******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/HMBOX1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr4:26344132-26344212 1.0000 80 chr14:65563242-65563322 1.0000 80 chr15:39697231-39697311 1.0000 80 chr11:3892630-3892710 1.0000 80 chr1:32332116-32332196 1.0000 80 chr14:34409900-34409980 1.0000 80 chr2:84266221-84266301 1.0000 80 chr1:245305664-245305744 1.0000 80 chr17:1521194-1521274 1.0000 80 chrX:133540419-133540499 1.0000 80 chr12:71013422-71013502 1.0000 80 chr2:85639906-85639986 1.0000 80 chr3:151962111-151962191 1.0000 80 chr6:15252615-15252695 1.0000 80 chr1:10011225-10011305 1.0000 80 chr6:71108814-71108894 1.0000 80 chr7:105998957-105999037 1.0000 80 chr13:79967190-79967270 1.0000 80 chr2:24700245-24700325 1.0000 80 chr6:130536896-130536976 1.0000 80 chr9:98980197-98980277 1.0000 80 chr12:27021806-27021886 1.0000 80 chr8:61204628-61204708 1.0000 80 chr17:47416388-47416468 1.0000 80 chr14:75355691-75355771 1.0000 80 chr17:46346745-46346825 1.0000 80 chr7:158544593-158544673 1.0000 80 chr3:136409677-136409757 1.0000 80 chr16:81558060-81558140 1.0000 80 chr12:47559929-47560009 1.0000 80 chr9:19901784-19901864 1.0000 80 chr10:98374350-98374430 1.0000 80 chr4:103265163-103265243 1.0000 80 chr2:80589092-80589172 1.0000 80 chr3:185647633-185647713 1.0000 80 chr1:64163844-64163924 1.0000 80 chr17:45282147-45282227 1.0000 80 chr10:7861202-7861282 1.0000 80 chr5:81194426-81194506 1.0000 80 chr6:15359197-15359277 1.0000 80 chr12:120672602-12067268 1.0000 80 chr11:35270256-35270336 1.0000 80 chr12:69206848-69206928 1.0000 80 chr8:21794460-21794540 1.0000 80 chr10:13764909-13764989 1.0000 80 chr21:46631685-46631765 1.0000 80 chr13:49636572-49636652 1.0000 80 chr11:38178233-38178313 1.0000 80 chr11:16404344-16404424 1.0000 80 chr4:129689709-129689789 1.0000 80 chr7:156612802-156612882 1.0000 80 chr18:46588692-46588772 1.0000 80 chr10:99072865-99072945 1.0000 80 chr12:76468659-76468739 1.0000 80 chr5:118193631-118193711 1.0000 80 chr2:24167658-24167738 1.0000 80 chr12:864278-864358 1.0000 80 chr4:151865148-151865228 1.0000 80 chr3:113467881-113467961 1.0000 80 chr2:192856294-192856374 1.0000 80 chr19:13649836-13649916 1.0000 80 chr1:198625898-198625978 1.0000 80 chr15:39650775-39650855 1.0000 80 chr8:15424486-15424566 1.0000 80 chr22:40297071-40297151 1.0000 80 chr15:64524802-64524882 1.0000 80 chr3:108318807-108318887 1.0000 80 chr14:95652365-95652445 1.0000 80 chr14:68146962-68147042 1.0000 80 chr6:160139846-160139926 1.0000 80 chr1:89144207-89144287 1.0000 80 chr2:9767481-9767561 1.0000 80 chr15:73014603-73014683 1.0000 80 chr6:109702362-109702442 1.0000 80 chr12:133059973-13306005 1.0000 80 chr7:92635973-92636053 1.0000 80 chr12:111127773-11112785 1.0000 80 chr1:211483117-211483197 1.0000 80 chr3:182513341-182513421 1.0000 80 chr8:97906322-97906402 1.0000 80 chr14:20773488-20773568 1.0000 80 chr9:132532020-132532100 1.0000 80 chr11:17853589-17853669 1.0000 80 chr2:73678909-73678989 1.0000 80 chr9:38171404-38171484 1.0000 80 chr12:124286325-12428640 1.0000 80 chr1:24961824-24961904 1.0000 80 chr2:28126884-28126964 1.0000 80 chr3:182530136-182530216 1.0000 80 chr12:8763799-8763879 1.0000 80 chr2:113561450-113561530 1.0000 80 chr8:103768541-103768621 1.0000 80 chr12:120670621-12067070 1.0000 80 chr2:178772961-178773041 1.0000 80 chr11:57503348-57503428 1.0000 80 chr15:48884711-48884791 1.0000 80 chr2:42135044-42135124 1.0000 80 chr6:157219208-157219288 1.0000 80 chr7:30636134-30636214 1.0000 80 chr4:56732624-56732704 1.0000 80 chr17:31289338-31289418 1.0000 80 chr2:39719426-39719506 1.0000 80 chr2:62116845-62116925 1.0000 80 chr4:129503842-129503922 1.0000 80 chr4:174082256-174082336 1.0000 80 chrX:15913011-15913091 1.0000 80 chr20:60524233-60524313 1.0000 80 chr4:140093583-140093663 1.0000 80 chr7:135738500-135738580 1.0000 80 chr3:138405712-138405792 1.0000 80 chr7:154709095-154709175 1.0000 80 chr5:88575645-88575725 1.0000 80 chr2:202060875-202060955 1.0000 80 chrX:130043671-130043751 1.0000 80 chr1:28462261-28462341 1.0000 80 chr7:37384683-37384763 1.0000 80 chrX:117481328-117481408 1.0000 80 chr3:128597408-128597488 1.0000 80 chr9:94663568-94663648 1.0000 80 chr8:28728633-28728713 