******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/HNRNPK.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr1:145017677-145017757 1.0000 80 chrX:10805546-10805626 1.0000 80 chr7:1709828-1709908 1.0000 80 chr2:182471319-182471399 1.0000 80 chr11:58201437-58201517 1.0000 80 chr1:91415895-91415975 1.0000 80 chr22:50746069-50746149 1.0000 80 chr22:21257548-21257628 1.0000 80 chr1:1052367-1052447 1.0000 80 chr2:203442149-203442229 1.0000 80 chr2:174778935-174779015 1.0000 80 chr19:15288837-15288917 1.0000 80 chr10:61505166-61505246 1.0000 80 chr4:165676765-165676845 1.0000 80 chr21:47580959-47581039 1.0000 80 chr1:235465690-235465770 1.0000 80 chr21:44073667-44073747 1.0000 80 chr6:20965667-20965747 1.0000 80 chr21:40050904-40050984 1.0000 80 chr6:157791943-157792023 1.0000 80 chr15:89615855-89615935 1.0000 80 chr4:1768976-1769056 1.0000 80 chr1:244096993-244097073 1.0000 80 chr8:100125140-100125220 1.0000 80 chr10:35104314-35104394 1.0000 80 chr1:203811773-203811853 1.0000 80 chr7:99273104-99273184 1.0000 80 chr1:159613324-159613404 1.0000 80 chr16:5348703-5348783 1.0000 80 chr18:19749215-19749295 1.0000 80 chr10:38133752-38133832 1.0000 80 chr1:219755803-219755883 1.0000 80 chr10:13142091-13142171 1.0000 80 chr1:222362709-222362789 1.0000 80 chr12:40432618-40432698 1.0000 80 chr2:211343539-211343619 1.0000 80 chr2:145058353-145058433 1.0000 80 chr10:77432199-77432279 1.0000 80 chr2:120602893-120602973 1.0000 80 chr7:66891797-66891877 1.0000 80 chr7:65589367-65589447 1.0000 80 chr4:12267350-12267430 1.0000 80 chr10:120967243-12096732 1.0000 80 chr1:10125986-10126066 1.0000 80 chr1:173578164-173578244 1.0000 80 chr13:100623495-10062357 1.0000 80 chr12:109049024-10904910 1.0000 80 chr2:65939169-65939249 1.0000 80 chr13:95977953-95978033 1.0000 80 chr3:9770326-9770406 1.0000 80 chr13:93231428-93231508 1.0000 80 chr22:21460183-21460263 1.0000 80 chr7:124802766-124802846 1.0000 80 chr6:112094870-112094950 1.0000 80 chr7:35879630-35879710 1.0000 80 chr7:132712281-132712361 1.0000 80 chr3:5145578-5145658 1.0000 80 chr1:231291725-231291805 1.0000 80 chr10:63491551-63491631 1.0000 80 chr3:171481377-171481457 1.0000 80 chr6:153086624-153086704 1.0000 80 chr16:51508789-51508869 1.0000 80 chr10:70262813-70262893 1.0000 80 chr13:23500598-23500678 1.0000 80 chr15:40068417-40068497 1.0000 80 chr16:46612248-46612328 1.0000 80 chr7:127346198-127346278 1.0000 80 chr10:32144160-32144240 1.0000 80 chr11:77489314-77489394 1.0000 80 chr7:66931255-66931335 1.0000 80 chr15:81812987-81813067 1.0000 80 chr12:117799028-11779910 1.0000 80 chr3:151514069-151514149 1.0000 80 chr17:44202486-44202566 1.0000 80 chr7:121030981-121031061 1.0000 80 chr6:153539479-153539559 1.0000 80 chr2:153102321-153102401 1.0000 80 chr2:170348046-170348126 1.0000 80 chr21:37717391-37717471 1.0000 80 chr14:90767271-90767351 1.0000 80 chr1:168115521-168115601 1.0000 80 chr8:4032313-4032393 1.0000 80 chr7:138087650-138087730 1.0000 80 chr5:124969351-124969431 1.0000 80 chr8:124624242-124624322 1.0000 80 chr2:75422371-75422451 1.0000 80 chr15:29967047-29967127 1.0000 80 chr19:51406065-51406145 1.0000 80 chr9:37286678-37286758 1.0000 80 chr5:17431559-17431639 1.0000 80 chr18:29616630-29616710 1.0000 80 chr3:18902788-18902868 1.0000 80 chr10:16984902-16984982 1.0000 80 chr12:120288308-12028838 1.0000 80 chr9:132716180-132716260 1.0000 80 chr16:5348363-5348443 1.0000 80 chr12:109253810-10925389 1.0000 80 chr6:24238431-24238511 1.0000 80 chr18:33339473-33339553 1.0000 80 chr9:90413503-90413583 1.0000 80 chr1:21141130-21141210 1.0000 80 chr19:55646260-55646340 1.0000 80 chr7:123280814-123280894 1.0000 80 chr1:191129962-191130042 1.0000 80 chr5:42978674-42978754 1.0000 80 chr6:6624646-6624726 1.0000 80 chr1:220387084-220387164 1.0000 80 chr2:177405851-177405931 1.0000 80 chr1:220074385-220074465 1.0000 80 chr17:39004997-39005077 1.0000 80 chr2:9678220-9678300 1.0000 80 chr3:165194297-165194377 1.0000 80 chr15:90545257-90545337 1.0000 80 chr17:73138819-73138899 1.0000 80 chr10:64841269-64841349 1.0000 80 chr12:31650907-31650987 1.0000 80 chr1:180054152-180054232 1.0000 80 chr5:39006904-39006984 1.0000 80 chr2:180811257-180811337 1.0000 80 chr3:184613293-184613373 1.0000 80 chr18:23883365-23883445 1.0000 80 chr2:102450522-102450602 1.0000 80 chr1:115702774-115702854 1.0000 80 chr4:151828540-151828620 1.0000 80 chr10:72314599-72314679 1.0000 80 chr17:75352631-75352711 1.0000 80 chr2:80391669-80391749 1.0000 80 chr5:180527745-180527825 1.0000 80 chr6:110547653-110547733 1.0000 80 chr7:130895540-130895620 1.0000 80 chr16:23847217-23847297 1.0000 80 chr3:141747170-141747250 1.0000 80 chr1:85222521-85222601 1.0000 80 chr19:37845028-37845108 1.0000 80 chr6:163005711-163005791 1.0000 80 chr5:44888698-44888778 1.0000 80 chr7:25809361-25809441 1.0000 80 chr5:44779434-44779514 1.0000 80 chr3:19316220-19316300 1.0000 80 chr3:149687937-149688017 1.0000 80 chr7:90404830-90404910 1.0000 80 chr21:40188061-40188141 1.0000 80 chr1:237214326-237214406 1.0000 80 chr2:170595228-170595308 1.0000 80 chr8:87437147-87437227 1.0000 80 chr6:159384258-159384338 1.0000 80 chr4:129894727-129894807 1.0000 80 chr6:6537867-6537947 1.0000 80 chr1:221873490-221873570 1.0000 80 chr11:74810873-74810953 1.0000 80 chr1:182992113-182992193 1.0000 80 chr5:176559847-176559927 1.0000 80 chr7:108174323-108174403 1.0000 80 chr11:125844337-12584441 1.0000 80 chr2:157505233-157505313 1.0000 80 chr19:526019-526099 1.0000 80 chr8:98748693-98748773 1.0000 80 chr12:92775786-92775866 1.0000 80 chr21:38645949-38646029 1.0000 80 chr6:153539679-153539759 1.0000 80 chr4:26780133-26780213 1.0000 80 chr18:27714136-27714216 1.0000 80 chr1:35669083-35669163 1.0000 80 chr8:142483057-142483137 1.0000 80 chr15:102033458-10203353 1.0000 80 chr18:21594627-21594707 1.0000 80 chr8:97262965-97263045 1.0000 80 chr7:6703511-6703591 1.0000 80 chr1:198044583-198044663 1.0000 80 chr5:15411127-15411207 1.0000 80 chr8:79100839-79100919 1.0000 80 chr12:121268227-12126830 1.0000 80 chr6:134133728-134133808 1.0000 80 chr4:125580123-125580203 1.0000 80 chr16:69205619-69205699 1.0000 80 chr8:68252035-68252115 1.0000 80 chr3:23864235-23864315 1.0000 80 chr1:212641681-212641761 1.0000 80 chr2:3738122-3738202 1.0000 80 chr1:232861188-232861268 1.0000 80 