******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/ID3.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2:100453813-100453893 1.0000 80 chr6:139697928-139698008 1.0000 80 chr5:40735903-40735983 1.0000 80 chr4:147427636-147427716 1.0000 80 chr6:45123390-45123470 1.0000 80 chr1:208076566-208076646 1.0000 80 chr5:169705796-169705876 1.0000 80 chr12:96577625-96577705 1.0000 80 chr7:142506628-142506708 1.0000 80 chr18:21656285-21656365 1.0000 80 chr10:73978289-73978369 1.0000 80 chr20:5103695-5103775 1.0000 80 chr19:14138836-14138916 1.0000 80 chr11:108406270-10840635 1.0000 80 chr9:91435094-91435174 1.0000 80 chr4:2165334-2165414 1.0000 80 chr1:173362415-173362495 1.0000 80 chr9:115911631-115911711 1.0000 80 chr6:136926170-136926250 1.0000 80 chr12:34204581-34204661 1.0000 80 chr10:81961444-81961524 1.0000 80 chr5:137335948-137336028 1.0000 80 chr7:142506861-142506941 1.0000 80 chr6:44942352-44942432 1.0000 80 chr4:26175800-26175880 1.0000 80 chr8:99415193-99415273 1.0000 80 chr9:129949801-129949881 1.0000 80 chr6:138291684-138291764 1.0000 80 chr1:208076766-208076846 1.0000 80 chr15:91459236-91459316 1.0000 80 chr17:16396951-16397031 1.0000 80 chr1:9299807-9299887 1.0000 80 chr3:196242212-196242292 1.0000 80 chr16:14093924-14094004 1.0000 80 chr21:46816024-46816104 1.0000 80 chr5:169705995-169706075 1.0000 80 chr7:73172954-73173034 1.0000 80 chr6:42435527-42435607 1.0000 80 chr15:81281548-81281628 1.0000 80 chr2:104123441-104123521 1.0000 80 chr2:100253158-100253238 1.0000 80 chr2:178031145-178031225 1.0000 80 chr16:14579209-14579289 1.0000 80 chr16:88489966-88490046 1.0000 80 chr8:103820809-103820889 1.0000 80 chr10:30638056-30638136 1.0000 80 chr7:142411583-142411663 1.0000 80 chr9:101648016-101648096 1.0000 80 chr15:102164321-10216440 1.0000 80 chr6:99873924-99874004 1.0000 80 chr1:183315525-183315605 1.0000 80 chr19:14120049-14120129 1.0000 80 chr10:33355965-33356045 1.0000 80 chr1:202791308-202791388 1.0000 80 chr18:68045597-68045677 1.0000 80 chr12:132109853-13210993 1.0000 80 chr1:45103917-45103997 1.0000 80 chr21:36237697-36237777 1.0000 80 chr6:99874125-99874205 1.0000 80 chr6:2999525-2999605 1.0000 80 chr7:95401680-95401760 1.0000 80 chr4:48257577-48257657 1.0000 80 chr1:234664402-234664482 1.0000 80 chr16:12740800-12740880 1.0000 80 chr3:179438125-179438205 1.0000 80 chr7:142502507-142502587 1.0000 80 chr14:38065452-38065532 1.0000 80 chr7:142424513-142424593 1.0000 80 chr16:57855451-57855531 1.0000 80 chr2:69137521-69137601 1.0000 80 chr2:98328898-98328978 1.0000 80 chr20:44611978-44612058 1.0000 80 chr19:35411125-35411205 1.0000 80 chr10:76870027-76870107 1.0000 80 chr6:27499910-27499990 1.0000 80 chr1:43867933-43868013 1.0000 80 chr6:43682199-43682279 1.0000 80 chr8:28572448-28572528 1.0000 80 chr11:63286213-63286293 1.0000 80 chr14:30855287-30855367 1.0000 80 chr5:1132012-1132092 1.0000 80 chr1:109850112-109850192 1.0000 80 chr4:37649920-37650000 1.0000 80 chr14:102154551-10215463 1.0000 80 chr19:45748761-45748841 1.0000 80 chr1:233846011-233846091 1.0000 80 chr12:54731211-54731291 1.0000 80 chr22:22929844-22929924 1.0000 80 chr9:102796304-102796384 1.0000 80 chr2:152672487-152672567 1.0000 80 chr6:6885928-6886008 1.0000 80 chr22:22378288-22378368 1.0000 80 chr5:81763114-81763194 1.0000 80 chr1:11793567-11793647 1.0000 80 chr19:50867141-50867221 1.0000 80 chr1:196515536-196515616 1.0000 80 chr6:167514008-167514088 1.0000 80 chr15:58623689-58623769 1.0000 80 chr1:181012343-181012423 1.0000 80 chr3:185191304-185191384 1.0000 80 chr1:155870178-155870258 1.0000 80 chr6:161394605-161394685 1.0000 80 chr20:1236431-1236511 1.0000 80 chr6:27509620-27509700 1.0000 80 chr21:36368756-36368836 1.0000 80 chr11:38616593-38616673 1.0000 80 chr20:1182830-1182910 1.0000 80 chr8:80672396-80672476 1.0000 80 chr8:125968446-125968526 1.0000 80 chr10:77189902-77189982 1.0000 80 chr1:12468769-12468849 1.0000 80 chr17:53809039-53809119 1.0000 80 chr7:137999134-137999214 1.0000 80 chr7:134845823-134845903 1.0000 80 chr5:141776914-141776994 1.0000 80 chr10:50705562-50705642 1.0000 80 chr6:34688108-34688188 1.0000 80 chr1:154130063-154130143 1.0000 80 chr5:76152859-76152939 1.0000 80 chr11:69957990-69958070 1.0000 80 chr17:75084085-75084165 1.0000 80 chr20:32047556-32047636 1.0000 80 chr7:29834689-29834769 1.0000 80 chr17:46949094-46949174 1.0000 80 chrX:41301732-41301812 1.0000 80 chr2:158794673-158794753 1.0000 80 chr7:116612031-116612111 1.0000 80 chr3:186715079-186715159 1.0000 80 chr3:101350909-101350989 1.0000 80 chr7:106437285-106437365 1.0000 80 chr3:14314406-14314486 1.0000 80 chr1:68166536-68166616 1.0000 80 chrX:129936071-129936151 1.0000 80 chr10:33345925-33346005 1.0000 80 chr19:49385483-49385563 1.0000 80 chr6:43894949-43895029 1.0000 80 chr6:147092221-147092301 1.0000 80 chr22:22929639-22929719 1.0000 80 chr7:150019276-150019356 1.0000 80 chr3:142941572-142941652 1.0000 80 chr20:1168511-1168591 1.0000 80 chr14:35817144-35817224 1.0000 80 chr7:132704542-132704622 1.0000 80 chr5:95043650-95043730 1.0000 80 chr11:3530993-3531073 1.0000 80 chr2:25599959-25600039 1.0000 80 chr22:21357314-21357394 1.0000 80 chr1:25696694-25696774 1.0000 80 chr18:57579004-57579084 1.0000 80 chr9:127612284-127612364 1.0000 80 chr2:8947406-8947486 1.0000 80 chr9:127612484-127612564 1.0000 80 chr10:74648032-74648112 1.0000 80 chr14:32490208-32490288 1.0000 80 chr6:130355639-130355719 1.0000 80 chr11:110300702-11030078 1.0000 80 chr11:63298797-63298877 1.0000 80 chr8:98811076-98811156 1.0000 80 chr14:102144454-10214453 1.0000 80 chr6:137440870-137440950 1.0000 80 chr5:55452821-55452901 1.0000 80 chr3:37333055-37333135 1.0000 80 chr6:135706606-135706686 1.0000 80 chr5:95043440-95043520 1.0000 80 chr7:30767701-30767781 1.0000 80 chr8:26241642-26241722 1.0000 80 chr17:41430095-41430175 1.0000 80 chr13:31151661-31151741 1.0000 80 chr8:59573573-59573653 1.0000 80 chr11:9341117-9341197 1.0000 80 chr5:125850178-125850258 1.0000 80 chr21:44818106-44818186 1.0000 80 chr15:29965585-29965665 1.0000 80 chr4:32003800-32003880 1.0000 80 chr1:149362407-149362487 1.0000 80 chr11:34852320-34852400 1.0000 80 chr6:37150745-37150825 1.0000 80 chr2:47306225-47306305 1.0000 80 chr13:30082849-30082929 1.0000 80 chr20:45828638-45828718 1.0000 80 chr13:30083050-30083130 1.0000 80 chr6:21264060-21264140 1.0000 80 chr21:44596884-44596964 1.0000 80 chr7:137908434-137908514 1.0000 80 chr11:18713158-18713238 1.0000 80 chr9:100361132-100361212 1.0000 80 chr1:160919237-160919317 1.0000 80 chr22:23878225-23878305 1.0000 80 chr7:138040174-138040254 1.0000 80 chr1:1545368-1545448 1.0000 80 chr22:39168029-39168109 1.0000 80 chr9:99994466-99994546 1.0000 80 chr9:80507996-80508076 1.0000 80 chr1:12609390-12609470 1.0000 80 chr3:46530412-46530492 1.0000 80 chr1:1358106-1358186 1.0000 80 chr12:110488108-11048818 1.0000 80 chr1:162465790-162465870 1.0000 80 chr3:44479438-44479518 1.0000 80 chr4:154415018-154415098 1.0000 80 chr2:169521326-169521406 1.0000 80 chr5:173359734-173359814 1.0000 80 chr3:14293089-14293169 1.0000 80 chrX:15901558-15901638 1.0000 80 chr3:5124188-5124268 1.0000 80 chr8:42616371-42616451 1.0000 80 chr9:128235637-128235717 1.0000 80 chr6:42435735-42435815 1.0000 80 chrX:46907578-46907658 1.0000 80 chr4:111170494-111170574 1.0000 80 chr5:162930242-162930322 1.0000 80 chr21:40731492-40731572 1.0000 80 chr15:34948406-34948486 1.0000 80 chr2:69787052-69787132 1.0000 80 chr14:76400231-76400311 1.0000 80 chr11:65186204-65186284 1.0000 80 chr17:16189591-16189671 1.0000 80 chr6:158176292-158176372 1.0000 80 chr20:49125545-49125625 1.0000 80 chr8:42124065-42124145 1.0000 80 chr16:56323935-56324015 1.0000 80 chr21:44391189-44391269 1.0000 80 chr5:102393010-102393090 1.0000 80 chr2:120096506-120096586 1.0000 80 chr2:62532945-62533025 1.0000 80 chr15:45876382-45876462 1.0000 80 chr8:23366958-23367038 1.0000 80 chr1:62332782-62332862 1.0000 80 chr20:47904404-47904484 1.0000 80 chr1:62332986-62333066 1.0000 80 chr1:200855875-200855955 1.0000 80 chr6:27500111-27500191 1.0000 80 chr1:241860212-241860292 1.0000 80 chr4:138384939-138385019 1.0000 80 chr22:39504646-39504726 1.0000 80 chr22:23875778-23875858 1.0000 80 chr1:161527712-161527792 1.0000 80 chr6:101168340-101168420 1.0000 80 chr6:151409151-151409231 1.0000 80 chr21:37700039-37700119 1.0000 80 chr10:104214999-10421507 1.0000 80 chr17:47154419-47154499 1.0000 80 chr1:9138454-9138534 1.0000 80 chr7:75428255-75428335 1.0000 80 chr21:44391389-44391469 1.0000 80 chr21:36368955-36369035 1.0000 80 chr15:57075562-57075642 1.0000 80 chr6:36852530-36852610 1.0000 80 chr2:12223989-12224069 1.0000 80 chr14:103017338-10301741 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_ID3/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/ID3.