1.0000 80 chrX:107279734-107279814 1.0000 80 chr1:185991517-185991597 1.0000 80 chr18:11887510-11887590 1.0000 80 chr18:21207383-21207463 1.0000 80 chr1:101719765-101719845 1.0000 80 chr4:154125535-154125615 1.0000 80 chr2:32206275-32206355 1.0000 80 chr16:84171503-84171583 1.0000 80 chr2:65292408-65292488 1.0000 80 chr5:88351277-88351357 1.0000 80 chr22:46964098-46964178 1.0000 80 chr9:131795625-131795705 1.0000 80 chr10:112646135-11264621 1.0000 80 chr6:126425350-126425430 1.0000 80 chr22:29506014-29506094 1.0000 80 chr1:95718136-95718216 1.0000 80 chrX:65241430-65241510 1.0000 80 chr9:108059277-108059357 1.0000 80 chr11:9302321-9302401 1.0000 80 chrX:117463293-117463373 1.0000 80 chr4:79569926-79570006 1.0000 80 chr3:187165682-187165762 1.0000 80 chr3:33837788-33837868 1.0000 80 chr1:78197974-78198054 1.0000 80 chr3:99808720-99808800 1.0000 80 chr1:212411119-212411199 1.0000 80 chr19:4314105-4314185 1.0000 80 chr4:95456215-95456295 1.0000 80 chr5:39376589-39376669 1.0000 80 chr4:68567388-68567468 1.0000 80 chr2:152231044-152231124 1.0000 80 chr2:32170757-32170837 1.0000 80 chr4:160027087-160027167 1.0000 80 chr5:137812240-137812320 1.0000 80 chr10:111770018-11177009 1.0000 80 chr2:101923402-101923482 1.0000 80 chr2:69855577-69855657 1.0000 80 chr10:13765127-13765207 1.0000 80 chr3:39309178-39309258 1.0000 80 chr5:134489480-134489560 1.0000 80 chr16:81923793-81923873 1.0000 80 chr10:80798675-80798755 1.0000 80 chr13:42528482-42528562 1.0000 80 chr21:38232537-38232617 1.0000 80 chr2:32206067-32206147 1.0000 80 chr15:63800579-63800659 1.0000 80 chr3:197161022-197161102 1.0000 80 chr19:30458564-30458644 1.0000 80 chr8:15493386-15493466 1.0000 80 chr9:108061879-108061959 1.0000 80 chr4:138890605-138890685 1.0000 80 chr6:37201479-37201559 1.0000 80 chr9:37082358-37082438 1.0000 80 chr4:81082637-81082717 1.0000 80 chr3:70251285-70251365 1.0000 80 chr1:144893832-144893912 1.0000 80 chr6:88414978-88415058 1.0000 80 chr14:78009724-78009804 1.0000 80 chr5:138875730-138875810 1.0000 80 chr11:8981224-8981304 1.0000 80 chr15:58778454-58778534 1.0000 80 chr3:39388481-39388561 1.0000 80 chr2:102398025-102398105 1.0000 80 chr1:51435903-51435983 1.0000 80 chr10:71667408-71667488 1.0000 80 chr5:156962179-156962259 1.0000 80 chr16:69629736-69629816 1.0000 80 chr1:114323507-114323587 1.0000 80 chr4:48729819-48729899 1.0000 80 chr10:112533630-11253371 1.0000 80 chr1:32398258-32398338 1.0000 80 chr11:96071108-96071188 1.0000 80 chr12:11708811-11708891 1.0000 80 chr3:67050625-67050705 1.0000 80 chr3:3233787-3233867 1.0000 80 chr1:248008846-248008926 1.0000 80 chr10:124690746-12469082 1.0000 80 chr8:134870651-134870731 1.0000 80 chr15:66196882-66196962 1.0000 80 chr8:67013571-67013651 1.0000 80 chr22:36445573-36445653 1.0000 80 chr14:70110293-70110373 1.0000 80 chr6:138150843-138150923 1.0000 80 chr5:81692908-81692988 1.0000 80 chr18:19335100-19335180 1.0000 80 chr1:85038831-85038911 1.0000 80 chr3:183024845-183024925 1.0000 80 chr11:71833781-71833861 1.0000 80 chr3:171527260-171527340 1.0000 80 chr1:55325478-55325558 1.0000 80 chr6:108919530-108919610 1.0000 80 chr1:169865321-169865401 1.0000 80 chr4:16723340-16723420 1.0000 80 chr5:151105718-151105798 1.0000 80 chr12:119992571-11999265 1.0000 80 chr12:57771111-57771191 1.0000 80 chr21:38337240-38337320 1.0000 80 chr14:50770617-50770697 1.0000 80 chr11:63642182-63642262 1.0000 80 chr3:156997150-156997230 1.0000 80 chr12:104872365-10487244 1.0000 80 chr15:64858909-64858989 1.0000 80 chr1:168310480-168310560 1.0000 80 chr15:58636807-58636887 1.0000 80 chr6:34639718-34639798 1.0000 80 chr14:34386073-34386153 1.0000 80 chr4:123499113-123499193 1.0000 80 chr14:97047536-97047616 1.0000 80 chr1:145408986-145409066 1.0000 80 chr7:31022796-31022876 1.0000 80 chr16:75037558-75037638 1.0000 80 chr8:11656745-11656825 1.0000 80 chr15:93451318-93451398 1.0000 80 chr4:48254500-48254580 1.0000 80 chrX:109330379-109330459 1.0000 80 chr2:68833294-68833374 1.0000 80 chr5:77044128-77044208 1.0000 80 chr5:141489720-141489800 1.0000 80 chr21:34584554-34584634 1.0000 80 chr6:164497996-164498076 1.0000 80 chr11:118192292-11819237 1.0000 80 chr2:172011058-172011138 1.0000 80 chr4:140089111-140089191 