******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/HNRNPUL1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr15:99968004-99968084 1.0000 80 chr20:34327382-34327462 1.0000 80 chr2:319128-319208 1.0000 80 chr9:139621992-139622072 1.0000 80 chr20:55665955-55666035 1.0000 80 chr1:112297735-112297815 1.0000 80 chr6:27111465-27111545 1.0000 80 chr22:22840971-22841051 1.0000 80 chr2:239007197-239007277 1.0000 80 chr1:245627812-245627892 1.0000 80 chr11:6634082-6634162 1.0000 80 chr22:21928424-21928504 1.0000 80 chr1:28839612-28839692 1.0000 80 chr9:139569386-139569466 1.0000 80 chr7:153095164-153095244 1.0000 80 chr20:47902814-47902894 1.0000 80 chr7:26238236-26238316 1.0000 80 chr19:5692765-5692845 1.0000 80 chr6:133142083-133142163 1.0000 80 chr21:38823949-38824029 1.0000 80 chr1:17763422-17763502 1.0000 80 chr22:23013174-23013254 1.0000 80 chr5:2137225-2137305 1.0000 80 chr4:39457254-39457334 1.0000 80 chr11:10829297-10829377 1.0000 80 chr17:79824392-79824472 1.0000 80 chr22:22915668-22915748 1.0000 80 chr7:100028386-100028466 1.0000 80 chr2:26468107-26468187 1.0000 80 chr1:8928339-8928419 1.0000 80 chr22:22431106-22431186 1.0000 80 chr22:19634097-19634177 1.0000 80 chr8:145096780-145096860 1.0000 80 chr22:19950597-19950677 1.0000 80 chr7:129825086-129825166 1.0000 80 chr22:20010360-20010440 1.0000 80 chr4:83343219-83343299 1.0000 80 chr17:56071924-56072004 1.0000 80 chr22:21236670-21236750 1.0000 80 chr19:7985841-7985921 1.0000 80 chr1:28834471-28834551 1.0000 80 chr6:26198674-26198754 1.0000 80 chr17:62224008-62224088 1.0000 80 chr17:62501078-62501158 1.0000 80 chr7:158768347-158768427 1.0000 80 chr1:38272454-38272534 1.0000 80 chr1:3694901-3694981 1.0000 80 chr20:62326545-62326625 1.0000 80 chr12:54681184-54681264 1.0000 80 chr17:79679898-79679978 1.0000 80 chr5:180021817-180021897 1.0000 80 chr6:27109616-27109696 1.0000 80 chr1:28833908-28833988 1.0000 80 chr22:21967969-21968049 1.0000 80 chr6:293446-293526 1.0000 80 chr22:19395425-19395505 1.0000 80 chr5:154133865-154133945 1.0000 80 chr22:17255897-17255977 1.0000 80 chr22:20905797-20905877 1.0000 80 chr16:779748-779828 1.0000 80 chr8:101962113-101962193 1.0000 80 chr9:139563581-139563661 1.0000 80 chr22:19510502-19510582 1.0000 80 chr1:6244857-6244937 1.0000 80 chr2:175089226-175089306 1.0000 80 chr16:84964032-84964112 1.0000 80 chr19:17976716-17976796 1.0000 80 chr6:74226972-74227052 1.0000 80 chr1:28844274-28844354 1.0000 80 chr11:64983445-64983525 1.0000 80 chr22:22420708-22420788 1.0000 80 chr6:27107659-27107739 1.0000 80 chr1:28835091-28835171 1.0000 80 chr22:18982268-18982348 1.0000 80 chr22:21229701-21229781 1.0000 80 chr22:21009363-21009443 1.0000 80 chr2:38977526-38977606 1.0000 80 chr1:28905364-28905444 1.0000 80 chr22:20942720-20942800 1.0000 80 chr11:65192873-65192953 1.0000 80 chr15:66791169-66791249 1.0000 80 chr17:56407932-56408012 1.0000 80 chr6:74223727-74223807 1.0000 80 chr22:19666843-19666923 1.0000 80 chr9:139566203-139566283 1.0000 80 chr17:56405114-56405194 1.0000 80 chr5:40825736-40825816 1.0000 80 chr16:2010809-2010889 1.0000 80 chr22:23234858-23234938 1.0000 80 chr11:65197472-65197552 1.0000 80 chr5:40827624-40827704 1.0000 80 chr6:30693690-30693770 1.0000 80 chr17:73773129-73773209 1.0000 80 chr3:197684501-197684581 1.0000 80 chr18:9681801-9681881 1.0000 80 chr22:23253637-23253717 1.0000 80 chr1:28842427-28842507 1.0000 80 chr1:35656435-35656515 1.0000 80 chr22:20878637-20878717 1.0000 80 chr1:46051314-46051394 1.0000 80 chr5:137806640-137806720 1.0000 80 chr19:12787165-12787245 1.0000 80 chrX:153627502-153627582 1.0000 80 chr6:74225988-74226068 1.0000 80 chr1:45242082-45242162 1.0000 80 chr22:22098180-22098260 1.0000 80 chr1:28839905-28839985 1.0000 80 chr15:65588793-65588873 1.0000 80 chr7:26227579-26227659 1.0000 80 chr22:19931273-19931353 1.0000 80 chr9:139620367-139620447 1.0000 80 chr20:47905108-47905188 1.0000 80 chr3:39455419-39455499 1.0000 80 chr19:51306877-51306957 1.0000 80 chr1:149857270-149857350 1.0000 80 chr9:139617264-139617344 1.0000 80 chr17:74731359-74731439 1.0000 80 chr3:9835373-9835453 1.0000 80 chr22:21922785-21922865 1.0000 80 chr1:28196050-28196130 1.0000 80 chr10:23344369-23344449 1.0000 80 chr16:84964299-84964379 1.0000 80 chr16:780490-780570 