ( 20) TCCTCCTT 1 chr3:32741072-32741152 ( 40) ACTTCCCA 1 chr20:52534108-52534188 ( 2) TTTTCCAG 1 chr9:132520648-132520728 ( 32) CTTTCCAT 1 chr7:73237025-73237105 ( 66) GATTCCTT 1 chr6:43979909-43979989 ( 41) CATTCCAA 1 chr2:48338568-48338648 ( 26) CCCTCCCG 1 chr12:50435787-50435867 ( 20) CCCTCCCG 1 chr3:52334312-52334392 ( 39) GACTCCCA 1 chr1:101360474-101360554 ( 41) TTCTCCAA 1 chr1:28605434-28605514 ( 27) TTCTCCAA 1 chr2:219262625-219262705 ( 61) GATTCCTG 1 chr19:49652503-49652583 ( 3) CTTTCCAG 1 chr2:197104545-197104625 ( 8) ATTTCCTA 1 chr17:70903216-70903296 ( 58) CCCTCCTG 1 chr8:59584737-59584817 ( 6) TATTCCAT 1 chr1:176850203-176850283 ( 36) CTCTCCTG 1 chr8:28745690-28745770 ( 37) AATTCCCA 1 chr1:33560778-33560858 ( 36) GCCTCCTT 1 chr2:228270994-228271074 ( 66) AATTCCCA 1 chr18:9005578-9005658 ( 49) GCTTCCAG 1 chr8:59466472-59466552 ( 6) GTTTCCAG 1 chr11:72364508-72364588 ( 5) CACTCCCG 1 chr2:145648627-145648707 ( 16) TATTCCAG 1 chr4:2023538-2023618 ( 33) GCCTCCTG 1 chr19:39695510-39695590 ( 58) GCCTCCTG 1 chr7:511745-511825 ( 1) GACTCCCG 1 chr1:178987185-178987265 ( 46) TTCTCCAG 1 chr1:161593645-161593725 ( 3) ATTTCCTG 1 chr11:67122191-67122271 ( 29) ACTTCCTG 1 chr10:81971691-81971771 ( 54) TCCTCCAG 1 chr5:118660064-118660144 ( 15) GTCTCCAT 1 chr7:135175711-135175791 ( 60) GACTCCAA 1 chr3:47803879-47803959 ( 19) AATTCCTG 1 chr2:202772058-202772138 ( 25) ACCTCCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BHTTCCYD MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.06546 E= 1.1e-034 -207 30 -10 70 -19 71 -1391 65 -1391 24 -1391 158 -1391 -1391 -1391 211 -1391 195 -1391 -1391 -1391 195 -1391 -1391 -71 97 -1391 57 95 -1391 -6 23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BHTTCCYD MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 154 E= 1.1e-034 0.058442 0.318182 0.246753 0.376623 0.214286 0.422078 0.000000 0.363636 0.000000 0.305195 0.000000 0.694805 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.149351 0.506494 0.000000 0.344156 0.474026 0.000000 0.253247 0.272727 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BHTTCCYD MEME-2 regular expression -------------------------------------------------------------------------------- [TCG][CTA][TC]TCC[CT][ATG] -------------------------------------------------------------------------------- Time 8.57 secs. ******************************************************************************** ******************************************************************************** MOTIF CTTATCTC MEME-3 width = 8 sites = 23 llr = 219 E-value = 4.9e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTTATCTC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :1:9::3: pos.-specific C a::1:a:8 probability G :::::::2 matrix T :9a:a:7: bits 2.1 * * 1.9 * * ** 1.7 *** ** 1.5 ****** Relative 1.3 ******** Entropy 1.1 ******** (13.7 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTTATCTC consensus AG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCTC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr16:31520631-31520711 66 1.22e-05 CCCACTTCGC CTTATCTC ACACAAA chr19:49468045-49468125 39 1.22e-05 CCGGAGACTC CTTATCTC GCAGCGCAAA chr1:26109413-26109493 34 1.22e-05 CAGTTTCTCG CTTATCTC CCCAGGTTGC chr4:74465193-74465273 66 1.22e-05 ATGCTCCTGA CTTATCTC ACCCTTT chr1:161593645-161593725 47 1.22e-05 GGAAGACACC CTTATCTC TGGGCTCAGA chr8:59584737-59584817 48 1.22e-05 atgccttcct cttatctc aactgccaag chr19:49652503-49652583 44 1.22e-05 ATTCAGCAAC CTTATCTC CTTAGGCACA chr12:31884929-31885009 47 1.22e-05 GTTTTTGTGG CTTATCTC TGGAGGCAAA chr11:72446760-72446840 11 1.22e-05 CAGGAAACTA CTTATCTC CCTGAGAAAA chr3:52334312-52334392 30 1.22e-05 