1.0000 80 chr13:51250893-51250973 1.0000 80 chr2:223784706-223784786 1.0000 80 chr15:57377650-57377730 1.0000 80 chr20:42648325-42648405 1.0000 80 chr12:106663094-10666317 1.0000 80 chrX:135850796-135850876 1.0000 80 chrX:11426294-11426374 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_HMBOX1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/HMBOX1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.271 C 0.232 G 0.22 T 0.277 Background letter frequencies (from file dataset with add-one prior applied): A 0.271 C 0.232 G 0.22 T 0.277 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF RACTAGTY MEME-1 width = 8 sites = 250 llr = 1241 E-value = 4.2e-044 ******************************************************************************** -------------------------------------------------------------------------------- Motif RACTAGTY MEME-1 Description -------------------------------------------------------------------------------- Simplified A 56::9:11 pos.-specific C 1182::23 probability G 32::1a11 matrix T 11181:65 bits 2.2 2.0 * 1.7 * 1.5 * Relative 1.3 ** * Entropy 1.1 **** (7.2 bits) 0.9 **** 0.7 **** 0.4 ******* 0.2 ******** 0.0 -------- Multilevel AACTAGTT consensus GG CC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RACTAGTY MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:164497996-164498076 14 2.16e-05 AGCTTAGTGA AACTAGTT ATGCTAGTTC chr5:156962179-156962259 26 2.16e-05 aaggtcatat aactagtt aaagccaaga chr15:63800579-63800659 62 2.16e-05 ACAGGAAGCT AACTAGTT AGAAGATACA chr2:101923402-101923482 41 2.16e-05 agaatgagtc aactagtt gtgtgatgca chr3:128597408-128597488 31 2.16e-05 aatctggctc aactagtt ctgcaatccc chr12:124286325-12428640 29 2.16e-05 cttcttgcaa aactagtt aagatcacaa chr11:17853589-17853669 24 2.16e-05 caccatcatt aactagtt gtctgacctt chr13:49636572-49636652 47 2.16e-05 acatttctca aactagtt taaatgttag chr10:7861202-7861282 27 2.16e-05 AAACTACTAC AACTAGTT GTCACAGGCG chr1:64163844-64163924 31 2.16e-05 CATTTAAGCT AACTAGTT CCTAGGGTCA chr2:24700245-24700325 33 2.16e-05 GTTACCTCAT AACTAGTT CTGCCTCTCT chr5:141489720-141489800 31 5.72e-05 CTCCCAAAAT GACTAGTT AAGAATTTCA chr14:70110293-70110373 9 5.72e-05 ACTGAACT AACTAGTC AGAATTGGTG chr8:134870651-134870731 9 5.72e-05 ACGTTCCT AACTAGTC CCAGGTGATG chr8:15493386-15493466 49 5.72e-05 acctcttggt gactagtt cgcatgtgtg chr3:197161022-197161102 30 5.72e-05 CCCTCCACAT AACTAGTC TTCTCTCTCC chr4:79569926-79570006 22 5.72e-05 CTAGTTAGTG AACTAGTC ACTAGTAATT chrX:117463293-117463373 65 5.72e-05 TCACCCACTT GACTAGTT TCCCTCTG chr1:95718136-95718216 63 5.72e-05 tgtgcagaag gactagtt actatagata chr16:84171503-84171583 2 5.72e-05 T GACTAGTT ACTGTTTTGT chr8:61204628-61204708 41 5.72e-05 ATGCATTTGG GACTAGTT ATCTCTAAGC chr9:98980197-98980277 9 5.72e-05 ACCACACT GACTAGTT GTCCTAGCCT chr14:65563242-65563322 31 5.72e-05 CCCATTGGAG GACTAGTT TGCAGGCTTT chr2:223784706-223784786 19 8.94e-05 ggctactaag gactagtc agagaggaaa chr2:172011058-172011138 65 8.94e-05 aaggtcacac agctagtt aatagcaa chr14:34386073-34386153 65 8.94e-05 GCTGATAGGA GACTAGTC CACACTCA chr22:36445573-36445653 46 8.94e-05 CCAAGACAGC GACTAGTC TTGAAAGGAA chr1:248008846-248008926 25 8.94e-05 gctcactcat gactagtc agcatttgca chr12:11708811-11708891 57 8.94e-05 TTATCAAGGC AGCTAGTT CTGAGGGCTT chr21:38232537-38232617 28 8.94e-05 aaggtcagcc agctagtt agtggcgggg chr4:95456215-95456295 58 8.94e-05 gaggcaggga gactagtc aggcaagtat chr19:4314105-4314185 40 8.94e-05 GTAATCAGCC AGCTAGTT ATCTGTAATT chr1:212411119-212411199 6 8.94e-05 gaatg gactagtc aatccaatca chr2:202060875-202060955 16 8.94e-05 GACTAGTGAG AGCTAGTT AGTTTGAGTT chr14:20773488-20773568 15 8.94e-05 AAGTCCAAAA GACTAGTC TTACCTGTGG chr1:245305664-245305744 40 8.94e-05 ggctagtcac agctagtt acagctagtc chr4:48254500-48254580 21 1.36e-04 ttctgcaact aactagct gggtgatctt chr20:60524233-60524313 69 1.36e-04 CTATGTGAGA AGCTAGTC CATT chr8:103768541-103768621 54 1.36e-04 CAGAGCAAGC AACTAGCT TAGCACAGTC chr8:97906322-97906402 37 1.36e-04 aaccagtaca aactagct aacaagtaaa chr15:73014603-73014683 61 1.36e-04 ACTTGTAACT AACTAGCT CTCTTCCAAT chr3:108318807-108318887 14 1.36e-04 CACAAAGAAT GGCTAGTT ATTGCTGCTA chr19:13649836-13649916 43 1.36e-04 GATTACACCT AACTAGCT CCACTAACTA chr2:152231044-152231124 