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.263 C 0.236 G 0.24 T 0.261 Background letter frequencies (from file dataset with add-one prior applied): A 0.263 C 0.236 G 0.24 T 0.261 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGACCTTT MEME-1 width = 8 sites = 56 llr = 563 E-value = 1.9e-066 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGACCTTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A :19:1::: pos.-specific C ::1a8::: probability G :9:::::: matrix T a::::aaa bits 2.1 * 1.9 * * *** 1.7 **** *** 1.5 **** *** Relative 1.2 ******** Entropy 1.0 ******** (14.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGACCTTT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACCTTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:75428255-75428335 12 1.63e-05 GACCTTATGC TGACCTTT CTTTATCTGG chr20:47904404-47904484 70 1.63e-05 TTCCTTCTGC TGACCTTT ACA chr2:62532945-62533025 7 1.63e-05 ACAGCA TGACCTTT ACTTAATAAA chr9:128235637-128235717 15 1.63e-05 CCATCCGTCA TGACCTTT TCATGCTCCC chr5:173359734-173359814 56 1.63e-05 TTCTGTAGAG TGACCTTT GAAATGTCAA chr3:46530412-46530492 47 1.63e-05 ggtgtggcga tgaccttt tctgcagccc chr9:100361132-100361212 44 1.63e-05 CAGACTTCTT TGACCTTT CTCTTGTGGC chr2:8947406-8947486 62 1.63e-05 ATGTCCACAG TGACCTTT CAGTACATGG chr9:127612284-127612364 4 1.63e-05 aga tgaccttt aaccagcata chr1:25696694-25696774 63 1.63e-05 AGGGAAATGG TGACCTTT ACCACCTCCC chrX:129936071-129936151 38 1.63e-05 TTATCAAGTC TGACCTTT GGATAATGAC chr1:68166536-68166616 71 1.63e-05 CACCATCTAA TGACCTTT CC chrX:41301732-41301812 2 1.63e-05 G TGACCTTT ATGGGAAAAA chr17:46949094-46949174 29 1.63e-05 GTGTGGAGAG TGACCTTT GGACCTGGGT chr7:137999134-137999214 24 1.63e-05 ctggtaaatt tgaccttt agttactgaa chr1:12468769-12468849 35 1.63e-05 CCAAGTCCAG TGACCTTT CTCTCTAGCC chr8:125968446-125968526 45 1.63e-05 ATCCGTTCAT TGACCTTT GTCACTCAAG chr11:38616593-38616673 34 1.63e-05 agagagtcgc tgaccttt cccacaaggg chr21:36368756-36368836 8 1.63e-05 ATGCGTC TGACCTTT TGTGTCTCTT chr6:161394605-161394685 35 1.63e-05 cttggggtag tgaccttt cccttggtaa chr15:58623689-58623769 22 1.63e-05 gagcaagagt tgaccttt attatcttaa chr1:43867933-43868013 38 1.63e-05 TCAGAccaat tgaccttt atttcctcag chr6:27499910-27499990 12 1.63e-05 GCAGAAAATT TGACCTTT CCAAGGGAGC chr20:44611978-44612058 10 1.63e-05 aagtccatg tgaccttt ttagtctctt chr3:179438125-179438205 29 1.63e-05 TGTAGGGAGA TGACCTTT AAAATTATCT chr7:95401680-95401760 35 1.63e-05 ATAGACGAAT TGACCTTT CCAGGTCCTC chr6:2999525-2999605 17 1.63e-05 CATCCGTGCG TGACCTTT GCGAGGGCAT chr1:45103917-45103997 53 1.63e-05 AAAATGGCGG TGACCTTT TCAGGAGGAA chr10:33355965-33356045 24 1.63e-05 CAAGTCCGGT TGACCTTT TAGAAAAACA chr8:103820809-103820889 5 1.63e-05 CAGC TGACCTTT GAAGCTAGTG chr2:178031145-178031225 65 1.63e-05 TTACTGGCCT TGACCTTT AGATGGAC chr7:73172954-73173034 69 1.63e-05 TCAGCATGGG TGACCTTT CGGG chr1:9299807-9299887 17 1.63e-05 CAGCAGACAT TGACCTTT ACCTCCCGCT chr8:99415193-99415273 12 1.63e-05 GGGGAGGGCC TGACCTTT CCTTTGTTGA chr4:26175800-26175880 54 1.63e-05 actagtgaga tgaccttt acctaagtct chr6:44942352-44942432 14 1.63e-05 ccggacaaag tgaccttt taaaaatgca chr10:81961444-81961524 26 1.63e-05 AAAATAGCCG TGACCTTT TTAGTGGACA chr6:136926170-136926250 46 1.63e-05 AGAATCTTCT TGACCTTT AATGTGTTCT chr10:73978289-73978369 23 1.63e-05 ttgggttaga tgaccttt aaggAATCTG chr18:21656285-21656365 33 1.63e-05 GATTCATACT TGACCTTT CAGAGCAGCC chr1:208076566-208076646 59 1.63e-05 CATCAAACAC TGACCTTT CTTTATCTGA chr6:130355639-130355719 33 3.45e-05 tcattgcatt tgacattt cagtctttaa chr1:196515536-196515616 40 3.45e-05 GCCAGCAATT TGACATTT ATATTATCAA chr4:48257577-48257657 72 3.45e-05 aggtcagctt tgacattt a chr21:46816024-46816104 59 3.45e-05 cacgcaaccg tgacattt gtgaggctca chr16:14093924-14094004 67 3.45e-05 GCTCTAAGCC TGACATTT CAGGAT chr1:173362415-173362495 34 3.45e-05 GAGTCATTCG TGACATTT TCTCACCCTC chr7:142506628-142506708 16 3.45e-05 GGATGTGGTT TGACATTT ACTGGGTCCT chr10:50705562-50705642 15 4.91e-05 ATTATCAAGA TGCCCTTT AATTTCTGCC chr12:54731211-54731291 61 4.91e-05 TTTATAAACT TGCCCTTT GCAAAAACTT chr19:45748761-45748841 12 4.91e-05 ATTATCTGTC TGCCCTTT TAGGCCAGGC chr8:26241642-26241722 41 6.70e-05 GGTTCTTGCC TAACCTTT CTTTAATTCA chr12:96577625-96577705 40 6.70e-05 gagttgcagA TAACCTTT TCAATCCACT chr5:40735903-40735983 58 6.70e-05 aggtcactga taaccttt acaaaagcag chr7:132704542-132704622 53 8.51e-05 TGTCAAAGAC TGACTTTT GGAGGTAGGG chr6:99873924-99874004 4 8.51e-05 CCG TGACTTTT AGGGAACCGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACCTTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:75428255-75428335 1.6e-05 11_[+1]_61 chr20:47904404-47904484 1.6e-05 69_[+1]_3 chr2:62532945-62533025 1.6e-05 6_[+1]_66 chr9:128235637-128235717 1.6e-05 14_[+1]_58 chr5:173359734-173359814 1.6e-05 55_[+1]_17 chr3:46530412-46530492 1.6e-05 46_[+1]_26 chr9:100361132-100361212 1.6e-05 43_[+1]_29 chr2:8947406-8947486 1.6e-05 61_[+1]_11 chr9:127612284-127612364 1.6e-05 3_[+1]_69 chr1:25696694-25696774 1.6e-05 62_[+1]_10 chrX:129936071-129936151 1.6e-05 37_[+1]_35 chr1:68166536-68166616 1.6e-05 70_[+1]_2 chrX:41301732-41301812 1.6e-05 1_[+1]_71 chr17:46949094-46949174 1.6e-05 28_[+1]_44 chr7:137999134-137999214 1.6e-05 23_[+1]_49 chr1:12468769-12468849 1.6e-05 34_[+1]_38 chr8:125968446-125968526 1.6e-05 44_[+1]_28 chr11:38616593-38616673 1.6e-05 33_[+1]_39 chr21:36368756-36368836 1.6e-05 7_[+1]_65 chr6:161394605-161394685 1.6e-05 34_[+1]_38 chr15:58623689-58623769 1.6e-05 21_[+1]_51 chr1:43867933-43868013 1.6e-05 37_[+1]_35 chr6:27499910-27499990 1.6e-05 11_[+1]_61 chr20:44611978-44612058 1.6e-05 9_[+1]_63 chr3:179438125-179438205 1.6e-05 28_[+1]_44 chr7:95401680-95401760 1.6e-05 34_[+1]_38 chr6:2999525-2999605 1.6e-05 16_[+1]_56 chr1:45103917-45103997 1.6e-05 52_[+1]_20 chr10:33355965-33356045 1.6e-05 23_[+1]_49 chr8:103820809-103820889 1.6e-05 4_[+1]_68 chr2:178031145-178031225 1.6e-05 64_[+1]_8 chr7:73172954-73173034 1.6e-05 68_[+1]_4 chr1:9299807-9299887 1.6e-05 16_[+1]_56 chr8:99415193-99415273 1.6e-05 11_[+1]_61 chr4:26175800-26175880 1.6e-05 53_[+1]_19 chr6:44942352-44942432 1.6e-05 13_[+1]_59 chr10:81961444-81961524 1.6e-05 25_[+1]_47 chr6:136926170-136926250 1.6e-05 45_[+1]_27 chr10:73978289-73978369 1.6e-05 22_[+1]_50 chr18:21656285-21656365 1.6e-05 32_[+1]_40 chr1:208076566-208076646 1.6e-05 58_[+1]_14 chr6:130355639-130355719 3.4e-05 32_[+1]_40 chr1:196515536-196515616 3.4e-05 39_[+1]_33 chr4:48257577-48257657 3.4e-05 71_[+1]_1 chr21:46816024-46816104 3.4e-05 58_[+1]_14 chr16:14093924-14094004 3.4e-05 66_[+1]_6 chr1:173362415-173362495 3.4e-05 33_[+1]_39 chr7:142506628-142506708 3.4e-05 15_[+1]_57 chr10:50705562-50705642 4.9e-05 14_[+1]_58 chr12:54731211-54731291 4.9e-05 60_[+1]_12 chr19:45748761-45748841 4.9e-05 11_[+1]_61 chr8:26241642-26241722 6.7e-05 40_[+1]_32 chr12:96577625-96577705 6.7e-05 39_[+1]_33 chr5:40735903-40735983 6.7e-05 57_[+1]_15 chr7:132704542-132704622 8.5e-05 52_[+1]_20 chr6:99873924-99874004 8.5e-05 3_[+1]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACCTTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGACCTTT width=8 seqs=56 chr7:75428255-75428335 ( 12) TGACCTTT 1 chr20:47904404-47904484 ( 70) TGACCTTT 1 chr2:62532945-62533025 ( 7) TGACCTTT 1 chr9:128235637-128235717 ( 15) TGACCTTT 1 chr5:173359734-173359814 ( 56) TGACCTTT 1 chr3:46530412-46530492 ( 47) TGACCTTT 1 chr9:100361132-100361212 ( 44) TGACCTTT 1 chr2:8947406-8947486 ( 62) TGACCTTT 1 chr9:127612284-127612364 ( 4) TGACCTTT 1 chr1:25696694-25696774 ( 63) TGACCTTT 1 chrX:129936071-129936151 ( 