1.0000 80 chr16:2013872-2013952 1.0000 80 chr22:20072303-20072383 1.0000 80 chr11:62621678-62621758 1.0000 80 chr1:76262387-76262467 1.0000 80 chr22:22328659-22328739 1.0000 80 chr12:123466232-12346631 1.0000 80 chr1:26147460-26147540 1.0000 80 chr1:76262912-76262992 1.0000 80 chr10:72459399-72459479 1.0000 80 chr19:49996181-49996261 1.0000 80 chr1:206592576-206592656 1.0000 80 chr6:27859987-27860067 1.0000 80 chr11:65195917-65195997 1.0000 80 chr9:139567479-139567559 1.0000 80 chr17:38096012-38096092 1.0000 80 chr22:22936539-22936619 1.0000 80 chr7:26226246-26226326 1.0000 80 chr8:129071038-129071118 1.0000 80 chr6:27792547-27792627 1.0000 80 chr6:143516705-143516785 1.0000 80 chr2:85767317-85767397 1.0000 80 chr5:32144903-32144983 1.0000 80 chr22:23102911-23102991 1.0000 80 chr1:52030700-52030780 1.0000 80 chr1:228643607-228643687 1.0000 80 chr5:111497005-111497085 1.0000 80 chr6:74229983-74230063 1.0000 80 chr1:226251179-226251259 1.0000 80 chr5:137802348-137802428 1.0000 80 chr6:32941265-32941345 1.0000 80 chr6:27798516-27798596 1.0000 80 chr22:23360461-23360541 1.0000 80 chr11:62434024-62434104 1.0000 80 chr6:68589020-68589100 1.0000 80 chr20:60964116-60964196 1.0000 80 chr19:59065968-59066048 1.0000 80 chr22:21944171-21944251 1.0000 80 chr6:26205608-26205688 1.0000 80 chr17:42467816-42467896 1.0000 80 chr22:22916795-22916875 1.0000 80 chr22:22126850-22126930 1.0000 80 chr22:22762788-22762868 1.0000 80 chr11:93474150-93474230 1.0000 80 chr6:33240255-33240335 1.0000 80 chr7:154448493-154448573 1.0000 80 chr17:41400210-41400290 1.0000 80 chr17:7212206-7212286 1.0000 80 chr15:75052724-75052804 1.0000 80 chr22:21293095-21293175 1.0000 80 chr21:46495067-46495147 1.0000 80 chr5:137805369-137805449 1.0000 80 chr10:72164828-72164908 1.0000 80 chr13:91886305-91886385 1.0000 80 chr6:39148867-39148947 1.0000 80 chr1:173836713-173836793 1.0000 80 chr11:62619002-62619082 1.0000 80 chr22:23024684-23024764 1.0000 80 chr1:145043079-145043159 1.0000 80 chr5:137805901-137805981 1.0000 80 chr17:56409474-56409554 1.0000 80 chr11:65271806-65271886 1.0000 80 chr6:28725838-28725918 1.0000 80 chr17:56743690-56743770 1.0000 80 chr22:20116922-20117002 1.0000 80 chr22:23046156-23046236 1.0000 80 chr19:13266043-13266123 1.0000 80 chr1:147735987-147736067 1.0000 80 chr7:120723337-120723417 1.0000 80 chr22:22931100-22931180 1.0000 80 chr11:123611255-12361133 1.0000 80 chr22:22329910-22329990 1.0000 80 chr1:146555915-146555995 1.0000 80 chr7:150101422-150101502 1.0000 80 chr1:40318356-40318436 1.0000 80 chr6:27775003-27775083 1.0000 80 chr11:65194957-65195037 1.0000 80 chr22:23034002-23034082 1.0000 80 chr3:15330882-15330962 1.0000 80 chr3:195445654-195445734 1.0000 80 chr6:31644447-31644527 1.0000 80 chr19:19172160-19172240 1.0000 80 chr11:65196817-65196897 1.0000 80 chr6:34358859-34358939 1.0000 80 chr6:27113839-27113919 1.0000 80 chr6:26131298-26131378 1.0000 80 chr22:21948395-21948475 1.0000 80 chr11:65270540-65270620 1.0000 80 chr6:32162953-32163033 1.0000 80 chr6:27792764-27792844 1.0000 80 chr6:27101589-27101669 1.0000 80 chr6:133138853-133138933 1.0000 80 chr22:22264241-22264321 1.0000 80 chr6:74224253-74224333 1.0000 80 chr21:46494078-46494158 1.0000 80 chr6:143832352-143832432 1.0000 80 chr3:42642027-42642107 1.0000 80 chr22:22785714-22785794 1.0000 80 chr6:119558588-119558668 1.0000 80 chr12:7053258-7053338 1.0000 80 chr1:28837273-28837353 1.0000 80 chr8:128750824-128750904 1.0000 80 chr21:44511217-44511297 1.0000 80 chr22:22551048-22551128 1.0000 80 chr22:23088197-23088277 1.0000 80 chr22:22918937-22919017 1.0000 80 chr1:173830118-173830198 1.0000 80 chr6:170843154-170843234 1.0000 80 chr6:26197566-26197646 1.0000 80 chr16:88948723-88948803 1.0000 80 chr22:19951586-19951666 1.0000 80 chr1:26606107-26606187 1.0000 80 chr19:17971561-17971641 1.0000 80 chr22:19451975-19452055 1.0000 80 chr1:1335346-1335426 1.0000 80 chr1:76262639-76262719 1.0000 80 chr19:49120103-49120183 1.0000 80 chr3:186502703-186502783 1.0000 80 chr21:46494278-46494358 1.0000 80 chr11:8710200-8710280 1.0000 80 chr20:54990368-54990448 1.0000 80 chr22:21953672-21953752 1.0000 80 chr17:41393365-41393445 1.0000 80 chr10:14227682-14227762 1.0000 80 chr1:28833026-28833106 1.0000 80 chr19:18117794-18117874 1.0000 80 chr7:130795572-130795652 1.0000 80 chr22:22073333-22073413 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_HNRNPUL1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/HNRNPUL1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.226 C 0.253 G 0.278 T 0.244 Background letter frequencies (from file dataset with add-one prior applied): A 0.226 C 0.253 G 0.277 T 0.244 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GGSTGAGG MEME-1 width = 8 sites = 18 llr = 169 E-value = 7.1e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGSTGAGG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::7:: pos.