4 1.76e-04 TAC TACTAGTT AACTTACTCC chr22:29506014-29506094 17 1.76e-04 AAGTAATGTG TACTagtt gtttattgct chr9:94663568-94663648 72 1.76e-04 AGTGATAGTT TACTAGTT G chr5:88575645-88575725 52 1.76e-04 AGGAGAATGC AACTAGTG AACAGAACTC chr15:48884711-48884791 56 1.76e-04 GATTAAGTTC TACTAGTT GCTCAAGGCC chr3:182530136-182530216 58 1.76e-04 CCATAAAATT TACTAGTT TCACTCCTTA chr7:105998957-105999037 34 1.76e-04 ataataattc aactagtg gctcctgtcc chr4:123499113-123499193 17 2.75e-04 CTGTTACTAC ACCTAGTt agttccccta chr15:58636807-58636887 14 2.75e-04 ttgaattatg acctagtt agctgggcag chr1:85038831-85038911 41 2.75e-04 actaacctct aactagta attttccacc chr8:67013571-67013651 4 2.75e-04 att aactagcc ttgtgaccaa chr15:66196882-66196962 45 2.75e-04 GACTGTAGAC GACTAGCT GTTCTTGGTT chr1:144893832-144893912 41 2.75e-04 aaggttacac aactagcc ctcactagag chr16:81923793-81923873 28 2.75e-04 aatggctggt aaccagtt agtctccacc chr3:39309178-39309258 27 2.75e-04 TAGTCTGCTG GGCTAGTC TCCGGGTGAC chr4:154125535-154125615 19 2.75e-04 GGCTTGTGCT GACTAGCT GTTTATATTT chr4:140093583-140093663 72 2.75e-04 ctatcagatc aactagta t chrX:15913011-15913091 43 2.75e-04 ttaatcggtt aaccagtt aaccagttaa chr2:39719426-39719506 25 2.75e-04 GGTCTATGAT AACTAGTA TATATTTACA chr9:132532020-132532100 29 2.75e-04 ccttacccaa aactagta gctttttagg chr11:16404344-16404424 65 2.75e-04 aacctaggca gactagct aaagacca chr7:158544593-158544673 4 2.75e-04 GCT AACTAGTA CTCCACAGGA chr3:70251285-70251365 16 3.07e-04 ATTGGTGACT GACTAGTG GTCTATCTGG chr7:31022796-31022876 45 4.12e-04 ttagtttagc agctagct gttagtgtta chr10:124690746-12469082 29 4.12e-04 tcgtggttgt aaccagtc tcctctggac chr11:8981224-8981304 35 4.12e-04 ACAGAGCTAG ACCTAGTC AGAGGTTAAC chr5:138875730-138875810 71 4.12e-04 TTCTGGGTCT GACCAGTT AG chr9:108059277-108059357 5 4.12e-04 agag aaccagtc cttcatctct chr7:154709095-154709175 28 4.12e-04 AATGACTTGT AACCAGTC TCCAGACGGC chr12:864278-864358 18 4.12e-04 CATTCCGGTT GACTAGTA CATTCTAGGT chr18:46588692-46588772 71 4.12e-04 GCTGACTATG ACCTAGTC AG chr10:13764909-13764989 29 4.12e-04 tatgttggtt agctagct caccatgcta chr3:136409677-136409757 24 4.12e-04 tggtggattt gactagta gggcagtggc chr2:84266221-84266301 64 4.12e-04 GACTTCCTTA AACCAGTC TGGGAAAGC chr12:8763799-8763879 22 4.87e-04 GATCCTGACC TGCTAGTT AACTTTGTTG chr1:211483117-211483197 53 4.87e-04 CACTACCACC TGCTAGTT GTTTCAGACG chr7:156612802-156612882 38 4.87e-04 cgttaagctt aactaggt ggtgagtcca chr17:1521194-1521274 31 4.87e-04 TGGCCGGGAC TGCTAGTT AAGAGATGCT chr8:11656745-11656825 35 5.86e-04 tcaatctctt gaccagtc aaagctgtag chr6:34639718-34639798 28 5.86e-04 CTGCTTAACC CACTAGTT AGGCCTCATA chr1:55325478-55325558 59 5.86e-04 GATCCTCTTT CACTAGTT CCTCTCCTTT chr1:32398258-32398338 59 5.86e-04 GAAAGCAGAC AGCTAGTA TTGCTGTGCA chr7:135738500-135738580 36 5.86e-04 agggtaagag ggctagct agcatatttg chr12:47559929-47560009 58 5.86e-04 ctttgataag cactagtt aacaaaccca chr14:34409900-34409980 56 5.86e-04 TAGTCAACTG CACTAGTT AATTTGGGGA chr6:130536896-130536976 15 6.25e-04 ATACTTAGTA AACTGGTT AACCCCTTAG chr13:51250893-51250973 66 7.77e-04 AACTCTTACA GATTAGTT GATAGTC chr2:32170757-32170837 55 7.77e-04 ttggcaggcc atctagtt ccaagttgta chr10:112646135-11264621 53 7.77e-04 GAGGGTAGTG GATTAGTT GTTAAAGTGC chr9:131795625-131795705 71 7.77e-04 gagtaactga aattagtc tt chr22:46964098-46964178 36 7.77e-04 CACCCATGAT AACTAGGC CTCTCTCATG chr18:21207383-21207463 5 7.77e-04 CAAA GACTAGGT CATCCACTTT chr4:56732624-56732704 55 7.77e-04 TAAGTAACAT AACTAGGC TACATGCATG chr7:30636134-30636214 58 7.77e-04 TTAAGACAGG ATCTAGTT AACTAAAGTA chr2:24167658-24167738 67 7.77e-04 AGTGGAGCAG AATTAGTC TGTCCC chr13:79967190-79967270 60 7.77e-04 ACCAAGGAAC TACTAGCT TCCAGCTAAC chr2:85639906-85639986 37 7.77e-04 TTtggctcct tactagct gtgcaagtga chr12:71013422-71013502 37 7.77e-04 CAGCACTGAC TGCTAGTC ATGCAAGTGA chr4:16723340-16723420 70 8.89e-04 GTTGGGCACA GGCCAGTT AGT chr9:37082358-37082438 4 8.89e-04 ctt aaccagct gcataacctt chr13:42528482-42528562 44 8.89e-04 aaccacctct aaccagct ccacctcttg chr3:113467881-113467961 16 8.89e-04 TGAAAGAGAA AACCAGCT AGAAGCATTG chr9:108061879-108061959 30 9.92e-04 cagtcacacc aacttgtt ggttatcttt chr14:75355691-75355771 45 9.92e-04 ATGGGGCCTT AACTAGAC TAAAATGTGA chr4:140089111-140089191 