chr5:56545478-56545558 1.0000 80 chr6:49483518-49483598 1.0000 80 chr9:129638405-129638485 1.0000 80 chr9:3876712-3876792 1.0000 80 chr17:54623439-54623519 1.0000 80 chr4:94370015-94370095 1.0000 80 chr18:28181655-28181735 1.0000 80 chr7:77396240-77396320 1.0000 80 chr11:102297507-10229758 1.0000 80 chr2:32088488-32088568 1.0000 80 chr19:40669171-40669251 1.0000 80 chr5:70962986-70963066 1.0000 80 chr19:59096921-59097001 1.0000 80 chr8:132919903-132919983 1.0000 80 chr6:91767572-91767652 1.0000 80 chr1:32273031-32273111 1.0000 80 chr8:87180333-87180413 1.0000 80 chr5:130614326-130614406 1.0000 80 chr1:9703567-9703647 1.0000 80 chr5:77743734-77743814 1.0000 80 chr2:163605260-163605340 1.0000 80 chr4:1580709-1580789 1.0000 80 chr8:130491165-130491245 1.0000 80 chr5:50249292-50249372 1.0000 80 chr3:149482238-149482318 1.0000 80 chr11:34006997-34007077 1.0000 80 chr2:6368563-6368643 1.0000 80 chr3:5781127-5781207 1.0000 80 chr19:35759849-35759929 1.0000 80 chr9:4339900-4339980 1.0000 80 chr6:32353958-32354038 1.0000 80 chr7:1546095-1546175 1.0000 80 chr11:5140285-5140365 1.0000 80 chr16:47159824-47159904 1.0000 80 chr14:80677976-80678056 1.0000 80 chr7:22048460-22048540 1.0000 80 chr1:216649151-216649231 1.0000 80 chr5:43579252-43579332 1.0000 80 chr2:163605491-163605571 1.0000 80 chr4:151579565-151579645 1.0000 80 chr10:71922303-71922383 1.0000 80 chr2:15821358-15821438 1.0000 80 chr7:28877726-28877806 1.0000 80 chr5:122770689-122770769 1.0000 80 chr4:18537726-18537806 1.0000 80 chr6:50603294-50603374 1.0000 80 chr17:66192722-66192802 1.0000 80 chr5:34698060-34698140 1.0000 80 chr4:110797955-110798035 1.0000 80 chr10:6682563-6682643 1.0000 80 chr5:77447567-77447647 1.0000 80 chr21:44382883-44382963 1.0000 80 chr4:74326734-74326814 1.0000 80 chr20:48878512-48878592 1.0000 80 chr2:153480479-153480559 1.0000 80 chr16:61646160-61646240 1.0000 80 chr6:159364586-159364666 1.0000 80 chr9:132372575-132372655 1.0000 80 chr4:127265773-127265853 1.0000 80 chr11:16507563-16507643 1.0000 80 chr1:235575313-235575393 1.0000 80 chr7:150676309-150676389 1.0000 80 chr1:59887060-59887140 1.0000 80 chr10:73958120-73958200 1.0000 80 chr19:11723782-11723862 1.0000 80 chr3:50654569-50654649 1.0000 80 chr18:45456855-45456935 1.0000 80 chr6:25451137-25451217 1.0000 80 chr8:37978033-37978113 1.0000 80 chr1:67772392-67772472 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_HNRNPK/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/HNRNPK.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.286 C 0.212 G 0.203 T 0.299 Background letter frequencies (from file dataset with add-one prior applied): A 0.286 C 0.212 G 0.203 T 0.299 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GGGARGGG MEME-1 width = 8 sites = 52 llr = 450 E-value = 2.2e-027 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGARGGG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2::731:2 pos.-specific C ::23::1: probability G 8a8:7998 matrix T :::::::: bits 2.3 * 2.1 * 1.8 * * 1.6 *** ** Relative 1.4 *** *** Entropy 1.2 *** **** (12.5 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGAGGGG consensus CA A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGARGGG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr10:73958120-73958200 5 4.06e-06 gagg gggagggg agggaaggga chr4:127265773-127265853 12 4.06e-06 gggaagagag gggagggg CAATATATAA chr11:5140285-5140365 4 4.06e-06 gag gggagggg agAGAAAAAT chr1:232861188-232861268 4 4.06e-06 gag gggagggg agggAGCCTT chr12:121268227-12126830 54 4.06e-06 gggaagaagg gggagggg gaaggggagg chr5:124969351-124969431 8 4.06e-06 aggggag gggagggg aggaggggga chr7:138087650-138087730 3 4.06e-06 ag gggagggg aAAAGAAAAG chr11:77489314-77489394 11 4.06e-06 gatgggggag gggagggg aAAAAATACC chr7:6703511-6703591 12 7.07e-06 GGGTCGGCGG GGGCGGGG CCCGCACTGT chr16:23847217-23847297 20 7.07e-06 CAAATGAGGA GGGCGGGG CTGGCCCGGG chr10:13142091-13142171 32 7.07e-06 GAGCCGCGCT GGGCGGGG TCGCCAGGCC chr22:50746069-50746149 72 7.07e-06 GAGGAGGGGA GGGCGGGG A chr7:1709828-1709908 36 7.07e-06 gcgcggcgag gggcgggg ccgcgcgcgc chr1:32273031-32273111 8 1.28e-05 aagggga gggaaggg acttttaaat chr1:221873490-221873570 30 1.28e-05 ggaagggaga gggaaggg aagagggagg chr12:120288308-12028838 29 1.28e-05 ggaagggaaa gggaaggg GCTGTCACTT chr10:16984902-16984982 2 1.28e-05 g gggaaggg gaaaggaaag chr13:23500598-23500678 54 1.28e-05 GAGCTGCGGA GGGAAGGG GAGGAGCAGG chr1:222362709-222362789 3 1.28e-05 aa gggaaggg aGAAAGGAAA chr8:142483057-142483137 7 2.13e-05 TGGGGC GGGCAGGG TCAGGGAGAG chr7:123280814-123280894 1 2.13e-05 . ggcagggg ttgaaaaact chr10:35104314-35104394 22 2.13e-05 GCGCACATGC GGCAGGGG GAGGCGCGGC chr3:165194297-165194377 18 2.70e-05 gaaggaggga gggaggga aagagggaga chr2:177405851-177405931 4 2.70e-05 gga gggaggga gaaaggaagg chr14:90767271-90767351 68 3.27e-05 TATGTTGTGA AGGAGGGG GAAGC chr1:231291725-231291805 62 3.27e-05 GTGAGACCTC AGGAGGGG TCTTCTCTTC chr3:149687937-149688017 48 4.01e-05 ccgggggccg ggccgggg ccgccgccTC chr15:90545257-90545337 26 4.01e-05 CGGGAGGCCC GGGAGGCG ACGGTGGCGG chr5:180527745-180527825 17 4.44e-05 CGGCGCTGAC GGGCGGGA CTGGAGGTGG chr2:153480479-153480559 25 5.46e-05 CAAAATGAAG GGCAAGGG ACTGTGGCTA chr16:69205619-69205699 5 6.26e-05 ggaa gggaaggA AAACCAGTAT chr18:29616630-29616710 2 6.26e-05 a gggaagga gAAAATGGTT chr13:100623495-10062357 68 6.58e-05 GCTGCAGCAC GGGCGGCG GCTGC chr18:19749215-19749295 71 6.58e-05 TTGTCTGCCT GGGCGGCG CG chr12:109253810-10925389 1 7.39e-05 . AGGAaggg aaaatacact chr6:112094870-112094950 4 7.96e-05 aga gggagagg gagaAATACA chr17:66192722-66192802 70 1.02e-04 TTCCGCGCTG GGGCAGGA TCT chr6:50603294-50603374 23 1.30e-04 gaggaagaga aggaggga TTATGTGTGG chr7:130895540-130895620 28 1.30e-04 TGAAGTGGCC AGGAGGGA GACCAAATTA chr1:1052367-1052447 52 1.30e-04 CCAGCGCGCA GGGTGGGG GGGCGCTGCA chr1:182992113-182992193 57 1.44e-04 CTCCCGCGCG GGGAGCGG GTCTGCGAGG chr21:44382883-44382963 23 1.60e-04 CGGCCACCAA GGGAGGCA CCCTGTCCAG chr6:6624646-6624726 4 1.60e-04 gat gggatggg ataaaatgga chr2:32088488-32088568 3 1.68e-04 ag gggaaagg gaggaaggaa chr7:132712281-132712361 48 1.68e-04 ggggaacttt gggaaagg tattaacctc chr4:1580709-1580789 44 1.84e-04 GCAGGCGCAG AGCCGGGG CGCTCCCCCC chr4:1768976-1769056 2 1.84e-04 A AGCCGGGG TCACGCTCCA chr21:44073667-44073747 13 1.84e-04 gCGGGCGGCC