-specific C ::7::::: probability G aa3:a:aa matrix T :::a:3:: bits 2.1 1.9 ** ** ** 1.7 ** ** ** 1.5 ** ** ** Relative 1.3 ** ***** Entropy 1.1 ******** (13.6 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGCTGAGG consensus G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSTGAGG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:18117794-18117874 25 2.28e-05 CCCCATCACG GGCTGAGG GTGACCGTGT chr21:46494078-46494158 17 2.28e-05 ctaccaggga ggctgagg cggcaggatc chr11:62619002-62619082 30 2.28e-05 agctactcgg ggctgagg caggacaatc chr6:74229983-74230063 58 2.28e-05 ATGAAGCGAC GGCTGAGG ACGGAAAGGC chr1:76262387-76262467 37 2.28e-05 GATACCTGCA GGCTGAGG ATGTTCCAGT chr1:28842427-28842507 29 2.28e-05 cactttggta ggctgagg cgggtggatc chr22:22420708-22420788 42 2.28e-05 ctactcagga ggctgagg caggggaatc chr2:175089226-175089306 35 2.28e-05 gtatttggga ggctgagg caggagggag chr4:39457254-39457334 34 2.28e-05 ctagtgggga ggctgagg tgggagaaac chr10:72164828-72164908 43 4.77e-05 GAGGCCCCAC GGGTGAGG GGAGTCCCCA chr22:22916795-22916875 43 4.77e-05 GAGACTGTTT GGGTGAGG CCAATAGCTT chr1:3694901-3694981 13 4.77e-05 GGGCCCAGCA GGGTGAGG CCAGTTCCCA chr19:7985841-7985921 63 4.77e-05 GGTAATGCGT GGGTGAGG CGAGGGCTAA chr11:62434024-62434104 23 7.22e-05 GCTGGATGTG GGCTGTGG GACTTCCAGC chr10:72459399-72459479 59 7.22e-05 GGAGTCACTA GGCTGTGG GGCAGGGAAT chr22:20942720-20942800 15 7.22e-05 TCCAAAGGCA GGCTGTGG CCAGGGGCAG chr11:65192873-65192953 8 9.91e-05 TTGTTTG GGGTGTGG GTGTTATCAA chr9:139563581-139563661 42 9.91e-05 CCTCCTTCCT GGGTGTGG GAGCTCCACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSTGAGG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:18117794-18117874 2.3e-05 24_[+1]_48 chr21:46494078-46494158 2.3e-05 16_[+1]_56 chr11:62619002-62619082 2.3e-05 29_[+1]_43 chr6:74229983-74230063 2.3e-05 57_[+1]_15 chr1:76262387-76262467 2.3e-05 36_[+1]_36 chr1:28842427-28842507 2.3e-05 28_[+1]_44 chr22:22420708-22420788 2.3e-05 41_[+1]_31 chr2:175089226-175089306 2.3e-05 34_[+1]_38 chr4:39457254-39457334 2.3e-05 33_[+1]_39 chr10:72164828-72164908 4.8e-05 42_[+1]_30 chr22:22916795-22916875 4.8e-05 42_[+1]_30 chr1:3694901-3694981 4.8e-05 12_[+1]_60 chr19:7985841-7985921 4.8e-05 62_[+1]_10 chr11:62434024-62434104 7.2e-05 22_[+1]_50 chr10:72459399-72459479 7.2e-05 58_[+1]_14 chr22:20942720-20942800 7.2e-05 14_[+1]_58 chr11:65192873-65192953 9.9e-05 7_[+1]_65 chr9:139563581-139563661 9.9e-05 41_[+1]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSTGAGG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGSTGAGG width=8 seqs=18 chr19:18117794-18117874 ( 25) GGCTGAGG 1 chr21:46494078-46494158 ( 17) GGCTGAGG 1 chr11:62619002-62619082 ( 30) GGCTGAGG 1 chr6:74229983-74230063 ( 58) GGCTGAGG 1 chr1:76262387-76262467 ( 37) GGCTGAGG 1 chr1:28842427-28842507 ( 29) GGCTGAGG 1 chr22:22420708-22420788 ( 42) GGCTGAGG 1 chr2:175089226-175089306 ( 35) GGCTGAGG 1 chr4:39457254-39457334 ( 34) GGCTGAGG 1 chr10:72164828-72164908 ( 43) GGGTGAGG 1 chr22:22916795-22916875 ( 43) GGGTGAGG 1 chr1:3694901-3694981 ( 13) GGGTGAGG 1 chr19:7985841-7985921 ( 63) GGGTGAGG 1 chr11:62434024-62434104 ( 23) GGCTGTGG 1 chr10:72459399-72459479 ( 59) GGCTGTGG 1 chr22:20942720-20942800 ( 15) GGCTGTGG 1 chr11:65192873-65192953 ( 8) GGGTGTGG 1 chr9:139563581-139563661 ( 42) GGGTGTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSTGAGG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1187 E= 7.1e+000 -1081 -1081 185 -1081 -1081 -1081 185 -1081 -1081 140 26 -1081 -1081 -1081 -1081 203 -1081 -1081 185 -1081 168 -1081 -1081 19 -1081 -1081 185 -1081 -1081 -1081 185 