AGTTCCCTTT CTTATCTC AGACTCCCAG chr19:51244680-51244760 58 2.51e-05 caaggaatat cttatcac atcccactgg chr6:135628082-135628162 49 2.51e-05 TTCCTAATCT CTTATCAC TAGGGAATAG chr10:93351256-93351336 13 2.51e-05 ccttgccacg cttatcac tgtttacata chr19:40512266-40512346 11 3.76e-05 CCTGTTTTCT CTTATCTG TGCTCAAACA chr11:117780828-11778090 13 3.76e-05 GCTTTGCTCC CTTATCTG CTACACACAG chr15:65568177-65568257 24 5.04e-05 GCTGAGTCAT CTTCTCTC CAAAGATTAC chr19:48928226-48928306 52 5.04e-05 CAGATtctct cttctctc tctctctctc chr19:47347544-47347624 7 5.04e-05 tgttat cttctctc tttcatctcc chr17:70903216-70903296 68 7.65e-05 CCCTCCTGCT CATATCTC TTCCT chr12:76508260-76508340 29 7.65e-05 AGCATGCATG CTTATCAG CTGTATGCAA chr3:122799807-122799887 47 7.65e-05 taagaagact cttatcag atgtctgtta chr2:128300704-128300784 44 7.65e-05 cccacgaggc catatctc aggctatcac chr5:139596191-139596271 24 7.65e-05 CTTGGAAAAT CTTATCAG CTTGTACCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCTC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:31520631-31520711 1.2e-05 65_[+3]_7 chr19:49468045-49468125 1.2e-05 38_[+3]_34 chr1:26109413-26109493 1.2e-05 33_[+3]_39 chr4:74465193-74465273 1.2e-05 65_[+3]_7 chr1:161593645-161593725 1.2e-05 46_[+3]_26 chr8:59584737-59584817 1.2e-05 47_[+3]_25 chr19:49652503-49652583 1.2e-05 43_[+3]_29 chr12:31884929-31885009 1.2e-05 46_[+3]_26 chr11:72446760-72446840 1.2e-05 10_[+3]_62 chr3:52334312-52334392 1.2e-05 29_[+3]_43 chr19:51244680-51244760 2.5e-05 57_[+3]_15 chr6:135628082-135628162 2.5e-05 48_[+3]_24 chr10:93351256-93351336 2.5e-05 12_[+3]_60 chr19:40512266-40512346 3.8e-05 10_[+3]_62 chr11:117780828-11778090 3.8e-05 12_[+3]_60 chr15:65568177-65568257 5e-05 23_[+3]_49 chr19:48928226-48928306 5e-05 51_[+3]_21 chr19:47347544-47347624 5e-05 6_[+3]_66 chr17:70903216-70903296 7.7e-05 67_[+3]_5 chr12:76508260-76508340 7.7e-05 28_[+3]_44 chr3:122799807-122799887 7.7e-05 46_[+3]_26 chr2:128300704-128300784 7.7e-05 43_[+3]_29 chr5:139596191-139596271 7.7e-05 23_[+3]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCTC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTTATCTC width=8 seqs=23 chr16:31520631-31520711 ( 66) CTTATCTC 1 chr19:49468045-49468125 ( 39) CTTATCTC 1 chr1:26109413-26109493 ( 34) CTTATCTC 1 chr4:74465193-74465273 ( 66) CTTATCTC 1 chr1:161593645-161593725 ( 47) CTTATCTC 1 chr8:59584737-59584817 ( 48) CTTATCTC 1 chr19:49652503-49652583 ( 44) CTTATCTC 1 chr12:31884929-31885009 ( 47) CTTATCTC 1 chr11:72446760-72446840 ( 11) CTTATCTC 1 chr3:52334312-52334392 ( 30) CTTATCTC 1 chr19:51244680-51244760 ( 58) CTTATCAC 1 chr6:135628082-135628162 ( 49) CTTATCAC 1 chr10:93351256-93351336 ( 13) CTTATCAC 1 chr19:40512266-40512346 ( 11) CTTATCTG 1 chr11:117780828-11778090 ( 13) CTTATCTG 1 chr15:65568177-65568257 ( 24) CTTCTCTC 1 chr19:48928226-48928306 ( 52) CTTCTCTC 1 chr19:47347544-47347624 ( 7) CTTCTCTC 1 chr17:70903216-70903296 ( 68) CATATCTC 1 chr12:76508260-76508340 ( 29) CTTATCAG 1 chr3:122799807-122799887 ( 47) CTTATCAG 1 chr2:128300704-128300784 ( 44) CATATCTC 1 chr5:139596191-139596271 ( 24) CTTATCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCTC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.6953 E= 4.9e-006 -1117 195 -1117 -1117 -149 -1117 -1117 198 -1117 -1117 -1117 211 183 -99 -1117 -1117 -1117 -1117 -1117 211 -1117 195 -1117 -1117 9 -1117 -1117 167 -1117 160 -28 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCTC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 4.9e-006 0.000000 1.000000 0.000000 0.000000 0.086957 0.000000 0.000000 0.913043 0.000000 0.000000 0.000000 1.000000 0.869565 0.130435 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.260870 0.000000 0.000000 