GGGAGGAG GAGCGCGCGA chr7:150676309-150676389 70 1.99e-04 CCCTTATTTA GGCAAGGA GGC chr18:45456855-45456935 54 2.05e-04 gcccgggccc ggccggcg gcccgggcgc chr9:132372575-132372655 38 2.22e-04 CCCCGGCGCG AGCAAGGG CGTGGAGTCC chr11:74810873-74810953 66 2.52e-04 TCagaaagaa aggaagga agaaaga -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGARGGG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:73958120-73958200 4.1e-06 4_[+1]_68 chr4:127265773-127265853 4.1e-06 11_[+1]_61 chr11:5140285-5140365 4.1e-06 3_[+1]_69 chr1:232861188-232861268 4.1e-06 3_[+1]_69 chr12:121268227-12126830 4.1e-06 53_[+1]_19 chr5:124969351-124969431 4.1e-06 7_[+1]_65 chr7:138087650-138087730 4.1e-06 2_[+1]_70 chr11:77489314-77489394 4.1e-06 10_[+1]_62 chr7:6703511-6703591 7.1e-06 11_[+1]_61 chr16:23847217-23847297 7.1e-06 19_[+1]_53 chr10:13142091-13142171 7.1e-06 31_[+1]_41 chr22:50746069-50746149 7.1e-06 71_[+1]_1 chr7:1709828-1709908 7.1e-06 35_[+1]_37 chr1:32273031-32273111 1.3e-05 7_[+1]_65 chr1:221873490-221873570 1.3e-05 29_[+1]_43 chr12:120288308-12028838 1.3e-05 28_[+1]_44 chr10:16984902-16984982 1.3e-05 1_[+1]_71 chr13:23500598-23500678 1.3e-05 53_[+1]_19 chr1:222362709-222362789 1.3e-05 2_[+1]_70 chr8:142483057-142483137 2.1e-05 6_[+1]_66 chr7:123280814-123280894 2.1e-05 [+1]_72 chr10:35104314-35104394 2.1e-05 21_[+1]_51 chr3:165194297-165194377 2.7e-05 17_[+1]_55 chr2:177405851-177405931 2.7e-05 3_[+1]_69 chr14:90767271-90767351 3.3e-05 67_[+1]_5 chr1:231291725-231291805 3.3e-05 61_[+1]_11 chr3:149687937-149688017 4e-05 47_[+1]_25 chr15:90545257-90545337 4e-05 25_[+1]_47 chr5:180527745-180527825 4.4e-05 16_[+1]_56 chr2:153480479-153480559 5.5e-05 24_[+1]_48 chr16:69205619-69205699 6.3e-05 4_[+1]_68 chr18:29616630-29616710 6.3e-05 1_[+1]_71 chr13:100623495-10062357 6.6e-05 67_[+1]_5 chr18:19749215-19749295 6.6e-05 70_[+1]_2 chr12:109253810-10925389 7.4e-05 [+1]_72 chr6:112094870-112094950 8e-05 3_[+1]_69 chr17:66192722-66192802 0.0001 69_[+1]_3 chr6:50603294-50603374 0.00013 22_[+1]_50 chr7:130895540-130895620 0.00013 27_[+1]_45 chr1:1052367-1052447 0.00013 51_[+1]_21 chr1:182992113-182992193 0.00014 56_[+1]_16 chr21:44382883-44382963 0.00016 22_[+1]_50 chr6:6624646-6624726 0.00016 3_[+1]_69 chr2:32088488-32088568 0.00017 2_[+1]_70 chr7:132712281-132712361 0.00017 47_[+1]_25 chr4:1580709-1580789 0.00018 43_[+1]_29 chr4:1768976-1769056 0.00018 1_[+1]_71 chr21:44073667-44073747 0.00018 12_[+1]_60 chr7:150676309-150676389 0.0002 69_[+1]_3 chr18:45456855-45456935 0.0002 53_[+1]_19 chr9:132372575-132372655 0.00022 37_[+1]_35 chr11:74810873-74810953 0.00025 65_[+1]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGARGGG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGARGGG width=8 seqs=52 chr10:73958120-73958200 ( 5) GGGAGGGG 1 chr4:127265773-127265853 ( 12) GGGAGGGG 1 chr11:5140285-5140365 ( 4) GGGAGGGG 1 chr1:232861188-232861268 ( 4) GGGAGGGG 1 chr12:121268227-12126830 ( 54) GGGAGGGG 1 chr5:124969351-124969431 ( 8) GGGAGGGG 1 chr7:138087650-138087730 ( 3) GGGAGGGG 1 chr11:77489314-77489394 ( 11) GGGAGGGG 1 chr7:6703511-6703591 ( 12) GGGCGGGG 1 chr16:23847217-23847297 ( 20) GGGCGGGG 1 chr10:13142091-13142171 ( 32) GGGCGGGG 1 chr22:50746069-50746149 ( 72) GGGCGGGG 1 chr7:1709828-1709908 ( 36) GGGCGGGG 1 chr1:32273031-32273111 ( 8) GGGAAGGG 1 chr1:221873490-221873570 ( 30) GGGAAGGG 1 chr12:120288308-12028838 ( 29) GGGAAGGG 1 chr10:16984902-16984982 ( 2) GGGAAGGG 1 chr13:23500598-23500678 ( 54) GGGAAGGG 1 chr1:222362709-222362789 ( 3) GGGAAGGG 1 chr8:142483057-142483137 ( 7) GGGCAGGG 1 chr7:123280814-123280894 ( 1) GGCAGGGG 1 chr10:35104314-35104394 ( 22) GGCAGGGG 1 chr3:165194297-165194377 ( 18) GGGAGGGA 1 chr2:177405851-177405931 ( 4) GGGAGGGA 1 chr14:90767271-90767351 ( 68) AGGAGGGG 1 chr1:231291725-231291805 ( 62) AGGAGGGG 1 chr3:149687937-149688017 ( 48) GGCCGGGG 1 chr15:90545257-90545337 ( 26) GGGAGGCG 1 chr5:180527745-180527825 ( 17) GGGCGGGA 1 chr2:153480479-153480559 ( 25) GGCAAGGG 1 chr16:69205619-69205699 ( 5) GGGAAGGA 1 chr18:29616630-29616710 ( 2) GGGAAGGA 1 chr13:100623495-10062357 ( 68) GGGCGGCG 1 chr18:19749215-19749295 ( 71) GGGCGGCG 1 chr12:109253810-10925389 ( 1) AGGAAGGG 1 chr6:112094870-112094950 ( 4) GGGAGAGG 1 chr17:66192722-66192802 ( 70) GGGCAGGA 1 chr6:50603294-50603374 ( 23) AGGAGGGA 1 chr7:130895540-130895620 ( 28) AGGAGGGA 1 chr1:1052367-1052447 ( 52) GGGTGGGG 1 chr1:182992113-182992193 ( 57) GGGAGCGG 1 chr21:44382883-44382963 ( 23) GGGAGGCA 1 chr6:6624646-6624726 ( 4) GGGATGGG 1 chr2:32088488-32088568 ( 3) GGGAAAGG 1 chr7:132712281-132712361 ( 48) GGGAAAGG 1 chr4:1580709-1580789 ( 44) AGCCGGGG 1 chr4:1768976-1769056 ( 2) AGCCGGGG 1 chr21:44073667-44073747 ( 13) GGGAGGAG 1 chr7:150676309-150676389 ( 70) GGCAAGGA 1 chr18:45456855-45456935 ( 54) GGCCGGCG 1 chr9:132372575-132372655 ( 38) AGCAAGGG 1 chr11:74810873-74810953 ( 66) AGGAAGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGARGGG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.5697 E= 2.2e-027 -73 -1234 203 -1234 -1234 -1234 230 -1234 -1234 -29 203 -1234 131 34 -1234 -395 19 -1234 169 -395 -231 -346 219 -1234 -389 -114 213 -1234 -44 -1234 196 -1234 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGARGGG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 52 E= 2.2e-027 0.173077 0.000000 0.826923 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.173077 0.826923 0.000000 0.711538 0.269231 0.000000 0.019231 0.326923 0.000000 0.653846 0.019231 0.057692 0.019231 0.923077 0.000000 0.019231 0.096154 0.884615 0.000000 0.211538 0.000000 0.788462 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGARGGG MEME-1 regular expression -------------------------------------------------------------------------------- GGG[AC][GA]GG[GA] -------------------------------------------------------------------------------- Time 5.04 secs. ******************************************************************************** ******************************************************************************** MOTIF YCCYYYCC MEME-2 width = 8 sites = 63 llr = 496 E-value = 5.4e-019 ******************************************************************************** -------------------------------------------------------------------------------- Motif