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSTGAGG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 7.1e+000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.333333 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.722222 0.000000 0.000000 0.277778 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSTGAGG MEME-1 regular expression -------------------------------------------------------------------------------- GG[CG]TG[AT]GG -------------------------------------------------------------------------------- Time 4.95 secs. ******************************************************************************** ******************************************************************************** MOTIF AGGAAAAA MEME-2 width = 8 sites = 4 llr = 46 E-value = 2.7e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGGAAAAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A a::aaaaa pos.-specific C :::::::: probability G :aa::::: matrix T :::::::: bits 2.1 * ***** 1.9 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (16.6 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGGAAAAA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAAAAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr22:22329910-22329990 34 1.02e-05 GAATCACATT AGGAAAAA ATGTCCTGTA chr20:60964116-60964196 4 1.02e-05 TGT AGGAAAAA CCATGGAGAC chr18:9681801-9681881 56 1.02e-05 ctctaccact aggaaaaa tctctgagta chr7:26238236-26238316 8 1.02e-05 AGTCAAT AGGAAAAA CCTCAGAGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAAAAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:22329910-22329990 1e-05 33_[+2]_39 chr20:60964116-60964196 1e-05 3_[+2]_69 chr18:9681801-9681881 1e-05 55_[+2]_17 chr7:26238236-26238316 1e-05 7_[+2]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAAAAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGGAAAAA width=8 seqs=4 chr22:22329910-22329990 ( 34) AGGAAAAA 1 chr20:60964116-60964196 ( 4) AGGAAAAA 1 chr18:9681801-9681881 ( 56) AGGAAAAA 1 chr7:26238236-26238316 ( 8) AGGAAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAAAAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.1553 E= 2.7e+004 214 -865 -865 -865 -865 -865 185 -865 -865 -865 185 -865 214 -865 -865 -865 214 -865 -865 -865 214 -865 -865 -865 214 -865 -865 -865 214 -865 -865 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAAAAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 2.7e+004 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGAAAAA MEME-2 regular expression -------------------------------------------------------------------------------- AGGAAAAA -------------------------------------------------------------------------------- Time 8.73 secs. ******************************************************************************** ******************************************************************************** MOTIF CASCCMCA MEME-3 width = 8 sites = 19 llr = 170 E-value = 4.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CASCCMCA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :8:2:5:a pos.-specific C a268a5a: probability G ::4::::: matrix T :::::::: bits 2.1 * 1.9 * * ** 1.7 * * ** 1.5 ** * ** Relative 1.3 ** ** ** Entropy 1.1 ** ***** (12.9 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACCCACA consensus GA C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASCCMCA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:18117794-18117874 63 1.20e-05 CCGCCCCCTC CACCCACA CACCTCACTG chr6:293446-293526 69 1.20e-05 GCGCTCCACC CACCCACA TCTC chr20:55665955-55666035 33 1.20e-05 cacacacctc cacccaca cacacCTccg chr20:54990368-54990448 20 2.54e-05 TTACGTAGGC CACCCCCA CCCACCCACG chr3:42642027-42642107 63 2.54e-05 TTCGGTTGAC CACCCCCA TCTAGACTGT chr8:129071038-129071118 4 2.54e-05 CTC CACCCCCA GCATGACAGA chr17:62501078-62501158 39 3.85e-05 TCTCTCTCAA CAGCCACA GTTAACATTT chr7:153095164-153095244 23 3.85e-05 GAAGGGGTTT CAGCCACA TTGTGCCTGC chr21:46494278-46494358 21 5.31e-05 GGCCGCGCTC CAGCCCCA ACGGCCCCGC chr1:28837273-28837353 45 5.31e-05 CCAGATGAGT CAGCCCCA TTCGTCTGTA chr6:119558588-119558668 7 5.31e-05 TTTTTT CAGCCCCA CTGCGAGTTT chr1:146555915-146555995 15 5.31e-05 CTGCTAAAAG CAGCCCCA CGTAGAAAGG chr9:139620367-139620447 56 6.38e-05 GCTTCAGATA CACACACA GCTCATTTAT chr11:62434024-62434104 69 7.58e-05 ACCAAATCTC CACACCCA GTGG