0.739130 0.000000 0.782609 0.217391 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCTC MEME-3 regular expression -------------------------------------------------------------------------------- CTTATC[TA][CG] -------------------------------------------------------------------------------- Time 11.85 secs. ******************************************************************************** ******************************************************************************** MOTIF GAGATAAG MEME-4 width = 8 sites = 29 llr = 249 E-value = 1.7e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGATAAG MEME-4 Description -------------------------------------------------------------------------------- Simplified A 27:a1a8: pos.-specific C 1::::::1 probability G 7:a::::9 matrix T :3::9:2: bits 2.1 * * 1.9 ** * 1.7 **** 1.5 ****** Relative 1.3 ******* Entropy 1.1 ******* (12.4 bits) 0.8 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAGATAAG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGATAAG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr18:9005578-9005658 69 1.56e-05 CTGCAGGACA GAGATAAG AAGC chr22:23876198-23876278 59 1.56e-05 cggaaagagg gagataag gagcgggagg chr5:122199060-122199140 49 1.56e-05 agagtgataa gagataag gtcatatata chr8:91233669-91233749 14 1.56e-05 agtgggaagt gagataag gaagggaaga chr4:2023538-2023618 13 1.56e-05 ctttgcagtt gagataag aggaaggctt chr12:50435787-50435867 61 1.56e-05 TCTGGGAAAG GAGATAAG GCAGTTTCTT chr11:113505801-11350588 30 1.56e-05 CTGGACAGAA GAGATAAG CTCCAAGGCC chr20:39679073-39679153 69 3.03e-05 CTGTAAAGTA GTGATAAG GACT chr17:45589465-45589545 11 3.03e-05 CCTCCTAAGT GTGATAAG AGCCTGGATT chr2:27478291-27478371 48 3.03e-05 CTGTGGGAGA GTGATAAG AGGCGGCATC chr8:95761819-95761899 26 3.03e-05 gaggaagtta gtgataag aggtcagagg chr15:91379704-91379784 71 4.47e-05 GTCCCAGCTA AAGATAAG AT chr22:39818860-39818940 53 4.47e-05 CTGACTGGCT AAGATAAG TTCAGTTTGT chr7:135175711-135175791 34 4.47e-05 gttggataag aagataag acagcaagag chr8:59466472-59466552 56 5.94e-05 TCTGACCCCT GAGATATG ATGACTCAGA chr6:28650516-28650596 1 5.94e-05 . gagatatg gcctcctggg chr3:75442633-75442713 72 5.94e-05 gtgatagcct gagatatg g chr7:107731391-107731471 10 7.45e-05 CTGTCCTTA CAGATAAG GAAGAGATTC chr10:38292638-38292718 71 7.45e-05 ctggtgagta cagataag gc chr5:148186199-148186279 52 8.82e-05 agaggaaacg atgataag actgagagct chr10:106099983-10610006 54 1.02e-04 ttcccagaac gtgatatg ctctttgata chr15:85365111-85365191 54 1.32e-04 actgttcatg ctgataag ggacaggcct chr11:95815772-95815852 41 1.32e-04 AAAAGCAATA GAGATAAC TAGAACGCCA chr17:76132203-76132283 47 1.32e-04 TTCACCCTTA GAGATAAC ACGCAAccag chr10:104223255-10422333 32 1.32e-04 ATTTGGATGC CTGATAAG GGGGAAAACG chr1:161472960-161473040 65 1.48e-04 TATAAAGTCT GAGAAAAG TTTTAGGA chr11:72446760-72446840 22 1.48e-04 TTATCTCCCT GAGAAAAG CCTGGCTCCC chr19:40337713-40337793 44 1.75e-04 tgaggaagga aagatatg ggaagttgga chr6:35993456-35993536 68 1.75e-04 CATGTTTTTG TAGATAAG AGAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGATAAG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr18:9005578-9005658 1.6e-05 68_[+4]_4 chr22:23876198-23876278 1.6e-05 58_[+4]_14 chr5:122199060-122199140 1.6e-05 48_[+4]_24 chr8:91233669-91233749 1.6e-05 13_[+4]_59 chr4:2023538-2023618 1.6e-05 12_[+4]_60 chr12:50435787-50435867 1.6e-05 60_[+4]_12 chr11:113505801-11350588 1.6e-05 29_[+4]_43 chr20:39679073-39679153 3e-05 68_[+4]_4 chr17:45589465-45589545 3e-05 10_[+4]_62 chr2:27478291-27478371 3e-05 47_[+4]_25 chr8:95761819-95761899 3e-05 25_[+4]_47 chr15:91379704-91379784 4.5e-05 70_[+4]_2 chr22:39818860-39818940 4.5e-05 52_[+4]_20 chr7:135175711-135175791 4.5e-05 33_[+4]_39 chr8:59466472-59466552 