YCCYYYCC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 57a637aa probability G :1::1::: matrix T 52:453:: bits 2.3 * ** 2.1 * ** 1.8 * ** 1.6 * ** Relative 1.4 * ** Entropy 1.2 * *** (11.4 bits) 0.9 **** *** 0.7 **** *** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCCCTCCC consensus CT TCT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCCYYYCC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:25451137-25451217 73 5.75e-06 ttctcctctc cccctccc chr7:150676309-150676389 21 5.75e-06 TAGCCGCAGG CCCCTCCC CCCGGCCAGC chr4:74326734-74326814 30 5.75e-06 acttcccctc cccctccc cttcccttcc chr7:1546095-1546175 70 5.75e-06 cctccccctc cccctccc cct chr3:141747170-141747250 65 5.75e-06 ACTAATTCTT CCCCTCCC CCCCCACC chr10:72314599-72314679 61 5.75e-06 TTTTGAGcct cccctccc ctctcctccc chr4:1768976-1769056 58 5.75e-06 GGCCCCCGCG CCCCTCCC GGCCTGGGAA chr9:132372575-132372655 6 9.83e-06 CCCGC CCCCCCCC CACCGGCGTG chr1:59887060-59887140 72 1.80e-05 TTAAAACTcc tccctccc t chr2:163605260-163605340 70 1.80e-05 TTAATCCTTC Tccctccc ctc chr18:21594627-21594707 66 1.80e-05 tccctcctct tccctccc gtcttct chr15:102033458-10203353 6 1.80e-05 ATTTC TCCCTCCC CTCGCCAGGG chr16:23847217-23847297 46 1.80e-05 GGGCTCCGCC TCCCTCCC CCGCAGCTGG chr16:5348363-5348443 72 1.80e-05 tctctcccct tccctccc c chr6:153539479-153539559 73 1.80e-05 ttatagAGct tccctccc chr13:93231428-93231508 69 1.80e-05 TTATGctctc tccctccc tccc chr9:129638405-129638485 72 2.37e-05 ttccctcctt tccccccc t chr7:1709828-1709908 14 2.37e-05 GAGCTTGAAT Tccccccc ggccgcgcgg chr16:47159824-47159904 73 3.18e-05 acattaactc cccttccc chr4:94370015-94370095 72 3.18e-05 cttccccttc cccttccc t chr2:157505233-157505313 68 3.18e-05 AAAATGTTtt cccttccc ttccc chr1:180054152-180054232 5 3.18e-05 GCTT Cccttccc cctttcctct chr5:17431559-17431639 69 3.18e-05 ATGttttctt cccttccc ccat chr18:45456855-45456935 32 4.15e-05 CGTCTTcccg ccccgccc ccaggcccgg chr7:6703511-6703591 30 4.15e-05 CCCGCACTGT CCCCGCCC CATGTGGGTG chr8:142483057-142483137 70 4.15e-05 tcggcccagg ccccgccc acc chr22:50746069-50746149 43 4.15e-05 GAGCTGCCGG CCCCGCCC CCGACGAGGG chr2:153480479-153480559 69 5.29e-05 TCCATACAAT Tccttccc ttcc chr5:77743734-77743814 28 5.29e-05 ccttcctccc tccttccc cctctttccc chr1:244096993-244097073 71 6.92e-05 taagatgttt tcctcccc tt chr18:23883365-23883445 66 8.04e-05 cactttcata ccccctcc actttca chr19:35759849-35759929 28 1.06e-04 ATCTCCTCCG TCCCCTCC TGCCGCGCGG chr5:56545478-56545558 70 1.06e-04 ACTTGGCTTC TCCCCTCC TCT chr19:51406065-51406145 42 1.06e-04 cattgagttt tcccctcc gtgcacatgg chr3:50654569-50654649 61 1.47e-04 CGACCGCCTC TCCTGCCC CTCGCCGGTA chr4:1580709-1580789 54 1.47e-04 AGCCGGGGCG CTCCCCCC ATTGCACCGC chr1:1052367-1052447 26 1.47e-04 TGTCCCCGGG CCCTCTCC TAGCTGGGCC chr4:110797955-110798035 67 1.80e-04 TAATTTTctt tcctttcc tttcct chr5:130614326-130614406 65 1.80e-04 tattggcagt tccTTtcc tttcctct chr19:59096921-59097001 65 1.80e-04 tcttttcctt tcctttcc tttccttt chr7:66931255-66931335 69 1.80e-04 tTGtttcctt tcctttcc tttc chr10:38133752-38133832 67 1.80e-04 aCTAtttcct tcctttcc ttttct chr10:6682563-6682643 47 1.99e-04 tcctctcctg tcctctcc tctcctgtcc chr3:149687937-149688017 60 2.13e-04 ccggggccgc cgccTCCC ACAGCCGGAG chr5:180527745-180527825 73 2.28e-04 GGTGCACCTC CGCCCCCC chr1:219755803-219755883 42 2.36e-04 tttcagcata ctctcccc gcaaaaaaaa chr21:44382883-44382963 31 2.57e-04 AAGGGAGGCA CCCTGTCC AGACCAAGCC chr15:29967047-29967127 32 2.57e-04 ggcgcccctg ctccgccc agtcccgcgg chr8:98748693-98748773 52 3.02e-04 ACATGGGCCA TTCTCCCC ACCTCCCCAT chr6:159384258-159384338 65 3.02e-04 CATAATTTAT CTCCTTCC TCTCTTCC chr21:47580959-47581039 9 3.02e-04 GGCTGCGG CTCCTTCC TGGCTTCCCT chr2:177405851-177405931 45 3.36e-04 aggaaggaTT TCCTGTCC CAATCTGGCT chr5:77447567-77447647 73 3.62e-04 ttttatttcc ttccttcc chr12:117799028-11779910 32 3.62e-04 CCTCCGAGTC CGCCGCCC CGCGCGGCTG chr7:99273104-99273184 65 3.92e-04 GCTTGTGACT TTCCCTCC AGGGGTAA chr17:66192722-66192802 48 4.07e-04 TCCGCGCGCC TGCTCCCC TTAGTTCCGC chr15:40068417-40068497 62 4.07e-04 AATCTGCAAG TGCTCCCC AAACACACCG chr1:35669083-35669163 64 4.57e-04 Ttctccctct ctctctcc ttttccctc chr1:145017677-145017757 73 4.57e-04 ctccttctca ctctctcc chr2:163605491-163605571 7 5.11e-04 ccttcc ttctttcc tctcttTTGC chr7:35879630-35879710 68 5.11e-04 ttcctttctt ttctttcc ctttt chr6:112094870-112094950 63 5.28e-04 TCACTACTCC TTCTCTCC CTCTTTTAGA chr17:75352631-75352711 31 6.39e-04 ggacacagag tCCACCCC CATGAAGGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCCYYYCC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:25451137-25451217 5.8e-06 72_[+2] chr7:150676309-150676389 5.8e-06 20_[+2]_52 chr4:74326734-74326814 5.8e-06 29_[+2]_43 chr7:1546095-1546175 5.8e-06 69_[+2]_3 chr3:141747170-141747250 5.8e-06 64_[+2]_8 chr10:72314599-72314679 5.8e-06 60_[+2]_12 chr4:1768976-1769056 5.8e-06 57_[+2]_15 chr9:132372575-132372655 9.8e-06 5_[+2]_67 chr1:59887060-59887140 1.8e-05 71_[+2]_1 chr2:163605260-163605340 1.8e-05 69_[+2]_3 chr18:21594627-21594707 1.8e-05 65_[+2]_7 chr15:102033458-10203353 1.8e-05 5_[+2]_67 chr16:23847217-23847297 1.8e-05 45_[+2]_27 chr16:5348363-5348443 1.8e-05 71_[+2]_1 chr6:153539479-153539559 1.8e-05 72_[+2] chr13:93231428-93231508 1.8e-05 68_[+2]_4 chr9:129638405-129638485 2.4e-05 71_[+2]_1 chr7:1709828-1709908 2.4e-05 13_[+2]_59 chr16:47159824-47159904 3.2e-05 72_[+2] chr4:94370015-94370095 3.2e-05 71_[+2]_1 chr2:157505233-157505313 3.2e-05 67_[+2]_5 chr1:180054152-180054232 3.2e-05 4_[+2]_68 chr5:17431559-17431639 3.2e-05 68_[+2]_4 chr18:45456855-45456935 4.1e-05 31_[+2]_41 chr7:6703511-6703591 4.1e-05 29_[+2]_43 chr8:142483057-142483137 4.1e-05 69_[+2]_3 chr22:50746069-50746149 4.1e-05 42_[+2]_30 chr2:153480479-153480559 5.3e-05 68_[+2]_4 chr5:77743734-77743814 5.3e-05 27_[+2]_45 chr1:244096993-244097073 6.9e-05 70_[+2]_2 chr18:23883365-23883445 8e-05 65_[+2]_7 chr19:35759849-35759929 0.00011 27_[+2]_45 chr5:56545478-56545558 0.00011 69_[+2]_3 chr19:51406065-51406145 0.00011 41_[+2]_31 chr3:50654569-50654649 0.00015 60_[+2]_12 chr4:1580709-1580789 0.00015 53_[+2]_19 chr1:1052367-1052447 0.00015 25_[+2]_47 chr4:110797955-110798035 0.00018 66_[+2]_6 chr5:130614326-130614406 0.00018 64_[+2]_8 chr19:59096921-59097001 0.00018 64_[+2]_8 chr7:66931255-66931335 0.00018 68_[+2]_4 chr10:38133752-38133832 0.00018 66_[+2]_6 chr10:6682563-6682643 