38) TGACCTTT 1 chr1:68166536-68166616 ( 71) TGACCTTT 1 chrX:41301732-41301812 ( 2) TGACCTTT 1 chr17:46949094-46949174 ( 29) TGACCTTT 1 chr7:137999134-137999214 ( 24) TGACCTTT 1 chr1:12468769-12468849 ( 35) TGACCTTT 1 chr8:125968446-125968526 ( 45) TGACCTTT 1 chr11:38616593-38616673 ( 34) TGACCTTT 1 chr21:36368756-36368836 ( 8) TGACCTTT 1 chr6:161394605-161394685 ( 35) TGACCTTT 1 chr15:58623689-58623769 ( 22) TGACCTTT 1 chr1:43867933-43868013 ( 38) TGACCTTT 1 chr6:27499910-27499990 ( 12) TGACCTTT 1 chr20:44611978-44612058 ( 10) TGACCTTT 1 chr3:179438125-179438205 ( 29) TGACCTTT 1 chr7:95401680-95401760 ( 35) TGACCTTT 1 chr6:2999525-2999605 ( 17) TGACCTTT 1 chr1:45103917-45103997 ( 53) TGACCTTT 1 chr10:33355965-33356045 ( 24) TGACCTTT 1 chr8:103820809-103820889 ( 5) TGACCTTT 1 chr2:178031145-178031225 ( 65) TGACCTTT 1 chr7:73172954-73173034 ( 69) TGACCTTT 1 chr1:9299807-9299887 ( 17) TGACCTTT 1 chr8:99415193-99415273 ( 12) TGACCTTT 1 chr4:26175800-26175880 ( 54) TGACCTTT 1 chr6:44942352-44942432 ( 14) TGACCTTT 1 chr10:81961444-81961524 ( 26) TGACCTTT 1 chr6:136926170-136926250 ( 46) TGACCTTT 1 chr10:73978289-73978369 ( 23) TGACCTTT 1 chr18:21656285-21656365 ( 33) TGACCTTT 1 chr1:208076566-208076646 ( 59) TGACCTTT 1 chr6:130355639-130355719 ( 33) TGACATTT 1 chr1:196515536-196515616 ( 40) TGACATTT 1 chr4:48257577-48257657 ( 72) TGACATTT 1 chr21:46816024-46816104 ( 59) TGACATTT 1 chr16:14093924-14094004 ( 67) TGACATTT 1 chr1:173362415-173362495 ( 34) TGACATTT 1 chr7:142506628-142506708 ( 16) TGACATTT 1 chr10:50705562-50705642 ( 15) TGCCCTTT 1 chr12:54731211-54731291 ( 61) TGCCCTTT 1 chr19:45748761-45748841 ( 12) TGCCCTTT 1 chr8:26241642-26241722 ( 41) TAACCTTT 1 chr12:96577625-96577705 ( 40) TAACCTTT 1 chr5:40735903-40735983 ( 58) TAACCTTT 1 chr7:132704542-132704622 ( 53) TGACTTTT 1 chr6:99873924-99874004 ( 4) TGACTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACCTTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.95106 E= 1.9e-066 -1245 -1245 -1245 194 -229 -1245 198 -1245 185 -214 -1245 -1245 -1245 208 -1245 -1245 -107 183 -1245 -287 -1245 -1245 -1245 194 -1245 -1245 -1245 194 -1245 -1245 -1245 194 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACCTTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 56 E= 1.9e-066 0.000000 0.000000 0.000000 1.000000 0.053571 0.000000 0.946429 0.000000 0.946429 0.053571 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.125000 0.839286 0.000000 0.035714 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACCTTT MEME-1 regular expression -------------------------------------------------------------------------------- TGACCTTT -------------------------------------------------------------------------------- Time 5.00 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAGGTCA MEME-2 width = 8 sites = 54 llr = 515 E-value = 1.6e-050 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAGGTCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A aaa::::a pos.-specific C :::::19: probability G :::8a::: matrix T :::2:9:: bits 2.1 * 1.9 * * * 1.7 *** **** 1.5 *** **** Relative 1.2 ******** Entropy 1.0 ******** (13.7 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAGGTCA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGGTCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr8:23366958-23367038 37 1.70e-05 TACTTTTTTC AAAGGTCA TCTTTTGGCT chr5:162930242-162930322 23 1.70e-05 TGCTAATTTA AAAGGTCA AGTGAAGCTG chr4:154415018-154415098 33 1.70e-05 ATGAAGTTGA AAAGGTCA TTTTCTTAGT chr2:47306225-47306305 52 1.70e-05 taccaagaac aaaggtca tccctgtatc chr1:149362407-149362487 56 1.70e-05 gaggacgatc aaaggtca ctttcatcac chr4:32003800-32003880 62 1.70e-05 AAGTCTCCCC AAAGGTCA GATCTGATCA chr6:135706606-135706686 46 1.70e-05 ttagcaatga aaaggtca cttttgagct chr14:102144454-10214453 12 1.70e-05 AGGACACTAT AAAGGTCA GCAAATTGGC chr18:57579004-57579084 9 1.70e-05 GTTTTCCT AAAGGTCA CTAGTGCTCT chr2:25599959-25600039 51 1.70e-05 GTTGGTTTTT AAAGGTCA AAGATAAGGA chr7:132704542-132704622 6 1.70e-05 ATGCC AAAGGTCA GAGGTCAGAA chr3:142941572-142941652 16 1.70e-05 tgagaccttt aaaggtca tgcttttaga chr3:186715079-186715159 36 1.70e-05 atgacatgct aaaggtca tctagttagt chr2:158794673-158794753 41 1.70e-05 AGAGAGTTCC AAAGGTCA CAGACTGAAA chr5:141776914-141776994 55 1.70e-05 GAAGTACCAC AAAGGTCA TTGATGATGA chr6:27509620-27509700 73 1.70e-05 GCTCTCTTGG AAAGGTCA chr1:181012343-181012423 20 1.70e-05 GGGGGAAGTA AAAGGTCA AAGCAATACA chr4:37649920-37650000 47 1.70e-05 TCTCAGCCTC AAAGGTCA GTGGGGGTGG chr11:63286213-63286293 35 1.70e-05 tttattatta aaaggtca aaaacagcag chr10:76870027-76870107 58 1.70e-05 AGAAACTGAG AAAGGTCA ACCTGTCCTT chr14:38065452-38065532 6 1.70e-05 TAGGA AAAGGTCA GGGGGAGGGG chr4:48257577-48257657 60 1.70e-05 aactggtttt aaaggtca gctttgacat chr1:202791308-202791388 52 1.70e-05 tttgagcccg aaaggtca aggctgctgt chr15:102164321-10216440 12 1.70e-05 tctgaagaga aaaggtca ggtgcaagtc chr16:88489966-88490046 10 1.70e-05 ttagtttcc aaaggtca ggatgcaggc chr2:104123441-104123521 29 1.70e-05 ttcctcactc aaaggtca tcttgaattg chr15:81281548-81281628 3 1.70e-05 GG AAAGGTCA CTCTCCCTGT chr3:196242212-196242292 7 1.70e-05 TGCCTG AAAGGTCA CTCAGTACAA chr15:91459236-91459316 58 1.70e-05 TTCTCCTTTG AAAGGTCA GTGCCTGCTT chr5:137335948-137336028 66 1.70e-05 cttgagcctg aaaggtca aggctgt chr9:115911631-115911711 27 1.70e-05 AAGTAAGTGT AAAGGTCA TCAGATTGTG chr20:5103695-5103775 51 1.70e-05 gcatgattat aaaggtca gcatacttgg chr6:139697928-139698008 7 1.70e-05 CCCTGG AAAGGTCA CCTGCCCATC chr2:12223989-12224069 3 3.54e-05 CA AAAtgtca gaggcctttg chr5:173359734-173359814 65 3.54e-05 GTGACCTTTG AAATGTCA ACATAAAA chr12:110488108-11048818 38 3.54e-05 TGTGCAATAC AAAtgtca gaggcgtgtg chr11:69957990-69958070 1 3.54e-05 . AAATGTCA ACTGTACACA chr20:1236431-1236511 10 3.54e-05 tctttttga aaatgtca cacagatgga chr19:50867141-50867221 36 3.54e-05 GTCTCAGTTT AAATGTCA CATATCTGGG chr1:11793567-11793647 65 3.54e-05 tcagttTAGT AAATGTCA GCTCTAAT chr1:233846011-233846091 35 3.54e-05 TATGAGTGAC AAATGTCA AAAGAAGTTG chr2:100453813-100453893 16 3.54e-05 CAGAAAAGGT AAATGTCA AACCACAGAC chr6:37150745-37150825 42 5.08e-05 atttcatgtc aaaggcca catattaggt chr8:125968446-125968526 67 5.08e-05 CTCAAGACTG AAAGGCCA CTTGCT chr7:142506861-142506941 66 5.08e-05 GCACAAGATC AAAGGCCA CAGTGGG chr20:49125545-49125625 20 6.96e-05 tgattttgtg aaaggtta tcagtctgat chr18:68045597-68045677 66 6.96e-05 AGCTGAATGT AAAGGTTA ATGGCAC chr21:37700039-37700119 10 1.31e-04 gatttcgct gaaggtca gataacaact chr6:151409151-151409231 6 1.31e-04 CGGCC AGAGGTCA ACTCCCAACG chrX:15901558-15901638 72 1.31e-04 ATTTTGAATT AAAGGTCC T chr5:76152859-76152939 41 1.31e-04 aggcagaaca caaggtca ggagttcaag chr16:56323935-56324015 53 1.82e-04 ctgactcttt aaatgcca cgacctcctg chr7:134845823-134845903 45 1.82e-04 CTGAATATAA AAAGGTGA GAGGCCACCA chr8:80672396-80672476 33 1.82e-04 gagattacag ataggtca gcagaccgtt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGGTCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:23366958-23367038 1.7e-05 36_[+2]_36 chr5:162930242-162930322 1.7e-05 22_[+2]_50 chr4:154415018-154415098 1.7e-05 32_[+2]_40 chr2:47306225-47306305 1.7e-05 51_[+2]_21 chr1:149362407-149362487 1.7e-05 55_[+2]_17 chr4:32003800-32003880 1.7e-05 61_[+2]_11 chr6:135706606-135706686 1.7e-05 45_[+2]_27 chr14:102144454-10214453 1.7e-05 11_[+2]_61 chr18:57579004-57579084 1.7e-05 8_[+2]_64 chr2:25599959-25600039 1.7e-05 50_[+2]_22 chr7:132704542-132704622 1.7e-05 5_[+2]_67 chr3:142941572-142941652 1.7e-05 15_[+2]_57 chr3:186715079-186715159 1.7e-05 35_[+2]_37 chr2:158794673-158794753 1.7e-05 40_[+2]_32 chr5:141776914-141776994 1.7e-05 54_[+2]_18 chr6:27509620-27509700 1.7e-05 72_[+2] chr1:181012343-181012423 1.7e-05 19_[+2]_53 chr4:37649920-37650000 1.7e-05 46_[+2]_26 chr11:63286213-63286293 1.7e-05 34_[+2]_38 chr10:76870027-76870107 1.7e-05 57_[+2]_15 chr14:38065452-38065532 1.7e-05 5_[+2]_67 chr4:48257577-48257657 1.7e-05 59_[+2]_13 chr1:202791308-202791388 1.7e-05 51_[+2]_21 chr15:102164321-10216440 1.7e-05 11_[+2]_61 chr16:88489966-88490046 1.7e-05 9_[+2]_63 chr2:104123441-104123521 1.7e-05 28_[+2]_44 chr15:81281548-81281628 1.7e-05 2_[+2]_70 