chr22:21953672-21953752 64 8.75e-05 CTATCACAGC CAGACACA AGGTTCTAT chr22:19395425-19395505 12 1.01e-04 AAAGTTGTAG CCCCCACA TGGCCCGTGA chr22:21236670-21236750 32 1.01e-04 CCTCCATAGG CCCCCACA ATAGCCAGGT chr17:79824392-79824472 23 1.01e-04 GCCTCTGCGG CCCCCACA AAGGCCTAGC chr22:22126850-22126930 17 1.14e-04 CCTCCAGTCT CAGACCCA TGCCCTCTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASCCMCA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:18117794-18117874 1.2e-05 62_[+3]_10 chr6:293446-293526 1.2e-05 68_[+3]_4 chr20:55665955-55666035 1.2e-05 32_[+3]_40 chr20:54990368-54990448 2.5e-05 19_[+3]_53 chr3:42642027-42642107 2.5e-05 62_[+3]_10 chr8:129071038-129071118 2.5e-05 3_[+3]_69 chr17:62501078-62501158 3.8e-05 38_[+3]_34 chr7:153095164-153095244 3.8e-05 22_[+3]_50 chr21:46494278-46494358 5.3e-05 20_[+3]_52 chr1:28837273-28837353 5.3e-05 44_[+3]_28 chr6:119558588-119558668 5.3e-05 6_[+3]_66 chr1:146555915-146555995 5.3e-05 14_[+3]_58 chr9:139620367-139620447 6.4e-05 55_[+3]_17 chr11:62434024-62434104 7.6e-05 68_[+3]_4 chr22:21953672-21953752 8.7e-05 63_[+3]_9 chr22:19395425-19395505 0.0001 11_[+3]_61 chr22:21236670-21236750 0.0001 31_[+3]_41 chr17:79824392-79824472 0.0001 22_[+3]_50 chr22:22126850-22126930 0.00011 16_[+3]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASCCMCA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CASCCMCA width=8 seqs=19 chr19:18117794-18117874 ( 63) CACCCACA 1 chr6:293446-293526 ( 69) CACCCACA 1 chr20:55665955-55666035 ( 33) CACCCACA 1 chr20:54990368-54990448 ( 20) CACCCCCA 1 chr3:42642027-42642107 ( 63) CACCCCCA 1 chr8:129071038-129071118 ( 4) CACCCCCA 1 chr17:62501078-62501158 ( 39) CAGCCACA 1 chr7:153095164-153095244 ( 23) CAGCCACA 1 chr21:46494278-46494358 ( 21) CAGCCCCA 1 chr1:28837273-28837353 ( 45) CAGCCCCA 1 chr6:119558588-119558668 ( 7) CAGCCCCA 1 chr1:146555915-146555995 ( 15) CAGCCCCA 1 chr9:139620367-139620447 ( 56) CACACACA 1 chr11:62434024-62434104 ( 69) CACACCCA 1 chr22:21953672-21953752 ( 64) CAGACACA 1 chr22:19395425-19395505 ( 12) CCCCCACA 1 chr22:21236670-21236750 ( 32) CCCCCACA 1 chr17:79824392-79824472 ( 23) CCCCCACA 1 chr22:22126850-22126930 ( 17) CAGACCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASCCMCA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.3477 E= 4.4e+004 -1089 198 -1089 -1089 190 -68 -1089 -1089 -1089 120 60 -1089 -10 164 -1089 -1089 -1089 198 -1089 -1089 122 91 -1089 -1089 -1089 198 -1089 -1089 215 -1089 -1089 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASCCMCA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 4.4e+004 0.000000 1.000000 0.000000 0.000000 0.842105 0.157895 0.000000 0.000000 0.000000 0.578947 0.421053 0.000000 0.210526 0.789474 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.526316 0.473684 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASCCMCA MEME-3 regular expression -------------------------------------------------------------------------------- CA[CG][CA]C[AC]CA -------------------------------------------------------------------------------- Time 12.50 secs. ******************************************************************************** ******************************************************************************** MOTIF CACACAAA MEME-4 width = 8 sites = 2 llr = 23 E-value = 1.1e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACACAAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a:a:aaa pos.-specific C a:a:a::: probability G :::::::: matrix T :::::::: bits 2.1 * * *** 1.9 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (16.7 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACACAAA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACAAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:130795572-130795652 17 9.55e-06 GCCTCCTCAC CACACAAA CTGCCCATCC chr6:31644447-31644527 23 9.55e-06 AAACAGTTTA CACACAAA TTTATTTGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACAAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:130795572-130795652 9.5e-06 16_[+4]_56 chr6:31644447-31644527 9.5e-06 22_[+4]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACAAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACACAAA width=8 seqs=2 chr7:130795572-130795652 ( 17) CACACAAA 1 chr6:31644447-31644527 ( 23) CACACAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACAAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 1.1e+005 -765 198 -765 -765 214 -765 -765 -765 -765 198 -765 -765 214 -765 -765 -765 -765 198 -765 -765 214 -765 -765 -765 214 -765 -765 -765 214 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACAAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.1e+005 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACAAA MEME-4 regular expression -------------------------------------------------------------------------------- CACACAAA -------------------------------------------------------------------------------- Time 16.24 secs. ******************************************************************************** ******************************************************************************** MOTIF CAAAAACA MEME-5 width = 8 sites = 2 llr = 23 E-value = 4.9e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAAAAACA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :aaaaa:a pos.-specific C a:::::a: probability G :::::::: matrix T :::::::: bits 2.1 ***** * 1.9 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (16.8 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAAAAACA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAAACA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr8:128750824-128750904 59 8.53e-06 AGACCTTCAT CAAAAACA TCATCATCCA chr6:68589020-68589100 5 8.53e-06 tttg caaaaaca gcagaagcag -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAAACA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:128750824-128750904 8.5e-06 58_[+5]_14 chr6:68589020-68589100 8.5e-06 4_[+5]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAAACA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAAAAACA width=8 seqs=2 chr8:128750824-128750904 ( 59) CAAAAACA 1 chr6:68589020-68589100 ( 5) CAAAAACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAAACA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 4.9e+004 -765 198 -765 -765 214 -765 -765 -765 214 -765 -765 -765 214 -765 -765 -765 214 -765 -765 -765 214 -765 -765 -765 -765 198 -765 -765 214 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAAACA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 4.9e+004 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAAACA MEME-5 regular expression -------------------------------------------------------------------------------- CAAAAACA -------------------------------------------------------------------------------- Time 19.97 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:99968004-99968084 1.00e+00 80 chr20:34327382-34327462 9.40e-01 80 chr2:319128-319208 9.39e-01 80 chr9:139621992-139622072 7.86e-01 80 chr20:55665955-55666035 4.64e-03 4_[+3(6.38e-05)]_8_[+3(6.38e-05)]_4_\ [+3(1.20e-05)]_26_[+3(6.38e-05)]_6 chr1:112297735-112297815 9.47e-01 80 chr6:27111465-27111545 8.75e-01 80 chr22:22840971-22841051 1.00e-02 68_[+4(9.41e-05)]_4 chr2:239007197-239007277 3.90e-01 80 chr1:245627812-245627892 9.38e-01 80 chr11:6634082-6634162 6.54e-01 80 chr22:21928424-21928504 2.22e-02 80 chr1:28839612-28839692 7.53e-01 80 chr9:139569386-139569466 9.73e-01 80 chr7:153095164-153095244 1.94e-01 22_[+3(3.85e-05)]_50 chr20:47902814-47902894 1.00e+00 80 chr7:26238236-26238316 2.59e-02 7_[+2(1.02e-05)]_65 chr19:5692765-5692845 6.73e-01 80 chr6:133142083-133142163 2.33e-01 80 chr21:38823949-38824029 1.00e+00 80 chr1:17763422-17763502 9.85e-01 80 chr22:23013174-23013254 4.39e-01 80 chr5:2137225-2137305 9.83e-01 80 chr4:39457254-39457334 8.01e-03 33_[+1(2.28e-05)]_39 chr11:10829297-10829377 8.20e-01 80 chr17:79824392-79824472 7.09e-03 80 chr22:22915668-22915748 9.88e-01 80 chr7:100028386-100028466 2.08e-01 80 chr2:26468107-26468187 4.40e-01 14_[+1(9.91e-05)]_58 chr1:8928339-8928419 1.98e-01 80 chr22:22431106-22431186 1.05e-01 80 chr22:19634097-19634177 1.34e-01 80 chr8:145096780-145096860 9.86e-01 80 chr22:19950597-19950677 8.67e-01 80 chr7:129825086-129825166 5.45e-01 80 chr22:20010360-20010440 9.14e-01 80 chr4:83343219-83343299 9.81e-01 80 chr17:56071924-56072004 2.66e-01 80 chr22:21236670-21236750 1.25e-01 80 chr19:7985841-7985921 2.97e-01 62_[+1(4.77e-05)]_10 chr1:28834471-28834551 4.54e-01 80 chr6:26198674-26198754 2.37e-01 80 chr17:62224008-62224088 6.57e-01 80 