0.0002 46_[+2]_26 chr3:149687937-149688017 0.00021 59_[+2]_13 chr5:180527745-180527825 0.00023 72_[+2] chr1:219755803-219755883 0.00024 41_[+2]_31 chr21:44382883-44382963 0.00026 30_[+2]_42 chr15:29967047-29967127 0.00026 31_[+2]_41 chr8:98748693-98748773 0.0003 51_[+2]_21 chr6:159384258-159384338 0.0003 64_[+2]_8 chr21:47580959-47581039 0.0003 8_[+2]_64 chr2:177405851-177405931 0.00034 44_[+2]_28 chr5:77447567-77447647 0.00036 72_[+2] chr12:117799028-11779910 0.00036 31_[+2]_41 chr7:99273104-99273184 0.00039 64_[+2]_8 chr17:66192722-66192802 0.00041 47_[+2]_25 chr15:40068417-40068497 0.00041 61_[+2]_11 chr1:35669083-35669163 0.00046 63_[+2]_9 chr1:145017677-145017757 0.00046 72_[+2] chr2:163605491-163605571 0.00051 6_[+2]_66 chr7:35879630-35879710 0.00051 67_[+2]_5 chr6:112094870-112094950 0.00053 62_[+2]_10 chr17:75352631-75352711 0.00064 30_[+2]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCCYYYCC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YCCYYYCC width=8 seqs=63 chr6:25451137-25451217 ( 73) CCCCTCCC 1 chr7:150676309-150676389 ( 21) CCCCTCCC 1 chr4:74326734-74326814 ( 30) CCCCTCCC 1 chr7:1546095-1546175 ( 70) CCCCTCCC 1 chr3:141747170-141747250 ( 65) CCCCTCCC 1 chr10:72314599-72314679 ( 61) CCCCTCCC 1 chr4:1768976-1769056 ( 58) CCCCTCCC 1 chr9:132372575-132372655 ( 6) CCCCCCCC 1 chr1:59887060-59887140 ( 72) TCCCTCCC 1 chr2:163605260-163605340 ( 70) TCCCTCCC 1 chr18:21594627-21594707 ( 66) TCCCTCCC 1 chr15:102033458-10203353 ( 6) TCCCTCCC 1 chr16:23847217-23847297 ( 46) TCCCTCCC 1 chr16:5348363-5348443 ( 72) TCCCTCCC 1 chr6:153539479-153539559 ( 73) TCCCTCCC 1 chr13:93231428-93231508 ( 69) TCCCTCCC 1 chr9:129638405-129638485 ( 72) TCCCCCCC 1 chr7:1709828-1709908 ( 14) TCCCCCCC 1 chr16:47159824-47159904 ( 73) CCCTTCCC 1 chr4:94370015-94370095 ( 72) CCCTTCCC 1 chr2:157505233-157505313 ( 68) CCCTTCCC 1 chr1:180054152-180054232 ( 5) CCCTTCCC 1 chr5:17431559-17431639 ( 69) CCCTTCCC 1 chr18:45456855-45456935 ( 32) CCCCGCCC 1 chr7:6703511-6703591 ( 30) CCCCGCCC 1 chr8:142483057-142483137 ( 70) CCCCGCCC 1 chr22:50746069-50746149 ( 43) CCCCGCCC 1 chr2:153480479-153480559 ( 69) TCCTTCCC 1 chr5:77743734-77743814 ( 28) TCCTTCCC 1 chr1:244096993-244097073 ( 71) TCCTCCCC 1 chr18:23883365-23883445 ( 66) CCCCCTCC 1 chr19:35759849-35759929 ( 28) TCCCCTCC 1 chr5:56545478-56545558 ( 70) TCCCCTCC 1 chr19:51406065-51406145 ( 42) TCCCCTCC 1 chr3:50654569-50654649 ( 61) TCCTGCCC 1 chr4:1580709-1580789 ( 54) CTCCCCCC 1 chr1:1052367-1052447 ( 26) CCCTCTCC 1 chr4:110797955-110798035 ( 67) TCCTTTCC 1 chr5:130614326-130614406 ( 65) TCCTTTCC 1 chr19:59096921-59097001 ( 65) TCCTTTCC 1 chr7:66931255-66931335 ( 69) TCCTTTCC 1 chr10:38133752-38133832 ( 67) TCCTTTCC 1 chr10:6682563-6682643 ( 47) TCCTCTCC 1 chr3:149687937-149688017 ( 60) CGCCTCCC 1 chr5:180527745-180527825 ( 73) CGCCCCCC 1 chr1:219755803-219755883 ( 42) CTCTCCCC 1 chr21:44382883-44382963 ( 31) CCCTGTCC 1 chr15:29967047-29967127 ( 32) CTCCGCCC 1 chr8:98748693-98748773 ( 52) TTCTCCCC 1 chr6:159384258-159384338 ( 65) CTCCTTCC 1 chr21:47580959-47581039 ( 9) CTCCTTCC 1 chr2:177405851-177405931 ( 45) TCCTGTCC 1 chr5:77447567-77447647 ( 73) TTCCTTCC 1 chr12:117799028-11779910 ( 32) CGCCGCCC 1 chr7:99273104-99273184 ( 65) TTCCCTCC 1 chr17:66192722-66192802 ( 48) TGCTCCCC 1 chr15:40068417-40068497 ( 62) TGCTCCCC 1 chr1:35669083-35669163 ( 64) CTCTCTCC 1 chr1:145017677-145017757 ( 73) CTCTCTCC 1 chr2:163605491-163605571 ( 7) TTCTTTCC 1 chr7:35879630-35879710 ( 68) TTCTTTCC 1 chr6:112094870-112094950 ( 63) TTCTCTCC 1 chr17:75352631-75352711 ( 31) TCCACCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCCYYYCC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1725 E= 5.4e-019 -1262 117 -1262 81 -1262 175 -135 -53 -1262 224 -1262 -1262 -417 139 -1262 52 -1262 65 -50 81 -1262 162 -1262 23 -1262 224 -1262 -1262 -1262 224 -1262 -1262 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCCYYYCC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 63 E= 5.4e-019 0.000000 0.476190 0.000000 0.523810 0.000000 0.714286 0.079365 0.206349 0.000000 1.000000 0.000000 0.000000 0.015873 0.555556 0.000000 0.428571 0.000000 0.333333 0.142857 0.523810 0.000000 0.650794 0.000000 0.349206 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCCYYYCC MEME-2 regular expression -------------------------------------------------------------------------------- [TC][CT]C[CT][TC][CT]CC -------------------------------------------------------------------------------- Time 8.84 secs. ******************************************************************************** ******************************************************************************** MOTIF GRAARGAA MEME-3 width = 8 sites = 51 llr = 401 E-value = 1.3e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif GRAARGAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :77a53a8 pos.-specific C :::::::: probability G a33:57:2 matrix T :::::::: bits 2.3 * 2.1 * 1.8 * * 1.6 * * * Relative 1.4 * * * Entropy 1.2 **** *** (11.4 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GAAAAGAA consensus GG GA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRAARGAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:32088488-32088568 24 1.60e-05 gaaggaaaag gaaaggaa AGAATTCTCA chr12:31650907-31650987 15 1.60e-05 agagaggaaa gaaaggaa aagaaaagaa chr2:177405851-177405931 12 1.60e-05 gagggaggga gaaaggaa ggaaggaagg chr10:16984902-16984982 15 1.60e-05 aaggggaaag gaaaggaa AAATGTACTT chr6:112094870-112094950 28 1.60e-05 TACAAAACAG GAAAGGAA AAAAAGATGA chr1:222362709-222362789 12 1.60e-05 agggaaggga GAAAGGAA AAAGaaagta chr16:61646160-61646240 11 3.86e-05 AAGGGGAAAA GAAAAGAA ATTAGCAAAA chr6:32353958-32354038 52 3.86e-05 TGTTTGGTTT GAAAAGAA GATTAGTtac chr6:134133728-134133808 17 3.86e-05 aaaaataaaa gaaaagaa agaaaTTAGG chr7:138087650-138087730 15 3.86e-05 gaggggaAAA GAAAAGAA GGGAAGAATT chr1:91415895-91415975 11 3.86e-05 gaaaagaaaa gaaaagaa aTAGTGCTAA chr10:73958120-73958200 44 4.99e-05 gggaagggaa ggaaggaa agaaaagAAA chr3:5781127-5781207 58 4.99e-05 TTCGCTTTTT GGAAGGAA GACAAAATCC chr1:221873490-221873570 47 4.99e-05 gaagagggag ggaaggaa agagggaggg chr3:165194297-165194377 59 4.99e-05 agagagggaa ggaaggaa gggagcgacg chr5:124969351-124969431 51 4.99e-05 aaaatgagcg ggaaggaa