chr3:196242212-196242292 1.7e-05 6_[+2]_66 chr15:91459236-91459316 1.7e-05 57_[+2]_15 chr5:137335948-137336028 1.7e-05 65_[+2]_7 chr9:115911631-115911711 1.7e-05 26_[+2]_46 chr20:5103695-5103775 1.7e-05 50_[+2]_22 chr6:139697928-139698008 1.7e-05 6_[+2]_66 chr2:12223989-12224069 3.5e-05 2_[+2]_70 chr5:173359734-173359814 3.5e-05 64_[+2]_8 chr12:110488108-11048818 3.5e-05 37_[+2]_35 chr11:69957990-69958070 3.5e-05 [+2]_72 chr20:1236431-1236511 3.5e-05 9_[+2]_63 chr19:50867141-50867221 3.5e-05 35_[+2]_37 chr1:11793567-11793647 3.5e-05 64_[+2]_8 chr1:233846011-233846091 3.5e-05 34_[+2]_38 chr2:100453813-100453893 3.5e-05 15_[+2]_57 chr6:37150745-37150825 5.1e-05 41_[+2]_31 chr8:125968446-125968526 5.1e-05 66_[+2]_6 chr7:142506861-142506941 5.1e-05 65_[+2]_7 chr20:49125545-49125625 7e-05 19_[+2]_53 chr18:68045597-68045677 7e-05 65_[+2]_7 chr21:37700039-37700119 0.00013 9_[+2]_63 chr6:151409151-151409231 0.00013 5_[+2]_67 chrX:15901558-15901638 0.00013 71_[+2]_1 chr5:76152859-76152939 0.00013 40_[+2]_32 chr16:56323935-56324015 0.00018 52_[+2]_20 chr7:134845823-134845903 0.00018 44_[+2]_28 chr8:80672396-80672476 0.00018 32_[+2]_40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGGTCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAGGTCA width=8 seqs=54 chr8:23366958-23367038 ( 37) AAAGGTCA 1 chr5:162930242-162930322 ( 23) AAAGGTCA 1 chr4:154415018-154415098 ( 33) AAAGGTCA 1 chr2:47306225-47306305 ( 52) AAAGGTCA 1 chr1:149362407-149362487 ( 56) AAAGGTCA 1 chr4:32003800-32003880 ( 62) AAAGGTCA 1 chr6:135706606-135706686 ( 46) AAAGGTCA 1 chr14:102144454-10214453 ( 12) AAAGGTCA 1 chr18:57579004-57579084 ( 9) AAAGGTCA 1 chr2:25599959-25600039 ( 51) AAAGGTCA 1 chr7:132704542-132704622 ( 6) AAAGGTCA 1 chr3:142941572-142941652 ( 16) AAAGGTCA 1 chr3:186715079-186715159 ( 36) AAAGGTCA 1 chr2:158794673-158794753 ( 41) AAAGGTCA 1 chr5:141776914-141776994 ( 55) AAAGGTCA 1 chr6:27509620-27509700 ( 73) AAAGGTCA 1 chr1:181012343-181012423 ( 20) AAAGGTCA 1 chr4:37649920-37650000 ( 47) AAAGGTCA 1 chr11:63286213-63286293 ( 35) AAAGGTCA 1 chr10:76870027-76870107 ( 58) AAAGGTCA 1 chr14:38065452-38065532 ( 6) AAAGGTCA 1 chr4:48257577-48257657 ( 60) AAAGGTCA 1 chr1:202791308-202791388 ( 52) AAAGGTCA 1 chr15:102164321-10216440 ( 12) AAAGGTCA 1 chr16:88489966-88490046 ( 10) AAAGGTCA 1 chr2:104123441-104123521 ( 29) AAAGGTCA 1 chr15:81281548-81281628 ( 3) AAAGGTCA 1 chr3:196242212-196242292 ( 7) AAAGGTCA 1 chr15:91459236-91459316 ( 58) AAAGGTCA 1 chr5:137335948-137336028 ( 66) AAAGGTCA 1 chr9:115911631-115911711 ( 27) AAAGGTCA 1 chr20:5103695-5103775 ( 51) AAAGGTCA 1 chr6:139697928-139698008 ( 7) AAAGGTCA 1 chr2:12223989-12224069 ( 3) AAATGTCA 1 chr5:173359734-173359814 ( 65) AAATGTCA 1 chr12:110488108-11048818 ( 38) AAATGTCA 1 chr11:69957990-69958070 ( 1) AAATGTCA 1 chr20:1236431-1236511 ( 10) AAATGTCA 1 chr19:50867141-50867221 ( 36) AAATGTCA 1 chr1:11793567-11793647 ( 65) AAATGTCA 1 chr1:233846011-233846091 ( 35) AAATGTCA 1 chr2:100453813-100453893 ( 16) AAATGTCA 1 chr6:37150745-37150825 ( 42) AAAGGCCA 1 chr8:125968446-125968526 ( 67) AAAGGCCA 1 chr7:142506861-142506941 ( 66) AAAGGCCA 1 chr20:49125545-49125625 ( 20) AAAGGTTA 1 chr18:68045597-68045677 ( 66) AAAGGTTA 1 chr21:37700039-37700119 ( 10) GAAGGTCA 1 chr6:151409151-151409231 ( 6) AGAGGTCA 1 chrX:15901558-15901638 ( 72) AAAGGTCC 1 chr5:76152859-76152939 ( 41) CAAGGTCA 1 chr16:56323935-56324015 ( 53) AAATGCCA 1 chr7:134845823-134845903 ( 45) AAAGGTGA 1 chr8:80672396-80672476 ( 33) ATAGGTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGGTCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.96686 E= 1.6e-050 187 -367 -369 -1240 187 -1240 -369 -381 193 -1240 -1240 -1240 -1240 -1240 176 -50 -1240 -1240 206 -1240 -1240 -167 -1240 183 -1240 200 -369 -282 190 -367 -1240 -1240 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGGTCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 54 E= 1.6e-050 0.962963 0.018519 0.018519 0.000000 0.962963 0.000000 0.018519 0.018519 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.814815 0.185185 0.000000 0.000000 1.000000 0.000000 0.000000 0.074074 0.000000 0.925926 0.000000 0.944444 0.018519 0.037037 0.981481 0.018519 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGGTCA MEME-2 regular expression -------------------------------------------------------------------------------- AAAGGTCA -------------------------------------------------------------------------------- Time 8.74 secs. ******************************************************************************** ******************************************************************************** MOTIF CTCCATCT MEME-3 width = 8 sites = 45 llr = 422 E-value = 3.5e-033 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTCCATCT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :1::9::: pos.-specific C a:9a1:7: probability G ::1::::: matrix T :9:::a2a bits 2.1 * 1.9 * * * * 1.7 ** * * * 1.5 ****** * Relative 1.2 ****** * Entropy 1.0 ******** (13.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTCCATCT consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCATCT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:12223989-12224069 32 1.45e-05 accatagtga ctccatct tgaataggga chr1:161527712-161527792 26 1.45e-05 acataactaa ctccatct tagaaaaaga chr21:44391189-44391269 46 1.45e-05 accaaagcga ctccatct tgaatagcga chr8:42124065-42124145 20 1.45e-05 accagagcaa ctccatct tgaataggag chr14:76400231-76400311 70 1.45e-05 cagccagcac ctccatct tgg chr15:34948406-34948486 15 1.45e-05 accagagcaa ctccatct tgaacagggg chr21:40731492-40731572 53 1.45e-05 accagagcga ctccatct tgagggctgt chr12:110488108-11048818 67 1.45e-05 accagagcaa ctccatct taaata chr1:1358106-1358186 70 1.45e-05 accagagcga ctccatct tga chr9:80507996-80508076 22 1.45e-05 accagagcga ctccatct tgaagtcact chr22:39168029-39168109 20 1.45e-05 accagagcaa ctccatct tgaataggag chr11:18713158-18713238 21 1.45e-05 accagagtga ctccatct tgattatgga chr20:45828638-45828718 49 1.45e-05 gccagacaga ctccatct tggctctttc chr7:150019276-150019356 51 1.45e-05 gccagaatta ctccatct tgaataaggg chr19:49385483-49385563 45 1.45e-05 ACAGGGGCGA CTCCATCt tgaacagggg chr10:33345925-33346005 45 1.45e-05 accagagtga ctccatct tgaatagggc chr3:101350909-101350989 42 1.45e-05 gccagataga ctccatct tggctccttc chr20:1182830-1182910 20 1.45e-05 accagagtaa ctccatct tgaatagggg chr5:1132012-1132092 46 1.45e-05 accagagtga ctccatct tgaacagggg chr12:132109853-13210993 69 1.45e-05 gccagacaga ctccatct tggc chr19:14120049-14120129 50 1.45e-05 accagagcaa ctccatct tgaacaggaa chr7:142411583-142411663 49 1.45e-05 accacagcaa ctccatct taaataggag chr17:16396951-16397031 64 1.45e-05 acataagtaa ctccatct tagaaaaag chr14:103017338-10301741 63 3.05e-05 accagagcaa ctccattt tgaatagggg chr21:37700039-37700119 66 3.05e-05 gcatgggtga ctccattt tgatttt chr20:49125545-49125625 62 3.05e-05 gcatgagtga ctccattt tgatttttag chr9:99994466-99994546 18 3.05e-05 acataagaga ctccattt tgttctgtac chr7:138040174-138040254 48 3.05e-05 ACATGAGTAA CTCCATTT TGAGACATTA chr5:55452821-55452901 69 3.05e-05 acataagaga ctccattt tgtt chr3:14314406-14314486 3 3.05e-05 ga ctccattt tgttctgtac chr19:35411125-35411205 23 3.05e-05 acataagaga ctccattt tgttctgtac chr6:158176292-158176372 63 4.36e-05 GGGAGAAATT CTCCCTCT CAGCCATCTC chr5:102393010-102393090 35 7.29e-05 acgagagcta caccatct tgaatggggg chr1:149362407-149362487 71 7.29e-05 tcactttcat caccatct tg chr1:68166536-68166616 61 7.29e-05 TATGAGTCAC CACCATCT AATGACCTTT chr2:158794673-158794753 19 7.29e-05 CTAAAGTAGT CTGCATCT TATCAGAGAG chr7:142424513-142424593 44 7.29e-05 CCACAACTGC CTGCATCT ACTCCAGAAA chr7:142506628-142506708 32 7.29e-05 TTACTGGGTC CTGCATCT GGGGTGCCTG chr1:154130063-154130143 52 8.91e-05 CTGGGGCGTT CTACATCT CATTCAGGTC chr6:99874125-99874205 35 8.91e-05 TGTTTATTAG CTACATCT TGGGAAGTGC chr17:41430095-41430175 72 1.03e-04 tatctcccca ctcccttt a chr14:35817144-35817224 14 1.03e-04 tttttagact ctcccttt cctttaatca chr6:42435527-42435607 67 1.03e-04 tagcatctgg ctcccttt taacca chr9:102796304-102796384 27 1.18e-04 accagagtga ctccatgt tgcatagggg chr7:137908434-137908514 33 1.67e-04 caatggaaaa ttccatct