chr17:62501078-62501158 8.31e-02 38_[+3(3.85e-05)]_34 chr7:158768347-158768427 9.63e-01 80 chr1:38272454-38272534 1.45e-02 16_[+4(9.41e-05)]_56 chr1:3694901-3694981 1.61e-01 12_[+1(4.77e-05)]_60 chr20:62326545-62326625 6.17e-01 80 chr12:54681184-54681264 5.86e-01 80 chr17:79679898-79679978 8.34e-01 80 chr5:180021817-180021897 8.69e-01 80 chr6:27109616-27109696 1.00e+00 80 chr1:28833908-28833988 5.05e-01 80 chr22:21967969-21968049 9.02e-01 80 chr6:293446-293526 5.00e-02 68_[+3(1.20e-05)]_4 chr22:19395425-19395505 7.73e-02 80 chr5:154133865-154133945 9.65e-01 80 chr22:17255897-17255977 2.62e-01 80 chr22:20905797-20905877 8.47e-01 80 chr16:779748-779828 3.68e-01 80 chr8:101962113-101962193 2.13e-02 80 chr9:139563581-139563661 3.40e-02 41_[+1(9.91e-05)]_31 chr22:19510502-19510582 6.57e-01 80 chr1:6244857-6244937 1.04e-01 80 chr2:175089226-175089306 1.25e-01 34_[+1(2.28e-05)]_38 chr16:84964032-84964112 4.52e-01 49_[+1(9.91e-05)]_23 chr19:17976716-17976796 9.72e-01 80 chr6:74226972-74227052 3.17e-01 80 chr1:28844274-28844354 9.41e-01 80 chr11:64983445-64983525 8.68e-01 80 chr22:22420708-22420788 1.25e-01 41_[+1(2.28e-05)]_31 chr6:27107659-27107739 9.22e-01 80 chr1:28835091-28835171 6.12e-01 80 chr22:18982268-18982348 9.72e-01 80 chr22:21229701-21229781 6.00e-01 80 chr22:21009363-21009443 8.15e-01 80 chr2:38977526-38977606 1.46e-01 80 chr1:28905364-28905444 2.83e-01 80 chr22:20942720-20942800 3.23e-03 14_[+1(7.22e-05)]_58 chr11:65192873-65192953 1.90e-01 7_[+1(9.91e-05)]_65 chr15:66791169-66791249 9.56e-01 80 chr17:56407932-56408012 9.61e-01 80 chr6:74223727-74223807 3.05e-01 80 chr22:19666843-19666923 7.95e-01 80 chr9:139566203-139566283 6.36e-01 80 chr17:56405114-56405194 6.05e-01 80 chr5:40825736-40825816 9.92e-01 80 chr16:2010809-2010889 7.66e-01 80 chr22:23234858-23234938 4.60e-01 80 chr11:65197472-65197552 9.96e-01 80 chr5:40827624-40827704 4.37e-03 50_[+4(9.41e-05)]_22 chr6:30693690-30693770 1.59e-01 80 chr17:73773129-73773209 9.41e-01 80 chr3:197684501-197684581 9.99e-01 80 chr18:9681801-9681881 4.36e-02 55_[+2(1.02e-05)]_17 chr22:23253637-23253717 8.65e-01 80 chr1:28842427-28842507 1.97e-01 28_[+1(2.28e-05)]_44 chr1:35656435-35656515 8.09e-02 80 chr22:20878637-20878717 6.29e-01 80 chr1:46051314-46051394 4.68e-01 80 chr5:137806640-137806720 8.12e-01 80 chr19:12787165-12787245 4.52e-01 80 chrX:153627502-153627582 8.86e-01 80 chr6:74225988-74226068 7.61e-01 80 chr1:45242082-45242162 7.44e-01 80 chr22:22098180-22098260 2.65e-02 80 chr1:28839905-28839985 5.76e-01 80 chr15:65588793-65588873 3.34e-01 80 chr7:26227579-26227659 3.53e-01 80 chr22:19931273-19931353 8.00e-01 80 chr9:139620367-139620447 9.19e-03 55_[+3(6.38e-05)]_17 chr20:47905108-47905188 7.97e-01 80 chr3:39455419-39455499 9.23e-01 80 chr19:51306877-51306957 2.47e-02 49_[+2(6.36e-05)]_23 chr1:149857270-149857350 2.62e-02 45_[+4(9.41e-05)]_27 chr9:139617264-139617344 5.00e-01 80 chr17:74731359-74731439 1.66e-01 80 chr3:9835373-9835453 1.00e+00 80 chr22:21922785-21922865 6.97e-01 80 chr1:28196050-28196130 3.70e-01 80 chr10:23344369-23344449 2.17e-01 80 chr16:84964299-84964379 3.98e-01 12_[+1(9.91e-05)]_4_[+1(9.91e-05)]_\ 6_[+1(7.22e-05)]_34 chr16:780490-780570 9.79e-01 80 chr16:2013872-2013952 9.41e-01 80 chr22:20072303-20072383 9.98e-01 80 chr11:62621678-62621758 4.99e-02 80 chr1:76262387-76262467 1.93e-01 36_[+1(2.28e-05)]_36 chr22:22328659-22328739 5.77e-01 80 chr12:123466232-12346631 2.23e-01 80 chr1:26147460-26147540 5.14e-01 80 chr1:76262912-76262992 9.52e-01 80 chr10:72459399-72459479 2.40e-01 58_[+1(7.22e-05)]_14 chr19:49996181-49996261 3.38e-01 80 chr1:206592576-206592656 4.64e-01 80 chr6:27859987-27860067 9.98e-01 80 chr11:65195917-65195997 9.94e-01 80 chr9:139567479-139567559 4.95e-01 80 chr17:38096012-38096092 5.05e-01 80 chr22:22936539-22936619 2.13e-05 15_[+3(6.38e-05)]_[+4(9.55e-06)]_8_\ [+4(9.55e-06)]_33 chr7:26226246-26226326 5.08e-01 80 chr8:129071038-129071118 1.28e-01 3_[+3(2.54e-05)]_69 chr6:27792547-27792627 6.54e-01 80 chr6:143516705-143516785 2.24e-01 80 chr2:85767317-85767397 3.10e-01 80 chr5:32144903-32144983 4.63e-02 80 chr22:23102911-23102991 1.61e-01 80 chr1:52030700-52030780 9.52e-01 80 chr1:228643607-228643687 8.64e-01 80 chr5:111497005-111497085 6.54e-01 80 chr6:74229983-74230063 