5.9e-05 55_[+4]_17 chr6:28650516-28650596 5.9e-05 [+4]_72 chr3:75442633-75442713 5.9e-05 71_[+4]_1 chr7:107731391-107731471 7.5e-05 9_[+4]_63 chr10:38292638-38292718 7.5e-05 70_[+4]_2 chr5:148186199-148186279 8.8e-05 51_[+4]_21 chr10:106099983-10610006 0.0001 53_[+4]_19 chr15:85365111-85365191 0.00013 53_[+4]_19 chr11:95815772-95815852 0.00013 40_[+4]_32 chr17:76132203-76132283 0.00013 46_[+4]_26 chr10:104223255-10422333 0.00013 31_[+4]_41 chr1:161472960-161473040 0.00015 64_[+4]_8 chr11:72446760-72446840 0.00015 21_[+4]_51 chr19:40337713-40337793 0.00018 43_[+4]_29 chr6:35993456-35993536 0.00018 67_[+4]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGATAAG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGATAAG width=8 seqs=29 chr18:9005578-9005658 ( 69) GAGATAAG 1 chr22:23876198-23876278 ( 59) GAGATAAG 1 chr5:122199060-122199140 ( 49) GAGATAAG 1 chr8:91233669-91233749 ( 14) GAGATAAG 1 chr4:2023538-2023618 ( 13) GAGATAAG 1 chr12:50435787-50435867 ( 61) GAGATAAG 1 chr11:113505801-11350588 ( 30) GAGATAAG 1 chr20:39679073-39679153 ( 69) GTGATAAG 1 chr17:45589465-45589545 ( 11) GTGATAAG 1 chr2:27478291-27478371 ( 48) GTGATAAG 1 chr8:95761819-95761899 ( 26) GTGATAAG 1 chr15:91379704-91379784 ( 71) AAGATAAG 1 chr22:39818860-39818940 ( 53) AAGATAAG 1 chr7:135175711-135175791 ( 34) AAGATAAG 1 chr8:59466472-59466552 ( 56) GAGATATG 1 chr6:28650516-28650596 ( 1) GAGATATG 1 chr3:75442633-75442713 ( 72) GAGATATG 1 chr7:107731391-107731471 ( 10) CAGATAAG 1 chr10:38292638-38292718 ( 71) CAGATAAG 1 chr5:148186199-148186279 ( 52) ATGATAAG 1 chr10:106099983-10610006 ( 54) GTGATATG 1 chr15:85365111-85365191 ( 54) CTGATAAG 1 chr11:95815772-95815852 ( 41) GAGATAAC 1 chr17:76132203-76132283 ( 47) GAGATAAC 1 chr10:104223255-10422333 ( 32) CTGATAAG 1 chr1:161472960-161473040 ( 65) GAGAAAAG 1 chr11:72446760-72446840 ( 22) GAGAAAAG 1 chr19:40337713-40337793 ( 44) AAGATATG 1 chr6:35993456-35993536 ( 68) TAGATAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGATAAG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.5458 E= 1.7e-001 -51 -91 131 -275 156 -1150 -1150 25 -1150 -1150 192 -1150 203 -1150 -1150 -1150 -183 -1150 -1150 201 203 -1150 -1150 -1150 176 -1150 -1150 -43 -1150 -190 181 -1150 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGATAAG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 1.7e-001 0.172414 0.137931 0.655172 0.034483 0.724138 0.000000 0.000000 0.275862 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.068966 0.000000 0.000000 0.931034 1.000000 0.000000 0.000000 0.000000 0.827586 0.000000 0.000000 0.172414 0.000000 0.068966 0.931034 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGATAAG MEME-4 regular expression -------------------------------------------------------------------------------- G[AT]GATAAG -------------------------------------------------------------------------------- Time 15.08 secs. ******************************************************************************** ******************************************************************************** MOTIF RTGASTCA MEME-5 width = 8 sites = 18 llr = 169 E-value = 2.2e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif RTGASTCA MEME-5 Description -------------------------------------------------------------------------------- Simplified A 3::a:::a pos.