cctgacacgt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCATCT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:12223989-12224069 1.5e-05 31_[+3]_41 chr1:161527712-161527792 1.5e-05 25_[+3]_47 chr21:44391189-44391269 1.5e-05 45_[+3]_27 chr8:42124065-42124145 1.5e-05 19_[+3]_53 chr14:76400231-76400311 1.5e-05 69_[+3]_3 chr15:34948406-34948486 1.5e-05 14_[+3]_58 chr21:40731492-40731572 1.5e-05 52_[+3]_20 chr12:110488108-11048818 1.5e-05 66_[+3]_6 chr1:1358106-1358186 1.5e-05 69_[+3]_3 chr9:80507996-80508076 1.5e-05 21_[+3]_51 chr22:39168029-39168109 1.5e-05 19_[+3]_53 chr11:18713158-18713238 1.5e-05 20_[+3]_52 chr20:45828638-45828718 1.5e-05 48_[+3]_24 chr7:150019276-150019356 1.5e-05 50_[+3]_22 chr19:49385483-49385563 1.5e-05 44_[+3]_28 chr10:33345925-33346005 1.5e-05 44_[+3]_28 chr3:101350909-101350989 1.5e-05 41_[+3]_31 chr20:1182830-1182910 1.5e-05 19_[+3]_53 chr5:1132012-1132092 1.5e-05 45_[+3]_27 chr12:132109853-13210993 1.5e-05 68_[+3]_4 chr19:14120049-14120129 1.5e-05 49_[+3]_23 chr7:142411583-142411663 1.5e-05 48_[+3]_24 chr17:16396951-16397031 1.5e-05 63_[+3]_9 chr14:103017338-10301741 3.1e-05 62_[+3]_10 chr21:37700039-37700119 3.1e-05 65_[+3]_7 chr20:49125545-49125625 3.1e-05 61_[+3]_11 chr9:99994466-99994546 3.1e-05 17_[+3]_55 chr7:138040174-138040254 3.1e-05 47_[+3]_25 chr5:55452821-55452901 3.1e-05 68_[+3]_4 chr3:14314406-14314486 3.1e-05 2_[+3]_70 chr19:35411125-35411205 3.1e-05 22_[+3]_50 chr6:158176292-158176372 4.4e-05 62_[+3]_10 chr5:102393010-102393090 7.3e-05 34_[+3]_38 chr1:149362407-149362487 7.3e-05 70_[+3]_2 chr1:68166536-68166616 7.3e-05 60_[+3]_12 chr2:158794673-158794753 7.3e-05 18_[+3]_54 chr7:142424513-142424593 7.3e-05 43_[+3]_29 chr7:142506628-142506708 7.3e-05 31_[+3]_41 chr1:154130063-154130143 8.9e-05 51_[+3]_21 chr6:99874125-99874205 8.9e-05 34_[+3]_38 chr17:41430095-41430175 0.0001 71_[+3]_1 chr14:35817144-35817224 0.0001 13_[+3]_59 chr6:42435527-42435607 0.0001 66_[+3]_6 chr9:102796304-102796384 0.00012 26_[+3]_46 chr7:137908434-137908514 0.00017 32_[+3]_40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCATCT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTCCATCT width=8 seqs=45 chr2:12223989-12224069 ( 32) CTCCATCT 1 chr1:161527712-161527792 ( 26) CTCCATCT 1 chr21:44391189-44391269 ( 46) CTCCATCT 1 chr8:42124065-42124145 ( 20) CTCCATCT 1 chr14:76400231-76400311 ( 70) CTCCATCT 1 chr15:34948406-34948486 ( 15) CTCCATCT 1 chr21:40731492-40731572 ( 53) CTCCATCT 1 chr12:110488108-11048818 ( 67) CTCCATCT 1 chr1:1358106-1358186 ( 70) CTCCATCT 1 chr9:80507996-80508076 ( 22) CTCCATCT 1 chr22:39168029-39168109 ( 20) CTCCATCT 1 chr11:18713158-18713238 ( 21) CTCCATCT 1 chr20:45828638-45828718 ( 49) CTCCATCT 1 chr7:150019276-150019356 ( 51) CTCCATCT 1 chr19:49385483-49385563 ( 45) CTCCATCT 1 chr10:33345925-33346005 ( 45) CTCCATCT 1 chr3:101350909-101350989 ( 42) CTCCATCT 1 chr20:1182830-1182910 ( 20) CTCCATCT 1 chr5:1132012-1132092 ( 46) CTCCATCT 1 chr12:132109853-13210993 ( 69) CTCCATCT 1 chr19:14120049-14120129 ( 50) CTCCATCT 1 chr7:142411583-142411663 ( 49) CTCCATCT 1 chr17:16396951-16397031 ( 64) CTCCATCT 1 chr14:103017338-10301741 ( 63) CTCCATTT 1 chr21:37700039-37700119 ( 66) CTCCATTT 1 chr20:49125545-49125625 ( 62) CTCCATTT 1 chr9:99994466-99994546 ( 18) CTCCATTT 1 chr7:138040174-138040254 ( 48) CTCCATTT 1 chr5:55452821-55452901 ( 69) CTCCATTT 1 chr3:14314406-14314486 ( 3) CTCCATTT 1 chr19:35411125-35411205 ( 23) CTCCATTT 1 chr6:158176292-158176372 ( 63) CTCCCTCT 1 chr5:102393010-102393090 ( 35) CACCATCT 1 chr1:149362407-149362487 ( 71) CACCATCT 1 chr1:68166536-68166616 ( 61) CACCATCT 1 chr2:158794673-158794753 ( 19) CTGCATCT 1 chr7:142424513-142424593 ( 44) CTGCATCT 1 chr7:142506628-142506708 ( 32) CTGCATCT 1 chr1:154130063-154130143 ( 52) CTACATCT 1 chr6:99874125-99874205 ( 35) CTACATCT 1 chr17:41430095-41430175 ( 72) CTCCCTTT 1 chr14:35817144-35817224 ( 14) CTCCCTTT 1 chr6:42435527-42435607 ( 67) CTCCCTTT 1 chr9:102796304-102796384 ( 27) CTCCATGT 1 chr7:137908434-137908514 ( 33) TTCCATCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCATCT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.70763 E= 3.5e-033 -1214 205 -1214 -355 -198 -1214 -1214 184 -256 191 -185 -1214 -1214 208 -1214 -1214 179 -141 -1214 -1214 -1214 -1214 -1214 194 -1214 163 -343 -10 -1214 -1214 -1214 194 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCATCT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 45 E= 3.5e-033 0.000000 0.977778 0.000000 0.022222 0.066667 0.000000 0.000000 0.933333 0.044444 0.888889 0.066667 0.000000 0.000000 1.000000 0.000000 0.000000 0.911111 0.088889 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.733333 0.022222 0.244444 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCATCT MEME-3 regular expression -------------------------------------------------------------------------------- CTCCAT[CT]T -------------------------------------------------------------------------------- Time 12.36 secs. ******************************************************************************** ******************************************************************************** MOTIF CAARATGG MEME-4 width = 8 sites = 31 llr = 293 E-value = 1.3e-014 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAARATGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A 1aa4a::: pos.-specific C 8::1:::: probability G :::5::aa matrix T 1::::a:: bits 2.1 ** 1.9 ** **** 1.7 ** **** 1.5 ** **** Relative 1.2 *** **** Entropy 1.0 *** **** (13.7 bits) 0.8 *** **** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAAGATGG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAARATGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:9138454-9138534 23 1.55e-05 ggtccctatt caagatgg agtcgctctg chr1:241860212-241860292 13 1.55e-05 agcccctatt caagatgg atttgctctg chr15:45876382-45876462 45 1.55e-05 cagtcctatt caagatgg agttgctctg chr2:120096506-120096586 42 1.55e-05 gatcagtatc caagatgg agttgctttg chr6:158176292-158176372 15 1.55e-05 gctctgtatt caagatgg agttgctctg chrX:15901558-15901638 15 1.55e-05 agcccctatt caagatgg agttgctctg chr3:14293089-14293169 52 1.55e-05 aggttagaag caagatgg agtcaattat chr1:162465790-162465870 24 1.55e-05 agctcctatt caagatgg agttgctctg chr15:29965585-29965665 8 1.55e-05 ccctact caagatgg agtcgctgtg chr5:95043440-95043520 25 1.55e-05 gtgaaagagc caagatgg agtctgtctg chr11:3530993-3531073 12 1.55e-05 gtgaaagagc caagatgg agtctgtctg chr7:106437285-106437365 73 1.55e-05 agcttctatt caagatgg chr2:152672487-152672567 9 1.55e-05 ctagtgtc caagatgg cctctggata chr6:99873924-99874004 65 1.55e-05 CCTTCAACTA CAAGATGG CTTCTCAA chr10:104214999-10421507 18 3.25e-05 tcttacagaa caaaatgg agtctcctat chr22:39504646-39504726 50 3.25e-05 ccaaaccaaa caaaatgg agtcactcgt chr1:200855875-200855955 16 3.25e-05 cagaacaaac caaaatgg tgtcacttat chr3:44479438-44479518 29 3.25e-05 agccctcact caaaatgg agtcgctctg chr11:9341117-9341197 63 3.25e-05 tagtacagaa caaaatgg agtctcttat chr17:41430095-41430175 26 3.25e-05 agccctccct caaaatgg agtcgctttg chr20:32047556-32047636 14 3.25e-05 CTAAACATGT CAAAATGG AGTCACTTAT chr6:34688108-34688188 22 3.25e-05 tagtacagaa caaaatgg agtctcctat chr4:138384939-138385019 4 4.77e-05 aaa caacatgg agtaactcag chr5:76152859-76152939 70 4.77e-05 ccagcccggc caacatgg tga chr5:40735903-40735983 40 4.77e-05 ctggatttga caacatgg aggtcactga chr21:36368955-36369035 51 6.50e-05 AAGTGGAAAA AAAGATGG TTTCACAGAG chr1:1545368-1545448 25 8.39e-05 tcaaaccctg aaaaatgg agccaggagg chr6:21264060-21264140 2 8.39e-05 G AAAAATGG CTGCTCTTGT chr6:45123390-45123470 32 8.39e-05 agttaggaac aaaaatgg agttagtcat chr6:36852530-36852610 27 1.20e-04 caaaccaaac taaaatgg agtcactcat chr1:45103917-45103997 42 1.20e-04 GAAAGGCAGT TAAAATGG CGGTGACCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAARATGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:9138454-9138534 1.5e-05 22_[+4]_50 chr1:241860212-241860292 1.5e-05 12_[+4]_60 chr15:45876382-45876462 1.5e-05 44_[+4]_28 chr2:120096506-120096586 1.5e-05 41_[+4]_31 chr6:158176292-158176372 1.5e-05 14_[+4]_58 chrX:15901558-15901638 1.5e-05 14_[+4]_58 chr3:14293089-14293169 1.5e-05 51_[+4]_21 chr1:162465790-162465870 1.5e-05 