3.59e-02 57_[+1(2.28e-05)]_15 chr1:226251179-226251259 1.00e+00 80 chr5:137802348-137802428 9.95e-01 80 chr6:32941265-32941345 6.80e-01 80 chr6:27798516-27798596 4.94e-01 80 chr22:23360461-23360541 1.00e+00 80 chr11:62434024-62434104 4.31e-03 22_[+1(7.22e-05)]_38_[+3(7.58e-05)]_\ 4 chr6:68589020-68589100 1.05e-02 4_[+5(8.53e-06)]_68 chr20:60964116-60964196 2.13e-02 3_[+2(1.02e-05)]_69 chr19:59065968-59066048 1.66e-01 80 chr22:21944171-21944251 2.99e-01 80 chr6:26205608-26205688 7.66e-01 80 chr17:42467816-42467896 4.53e-01 80 chr22:22916795-22916875 2.55e-01 42_[+1(4.77e-05)]_30 chr22:22126850-22126930 3.62e-01 80 chr22:22762788-22762868 9.15e-01 80 chr11:93474150-93474230 5.25e-01 80 chr6:33240255-33240335 9.61e-01 80 chr7:154448493-154448573 3.16e-01 80 chr17:41400210-41400290 2.60e-01 80 chr17:7212206-7212286 6.21e-01 80 chr15:75052724-75052804 8.67e-03 80 chr22:21293095-21293175 5.74e-03 80 chr21:46495067-46495147 8.92e-01 80 chr5:137805369-137805449 2.54e-01 80 chr10:72164828-72164908 2.26e-01 42_[+1(4.77e-05)]_30 chr13:91886305-91886385 8.02e-03 80 chr6:39148867-39148947 9.93e-01 80 chr1:173836713-173836793 8.06e-02 80 chr11:62619002-62619082 1.22e-02 29_[+1(2.28e-05)]_43 chr22:23024684-23024764 9.96e-01 80 chr1:145043079-145043159 8.58e-01 80 chr5:137805901-137805981 4.28e-01 80 chr17:56409474-56409554 3.39e-03 80 chr11:65271806-65271886 9.65e-01 80 chr6:28725838-28725918 2.82e-01 80 chr17:56743690-56743770 1.45e-04 17_[+5(5.89e-05)]_55 chr22:20116922-20117002 8.84e-01 80 chr22:23046156-23046236 3.17e-01 80 chr19:13266043-13266123 1.51e-01 80 chr1:147735987-147736067 1.02e-01 80 chr7:120723337-120723417 8.39e-02 80 chr22:22931100-22931180 4.70e-01 80 chr11:123611255-12361133 1.47e-01 80 chr22:22329910-22329990 4.78e-04 33_[+2(1.02e-05)]_11_[+4(9.41e-05)]_\ 20 chr1:146555915-146555995 1.66e-02 14_[+3(5.31e-05)]_58 chr7:150101422-150101502 2.70e-01 80 chr1:40318356-40318436 9.87e-01 80 chr6:27775003-27775083 8.11e-01 80 chr11:65194957-65195037 2.54e-01 80 chr22:23034002-23034082 7.98e-01 80 chr3:15330882-15330962 1.19e-01 80 chr3:195445654-195445734 5.31e-01 80 chr6:31644447-31644527 2.20e-03 22_[+4(9.55e-06)]_50 chr19:19172160-19172240 4.97e-01 80 chr11:65196817-65196897 6.90e-01 80 chr6:34358859-34358939 9.31e-01 80 chr6:27113839-27113919 3.50e-01 80 chr6:26131298-26131378 1.38e-01 80 chr22:21948395-21948475 9.44e-01 80 chr11:65270540-65270620 7.31e-01 80 chr6:32162953-32163033 7.59e-01 80 chr6:27792764-27792844 9.10e-01 80 chr6:27101589-27101669 6.21e-01 80 chr6:133138853-133138933 1.52e-01 80 chr22:22264241-22264321 9.91e-01 80 chr6:74224253-74224333 5.18e-01 80 chr21:46494078-46494158 1.69e-01 16_[+1(2.28e-05)]_56 chr6:143832352-143832432 3.54e-01 80 chr3:42642027-42642107 1.94e-01 62_[+3(2.54e-05)]_10 chr22:22785714-22785794 9.90e-01 80 chr6:119558588-119558668 1.76e-01 6_[+3(5.31e-05)]_66 chr12:7053258-7053338 3.50e-01 80 chr1:28837273-28837353 7.76e-03 44_[+3(5.31e-05)]_28 chr8:128750824-128750904 4.55e-03 58_[+5(8.53e-06)]_14 chr21:44511217-44511297 1.70e-01 80 chr22:22551048-22551128 1.38e-02 80 chr22:23088197-23088277 4.78e-02 80 chr22:22918937-22919017 8.83e-01 80 chr1:173830118-173830198 8.29e-01 80 chr6:170843154-170843234 9.36e-01 80 chr6:26197566-26197646 8.29e-01 80 chr16:88948723-88948803 4.52e-01 34_[+1(9.91e-05)]_38 chr22:19951586-19951666 6.75e-01 80 chr1:26606107-26606187 6.05e-01 80 chr19:17971561-17971641 3.06e-02 80 chr22:19451975-19452055 8.06e-01 80 chr1:1335346-1335426 4.37e-01 80 chr1:76262639-76262719 4.99e-01 80 chr19:49120103-49120183 3.13e-01 80 chr3:186502703-186502783 9.82e-01 80 chr21:46494278-46494358 2.52e-01 20_[+3(5.31e-05)]_52 chr11:8710200-8710280 5.41e-02 80 chr20:54990368-54990448 5.90e-03 19_[+3(2.54e-05)]_53 chr22:21953672-21953752 4.84e-03 63_[+3(8.75e-05)]_9 chr17:41393365-41393445 1.27e-02 56_[+4(9.41e-05)]_16 chr10:14227682-14227762 7.13e-01 80 chr1:28833026-28833106 8.54e-01 80 chr19:18117794-18117874 6.80e-04 24_[+1(2.28e-05)]_30_[+3(1.20e-05)]_\ 10 chr7:130795572-130795652 9.35e-03 16_[+4(9.55e-06)]_56 chr22:22073333-22073413 9.98e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n06.farnam.hpc.yale.internal ********************************************************************************