-specific C 2:::5:a: probability G 5:a:5::: matrix T :a:::a:: bits 2.1 * * * * 1.9 *** *** 1.7 *** *** 1.5 *** *** Relative 1.3 *** *** Entropy 1.1 *** *** (13.5 bits) 0.8 ******* 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTGACTCA consensus A G sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGASTCA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:202033897-202033977 38 3.06e-05 gctgggcgcg gtgactca tgcctgtaat chr2:85726333-85726413 28 3.06e-05 gattagaggc gtgagtca ccacgcccag chr9:124049410-124049490 73 3.06e-05 GGGCCTCTGG GTGACTCA chr7:142654337-142654417 42 3.06e-05 ggaagcagca gtgagtca gcatggcttg chr7:26346934-26347014 69 3.06e-05 cacccggcct gtgagtca tcct chr17:76132203-76132283 70 3.06e-05 Accaggcaca gtgactca cgc chr12:6445467-6445547 44 3.06e-05 CTCCGCCCCA GTGACTCA GGCCAGAGGG chr6:42670061-42670141 36 3.06e-05 CATTAGGACA GTGACTCA TTTAAAGGAA chr11:62166298-62166378 72 3.06e-05 gccaggcgca gtgactca t chr17:76983040-76983120 40 5.89e-05 agctgcttgc atgactca gctctcagct chr6:43979909-43979989 72 5.89e-05 TGTTGAATGG ATGACTCA G chr8:59466472-59466552 64 5.89e-05 CTGAGATATG ATGACTCA GAGCCTTCC chr3:151984564-151984644 21 5.89e-05 CATTCCCTGC ATGAGTCA TTTTTCCAGT chr9:103191739-103191819 21 5.89e-05 ggatacagcg atgagtca gaaattatgt chr15:65568177-65568257 15 8.87e-05 AGAGCCAGAG CTGAGTCA TCTTCTCTCC chr7:73237025-73237105 23 8.87e-05 AATACGATCT CTGAGTCA CCCCGAAATG chr17:7746338-7746418 58 8.87e-05 TTAGGGAAAG CTGAGTCA GTTCCCCGTG chr7:50427781-50427861 20 8.87e-05 CTCCTCTGTG CTGAGTCA CCTTCTGCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGASTCA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:202033897-202033977 3.1e-05 37_[+5]_35 chr2:85726333-85726413 3.1e-05 27_[+5]_45 chr9:124049410-124049490 3.1e-05 72_[+5] chr7:142654337-142654417 3.1e-05 41_[+5]_31 chr7:26346934-26347014 3.1e-05 68_[+5]_4 chr17:76132203-76132283 3.1e-05 69_[+5]_3 chr12:6445467-6445547 3.1e-05 43_[+5]_29 chr6:42670061-42670141 3.1e-05 35_[+5]_37 chr11:62166298-62166378 3.1e-05 71_[+5]_1 chr17:76983040-76983120 5.9e-05 39_[+5]_33 chr6:43979909-43979989 5.9e-05 71_[+5]_1 chr8:59466472-59466552 5.9e-05 63_[+5]_9 chr3:151984564-151984644 5.9e-05 20_[+5]_52 chr9:103191739-103191819 5.9e-05 20_[+5]_52 chr15:65568177-65568257 8.9e-05 14_[+5]_58 chr7:73237025-73237105 8.9e-05 22_[+5]_50 chr17:7746338-7746418 8.9e-05 57_[+5]_15 chr7:50427781-50427861 8.9e-05 19_[+5]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGASTCA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RTGASTCA width=8 seqs=18 chr1:202033897-202033977 ( 38) GTGACTCA 1 chr2:85726333-85726413 ( 28) GTGAGTCA 1 chr9:124049410-124049490 ( 73) GTGACTCA 1 chr7:142654337-142654417 ( 42) GTGAGTCA 1 chr7:26346934-26347014 ( 69) GTGAGTCA 1 chr17:76132203-76132283 ( 70) GTGACTCA 1 chr12:6445467-6445547 ( 44) GTGACTCA 1 chr6:42670061-42670141 ( 36) GTGACTCA 1 chr11:62166298-62166378 ( 72) GTGACTCA 1 chr17:76983040-76983120 ( 40) ATGACTCA 1 chr6:43979909-43979989 ( 72) ATGACTCA 1 chr8:59466472-59466552 ( 64) ATGACTCA 1 chr3:151984564-151984644 ( 21) ATGAGTCA 1 chr9:103191739-103191819 ( 21) ATGAGTCA 1 chr15:65568177-65568257 ( 15) CTGAGTCA 1 chr7:73237025-73237105 ( 23) CTGAGTCA 1 chr17:7746338-7746418 ( 58) CTGAGTCA 1 chr7:50427781-50427861 ( 20) CTGAGTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGASTCA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1187 E= 2.2e+001 18 -22 92 -1081 -1081 -1081 -1081 211 -1081 -1081 192 -1081 203 -1081 -1081 -1081 -1081 95 92 -1081 -1081 -1081 -1081 211 -1081 195 -1081 -1081 203 -1081 -1081 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGASTCA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 2.2e+001 0.277778 0.222222 0.500000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGASTCA MEME-5 regular expression -------------------------------------------------------------------------------- [GAC]TGA[CG]TCA -------------------------------------------------------------------------------- Time 18.28 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:138276863-138276943 