23_[+4]_49 chr15:29965585-29965665 1.5e-05 7_[+4]_65 chr5:95043440-95043520 1.5e-05 24_[+4]_48 chr11:3530993-3531073 1.5e-05 11_[+4]_61 chr7:106437285-106437365 1.5e-05 72_[+4] chr2:152672487-152672567 1.5e-05 8_[+4]_64 chr6:99873924-99874004 1.5e-05 64_[+4]_8 chr10:104214999-10421507 3.2e-05 17_[+4]_55 chr22:39504646-39504726 3.2e-05 49_[+4]_23 chr1:200855875-200855955 3.2e-05 15_[+4]_57 chr3:44479438-44479518 3.2e-05 28_[+4]_44 chr11:9341117-9341197 3.2e-05 62_[+4]_10 chr17:41430095-41430175 3.2e-05 25_[+4]_47 chr20:32047556-32047636 3.2e-05 13_[+4]_59 chr6:34688108-34688188 3.2e-05 21_[+4]_51 chr4:138384939-138385019 4.8e-05 3_[+4]_69 chr5:76152859-76152939 4.8e-05 69_[+4]_3 chr5:40735903-40735983 4.8e-05 39_[+4]_33 chr21:36368955-36369035 6.5e-05 50_[+4]_22 chr1:1545368-1545448 8.4e-05 24_[+4]_48 chr6:21264060-21264140 8.4e-05 1_[+4]_71 chr6:45123390-45123470 8.4e-05 31_[+4]_41 chr6:36852530-36852610 0.00012 26_[+4]_46 chr1:45103917-45103997 0.00012 41_[+4]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAARATGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAARATGG width=8 seqs=31 chr1:9138454-9138534 ( 23) CAAGATGG 1 chr1:241860212-241860292 ( 13) CAAGATGG 1 chr15:45876382-45876462 ( 45) CAAGATGG 1 chr2:120096506-120096586 ( 42) CAAGATGG 1 chr6:158176292-158176372 ( 15) CAAGATGG 1 chrX:15901558-15901638 ( 15) CAAGATGG 1 chr3:14293089-14293169 ( 52) CAAGATGG 1 chr1:162465790-162465870 ( 24) CAAGATGG 1 chr15:29965585-29965665 ( 8) CAAGATGG 1 chr5:95043440-95043520 ( 25) CAAGATGG 1 chr11:3530993-3531073 ( 12) CAAGATGG 1 chr7:106437285-106437365 ( 73) CAAGATGG 1 chr2:152672487-152672567 ( 9) CAAGATGG 1 chr6:99873924-99874004 ( 65) CAAGATGG 1 chr10:104214999-10421507 ( 18) CAAAATGG 1 chr22:39504646-39504726 ( 50) CAAAATGG 1 chr1:200855875-200855955 ( 16) CAAAATGG 1 chr3:44479438-44479518 ( 29) CAAAATGG 1 chr11:9341117-9341197 ( 63) CAAAATGG 1 chr17:41430095-41430175 ( 26) CAAAATGG 1 chr20:32047556-32047636 ( 14) CAAAATGG 1 chr6:34688108-34688188 ( 22) CAAAATGG 1 chr4:138384939-138385019 ( 4) CAACATGG 1 chr5:76152859-76152939 ( 70) CAACATGG 1 chr5:40735903-40735983 ( 40) CAACATGG 1 chr21:36368955-36369035 ( 51) AAAGATGG 1 chr1:1545368-1545448 ( 25) AAAAATGG 1 chr6:21264060-21264140 ( 2) AAAAATGG 1 chr6:45123390-45123470 ( 32) AAAAATGG 1 chr6:36852530-36852610 ( 27) TAAAATGG 1 chr1:45103917-45103997 ( 42) TAAAATGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAARATGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.16214 E= 1.3e-014 -102 177 -1160 -202 193 -1160 -1160 -1160 193 -1160 -1160 -1160 67 -129 101 -1160 193 -1160 -1160 -1160 -1160 -1160 -1160 194 -1160 -1160 206 -1160 -1160 -1160 206 -1160 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAARATGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 31 E= 1.3e-014 0.129032 0.806452 0.000000 0.064516 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.419355 0.096774 0.483871 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAARATGG MEME-4 regular expression -------------------------------------------------------------------------------- CAA[GA]ATGG -------------------------------------------------------------------------------- Time 15.90 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGCTGRG MEME-5 width = 8 sites = 43 llr = 355 E-value = 8.6e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGCTGRG MEME-5 Description -------------------------------------------------------------------------------- Simplified A 311:::5: pos.-specific C ::29:::: probability G 7971:a4a matrix T ::::a:1: bits 2.1 * * 1.9 ** * 1.7 *** * 1.5 * *** * Relative 1.2 * *** * Entropy 1.0 ** *** * (11.9 bits) 0.8 ****** * 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGCTGAG consensus A C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCTGRG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr15:57075562-57075642 14 2.47e-05 tcttgagcag gggctggg taaaacgagg chr5:102393010-102393090 50 2.47e-05 tcttgaatgg gggctggg taaaatgaag chr17:16189591-16189671 41 2.47e-05 GCTCTGAGCA GGGCTGGG TCTGGGGGAG chr11:63298797-63298877 69 2.47e-05 cataggcagc gggctgag ttgg chr7:150019276-150019356 66 2.47e-05 tcttgaataa gggctggg taaaatg chr10:33345925-33346005 59 2.47e-05 atcttgaata gggctggg tgaaataagg chr20:1182830-1182910 35 2.47e-05 tcttgaatag gggctggg taaaatgagg chr19:45748761-45748841 37 2.47e-05 GGCTGCGGTT GGGCTGGG AAGGCCGAGG chr5:1132012-1132092 61 2.47e-05 tcttgaacag gggctggg tctgatgagg chr7:142502507-142502587 36 2.47e-05 GAGCTGTGAG GGGCTGAG CAGCTGTAGT chr17:16396951-16397031 8 2.47e-05 aacatca gggctgag ggggattctg chr2:12223989-12224069 62 5.17e-05 gggtaaaata aggctgag acctgctggg chr8:42124065-42124145 50 5.17e-05 gggtaaaatg aggctgag acctactggg chr15:34948406-34948486 45 5.17e-05 gggtaaaata aggctgag acgtactgag chr9:80507996-80508076 50 5.17e-05 gggtaaaatg aggctgag actactgggc chr22:39168029-39168109 52 5.17e-05 gtaaaatacg aggctgag acctactggg chr11:18713158-18713238 51 5.17e-05 gggtaaaata aggctgag acctactggg chr9:102796304-102796384 57 5.17e-05 gggtaaaata aggctgag gcttactgag chr1:202791308-202791388 22 5.17e-05 gctacttggg aggctgag gtgggaggat chr20:5103695-5103775 27 5.17e-05 aaagcattct aggctgag agaatagcat chr20:47904404-47904484 36 7.60e-05 AGCATACTGT GGCCTGAG ACCATGATTG chr2:62532945-62533025 25 7.60e-05 ACTTAATAAA GGCCTGGG GGAAAGCCAG chr5:141776914-141776994 38 7.60e-05 agaaagatAA GGCCTGAG AAGTACCACA chr16:57855451-57855531 71 7.60e-05 GTTTCTTGTA GGCCTGGG GA chr14:38065452-38065532 62 7.60e-05 GGAGAGCAAG GGCCTGGG CGCGGGAACG chr6:138291684-138291764 6 7.60e-05 ACCCA GGCCTGAG GAAGCAATAC chr7:134845823-134845903 26 1.03e-04 AGCCTCATAA GAGCTGGG ACTGAATATA chr7:142411583-142411663 64 1.03e-04 tcttaaatag gagctggg taaaataag chr5:169705796-169705876 28 1.03e-04 GAGCAGCAAA GAGCTGAG TGGGGGCAGA chr21:40731492-40731572 64 1.42e-04 tccatcttga gggctgtg taaaatgag chr3:46530412-46530492 31 1.42e-04 ctgcacctgc agcctggg tgtggcgatg chr22:39504646-39504726 9 1.69e-04 attatttt ggactgag ctcatacact chr1:154130063-154130143 39 1.69e-04 CAGCAGGGTG GGACTGGG GCGTTCTACA chr1:183315525-183315605 56 1.69e-04 ccactggttg ggactgag cttctgcacg chr6:21264060-21264140 28 1.95e-04 GTGTTCTGGA GGGGTGAG TAGGGGGTCC chr4:37649920-37650000 58 1.95e-04 AAGGTCAGTG GGGGTGGG AAAAACCAAC chr16:14093924-14094004 20 1.95e-04 TTGCCACATT GGGGTGGG GGCTGGAGAG chr5:137335948-137336028 36 2.24e-04 gctattcatc aagctgag gtgggaggat chr18:21656285-21656365 58 2.38e-04 GCCAGATGAA AGGCTGTG CAGGGTGTAT chr11:65186204-65186284 15 2.94e-04 GGCTGCAGCT GACCTGGG AACTCCCTTC chr22:22929639-22929719 59 2.94e-04 gcactttggg agactgag gagggtggat chr17:46949094-46949174 38 2.94e-04 GTGACCTTTG GACCTGGG TACTTTCCGG chr15:91459236-91459316 32 3.07e-04 TTTCCGTCAG GGCCTGTG GCTTGGGATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCTGRG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:57075562-57075642 2.5e-05 13_[+5]_59 chr5:102393010-102393090 2.5e-05 49_[+5]_23 chr17:16189591-16189671 2.5e-05 40_[+5]_32 chr11:63298797-63298877 2.5e-05 68_[+5]_4 chr7:150019276-150019356 2.5e-05 65_[+5]_7 chr10:33345925-33346005 2.5e-05 58_[+5]_14 chr20:1182830-1182910 2.5e-05 34_[+5]_38 chr19:45748761-45748841 2.5e-05 36_[+5]_36 chr5:1132012-1132092 2.5e-05 60_[+5]_12 chr7:142502507-142502587 2.5e-05 35_[+5]_37 chr17:16396951-16397031 2.5e-05 7_[+5]_65 chr2:12223989-12224069 5.2e-05 61_[+5]_11 chr8:42124065-42124145 5.2e-05 49_[+5]_23 chr15:34948406-34948486 5.2e-05 44_[+5]_28 chr9:80507996-80508076 5.2e-05 49_[+5]_23 chr22:39168029-39168109 5.2e-05 51_[+5]_21 chr11:18713158-18713238 5.2e-05 50_[+5]_22 chr9:102796304-102796384 5.2e-05 56_[+5]_16 chr1:202791308-202791388 5.2e-05 21_[+5]_51 chr20:5103695-5103775 5.2e-05 26_[+5]_46 chr20:47904404-47904484 7.6e-05 35_[+5]_37 chr2:62532945-62533025 7.6e-05 24_[+5]_48 chr5:141776914-141776994 7.6e-05 37_[+5]_35 chr16:57855451-57855531 7.6e-05 70_[+5]_2 chr14:38065452-38065532 7.6e-05 61_[+5]_11 chr6:138291684-138291764 7.6e-05 5_[+5]_67 chr7:134845823-134845903 0.0001 25_[+5]_47 chr7:142411583-142411663 0.0001 63_[+5]_9 chr5:169705796-169705876 0.0001 27_[+5]_45 chr21:40731492-40731572 0.00014 63_[+5]_9 chr3:46530412-46530492 