ggagaaagaa chr15:40068417-40068497 1 4.99e-05 . ggaaggaA TGGAGTAGAG chr5:56545478-56545558 24 6.59e-05 TCATTTCCTT GGAAAGAA ACTTGGAAAG chr17:44202486-44202566 1 6.59e-05 . ggaaagaa attgccacag chr12:92775786-92775866 5 7.73e-05 TGTA GAGAGGAA TTAATTATAT chr1:115702774-115702854 23 9.33e-05 AGCCCTCTGG GAGAAGAA AGTCTGTTCT chr1:168115521-168115601 17 9.33e-05 ggacagaaaa gagaagaa aaaaggagaa chr6:50603294-50603374 11 1.24e-04 gagggaaaga gggaggaa gagaaggagg chr2:157505233-157505313 53 1.24e-04 CATTTTTTTT GAAAGAAA ATGTTttccc chr6:6537867-6537947 25 1.24e-04 aagaaagaaa gaaagaaa TCTTGTTTTA chr7:25809361-25809441 11 1.24e-04 aagaaagaaa gaaagaaa gaaagaaaAG chr7:1709828-1709908 73 1.24e-04 GGCGAAGCTG GGGAGGAA chr12:121268227-12126830 73 1.78e-04 aaggggaggg gggaagaa chr18:27714136-27714216 2 1.78e-04 a gaAAAAAA AAAACTCAGA chr4:26780133-26780213 26 1.78e-04 caggtggtag gggaagaa ccagaaccga chr5:44888698-44888778 22 1.78e-04 TTATCTTATA GAAAAAAA TGAATTAATT chr7:124802766-124802846 16 1.78e-04 GTTCTGTAAT GAAAGGAG ATCAACTTAA chr4:12267350-12267430 32 1.78e-04 AATAACTTTG GAAAAAAA TCACTATGAT chr2:145058353-145058433 11 1.78e-04 GGGGTTAAAG GAAAAAAA ATAATAACTC chr10:38133752-38133832 3 1.78e-04 ca gaaaaaaa acagcaactg chr9:4339900-4339980 2 1.94e-04 A GAAAAGAG ACAGAAAGGT chr3:19316220-19316300 37 1.94e-04 GGATCAAAAT GAAAAGAG GATTAAAAAC chr15:81812987-81813067 41 1.94e-04 CACCTCCTTA GAAAAGAG ATGCATTTAT chr3:9770326-9770406 25 1.94e-04 ataatttttt gaaaagag gtcatggatg chr5:70962986-70963066 14 2.41e-04 tagttcatat ggaaaaaa taaaatgatc chr6:157791943-157792023 2 2.41e-04 g ggaaaaaa ttagaaatta chr1:220387084-220387164 8 2.68e-04 ggagaga gagAGAAA TAAATAAATA chr11:5140285-5140365 13 2.99e-04 ggggagggga gAGAAAAA TATAGTctta chr1:21141130-21141210 34 2.99e-04 CTTAAGTGGT GAGAAAAA TGTTACTCTT chr11:77489314-77489394 40 2.99e-04 TCAGGCTTTA GAGAAAAA CAATGTTCCT chr22:50746069-50746149 60 2.99e-04 CCCGACGAGG GAGAGGAG GGGAGGGCGG chr4:127265773-127265853 2 3.90e-04 g gggaagag aggggagggg chr10:70262813-70262893 71 3.90e-04 TTTTTTTAAA GAAAAAAG AA chr19:526019-526099 21 4.01e-04 TTTTCCCCTA GGAAGAAG CTGGAAGTCA chr12:120288308-12028838 20 4.29e-04 aaggggaagg gaagggaa agggaagggG chr2:80391669-80391749 18 4.92e-04 agaatactca ggagagaa ggtaggtatt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRAARGAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:32088488-32088568 1.6e-05 23_[+3]_49 chr12:31650907-31650987 1.6e-05 14_[+3]_58 chr2:177405851-177405931 1.6e-05 11_[+3]_61 chr10:16984902-16984982 1.6e-05 14_[+3]_58 chr6:112094870-112094950 1.6e-05 27_[+3]_45 chr1:222362709-222362789 1.6e-05 11_[+3]_61 chr16:61646160-61646240 3.9e-05 10_[+3]_62 chr6:32353958-32354038 3.9e-05 51_[+3]_21 chr6:134133728-134133808 3.9e-05 16_[+3]_56 chr7:138087650-138087730 3.9e-05 14_[+3]_58 chr1:91415895-91415975 3.9e-05 10_[+3]_62 chr10:73958120-73958200 5e-05 43_[+3]_29 chr3:5781127-5781207 5e-05 57_[+3]_15 chr1:221873490-221873570 5e-05 46_[+3]_26 chr3:165194297-165194377 5e-05 58_[+3]_14 chr5:124969351-124969431 5e-05 50_[+3]_22 chr15:40068417-40068497 5e-05 [+3]_72 chr5:56545478-56545558 6.6e-05 23_[+3]_49 chr17:44202486-44202566 6.6e-05 [+3]_72 chr12:92775786-92775866 7.7e-05 4_[+3]_68 chr1:115702774-115702854 9.3e-05 22_[+3]_50 chr1:168115521-168115601 9.3e-05 16_[+3]_56 chr6:50603294-50603374 0.00012 10_[+3]_62 chr2:157505233-157505313 0.00012 52_[+3]_20 chr6:6537867-6537947 0.00012 24_[+3]_48 chr7:25809361-25809441 0.00012 10_[+3]_62 chr7:1709828-1709908 0.00012 72_[+3] chr12:121268227-12126830 0.00018 72_[+3] chr18:27714136-27714216 0.00018 1_[+3]_71 chr4:26780133-26780213 0.00018 25_[+3]_47 chr5:44888698-44888778 0.00018 21_[+3]_51 chr7:124802766-124802846 0.00018 15_[+3]_57 chr4:12267350-12267430 0.00018 31_[+3]_41 chr2:145058353-145058433 0.00018 10_[+3]_62 chr10:38133752-38133832 0.00018 2_[+3]_70 chr9:4339900-4339980 0.00019 1_[+3]_71 chr3:19316220-19316300 0.00019 36_[+3]_36 chr15:81812987-81813067 0.00019 40_[+3]_32 chr3:9770326-9770406 0.00019 24_[+3]_48 chr5:70962986-70963066 0.00024 13_[+3]_59 chr6:157791943-157792023 0.00024 1_[+3]_71 chr1:220387084-220387164 0.00027 7_[+3]_65 chr11:5140285-5140365 0.0003 12_[+3]_60 chr1:21141130-21141210 0.0003 33_[+3]_39 chr11:77489314-77489394 0.0003 39_[+3]_33 chr22:50746069-50746149 0.0003 59_[+3]_13 chr4:127265773-127265853 0.00039 1_[+3]_71 chr10:70262813-70262893 0.00039 70_[+3]_2 chr19:526019-526099 0.0004 20_[+3]_52 chr12:120288308-12028838 0.00043 19_[+3]_53 chr2:80391669-80391749 0.00049 17_[+3]_55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRAARGAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GRAARGAA width=8 seqs=51 chr2:32088488-32088568 ( 24) GAAAGGAA 1 chr12:31650907-31650987 ( 15) GAAAGGAA 1 chr2:177405851-177405931 ( 12) GAAAGGAA 1 chr10:16984902-16984982 ( 15) GAAAGGAA 1 chr6:112094870-112094950 ( 28) GAAAGGAA 1 chr1:222362709-222362789 ( 12) GAAAGGAA 1 chr16:61646160-61646240 ( 11) GAAAAGAA 1 chr6:32353958-32354038 ( 52) GAAAAGAA 1 chr6:134133728-134133808 ( 17) GAAAAGAA 1 chr7:138087650-138087730 ( 15) GAAAAGAA 1 chr1:91415895-91415975 ( 11) GAAAAGAA 1 chr10:73958120-73958200 ( 44) GGAAGGAA 1 chr3:5781127-5781207 ( 58) GGAAGGAA 1 chr1:221873490-221873570 ( 47) GGAAGGAA 1 chr3:165194297-165194377 ( 59) GGAAGGAA 1 chr5:124969351-124969431 ( 51) GGAAGGAA 1 chr15:40068417-40068497 ( 1) GGAAGGAA 1 chr5:56545478-56545558 ( 24) GGAAAGAA 1 chr17:44202486-44202566 ( 1) GGAAAGAA 1 chr12:92775786-92775866 ( 5) GAGAGGAA 1 chr1:115702774-115702854 ( 23) GAGAAGAA 1 chr1:168115521-168115601 ( 17) GAGAAGAA 1 chr6:50603294-50603374 ( 11) GGGAGGAA 1 chr2:157505233-157505313 ( 53) GAAAGAAA 1 chr6:6537867-6537947 ( 25) GAAAGAAA 1 chr7:25809361-25809441 ( 11) GAAAGAAA 1 chr7:1709828-1709908 ( 73) GGGAGGAA 1 chr12:121268227-12126830 ( 73) GGGAAGAA 1 chr18:27714136-27714216 ( 2) GAAAAAAA 1 chr4:26780133-26780213 ( 26) GGGAAGAA 1 chr5:44888698-44888778 ( 22) GAAAAAAA 1 chr7:124802766-124802846 ( 16) GAAAGGAG 1 chr4:12267350-12267430 ( 32) GAAAAAAA 1 chr2:145058353-145058433 ( 11) GAAAAAAA 1 chr10:38133752-38133832 ( 3) GAAAAAAA 1 chr9:4339900-4339980 ( 2) GAAAAGAG 1 chr3:19316220-19316300 ( 37) GAAAAGAG 1 chr15:81812987-81813067 ( 41) GAAAAGAG 1 chr3:9770326-9770406 ( 25) GAAAAGAG 1 chr5:70962986-70963066 ( 14) GGAAAAAA 1 chr6:157791943-157792023 ( 2) GGAAAAAA 1 chr1:220387084-220387164 ( 8) GAGAGAAA 1 chr11:5140285-5140365 ( 13) GAGAAAAA 1 chr1:21141130-21141210 ( 34) GAGAAAAA 1 chr11:77489314-77489394 ( 40) GAGAAAAA 1 chr22:50746069-50746149 ( 60) GAGAGGAG 1 chr4:127265773-127265853 ( 2) GGGAAGAG 1 chr10:70262813-70262893 ( 71) GAAAAAAG 1 chr19:526019-526099 ( 21) GGAAGAAG 1 chr12:120288308-12028838 ( 20) GAAGGGAA 1 chr2:80391669-80391749 ( 18) GGAGAGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRAARGAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.594 E= 1.3e-007 -1232 -1232 230 -1232 122 -1232 72 -1232 138 -1232 33 -1232 175 -1232 -237 -1232 94 -1232 115 -1232 13 -1232 176 -1232 180 -1232 -1232 -1232 152 -1232 -20 -1232 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRAARGAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 51 E= 1.3e-007 0.000000 0.000000 1.