59 1.21e-03 ccttcagtcc acctagtg ggtgactctg chr2:68833294-68833374 40 1.21e-03 TAAACCTCAA GTCTAGTT ATCTCTTACA chr1:168310480-168310560 15 1.21e-03 caccaacaga agttagtt tgtggttgct chr12:104872365-10487244 28 1.21e-03 TTATCTGTAA GTCTAGTT CAGGCTGTTC chr3:39388481-39388561 59 1.21e-03 tttgggagga agttagtt tatagtttat chr19:30458564-30458644 16 1.21e-03 CTGCAGCTGT AACCAGTG TTTTTCTGCT chr10:13765127-13765207 41 1.21e-03 catgctggtt agctaggt ctccaagctg chr11:9302321-9302401 26 1.21e-03 GCTTGTCAAC TCCTAGTT AGCCTGCTTG chr5:88351277-88351357 46 1.21e-03 CTTTAGAGCT TACCAGTT CACCACTCTC chr4:129503842-129503922 29 1.21e-03 cctggttatc agttaGTT GGGTTTATCT chr2:62116845-62116925 41 1.21e-03 AATCAGGTCT GTCTAGTT ACCACCGCCC chr9:38171404-38171484 6 1.21e-03 cctcc tactagcc tgtataacct chr12:111127773-11112785 53 1.21e-03 atcaccacaa acctagtg gcttaacaca chr1:89144207-89144287 11 1.21e-03 GTGTTGCTGG TCCTAGTT ACTTGTGTCC chr10:99072865-99072945 32 1.21e-03 CCCACTGTCT AACCAGTG GTTTATCTTT chr12:69206848-69206928 72 1.21e-03 agcttgggtt agttagtt a chr5:151105718-151105798 12 1.35e-03 ccaaagctga cgctagtt taacagacaa chr15:58778454-58778534 29 1.35e-03 ggtgtagggt gaccagct gtcctagtat chr2:65292408-65292488 34 1.35e-03 gcattgtttg gactagca aaaaagacta chr2:178772961-178773041 58 1.35e-03 AGCAGGCAAA ACCCAGTT TCCGGAGATA chr12:120670621-12067070 47 1.35e-03 GGTTCTCACT AACCAGCC AGCACCTTCC chr5:118193631-118193711 59 1.35e-03 tcagtggcct aaccagcc tgtgctcgtt chr17:47416388-47416468 71 1.35e-03 GGTGATACTT AACCAGCC AC chr21:34584554-34584634 33 1.44e-03 AGTCACCAGT GACTTGTT CAGCACTTAA chr11:63642182-63642262 14 1.44e-03 AGTGCAGCAG AACTTGTC GGCCCAGCTC chr6:108919530-108919610 19 1.44e-03 GAATTCTGCT GACTTGTT GCTACCCAGC chr10:111770018-11177009 34 1.44e-03 ACAGGTGGTT AGCTGGTT AATCTCTCCC chr4:174082256-174082336 33 1.44e-03 TTCTAGGCAT AGCTAGAT AATCAGGATC chr20:42648325-42648405 26 1.62e-03 AACTAAGCAT GGTTAGTT CTTCCTGTCA chr15:93451318-93451398 24 1.62e-03 GGCTTTTGCC AGTTAGTC TGAGTAGATA chr5:81692908-81692988 44 1.62e-03 GTTGTTACTC TCCTAGTC ATCTTTTTAT chr10:80798675-80798755 12 1.62e-03 gggaggtggg gcctagtg ggaggagatg chr11:57503348-57503428 32 1.62e-03 aagcaatgct ggttagtt gttttgtcct chr1:24961824-24961904 22 1.62e-03 GTGATAGTTG AGTTAGTC TTGGAACAAG chr22:40297071-40297151 36 1.62e-03 GGCTGACTAG GGTTAGTT TGGAGGAGGG chr14:78009724-78009804 53 1.75e-03 AGATGAAGAC AGCTAGCA AATAAAGGTA chr14:68146962-68147042 5 1.75e-03 GTAT GACCAGTA CAACTTGCCA chr11:118192292-11819237 61 1.97e-03 ATTTGAGTCC AGCTGGTC AGTCTTGGTT chr5:77044128-77044208 18 1.97e-03 atcctgagca aactaatt accacctact chr14:50770617-50770697 40 1.97e-03 ACGGCAGCCA GGCTGGTT ACATAAGTGA chr18:11887510-11887590 73 1.97e-03 GATAATCCCA AACTAGGG chrX:11426294-11426374 17 2.24e-03 ACCTCAGCCT GGTTAGTC TGTCAAGCAG chr18:19335100-19335180 47 2.24e-03 CCTCAGATGG AACTAGGA ACACAACATT chr12:57771111-57771191 19 2.43e-03 caatatagcc aactagag ttcactctga chr4:138890605-138890685 15 2.43e-03 caccagcaac tactggtt aatgactgac chr6:160139846-160139926 55 2.43e-03 cagaggtact aactggtg aaacagcatg chr21:46631685-46631765 34 2.43e-03 TAACTCATTA CCCTAGTT CCCTCTTTGC chr6:15359197-15359277 21 2.43e-03 CATGCCTGAC CACTAGTA TTCTAGGAGA chr3:151962111-151962191 16 2.43e-03 AAAATAATGT AACTAGAG AAGAGAGTTG chr15:57377650-57377730 36 2.79e-03 CCTTGTGAGA GATTAGTG AGTGGTAACT chr2:102398025-102398105 17 2.79e-03 ttttataata aacttgct ttggacataa chr3:187165682-187165762 12 2.79e-03 GCCCATCAGT AACTGGTA AACTGCTCTG chr6:126425350-126425430 7 2.79e-03 GGAGAT AACTTGCT ATGAATAGTC chr11:35270256-35270336 53 2.79e-03 ACCAGGGGAT TACTAGCG GTGCATGGAT chr12:106663094-10666317 69 3.14e-03 CAGTAGACTT ATCTAGTA TGCT chr14:97047536-97047616 19 3.14e-03 CTTAAGAGGT GTCTAGCT TGTAGGCTGC chr4:68567388-68567468 6 3.14e-03 agatc atccagtt tggtccctta chr1:185991517-185991597 52 3.14e-03 tgagcttact acctaggc tggtgggtat chrX:117481328-117481408 52 3.14e-03 ATGCTCGCTT GACTAGGA CTTGTATTTA chr1:28462261-28462341 70 3.14e-03 attgaccata acttagtc aca chr4:151865148-151865228 17 3.14e-03 agcaccaact tgccagtc atgtaagtaa chr9:19901784-19901864 27 3.14e-03 taagtctctt atctagcc aaagctgtgg chr4:26344132-26344212 42 3.14e-03 TGCGTGGTTA ACTTAGTC ATCTGACAAC chr7:92635973-92636053 68 3.34e-03 