0.00014 30_[+5]_42 chr22:39504646-39504726 0.00017 8_[+5]_64 chr1:154130063-154130143 0.00017 38_[+5]_34 chr1:183315525-183315605 0.00017 55_[+5]_17 chr6:21264060-21264140 0.00019 27_[+5]_45 chr4:37649920-37650000 0.00019 57_[+5]_15 chr16:14093924-14094004 0.00019 19_[+5]_53 chr5:137335948-137336028 0.00022 35_[+5]_37 chr18:21656285-21656365 0.00024 57_[+5]_15 chr11:65186204-65186284 0.00029 14_[+5]_58 chr22:22929639-22929719 0.00029 58_[+5]_14 chr17:46949094-46949174 0.00029 37_[+5]_35 chr15:91459236-91459316 0.00031 31_[+5]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCTGRG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGCTGRG width=8 seqs=43 chr15:57075562-57075642 ( 14) GGGCTGGG 1 chr5:102393010-102393090 ( 50) GGGCTGGG 1 chr17:16189591-16189671 ( 41) GGGCTGGG 1 chr11:63298797-63298877 ( 69) GGGCTGAG 1 chr7:150019276-150019356 ( 66) GGGCTGGG 1 chr10:33345925-33346005 ( 59) GGGCTGGG 1 chr20:1182830-1182910 ( 35) GGGCTGGG 1 chr19:45748761-45748841 ( 37) GGGCTGGG 1 chr5:1132012-1132092 ( 61) GGGCTGGG 1 chr7:142502507-142502587 ( 36) GGGCTGAG 1 chr17:16396951-16397031 ( 8) GGGCTGAG 1 chr2:12223989-12224069 ( 62) AGGCTGAG 1 chr8:42124065-42124145 ( 50) AGGCTGAG 1 chr15:34948406-34948486 ( 45) AGGCTGAG 1 chr9:80507996-80508076 ( 50) AGGCTGAG 1 chr22:39168029-39168109 ( 52) AGGCTGAG 1 chr11:18713158-18713238 ( 51) AGGCTGAG 1 chr9:102796304-102796384 ( 57) AGGCTGAG 1 chr1:202791308-202791388 ( 22) AGGCTGAG 1 chr20:5103695-5103775 ( 27) AGGCTGAG 1 chr20:47904404-47904484 ( 36) GGCCTGAG 1 chr2:62532945-62533025 ( 25) GGCCTGGG 1 chr5:141776914-141776994 ( 38) GGCCTGAG 1 chr16:57855451-57855531 ( 71) GGCCTGGG 1 chr14:38065452-38065532 ( 62) GGCCTGGG 1 chr6:138291684-138291764 ( 6) GGCCTGAG 1 chr7:134845823-134845903 ( 26) GAGCTGGG 1 chr7:142411583-142411663 ( 64) GAGCTGGG 1 chr5:169705796-169705876 ( 28) GAGCTGAG 1 chr21:40731492-40731572 ( 64) GGGCTGTG 1 chr3:46530412-46530492 ( 31) AGCCTGGG 1 chr22:39504646-39504726 ( 9) GGACTGAG 1 chr1:154130063-154130143 ( 39) GGACTGGG 1 chr1:183315525-183315605 ( 56) GGACTGAG 1 chr6:21264060-21264140 ( 28) GGGGTGAG 1 chr4:37649920-37650000 ( 58) GGGGTGGG 1 chr16:14093924-14094004 ( 20) GGGGTGGG 1 chr5:137335948-137336028 ( 36) AAGCTGAG 1 chr18:21656285-21656365 ( 58) AGGCTGTG 1 chr11:65186204-65186284 ( 15) GACCTGGG 1 chr22:22929639-22929719 ( 59) AGACTGAG 1 chr17:46949094-46949174 ( 38) GACCTGGG 1 chr15:91459236-91459316 ( 32) GGCCTGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCTGRG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2475 E= 8.6e-009 20 -1207 154 -1207 -91 -1207 184 -1207 -150 -2 149 -1207 -1207 198 -178 -1207 -1207 -1207 -1207 194 -1207 -1207 206 -1207 89 -1207 88 -190 -1207 -1207 206 -1207 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCTGRG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 43 E= 8.6e-009 0.302326 0.000000 0.697674 0.000000 0.139535 0.000000 0.860465 0.000000 0.093023 0.232558 0.674419 0.000000 0.000000 0.930233 0.069767 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.488372 0.000000 0.441860 0.069767 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCTGRG MEME-5 regular expression -------------------------------------------------------------------------------- [GA]G[GC]CTG[AG]G -------------------------------------------------------------------------------- Time 19.38 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:100453813-100453893 1.69e-02 15_[+2(3.54e-05)]_57 chr6:139697928-139698008 1.35e-02 6_[+2(1.70e-05)]_66 chr5:40735903-40735983 2.96e-04 39_[+4(4.77e-05)]_10_[+1(6.70e-05)]_\ 15 chr4:147427636-147427716 3.95e-01 80 chr6:45123390-45123470 2.04e-02 31_[+4(8.39e-05)]_41 chr1:208076566-208076646 1.30e-01 58_[+1(1.63e-05)]_14 chr5:169705796-169705876 9.78e-02 80 chr12:96577625-96577705 2.04e-02 39_[+1(6.70e-05)]_33 chr7:142506628-142506708 1.67e-03 15_[+1(3.45e-05)]_8_[+3(7.29e-05)]_\ 41 chr18:21656285-21656365 3.13e-03 32_[+1(1.63e-05)]_40 chr10:73978289-73978369 1.74e-02 22_[+1(1.63e-05)]_50 chr20:5103695-5103775 3.58e-03 26_[+5(5.17e-05)]_16_[+2(1.70e-05)]_\ 22 chr19:14138836-14138916 1.78e-01 80 chr11:108406270-10840635 8.21e-01 80 chr9:91435094-91435174 6.64e-02 80 chr4:2165334-2165414 5.29e-01 80 chr1:173362415-173362495 1.36e-02 33_[+1(3.45e-05)]_39 chr9:115911631-115911711 1.12e-01 26_[+2(1.70e-05)]_46 chr6:136926170-136926250 8.28e-02 45_[+1(1.63e-05)]_27 chr12:34204581-34204661 5.28e-01 80 chr10:81961444-81961524 1.45e-02 25_[+1(1.63e-05)]_47 chr5:137335948-137336028 3.41e-03 65_[+2(1.70e-05)]_7 chr7:142506861-142506941 5.97e-02 65_[+2(5.08e-05)]_7 chr6:44942352-44942432 8.78e-03 13_[+1(1.63e-05)]_59 chr4:26175800-26175880 3.74e-02 53_[+1(1.63e-05)]_19 chr8:99415193-99415273 7.38e-03 11_[+1(1.63e-05)]_61 chr9:129949801-129949881 7.18e-01 80 chr6:138291684-138291764 8.22e-02 5_[+5(7.60e-05)]_67 chr1:208076766-208076846 3.42e-01 80 chr15:91459236-91459316 1.37e-03 57_[+2(1.70e-05)]_15 chr17:16396951-16397031 1.03e-03 7_[+5(2.47e-05)]_48_[+3(1.45e-05)]_\ 9 chr1:9299807-9299887 3.84e-02 16_[+1(1.63e-05)]_56 chr3:196242212-196242292 6.18e-02 6_[+2(1.70e-05)]_66 chr16:14093924-14094004 6.74e-03 66_[+1(3.45e-05)]_6 chr21:46816024-46816104 5.19e-02 58_[+1(3.45e-05)]_14 chr5:169705995-169706075 7.12e-01 80 chr7:73172954-73173034 4.32e-03 68_[+1(1.63e-05)]_4 chr6:42435527-42435607 5.44e-02 80 chr15:81281548-81281628 5.39e-03 2_[+2(1.70e-05)]_70 chr2:104123441-104123521 3.49e-02 28_[+2(1.70e-05)]_44 chr2:100253158-100253238 6.82e-01 80 chr2:178031145-178031225 1.19e-02 64_[+1(1.63e-05)]_8 chr16:14579209-14579289 1.71e-01 80 chr16:88489966-88490046 4.17e-02 9_[+2(1.70e-05)]_63 chr8:103820809-103820889 8.70e-02 4_[+1(1.63e-05)]_68 chr10:30638056-30638136 6.96e-01 80 chr7:142411583-142411663 6.95e-04 48_[+3(1.45e-05)]_24 chr9:101648016-101648096 2.20e-01 80 chr15:102164321-10216440 4.74e-03 11_[+2(1.70e-05)]_61 chr6:99873924-99874004 3.24e-03 3_[+1(8.51e-05)]_53_[+4(1.55e-05)]_\ 8 chr1:183315525-183315605 6.03e-04 80 chr19:14120049-14120129 5.30e-04 49_[+3(1.45e-05)]_23 chr10:33355965-33356045 9.87e-02 23_[+1(1.63e-05)]_49 chr1:202791308-202791388 3.57e-03 21_[+5(5.17e-05)]_22_[+2(1.70e-05)]_\ 21 chr18:68045597-68045677 4.18e-02 65_[+2(6.96e-05)]_7 chr12:132109853-13210993 5.54e-02 68_[+3(1.45e-05)]_4 chr1:45103917-45103997 1.60e-03 52_[+1(1.63e-05)]_20 chr21:36237697-36237777 1.18e-01 80 chr6:99874125-99874205 8.84e-03 34_[+3(8.91e-05)]_38 chr6:2999525-2999605 7.37e-02 16_[+1(1.63e-05)]_56 chr7:95401680-95401760 5.24e-02 34_[+1(1.63e-05)]_38 chr4:48257577-48257657 1.43e-04 59_[+2(1.70e-05)]_4_[+1(3.45e-05)]_\ 1 chr1:234664402-234664482 4.98e-01 80 chr16:12740800-12740880 1.52e-01 80 chr3:179438125-179438205 3.01e-02 28_[+1(1.63e-05)]_44 chr7:142502507-142502587 9.49e-02 35_[+5(2.47e-05)]_37 chr14:38065452-38065532 3.18e-03 5_[+2(1.70e-05)]_48_[+5(7.60e-05)]_\ 11 chr7:142424513-142424593 1.27e-01 43_[+3(7.29e-05)]_29 chr16:57855451-57855531 5.70e-02 70_[+5(7.60e-05)]_2 chr2:69137521-69137601 2.83e-01 80 chr2:98328898-98328978 3.37e-01 80 chr20:44611978-44612058 6.08e-02 9_[+1(1.63e-05)]_63 chr19:35411125-35411205 1.28e-01 22_[+3(3.05e-05)]_50 chr10:76870027-76870107 3.15e-04 57_[+2(1.70e-05)]_15 chr6:27499910-27499990 1.86e-02 11_[+1(1.63e-05)]_61 chr1:43867933-43868013 1.54e-02 37_[+1(1.63e-05)]_35 chr6:43682199-43682279 1.33e-01 80 chr8:28572448-28572528 6.64e-01 80 chr11:63286213-63286293 4.67e-02 34_[+2(1.70e-05)]_38 chr14:30855287-30855367 1.46e-01 80 chr5:1132012-1132092 1.05e-03 45_[+3(1.45e-05)]_7_[+5(2.47e-05)]_\ 12 chr1:109850112-109850192 9.96e-01 80 chr4:37649920-37650000 2.58e-03 46_[+2(1.70e-05)]_26 chr14:102154551-10215463 5.51e-01 80 chr19:45748761-45748841 8.18e-04 11_[+1(4.91e-05)]_17_[+5(2.47e-05)]_\ 36 chr1:233846011-233846091 4.34e-02 34_[+2(3.54e-05)]_38 chr12:54731211-54731291 4.37e-02 60_[+1(4.91e-05)]_12 chr22:22929844-22929924 2.02e-01 80 chr9:102796304-102796384 1.11e-02 56_[+5(5.17e-05)]_16 chr2:152672487-152672567 7.19e-03 8_[+4(1.55e-05)]_64 chr6:6885928-6886008 3.60e-01 80 chr22:22378288-22378368 5.04e-01 80 chr5:81763114-81763194 8.04e-01 80 chr1:11793567-11793647 2.78e-02 49_[+2(3.54e-05)]_7_[+2(3.54e-05)]_\ 