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.745098 0.000000 0.254902 0.000000 0.960784 0.000000 0.039216 0.000000 0.549020 0.000000 0.450980 0.000000 0.313725 0.000000 0.686275 0.000000 1.000000 0.000000 0.000000 0.000000 0.823529 0.000000 0.176471 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRAARGAA MEME-3 regular expression -------------------------------------------------------------------------------- G[AG][AG]A[AG][GA]AA -------------------------------------------------------------------------------- Time 12.53 secs. ******************************************************************************** ******************************************************************************** MOTIF CSCGCGGS MEME-4 width = 8 sites = 21 llr = 200 E-value = 1.4e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CSCGCGGS MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::::1: pos.-specific C a5a:8:26 probability G :5:a2a64 matrix T :::::::: bits 2.3 ** * 2.1 * ** * 1.8 * ** * 1.6 * ** * Relative 1.4 ****** * Entropy 1.2 ****** * (13.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCCGCGGC consensus G G CG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCGCGGS MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr5:176559847-176559927 53 3.58e-06 AGGGCGGCTG CCCGCGGC ACCCGGGACG chr15:29967047-29967127 43 3.58e-06 tccgcccagt cccgcggc ctcctcgccc chr19:35759849-35759929 39 7.01e-06 CCCCTCCTGC CGCGCGGC GTGAGCGCCG chr12:117799028-11779910 40 7.01e-06 TCCGCCGCCC CGCGCGGC TGGAGGGCGC chr7:1709828-1709908 25 7.01e-06 cccccccggc cgcgcggc gaggggcggg chr18:45456855-45456935 69 1.37e-05 gcggcccggg cgcgcggg aggg chr13:23500598-23500678 18 1.37e-05 GCCGCTCAGC CGCGCGGG GGAGCCCGGG chr10:35104314-35104394 48 1.37e-05 GCCGGCTACC CGCGCGGG GCGGAGCGCA chr22:50746069-50746149 26 1.37e-05 GGGGCCGGAG CGCGCGGG AGCTGCCGGC chr13:100623495-10062357 34 1.75e-05 GGGGTAGCTG CCCGCGCC GGGGTGCGCG chr17:66192722-66192802 40 2.11e-05 CTGGGAGCTC CGCGCGCC TGCTCCCCTT chr16:23847217-23847297 32 2.45e-05 GCGGGGCTGG CCCGGGGC TCCGCCTCCC chr1:182992113-182992193 49 3.13e-05 CCCAGCGACT CCCGCGCG GGGAGCGGGT chr3:149687937-149688017 37 3.81e-05 CTTCGAGAAT cccggggg ccgggccggg chr9:132372575-132372655 61 4.12e-05 AGTCCGGGGT CGCGGGGG CGCCGAGACC chr3:50654569-50654649 47 4.63e-05 GCCGCCAGCT CCCGCGAC CGCCTCTCCT chr5:180527745-180527825 45 4.63e-05 CCGCGTGGGA CCCGCGAC TGGAAATCCG chr7:1546095-1546175 3 5.95e-05 CA CCCGGGCC CAGGCCAGAA chr7:6703511-6703591 58 5.95e-05 GAGCCTCCTG CCCGGGCC TGTGTCGCGG chr21:44073667-44073747 24 6.76e-05 GGAGGAGGAG CGCGCGAG CCGGAGTCGG chr18:21594627-21594707 30 7.77e-05 ccgcagccgg gccgcggc TCCTCCCTCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCGCGGS MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:176559847-176559927 3.6e-06 52_[+4]_20 chr15:29967047-29967127 3.6e-06 42_[+4]_30 chr19:35759849-35759929 7e-06 38_[+4]_34 chr12:117799028-11779910 7e-06 39_[+4]_33 chr7:1709828-1709908 7e-06 24_[+4]_48 chr18:45456855-45456935 1.4e-05 68_[+4]_4 chr13:23500598-23500678 1.4e-05 17_[+4]_55 chr10:35104314-35104394 1.4e-05 47_[+4]_25 chr22:50746069-50746149 1.4e-05 25_[+4]_47 chr13:100623495-10062357 1.7e-05 33_[+4]_39 chr17:66192722-66192802 2.1e-05 39_[+4]_33 chr16:23847217-23847297 2.4e-05 31_[+4]_41 chr1:182992113-182992193 3.1e-05 48_[+4]_24 chr3:149687937-149688017 3.8e-05 36_[+4]_36 chr9:132372575-132372655 4.1e-05 60_[+4]_12 chr3:50654569-50654649 4.6e-05 46_[+4]_26 chr5:180527745-180527825 4.6e-05 44_[+4]_28 chr7:1546095-1546175 6e-05 2_[+4]_70 chr7:6703511-6703591 6e-05 57_[+4]_15 chr21:44073667-44073747 6.8e-05 23_[+4]_49 chr18:21594627-21594707 7.8e-05 29_[+4]_43 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCGCGGS MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CSCGCGGS width=8 seqs=21 chr5:176559847-176559927 ( 53) CCCGCGGC 1 chr15:29967047-29967127 ( 43) CCCGCGGC 1 chr19:35759849-35759929 ( 39) CGCGCGGC 1 chr12:117799028-11779910 ( 40) CGCGCGGC 1 chr7:1709828-1709908 ( 25) CGCGCGGC 1 chr18:45456855-45456935 ( 69) CGCGCGGG 1 chr13:23500598-23500678 ( 18) CGCGCGGG 1 chr10:35104314-35104394 ( 48) CGCGCGGG 1 chr22:50746069-50746149 ( 26) CGCGCGGG 1 chr13:100623495-10062357 ( 34) CCCGCGCC 1 chr17:66192722-66192802 ( 40) CGCGCGCC 1 chr16:23847217-23847297 ( 32) CCCGGGGC 1 chr1:182992113-182992193 ( 49) CCCGCGCG 1 chr3:149687937-149688017 ( 37) CCCGGGGG 1 chr9:132372575-132372655 ( 61) CGCGGGGG 1 chr3:50654569-50654649 ( 47) CCCGCGAC 1 chr5:180527745-180527825 ( 45) CCCGCGAC 1 chr7:1546095-1546175 ( 3) CCCGGGCC 1 chr7:6703511-6703591 ( 58) CCCGGGCC 1 chr21:44073667-44073747 ( 24) CGCGCGAG 1 chr18:21594627-21594707 ( 30) GCCGCGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCGCGGS MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.2675 E= 1.4e-003 -1104 217 -209 -1104 -1104 130 123 -1104 -1104 224 -1104 -1104 -1104 -1104 230 -1104 -1104 184 23 -1104 -1104 -1104 230 -1104 -100 17 161 -1104 -1104 154 91 -1104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCGCGGS MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 1.4e-003 0.000000 0.952381 0.047619 0.000000 0.000000 0.523810 0.476190 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.761905 0.238095 0.000000 0.000000 0.000000 1.000000 0.000000 0.142857 0.238095 0.619048 0.000000 0.000000 0.619048 0.380952 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCGCGGS MEME-4 regular expression -------------------------------------------------------------------------------- C[CG]CG[CG]G[GC][CG] -------------------------------------------------------------------------------- Time 16.13 secs. ******************************************************************************** ******************************************************************************** MOTIF GGAGGGGG MEME-5 width = 8 sites = 2 llr = 25 E-value = 8.