TAAGCAAGGC GACTGGTG AAGCT chr17:46346745-46346825 36 3.34e-03 TCTACACCAG GACTAGAG AATGTGGCAT chr6:71108814-71108894 42 3.34e-03 GTGAGTCTCC ACCCAGCT AACTATTCTA chrX:109330379-109330459 3 3.81e-03 AG GACTAGAA GATCCTAGCA chr1:145408986-145409066 45 3.81e-03 ccacaaaaat gaccagat aatcccctct chr3:183024845-183024925 32 3.81e-03 TGCGACAGGA GCCTGGTT AGTGAGTTGA chr1:51435903-51435983 61 3.81e-03 CCATCATGCA GCCTGGTT AGGAGCAAAG chr5:134489480-134489560 19 3.81e-03 CCCAACTCCG TCCTAGTG TTGAAGTTGA chr2:69855577-69855657 58 3.81e-03 tcacTGAAGA GACCAGAT AACCTACTTC chr4:160027087-160027167 59 3.81e-03 CACCAAACAA GACTAGAA GAGACAAAAC chr2:32206275-32206355 44 3.81e-03 AGTTAGAGTA AAGTAGTT AGAGCTCCCT chr6:157219208-157219288 51 3.81e-03 CCGCCCGAGC TACCAGTG CTctatgtct chr12:133059973-13306005 65 3.81e-03 accgggacct aaccagac ataaccca chr8:15424486-15424566 73 3.81e-03 GTGCAACAAA ttctagtc chr1:10011225-10011305 12 3.81e-03 TGCCTCGAAG GACTGGTA AGCCTTTGAC chr15:64858909-64858989 32 4.17e-03 GTTAACTACT TCCCAGTT TTACCTTGGG chr1:169865321-169865401 8 4.17e-03 aagcagg gcttagtc accctggaca chrX:107279734-107279814 43 4.17e-03 TCCCTACTAT CACTAGGT AAGCAATCCC chrX:130043671-130043751 36 4.17e-03 GCTAGAGCTC AGTTAGTA TCTATGCTGA chr3:138405712-138405792 14 4.17e-03 AAACTTACCA AGTTAGCC ATCTGTTAAA chr14:95652365-95652445 8 4.17e-03 GTAGGGA GGTTAGCT TCAGCAGCTG chr15:64524802-64524882 21 4.17e-03 ACATACTATG AGCTAGGA AGAAGAGTGA chr6:138150843-138150923 52 4.42e-03 CAAGGAGTTT AGCTAGAG AGGGTGGGGT chr2:113561450-113561530 9 4.42e-03 taggccag agctagag cccaggtcac chr12:76468659-76468739 55 4.42e-03 ACATTGTCAA GACTTGTG GTTACCAGAC chr17:45282147-45282227 55 4.42e-03 AACCCAAATT ACCCAGTA CTCTCTATGG chr16:75037558-75037638 46 4.95e-03 cgagtcagag tgctaggc tcatctcctg chr3:171527260-171527340 26 4.95e-03 AAATTGGCAG GGCTGGCT GATAAAGTTA chr3:67050625-67050705 31 4.95e-03 TAACCGTTTA GACTTGCC TAGGGTAGGT chr7:37384683-37384763 64 4.95e-03 CCTGCTGAGA AGCTAATC AGTGGTAAC chr3:182513341-182513421 73 4.95e-03 TTGCTCACCT CACTGGTT chr4:129689709-129689789 53 4.95e-03 CATCTCTTTT AACTAACT CTCTGAAGTT chr11:38178233-38178313 14 4.95e-03 tgccattttc aacctgtc taaaatgagg chr12:27021806-27021886 33 5.25e-03 tcaatctctt gtccagtc agagctgcag chr3:3233787-3233867 62 5.71e-03 caccagcagt caccagct ctactgcgtg chr1:114323507-114323587 37 5.71e-03 ACTTACATGA AATTAGAC CTCTAGCTTT chr12:119992571-11999265 59 6.46e-03 accagacact gactaact gatcctcccc chr11:71833781-71833861 50 6.46e-03 tcctggtcat aggtagtt aagagataac chr10:112533630-11253371 65 6.46e-03 ACTCATGTTT AACTAACC CAAACTCA chr10:71667408-71667488 25 6.46e-03 CCCCCACAAT AACTAACC CACTCTCACA chr5:81194426-81194506 10 6.46e-03 ctctcctaa tcttagtt cccctttctg chr4:103265163-103265243 19 6.46e-03 GGCAACTGTT AACCAGGG TGGCATGTGA chr6:88414978-88415058 46 6.88e-03 ATATCTGGTA AACTTGAT AGTTTAGTCA chr3:33837788-33837868 36 6.88e-03 CTTCCCAATG GGTCAGTC CTGTCAACCA chr2:192856294-192856374 40 6.88e-03 CAATGTTTAA ACTCAGTT CCCTCTAATC chr6:15252615-15252695 48 6.88e-03 CCGCATGCTA AACTGGAC TCCCTGTCTG chrX:135850796-135850876 23 7.50e-03 ccGTTACAAC TACTGGTA ATTGTAGTGG chr4:81082637-81082717 33 7.50e-03 CAGGACTGAC CACCAGCC TCTCACGGAG chr8:21794460-21794540 22 7.50e-03 TGGTGTTACA TACTGGCC TTAGCAAGAT chr10:98374350-98374430 35 7.50e-03 GTGGAACAGA CCCTAGTA GGGAAAGCCA chr4:48729819-48729899 48 8.29e-03 ctctaggcag ttctagcc ttccatgtgg chr3:99808720-99808800 13 8.29e-03 gtcttccgtt tcctaggc tgtgaactgt chr2:42135044-42135124 28 8.29e-03 GTCAAAGTTA AACTTGCA ATAAAAGGCA chr2:73678909-73678989 50 8.70e-03 TAATATTTCT TACCAGCA AGAGTTGCCA chr12:120672602-12067268 33 8.70e-03 CACAGGAGAC ACTCAGTC AATAGATCCA chr1:32332116-32332196 35 8.70e-03 ctacgacttt gactggac aagagactca chr11:3892630-3892710 32 8.70e-03 TCAGAGGGGA AGTCAGCT GCTCTAGTAG chr15:39650775-39650855 60 9.40e-03 TGATTTGTGC TGTTAGTG TTGCAGTCTG chr1:198625898-198625978 39 9.40e-03 AGCTCAAGCA GGTTGGTT ATGTTCTGCC chr3:185647633-185647713 62 9.40e-03 GTCATCCCCT TCCTTGTT TTGACTCCCC chr2:80589092-80589172 65 9.40e-03 ttcacttggt aattaggg tgaccatc chr3:156997150-156997230 12 1.02e-02 gtgcatgggt gacttgca ggttgttaat chr21:38337240-38337320 67 1.02e-02 gtctgggtag tgtcagtt atgtgg chr1:101719765-101719845 11 1.02e-02 cttagagatt aacctgcc