7.94e-01 80 chr2:228270994-228271074 2.25e-01 80 chr7:12753409-12753489 8.21e-03 80 chr10:70778535-70778615 1.58e-01 80 chr11:76534737-76534817 1.01e-01 80 chr19:50872077-50872157 1.20e-01 80 chr15:40593792-40593872 1.10e-02 80 chr7:135175711-135175791 4.33e-03 33_[+4(4.47e-05)]_39 chr19:39799679-39799759 2.74e-02 80 chr2:103038544-103038624 7.72e-02 80 chr15:28539807-28539887 2.99e-03 2_[+2(2.57e-05)]_70 chr15:45112950-45113030 9.99e-03 3_[+2(2.57e-05)]_69 chr1:29609950-29610030 3.32e-02 58_[+2(2.57e-05)]_14 chr7:50427781-50427861 5.75e-03 19_[+5(8.87e-05)]_53 chr11:65021657-65021737 2.51e-01 80 chr19:12722282-12722362 4.33e-01 80 chr9:103191739-103191819 1.61e-02 20_[+5(5.89e-05)]_52 chr3:151984564-151984644 2.84e-02 20_[+5(5.89e-05)]_52 chr5:118660064-118660144 3.21e-01 80 chr10:25337004-25337084 3.57e-01 80 chr1:24765170-24765250 7.04e-02 80 chr19:47366357-47366437 5.12e-01 80 chr16:29955386-29955466 2.40e-01 80 chr6:33480043-33480123 1.63e-02 56_[+1(3.60e-05)]_16 chr3:152769351-152769431 1.17e-01 80 chr16:19499836-19499916 1.07e-01 80 chr7:100182799-100182879 3.33e-01 80 chr3:75442633-75442713 9.35e-03 71_[+4(5.94e-05)]_1 chr14:31669487-31669567 2.72e-03 80 chr10:76868494-76868574 8.37e-02 80 chr11:113505801-11350588 7.91e-05 29_[+4(1.56e-05)]_35_[+2(2.57e-05)] chr1:33560778-33560858 3.82e-01 80 chr5:139596191-139596271 2.19e-02 23_[+3(7.65e-05)]_49 chr11:33744910-33744990 4.76e-03 20_[+3(9.01e-05)]_52 chr19:39695510-39695590 6.14e-02 80 chr16:57834550-57834630 1.64e-02 80 chr9:115629760-115629840 2.49e-01 80 chr2:145648627-145648707 2.01e-01 80 chr1:176850203-176850283 1.10e-01 80 chr1:145542922-145543002 3.83e-01 80 chr16:89028487-89028567 2.44e-01 80 chr3:32741072-32741152 1.34e-02 80 chr2:197104545-197104625 8.08e-03 80 chr10:104223255-10422333 5.23e-02 80 chr12:18905612-18905692 1.14e-02 7_[+2(5.44e-05)]_65 chr10:81971691-81971771 1.37e-02 67_[+1(3.60e-05)]_5 chr6:112193443-112193523 5.23e-01 80 chr2:47586572-47586652 3.40e-02 80 chr19:47808713-47808793 2.64e-02 80 chr3:52334312-52334392 1.16e-03 29_[+3(1.22e-05)]_43 chr8:95761819-95761899 3.24e-03 25_[+4(3.03e-05)]_47 chr9:73053609-73053689 3.02e-01 80 chr10:106099983-10610006 7.22e-03 80 chr1:111715239-111715319 1.10e-01 80 chr12:47643827-47643907 6.23e-02 80 chr17:39949234-39949314 5.26e-02 80 chr10:93351256-93351336 1.53e-02 12_[+3(2.51e-05)]_60 chr6:27264156-27264236 6.88e-02 48_[+1(8.61e-05)]_24 chr6:30658572-30658652 4.67e-01 80 chrX:49047324-49047404 2.62e-01 80 chr11:117780828-11778090 8.88e-02 12_[+3(3.76e-05)]_60 chr11:62166298-62166378 2.86e-03 71_[+5(3.06e-05)]_1 chr8:130694350-130694430 1.67e-02 80 chr16:11065581-11065661 5.77e-02 80 chr19:46018487-46018567 8.89e-02 44_[+1(8.61e-05)]_28 chr17:7746338-7746418 6.09e-02 57_[+5(8.87e-05)]_15 chr10:22679257-22679337 4.41e-02 80 chr2:128300704-128300784 8.03e-04 29_[+2(5.44e-05)]_6_[+3(7.65e-05)]_\ 29 chr16:15754606-15754686 1.87e-03 80 chr12:50435787-50435867 1.49e-03 60_[+4(1.56e-05)]_12 chr2:55287140-55287220 1.70e-01 80 chr17:47073917-47073997 2.74e-02 80 chr7:64310026-64310106 1.84e-01 80 chr5:67716040-67716120 4.38e-03 80 chr22:39339247-39339327 1.16e-01 80 chr1:41306752-41306832 1.04e-01 80 chr6:138241077-138241157 3.09e-02 80 chr3:71962241-71962321 2.10e-01 80 chr6:35993456-35993536 1.79e-02 80 chr16:19733755-19733835 2.40e-03 80 chr15:66162963-66163043 4.03e-02 80 chr12:54690704-54690784 1.52e-01 80 chr10:38292638-38292718 2.19e-02 70_[+4(7.45e-05)]_2 chr17:45971838-45971918 6.87e-02 80 chr1:234866530-234866610 1.61e-01 80 chr3:122799807-122799887 2.53e-03 46_[+3(7.65e-05)]_26 chr17:259897-259977 7.14e-01 80 chr10:27389423-27389503 