8 chr19:50867141-50867221 1.52e-03 35_[+2(3.54e-05)]_37 chr1:196515536-196515616 2.83e-02 39_[+1(3.45e-05)]_33 chr6:167514008-167514088 6.31e-03 80 chr15:58623689-58623769 5.68e-03 21_[+1(1.63e-05)]_51 chr1:181012343-181012423 1.72e-03 19_[+2(1.70e-05)]_53 chr3:185191304-185191384 9.32e-02 80 chr1:155870178-155870258 1.31e-01 80 chr6:161394605-161394685 5.36e-02 34_[+1(1.63e-05)]_38 chr20:1236431-1236511 5.10e-03 9_[+2(3.54e-05)]_63 chr6:27509620-27509700 1.38e-02 72_[+2(1.70e-05)] chr21:36368756-36368836 4.47e-03 7_[+1(1.63e-05)]_65 chr11:38616593-38616673 4.40e-02 33_[+1(1.63e-05)]_39 chr20:1182830-1182910 7.48e-04 19_[+3(1.45e-05)]_7_[+5(2.47e-05)]_\ 38 chr8:80672396-80672476 9.65e-02 80 chr8:125968446-125968526 4.58e-04 44_[+1(1.63e-05)]_14_[+2(5.08e-05)]_\ 6 chr10:77189902-77189982 4.76e-01 80 chr1:12468769-12468849 5.47e-02 34_[+1(1.63e-05)]_38 chr17:53809039-53809119 1.20e-01 80 chr7:137999134-137999214 2.58e-02 23_[+1(1.63e-05)]_49 chr7:134845823-134845903 2.93e-03 80 chr5:141776914-141776994 3.19e-03 37_[+5(7.60e-05)]_9_[+2(1.70e-05)]_\ 18 chr10:50705562-50705642 1.35e-03 14_[+1(4.91e-05)]_58 chr6:34688108-34688188 6.05e-02 21_[+4(3.25e-05)]_51 chr1:154130063-154130143 1.20e-02 51_[+3(8.91e-05)]_21 chr5:76152859-76152939 2.47e-03 69_[+4(4.77e-05)]_3 chr11:69957990-69958070 8.81e-03 [+2(3.54e-05)]_72 chr17:75084085-75084165 2.58e-01 80 chr20:32047556-32047636 3.15e-03 13_[+4(3.25e-05)]_59 chr7:29834689-29834769 8.42e-01 80 chr17:46949094-46949174 1.19e-02 28_[+1(1.63e-05)]_44 chrX:41301732-41301812 4.58e-02 1_[+1(1.63e-05)]_71 chr2:158794673-158794753 4.36e-04 18_[+3(7.29e-05)]_14_[+2(1.70e-05)]_\ 32 chr7:116612031-116612111 6.01e-01 80 chr3:186715079-186715159 1.87e-02 35_[+2(1.70e-05)]_37 chr3:101350909-101350989 2.15e-02 41_[+3(1.45e-05)]_31 chr7:106437285-106437365 1.14e-02 72_[+4(1.55e-05)] chr3:14314406-14314486 9.13e-02 2_[+3(3.05e-05)]_70 chr1:68166536-68166616 1.09e-03 60_[+3(7.29e-05)]_2_[+1(1.63e-05)]_\ 2 chrX:129936071-129936151 4.00e-02 37_[+1(1.63e-05)]_35 chr10:33345925-33346005 7.63e-04 44_[+3(1.45e-05)]_6_[+5(2.47e-05)]_\ 14 chr19:49385483-49385563 6.01e-02 23_[+3(1.45e-05)]_13_[+3(1.45e-05)]_\ 13_[+3(1.45e-05)]_7 chr6:43894949-43895029 5.78e-02 80 chr6:147092221-147092301 9.02e-01 80 chr22:22929639-22929719 3.11e-01 80 chr7:150019276-150019356 5.53e-04 50_[+3(1.45e-05)]_7_[+5(2.47e-05)]_\ 7 chr3:142941572-142941652 2.24e-03 15_[+2(1.70e-05)]_57 chr20:1168511-1168591 2.84e-01 80 chr14:35817144-35817224 2.03e-01 80 chr7:132704542-132704622 1.36e-03 5_[+2(1.70e-05)]_39_[+1(8.51e-05)]_\ 20 chr5:95043650-95043730 9.11e-01 80 chr11:3530993-3531073 4.84e-03 11_[+4(1.55e-05)]_61 chr2:25599959-25600039 1.07e-02 50_[+2(1.70e-05)]_22 chr22:21357314-21357394 9.23e-01 80 chr1:25696694-25696774 1.09e-02 62_[+1(1.63e-05)]_10 chr18:57579004-57579084 3.85e-02 8_[+2(1.70e-05)]_64 chr9:127612284-127612364 3.82e-02 3_[+1(1.63e-05)]_69 chr2:8947406-8947486 1.17e-03 61_[+1(1.63e-05)]_11 chr9:127612484-127612564 4.08e-01 80 chr10:74648032-74648112 1.52e-01 80 chr14:32490208-32490288 5.18e-02 80 chr6:130355639-130355719 1.68e-02 32_[+1(3.45e-05)]_40 chr11:110300702-11030078 9.27e-01 80 chr11:63298797-63298877 2.68e-02 68_[+5(2.47e-05)]_4 chr8:98811076-98811156 1.15e-01 80 chr14:102144454-10214453 8.72e-03 11_[+2(1.70e-05)]_61 chr6:137440870-137440950 1.79e-01 80 chr5:55452821-55452901 9.33e-02 68_[+3(3.05e-05)]_4 chr3:37333055-37333135 5.54e-02 80 chr6:135706606-135706686 2.81e-02 45_[+2(1.70e-05)]_27 chr5:95043440-95043520 2.89e-02 24_[+4(1.55e-05)]_48 chr7:30767701-30767781 3.04e-01 80 chr8:26241642-26241722 3.32e-02 40_[+1(6.70e-05)]_32 chr17:41430095-41430175 3.15e-03 25_[+4(3.25e-05)]_47 chr13:31151661-31151741 8.18e-01 80 chr8:59573573-59573653 7.91e-02 80 chr11:9341117-9341197 8.20e-03 62_[+4(3.25e-05)]_10 chr5:125850178-125850258 9.16e-01 80 chr21:44818106-44818186 6.95e-01 80 chr15:29965585-29965665 3.68e-02 7_[+4(1.55e-05)]_65 chr4:32003800-32003880 6.82e-02 61_[+2(1.70e-05)]_11 chr1:149362407-149362487 9.16e-04 55_[+2(1.70e-05)]_7_[+3(7.29e-05)]_\ 2 chr11:34852320-34852400 2.04e-01 80 chr6:37150745-37150825 1.22e-01 41_[+2(5.08e-05)]_31 chr2:47306225-47306305 1.74e-03 51_[+2(1.70e-05)]_21 chr13:30082849-30082929 8.09e-01 80 chr20:45828638-45828718 8.30e-02 48_[+3(1.45e-05)]_24 chr13:30083050-30083130 1.64e-01 80 chr6:21264060-21264140 1.61e-02 1_[+4(8.39e-05)]_71 chr21:44596884-44596964 5.19e-01 80 chr7:137908434-137908514 6.89e-03 80 chr11:18713158-18713238 2.95e-03 20_[+3(1.45e-05)]_22_[+5(5.17e-05)]_\ 22 chr9:100361132-100361212 6.41e-02 43_[+1(1.63e-05)]_29 chr1:160919237-160919317 2.79e-01 80 chr22:23878225-23878305 8.52e-02 80 chr7:138040174-138040254 3.07e-02 47_[+3(3.05e-05)]_25 chr1:1545368-1545448 7.92e-02 24_[+4(8.39e-05)]_48 chr22:39168029-39168109 2.87e-03 19_[+3(1.45e-05)]_24_[+5(5.17e-05)]_\ 21 chr9:99994466-99994546 1.43e-01 17_[+3(3.05e-05)]_55 chr9:80507996-80508076 1.35e-03 21_[+3(1.45e-05)]_20_[+5(5.17e-05)]_\ 23 chr1:12609390-12609470 4.98e-01 80 chr3:46530412-46530492 1.67e-03 46_[+1(1.63e-05)]_26 chr1:1358106-1358186 4.21e-02 69_[+3(1.45e-05)]_3 chr12:110488108-11048818 3.52e-05 37_[+2(3.54e-05)]_21_[+3(1.45e-05)]_\ 6 chr1:162465790-162465870 2.11e-02 23_[+4(1.55e-05)]_49 chr3:44479438-44479518 2.50e-02 28_[+4(3.25e-05)]_44 chr4:154415018-154415098 8.39e-02 32_[+2(1.70e-05)]_40 chr2:169521326-169521406 8.10e-01 80 chr5:173359734-173359814 3.19e-04 55_[+1(1.63e-05)]_1_[+2(3.54e-05)]_\ 8 chr3:14293089-14293169 1.83e-02 51_[+4(1.55e-05)]_21 chrX:15901558-15901638 6.28e-04 14_[+4(1.55e-05)]_58 chr3:5124188-5124268 3.60e-01 80 chr8:42616371-42616451 9.29e-01 80 chr9:128235637-128235717 3.10e-02 14_[+1(1.63e-05)]_58 chr6:42435735-42435815 3.45e-01 80 chrX:46907578-46907658 9.43e-01 80 chr4:111170494-111170574 6.76e-01 80 chr5:162930242-162930322 1.06e-02 22_[+2(1.70e-05)]_50 chr21:40731492-40731572 1.58e-04 52_[+3(1.45e-05)]_20 chr15:34948406-34948486 2.98e-03 14_[+3(1.45e-05)]_22_[+5(5.17e-05)]_\ 28 chr2:69787052-69787132 2.44e-01 80 chr14:76400231-76400311 4.17e-03 69_[+3(1.45e-05)]_3 chr11:65186204-65186284 1.49e-01 80 chr17:16189591-16189671 1.49e-01 40_[+5(2.47e-05)]_32 chr6:158176292-158176372 3.39e-03 14_[+4(1.55e-05)]_40_[+3(4.36e-05)]_\ 10 chr20:49125545-49125625 6.97e-04 19_[+2(6.96e-05)]_34_[+3(3.05e-05)]_\ 11 chr8:42124065-42124145 1.25e-03 19_[+3(1.45e-05)]_22_[+5(5.17e-05)]_\ 23 chr16:56323935-56324015 3.09e-02 80 chr21:44391189-44391269 1.71e-02 45_[+3(1.45e-05)]_27 chr5:102393010-102393090 5.95e-04 34_[+3(7.29e-05)]_7_[+5(2.47e-05)]_\ 23 chr2:120096506-120096586 1.04e-02 41_[+4(1.55e-05)]_31 chr2:62532945-62533025 6.63e-04 6_[+1(1.63e-05)]_10_[+5(7.60e-05)]_\ 48 chr15:45876382-45876462 3.01e-02 44_[+4(1.55e-05)]_28 chr8:23366958-23367038 7.91e-03 36_[+2(1.70e-05)]_36 chr1:62332782-62332862 5.95e-01 80 chr20:47904404-47904484 1.17e-03 35_[+5(7.60e-05)]_26_[+1(1.63e-05)]_\ 3 chr1:62332986-62333066 2.70e-01 80 chr1:200855875-200855955 5.81e-02 15_[+4(3.25e-05)]_57 chr6:27500111-27500191 5.06e-01 80 chr1:241860212-241860292 2.29e-02 12_[+4(1.55e-05)]_60 chr4:138384939-138385019 1.69e-02 3_[+4(4.77e-05)]_69 chr22:39504646-39504726 7.55e-04 49_[+4(3.25e-05)]_23 chr22:23875778-23875858 9.09e-01 80 chr1:161527712-161527792 3.49e-02 25_[+3(1.45e-05)]_10_[+3(3.05e-05)]_\ 29 chr6:101168340-101168420 1.35e-01 80 chr6:151409151-151409231 3.06e-02 80 chr21:37700039-37700119 2.13e-04 65_[+3(3.05e-05)]_7 chr10:104214999-10421507 4.35e-02 17_[+4(3.25e-05)]_55 chr17:47154419-47154499 2.00e-01 80 chr1:9138454-9138534 2.18e-02 22_[+4(1.55e-05)]_50 chr7:75428255-75428335 5.67e-03 11_[+1(1.63e-05)]_61 chr21:44391389-44391469 1.45e-01 80 chr21:36368955-36369035 1.78e-01 50_[+4(6.50e-05)]_22 chr15:57075562-57075642 6.61e-03 13_[+5(2.47e-05)]_7_[+5(5.17e-05)]_\ 44 chr6:36852530-36852610 2.48e-02 80 chr2:12223989-12224069 2.03e-06 2_[+2(3.54e-05)]_21_[+3(1.45e-05)]_\ 22_[+5(5.17e-05)]_11 chr14:103017338-10301741 1.43e-02 62_[+3(3.05e-05)]_10 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n04.farnam.hpc.yale.internal ********************************************************************************