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGAGGGGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::a::::: pos.-specific C :::::::: probability G aa:aaaaa matrix T :::::::: bits 2.3 ** ***** 2.1 ** ***** 1.8 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.2 ******** (17.9 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGAGGGGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGGGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr5:124969351-124969431 17 4.06e-06 ggggagggga ggaggggg aagaaagaaa chr6:20965667-20965747 1 4.06e-06 . ggaggggG AACATTATAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGGGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:124969351-124969431 4.1e-06 16_[+5]_56 chr6:20965667-20965747 4.1e-06 [+5]_72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGGGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGAGGGGG width=8 seqs=2 chr5:124969351-124969431 ( 17) GGAGGGGG 1 chr6:20965667-20965747 ( 1) GGAGGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGGGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 8.1e+003 -765 -765 230 -765 -765 -765 230 -765 180 -765 -765 -765 -765 -765 230 -765 -765 -765 230 -765 -765 -765 230 -765 -765 -765 230 -765 -765 -765 230 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGGGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 8.1e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGGGGG MEME-5 regular expression -------------------------------------------------------------------------------- GGAGGGGG -------------------------------------------------------------------------------- Time 19.69 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:145017677-145017757 1.63e-01 80 chrX:10805546-10805626 8.23e-01 80 chr7:1709828-1709908 4.50e-09 13_[+2(2.37e-05)]_3_[+4(7.01e-06)]_\ 3_[+1(7.07e-06)]_1_[+4(3.48e-05)]_28 chr2:182471319-182471399 1.27e-01 80 chr11:58201437-58201517 9.59e-01 80 chr1:91415895-91415975 2.63e-01 [+3(3.86e-05)]_2_[+3(3.86e-05)]_62 chr22:50746069-50746149 1.02e-08 11_[+1(3.27e-05)]_6_[+4(1.37e-05)]_\ 9_[+2(4.15e-05)]_12_[+1(3.27e-05)]_1_[+1(7.07e-06)]_1 chr22:21257548-21257628 4.67e-01 80 chr1:1052367-1052447 2.89e-06 19_[+4(5.95e-05)]_25_[+5(1.42e-05)]_\ 20 chr2:203442149-203442229 9.88e-01 80 chr2:174778935-174779015 9.86e-01 80 chr19:15288837-15288917 2.61e-03 80 chr10:61505166-61505246 8.82e-01 80 chr4:165676765-165676845 8.88e-01 80 chr21:47580959-47581039 2.98e-03 80 chr1:235465690-235465770 9.48e-01 80 chr21:44073667-44073747 4.76e-05 23_[+4(6.76e-05)]_49 chr6:20965667-20965747 8.42e-04 [+5(4.06e-06)]_72 chr21:40050904-40050984 6.23e-01 80 chr6:157791943-157792023 1.89e-01 80 chr15:89615855-89615935 9.84e-01 80 chr4:1768976-1769056 7.30e-06 57_[+2(5.75e-06)]_15 chr1:244096993-244097073 9.81e-02 70_[+2(6.92e-05)]_2 chr8:100125140-100125220 9.96e-01 80 chr10:35104314-35104394 2.37e-05 21_[+1(2.13e-05)]_2_[+4(8.58e-05)]_\ 8_[+4(1.37e-05)]_25 chr1:203811773-203811853 7.91e-01 80 chr7:99273104-99273184 6.93e-03 80 chr1:159613324-159613404 8.60e-01 80 chr16:5348703-5348783 9.04e-01 80 chr18:19749215-19749295 9.44e-04 70_[+1(6.58e-05)]_2 chr10:38133752-38133832 1.12e-02 80 chr1:219755803-219755883 2.16e-01 80 chr10:13142091-13142171 1.35e-04 31_[+1(7.07e-06)]_41 chr1:222362709-222362789 1.32e-04 2_[+1(1.28e-05)]_1_[+3(1.60e-05)]_\ 61 chr12:40432618-40432698 1.00e+00 80 chr2:211343539-211343619 9.02e-01 80 chr2:145058353-145058433 1.96e-01 80 chr10:77432199-77432279 9.94e-01 80 chr2:120602893-120602973 9.40e-01 80 chr7:66891797-66891877 9.93e-01 80 chr7:65589367-65589447 9.90e-01 80 chr4:12267350-12267430 4.24e-01 80 chr10:120967243-12096732 2.38e-03 80 chr1:10125986-10126066 9.77e-01 80 chr1:173578164-173578244 6.24e-01 80 chr13:100623495-10062357 4.53e-05 33_[+4(1.75e-05)]_26_[+1(6.58e-05)]_\ 5 chr12:109049024-10904910 1.00e+00 80 chr2:65939169-65939249 9.86e-01 80 chr13:95977953-95978033 9.14e-01 80 chr3:9770326-9770406 3.86e-01 80 chr13:93231428-93231508 3.88e-02 68_[+2(1.80e-05)]_4 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chr1:216649151-216649231 3.87e-01 80 chr5:43579252-43579332 5.47e-01 80 chr2:163605491-163605571 2.94e-01 80 chr4:151579565-151579645 9.95e-01 80 chr10:71922303-71922383 1.93e-01 80 chr2:15821358-15821438 5.01e-01 80 chr7:28877726-28877806 8.87e-01 80 chr5:122770689-122770769 9.90e-01 80 chr4:18537726-18537806 9.76e-01 80 chr6:50603294-50603374 8.87e-03 80 chr17:66192722-66192802 1.26e-04 39_[+4(2.11e-05)]_33 chr5:34698060-34698140 9.85e-01 80 chr4:110797955-110798035 4.66e-01 80 chr10:6682563-6682643 5.66e-01 80 chr5:77447567-77447647 6.72e-01 80 chr21:44382883-44382963 1.63e-02 80 chr4:74326734-74326814 7.07e-02 11_[+2(2.37e-05)]_4_[+2(5.75e-06)]_\ 4_[+2(3.18e-05)]_37 chr20:48878512-48878592 9.95e-01 80 chr2:153480479-153480559 2.44e-03 24_[+1(5.46e-05)]_36_[+2(5.29e-05)]_\ 4 chr16:61646160-61646240 8.74e-02 5_[+3(3.86e-05)]_67 chr6:159364586-159364666 1.00e+00 80 chr9:132372575-132372655 7.14e-06 4_[+2(9.83e-06)]_48_[+4(4.12e-05)]_\ 12 chr4:127265773-127265853 4.74e-05 11_[+1(4.06e-06)]_61 chr11:16507563-16507643 9.59e-01 80 chr1:235575313-235575393 9.00e-01 80 chr7:150676309-150676389 8.10e-05 20_[+2(5.75e-06)]_52 chr1:59887060-59887140 7.93e-03 71_[+2(1.80e-05)]_1 chr10:73958120-73958200 3.71e-05 4_[+1(4.06e-06)]_1_[+1(1.28e-05)]_2_\ [+1(1.28e-05)]_2_[+1(1.28e-05)]_2_[+3(4.99e-05)]_1_[+3(3.86e-05)]_20 chr19:11723782-11723862 5.83e-01 80 chr3:50654569-50654649 5.38e-03 46_[+4(4.63e-05)]_26 chr18:45456855-45456935 5.39e-05 31_[+2(4.15e-05)]_5_[+4(5.95e-05)]_\ 16_[+4(1.37e-05)]_4 chr6:25451137-25451217 7.21e-02 72_[+2(5.75e-06)] chr8:37978033-37978113 9.51e-01 80 chr1:67772392-67772472 9.89e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n04.farnam.hpc.yale.internal ********************************************************************************