7.49e-01 80 chr2:217942751-217942831 4.79e-02 80 chr11:72446760-72446840 1.26e-04 10_[+3(1.22e-05)]_62 chr19:51326690-51326770 8.14e-02 80 chr8:28745690-28745770 4.83e-01 80 chr19:40337713-40337793 2.58e-02 80 chr3:184484553-184484633 1.71e-02 14_[+2(2.57e-05)]_58 chr19:40512266-40512346 4.16e-02 10_[+3(3.76e-05)]_62 chr6:135628082-135628162 3.48e-04 48_[+3(2.51e-05)]_11_[+2(2.57e-05)]_\ 5 chr12:31884929-31885009 1.88e-03 46_[+3(1.22e-05)]_26 chr12:1686237-1686317 1.53e-02 66_[+1(3.60e-05)]_6 chr8:38238779-38238859 8.99e-02 80 chr1:246599029-246599109 8.10e-01 80 chr16:89070319-89070399 3.74e-01 80 chr17:43236030-43236110 6.61e-02 80 chr19:55652795-55652875 1.05e-01 80 chr1:24164140-24164220 1.69e-01 25_[+1(7.01e-05)]_47 chr1:249208205-249208285 4.78e-01 80 chr7:5465278-5465358 7.94e-02 80 chr3:149294116-149294196 3.61e-02 80 chr19:49652503-49652583 7.78e-03 43_[+3(1.22e-05)]_29 chr14:23624579-23624659 3.59e-01 80 chr1:70925582-70925662 8.09e-02 80 chr2:219262625-219262705 1.74e-01 80 chr6:42670061-42670141 1.93e-02 35_[+5(3.06e-05)]_37 chr4:120133566-120133646 7.26e-01 80 chr22:41065135-41065215 7.46e-02 38_[+1(7.01e-05)]_34 chr8:59584737-59584817 9.91e-05 17_[+1(3.60e-05)]_22_[+3(1.22e-05)]_\ 25 chr12:130144606-13014468 2.93e-01 80 chr11:16115976-16116056 1.69e-02 18_[+1(1.73e-05)]_54 chr2:48338568-48338648 2.66e-01 80 chr17:49198436-49198516 5.59e-01 80 chr1:207178409-207178489 2.96e-02 80 chr1:65784153-65784233 5.01e-02 80 chr6:57039046-57039126 1.28e-03 55_[+2(7.75e-05)]_17 chr2:27478291-27478371 3.33e-02 47_[+4(3.03e-05)]_25 chr19:51244680-51244760 5.75e-03 57_[+3(2.51e-05)]_15 chr16:30609743-30609823 2.44e-02 80 chr17:45589465-45589545 3.51e-02 10_[+4(3.03e-05)]_62 chr7:35841594-35841674 1.49e-01 51_[+1(7.01e-05)]_21 chr22:39818860-39818940 1.14e-03 52_[+4(4.47e-05)]_20 chr12:54019555-54019635 6.30e-02 80 chr5:81718720-81718800 7.07e-02 80 chr20:48304840-48304920 9.74e-01 80 chr11:67122191-67122271 3.38e-01 80 chr6:119537528-119537608 1.49e-01 80 chr11:69796934-69797014 1.46e-01 80 chr6:36788802-36788882 9.01e-02 80 chr19:45946819-45946899 5.33e-01 80 chr15:91379704-91379784 1.82e-02 70_[+4(4.47e-05)]_2 chr20:39679073-39679153 1.31e-02 68_[+4(3.03e-05)]_4 chr4:2023538-2023618 2.70e-03 12_[+4(1.56e-05)]_60 chr17:25730758-25730838 7.42e-02 80 chr1:109740819-109740899 5.69e-02 80 chr2:191184660-191184740 5.90e-01 80 chr8:91233669-91233749 8.09e-04 13_[+4(1.56e-05)]_59 chr12:6445467-6445547 1.15e-04 21_[+2(2.57e-05)]_14_[+5(3.06e-05)]_\ 29 chr19:6199592-6199672 3.32e-01 80 chr14:69229863-69229943 1.34e-01 80 chrX:41189841-41189921 1.14e-01 80 chr21:40692012-40692092 4.25e-02 80 chr7:511745-511825 2.56e-01 80 chr19:54272536-54272616 9.81e-02 80 chr2:136743289-136743369 5.64e-01 80 chr17:1617262-1617342 2.25e-01 80 chr4:129784708-129784788 3.22e-03 10_[+2(5.44e-05)]_16_[+1(7.01e-05)]_\ 38 chr1:161593645-161593725 8.58e-03 46_[+3(1.22e-05)]_26 chr5:122199060-122199140 1.18e-02 48_[+4(1.56e-05)]_24 chr17:76132203-76132283 1.45e-04 69_[+5(3.06e-05)]_3 chr11:72364508-72364588 2.50e-02 80 chr1:228273235-228273315 3.12e-03 72_[+1(7.01e-05)] chr19:13262419-13262499 1.97e-01 80 chr17:39835370-39835450 1.66e-02 80 chr7:123174949-123175029 3.43e-01 80 chr1:28605434-28605514 6.70e-02 80 chr12:64615625-64615705 1.41e-02 [+1(3.60e-05)]_72 chr1:156092712-156092792 3.41e-01 80 chr2:122369346-122369426 5.95e-01 80 chr2:202645766-202645846 5.37e-01 80 chr4:74465193-74465273 6.32e-05 65_[+3(1.22e-05)]_7 chr19:13212295-13212375 1.23e-01 80 chr6:28650516-28650596 1.27e-03 [+4(5.94e-05)]_5_[+1(7.01e-05)]_59 chr6:4337128-4337208 2.00e-02 80 chr12:13080552-13080632 4.16e-01 80 chr7:26346934-26347014 5.58e-03 