caactgtctc chr16:81558060-81558140 7 1.02e-02 gtaacg tgttagcc acaacctact chr11:96071108-96071188 39 1.16e-02 ggatgtaggc tccttgtc tgatctactt chr6:37201479-37201559 65 1.16e-02 ttaagtcgct aactaacg aagttact chr2:28126884-28126964 39 1.16e-02 ccaagacagc gactaagt gactaacggg chr6:109702362-109702442 11 1.26e-02 GGTTTTAAAC CTCTAGTG TTTCTCCCGC chr15:39697231-39697311 28 1.33e-02 TTTAGCCTGA GGCTGGAC CACATATCTT chr2:32206067-32206147 71 1.45e-02 ACCTTGAATA ACCTAATG TC chr17:31289338-31289418 51 1.45e-02 accaagagaa gactaagc ttccactgtt chr8:28728633-28728713 16 1.55e-02 ACCGGTAGTA AGTTAGGA GTCAGCAAAG chr16:69629736-69629816 17 1.76e-02 atactttgac agttaatc tgataatcca chrX:65241430-65241510 68 1.76e-02 TATTCTCGGG CCCCAGCC ATCTT chrX:133540419-133540499 17 1.76e-02 cagatgttct gtccagat atcctttcta chr5:137812240-137812320 46 1.85e-02 CATCTCCTGT GGGCAGTT CCTGATGGGT chr2:9767481-9767561 32 1.85e-02 GAAAACCCTA TGTTAGCA CGCATGTTCA chr5:39376589-39376669 16 2.33e-02 GTAAATGGTT AAGTTGTC TCCGTAACCC chr1:78197974-78198054 22 2.48e-02 acatcctatc aatcaatc atcctcctaa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RACTAGTY MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:164497996-164498076 2.2e-05 13_[+1]_59 chr5:156962179-156962259 2.2e-05 25_[+1]_47 chr15:63800579-63800659 2.2e-05 61_[+1]_11 chr2:101923402-101923482 2.2e-05 40_[+1]_32 chr3:128597408-128597488 2.2e-05 30_[+1]_42 chr12:124286325-12428640 2.2e-05 28_[+1]_44 chr11:17853589-17853669 2.2e-05 23_[+1]_49 chr13:49636572-49636652 2.2e-05 46_[+1]_26 chr10:7861202-7861282 2.2e-05 26_[+1]_46 chr1:64163844-64163924 2.2e-05 30_[+1]_42 chr2:24700245-24700325 2.2e-05 32_[+1]_40 chr5:141489720-141489800 5.7e-05 30_[+1]_42 chr14:70110293-70110373 5.7e-05 8_[+1]_64 chr8:134870651-134870731 5.7e-05 8_[+1]_64 chr8:15493386-15493466 5.7e-05 48_[+1]_24 chr3:197161022-197161102 5.7e-05 29_[+1]_43 chr4:79569926-79570006 5.7e-05 21_[+1]_51 chrX:117463293-117463373 5.7e-05 64_[+1]_8 chr1:95718136-95718216 5.7e-05 62_[+1]_10 chr16:84171503-84171583 5.7e-05 1_[+1]_71 chr8:61204628-61204708 5.7e-05 40_[+1]_32 chr9:98980197-98980277 5.7e-05 8_[+1]_64 chr14:65563242-65563322 5.7e-05 30_[+1]_42 chr2:223784706-223784786 8.9e-05 18_[+1]_54 chr2:172011058-172011138 8.9e-05 64_[+1]_8 chr14:34386073-34386153 8.9e-05 64_[+1]_8 chr22:36445573-36445653 8.9e-05 45_[+1]_27 chr1:248008846-248008926 8.9e-05 24_[+1]_48 chr12:11708811-11708891 8.9e-05 56_[+1]_16 chr21:38232537-38232617 8.9e-05 27_[+1]_45 chr4:95456215-95456295 8.9e-05 57_[+1]_15 chr19:4314105-4314185 8.9e-05 39_[+1]_33 chr1:212411119-212411199 8.9e-05 5_[+1]_67 chr2:202060875-202060955 8.9e-05 15_[+1]_57 chr14:20773488-20773568 8.9e-05 14_[+1]_58 chr1:245305664-245305744 8.9e-05 39_[+1]_33 chr4:48254500-48254580 0.00014 20_[+1]_52 chr20:60524233-60524313 0.00014 68_[+1]_4 chr8:103768541-103768621 0.00014 53_[+1]_19 chr8:97906322-97906402 0.00014 36_[+1]_36 chr15:73014603-73014683 0.00014 60_[+1]_12 chr3:108318807-108318887 0.00014 13_[+1]_59 chr19:13649836-13649916 0.00014 42_[+1]_30 chr2:152231044-152231124 0.00018 3_[+1]_69 chr22:29506014-29506094 0.00018 16_[+1]_56 chr9:94663568-94663648 0.00018 71_[+1]_1 chr5:88575645-88575725 0.00018 51_[+1]_21 chr15:48884711-48884791 0.00018 55_[+1]_17 chr3:182530136-182530216 0.00018 57_[+1]_15 chr7:105998957-105999037 0.00018 33_[+1]_39 chr4:123499113-123499193 0.00028 16_[+1]_56 chr15:58636807-58636887 0.00028 13_[+1]_59 chr1:85038831-85038911 0.00028 40_[+1]_32 chr8:67013571-67013651 0.00028 3_[+1]_69 chr15:66196882-66196962 0.00028 44_[+1]_28 chr1:144893832-144893912 0.00028 40_[+1]_32 chr16:81923793-81923873 0.00028 27_[+1]_45 chr3:39309178-39309258 0.00028 26_[+1]_46 chr4:154125535-154125615 0.00028 18_[+1]_54 chr4:140093583-140093663 0.00028 71_[+1]_1 chrX:15913011-15913091 0.00028 42_[+1]_30 chr2:39719426-39719506 0.00028 24_[+1]_48 chr9:132532020-132532100 0.00028 28_[+1]_44 chr11:16404344-16404424 0.00028 64_[+1]_8 chr7:158544593-158544673 0.00028 3_[+1]_69 chr3:70251285-70251365 0.00031 15_[+1]_57 chr7:31022796-31022876 0.00041 44_[+1]_28 chr10:124690746-12469082 0.00041 28_[+1]_44 chr11:8981224-8981304 0.00041 34_[+1]_38 chr5:138875730-138875810 0.00041 70_[+1]_2 chr9:108059277-108059357 