68_[+5(3.06e-05)]_4 chr22:23876198-23876278 1.74e-02 58_[+4(1.56e-05)]_14 chr16:72106902-72106982 7.54e-02 80 chr10:112631399-11263147 1.17e-01 6_[+2(2.57e-05)]_66 chr10:74004856-74004936 1.30e-01 80 chr1:200639274-200639354 6.93e-01 80 chr1:207206108-207206188 7.50e-02 80 chr7:142654337-142654417 1.99e-03 41_[+5(3.06e-05)]_31 chr22:43671697-43671777 1.84e-01 80 chr19:47347544-47347624 1.61e-02 6_[+3(5.04e-05)]_66 chr12:49350461-49350541 2.04e-02 38_[+2(2.57e-05)]_34 chr15:80448378-80448458 2.20e-02 80 chr2:206949221-206949301 1.12e-01 80 chr10:5521695-5521775 1.29e-02 80 chr9:124049410-124049490 2.49e-05 38_[+2(7.75e-05)]_26_[+5(3.06e-05)] chr8:103665958-103666038 1.75e-01 61_[+1(7.01e-05)]_11 chr7:77168124-77168204 5.29e-01 80 chr8:59466472-59466552 3.79e-04 55_[+4(5.94e-05)]_[+5(5.89e-05)]_9 chr3:105849787-105849867 1.41e-02 80 chr1:231473622-231473702 8.80e-01 80 chr15:44719209-44719289 3.02e-01 80 chr16:29273260-29273340 1.16e-01 26_[+1(7.01e-05)]_46 chr14:21572577-21572657 4.22e-01 80 chr1:28593551-28593631 9.63e-01 80 chr11:85846075-85846155 1.82e-01 80 chr12:104802547-10480262 1.42e-02 6_[+1(3.60e-05)]_66 chr5:126307314-126307394 1.29e-01 80 chr2:202772058-202772138 2.56e-01 80 chr1:26109413-26109493 5.80e-03 33_[+3(1.22e-05)]_39 chr19:48928226-48928306 6.05e-04 51_[+3(5.04e-05)]_21 chr19:49468045-49468125 3.63e-03 38_[+3(1.22e-05)]_34 chr1:156743033-156743113 1.24e-03 31_[+4(4.47e-05)]_41 chr16:31520631-31520711 8.23e-04 65_[+3(1.22e-05)]_7 chr1:246316553-246316633 1.49e-01 80 chr11:5706213-5706293 2.33e-04 3_[+1(3.60e-05)]_51_[+2(7.75e-05)]_\ 10 chr6:43979909-43979989 1.60e-02 71_[+5(5.89e-05)]_1 chr19:823782-823862 4.25e-01 80 chr1:249176839-249176919 3.13e-02 80 chr7:73237025-73237105 5.99e-03 22_[+5(8.87e-05)]_50 chr2:160471957-160472037 4.94e-02 18_[+2(2.57e-05)]_54 chr6:30845575-30845655 3.37e-01 80 chr2:85726333-85726413 2.85e-03 27_[+5(3.06e-05)]_45 chr12:76508260-76508340 2.93e-03 28_[+3(7.65e-05)]_44 chr20:51797675-51797755 1.61e-01 80 chr3:57204255-57204335 6.24e-02 80 chr19:49864907-49864987 1.98e-02 80 chr10:75757653-75757733 1.99e-01 80 chr14:23755626-23755706 2.50e-01 80 chr1:113247682-113247762 1.88e-02 80 chr14:31496246-31496326 1.22e-02 80 chr15:90732350-90732430 6.77e-02 80 chr1:161472960-161473040 3.90e-02 80 chr16:57725103-57725183 1.88e-02 80 chr17:62084194-62084274 2.92e-01 64_[+1(7.01e-05)]_8 chr10:75408922-75409002 1.00e-01 80 chr1:101360474-101360554 3.12e-01 80 chr7:150021894-150021974 3.03e-01 80 chr15:65568177-65568257 3.29e-04 14_[+5(8.87e-05)]_1_[+3(5.04e-05)]_\ 49 chr17:70903216-70903296 6.49e-03 67_[+3(7.65e-05)]_5 chr11:355970-356050 3.72e-02 35_[+1(8.61e-05)]_37 chr5:148186199-148186279 4.01e-02 51_[+4(8.82e-05)]_21 chr9:130922245-130922325 6.53e-01 80 chr16:21168233-21168313 3.66e-02 80 chr18:9005578-9005658 7.42e-03 68_[+4(1.56e-05)]_4 chr1:178987185-178987265 1.46e-01 80 chr11:95815772-95815852 5.65e-03 80 chr3:47803879-47803959 1.31e-02 47_[+1(7.01e-05)]_25 chr15:41408848-41408928 7.78e-02 80 chr17:76983040-76983120 2.71e-04 39_[+5(5.89e-05)]_17_[+2(7.75e-05)]_\ 8 chr15:85365111-85365191 2.32e-02 80 chr9:132520648-132520728 1.13e-01 80 chr6:31782510-31782590 2.57e-01 80 chr1:202033897-202033977 2.21e-03 37_[+5(3.06e-05)]_35 chr7:107731391-107731471 2.91e-03 9_[+4(7.45e-05)]_63 chr14:23341948-23342028 1.87e-01 80 chr6:28911535-28911615 5.00e-02 80 chr22:28956503-28956583 3.68e-02 26_[+2(2.57e-05)]_46 chr20:52534108-52534188 2.05e-03 41_[+4(1.56e-05)]_31 chr2:85812455-85812535 4.96e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n04.farnam.hpc.yale.internal ********************************************************************************