0.00041 4_[+1]_68 chr7:154709095-154709175 0.00041 27_[+1]_45 chr12:864278-864358 0.00041 17_[+1]_55 chr18:46588692-46588772 0.00041 70_[+1]_2 chr10:13764909-13764989 0.00041 28_[+1]_44 chr3:136409677-136409757 0.00041 23_[+1]_49 chr2:84266221-84266301 0.00041 63_[+1]_9 chr12:8763799-8763879 0.00049 21_[+1]_51 chr1:211483117-211483197 0.00049 52_[+1]_20 chr7:156612802-156612882 0.00049 37_[+1]_35 chr17:1521194-1521274 0.00049 30_[+1]_42 chr8:11656745-11656825 0.00059 34_[+1]_38 chr6:34639718-34639798 0.00059 27_[+1]_45 chr1:55325478-55325558 0.00059 58_[+1]_14 chr1:32398258-32398338 0.00059 58_[+1]_14 chr7:135738500-135738580 0.00059 35_[+1]_37 chr12:47559929-47560009 0.00059 57_[+1]_15 chr14:34409900-34409980 0.00059 55_[+1]_17 chr6:130536896-130536976 0.00062 14_[+1]_58 chr13:51250893-51250973 0.00078 65_[+1]_7 chr2:32170757-32170837 0.00078 54_[+1]_18 chr10:112646135-11264621 0.00078 52_[+1]_20 chr9:131795625-131795705 0.00078 70_[+1]_2 chr22:46964098-46964178 0.00078 35_[+1]_37 chr18:21207383-21207463 0.00078 4_[+1]_68 chr4:56732624-56732704 0.00078 54_[+1]_18 chr7:30636134-30636214 0.00078 57_[+1]_15 chr2:24167658-24167738 0.00078 66_[+1]_6 chr13:79967190-79967270 0.00078 59_[+1]_13 chr2:85639906-85639986 0.00078 36_[+1]_36 chr12:71013422-71013502 0.00078 36_[+1]_36 chr4:16723340-16723420 0.00089 69_[+1]_3 chr9:37082358-37082438 0.00089 3_[+1]_69 chr13:42528482-42528562 0.00089 43_[+1]_29 chr3:113467881-113467961 0.00089 15_[+1]_57 chr9:108061879-108061959 0.00099 29_[+1]_43 chr14:75355691-75355771 0.00099 44_[+1]_28 chr4:140089111-140089191 0.0012 58_[+1]_14 chr2:68833294-68833374 0.0012 39_[+1]_33 chr1:168310480-168310560 0.0012 14_[+1]_58 chr12:104872365-10487244 0.0012 27_[+1]_45 chr3:39388481-39388561 0.0012 58_[+1]_14 chr19:30458564-30458644 0.0012 15_[+1]_57 chr10:13765127-13765207 0.0012 40_[+1]_32 chr11:9302321-9302401 0.0012 25_[+1]_47 chr5:88351277-88351357 0.0012 45_[+1]_27 chr4:129503842-129503922 0.0012 28_[+1]_44 chr2:62116845-62116925 0.0012 40_[+1]_32 chr9:38171404-38171484 0.0012 5_[+1]_67 chr12:111127773-11112785 0.0012 52_[+1]_20 chr1:89144207-89144287 0.0012 10_[+1]_62 chr10:99072865-99072945 0.0012 31_[+1]_41 chr12:69206848-69206928 0.0012 71_[+1]_1 chr5:151105718-151105798 0.0013 11_[+1]_61 chr15:58778454-58778534 0.0013 28_[+1]_44 chr2:65292408-65292488 0.0013 33_[+1]_39 chr2:178772961-178773041 0.0013 57_[+1]_15 chr12:120670621-12067070 0.0013 46_[+1]_26 chr5:118193631-118193711 0.0013 58_[+1]_14 chr17:47416388-47416468 0.0013 70_[+1]_2 chr21:34584554-34584634 0.0014 32_[+1]_40 chr11:63642182-63642262 0.0014 13_[+1]_59 chr6:108919530-108919610 0.0014 18_[+1]_54 chr10:111770018-11177009 0.0014 33_[+1]_39 chr4:174082256-174082336 0.0014 32_[+1]_40 chr20:42648325-42648405 0.0016 25_[+1]_47 chr15:93451318-93451398 0.0016 23_[+1]_49 chr5:81692908-81692988 0.0016 43_[+1]_29 chr10:80798675-80798755 0.0016 11_[+1]_61 chr11:57503348-57503428 0.0016 31_[+1]_41 chr1:24961824-24961904 0.0016 21_[+1]_51 chr22:40297071-40297151 0.0016 35_[+1]_37 chr14:78009724-78009804 0.0017 52_[+1]_20 chr14:68146962-68147042 0.0017 4_[+1]_68 chr11:118192292-11819237 0.002 60_[+1]_12 chr5:77044128-77044208 0.002 17_[+1]_55 chr14:50770617-50770697 0.002 39_[+1]_33 chr18:11887510-11887590 0.002 72_[+1] chrX:11426294-11426374 0.0022 16_[+1]_56 chr18:19335100-19335180 0.0022 46_[+1]_26 chr12:57771111-57771191 0.0024 18_[+1]_54 chr4:138890605-138890685 0.0024 14_[+1]_58 chr6:160139846-160139926 0.0024 54_[+1]_18 chr21:46631685-46631765 0.0024 33_[+1]_39 chr6:15359197-15359277 0.0024 20_[+1]_52 chr3:151962111-151962191 0.0024 15_[+1]_57 chr15:57377650-57377730 0.0028 35_[+1]_37 chr2:102398025-102398105 0.0028 16_[+1]_56 chr3:187165682-187165762 0.0028 11_[+1]_61 chr6:126425350-126425430 0.0028 6_[+1]_66 chr11:35270256-35270336 0.0028 52_[+1]_20 chr12:106663094-10666317 0.0031 68_[+1]_4 chr14:97047536-97047616 0.0031 18_[+1]_54 chr4:68567388-68567468 0.0031 5_[+1]_67 chr1:185991517-185991597 0.0031 51_[+1]_21 chrX:117481328-117481408 0.0031 51_[+1]_21 chr1:28462261-28462341 0.0031 69_[+1]_3 chr4:151865148-151865228 0.0031 16_[+1]_56 chr9:19901784-19901864 0.0031 26_[+1]_46 chr4:26344132-26344212 0.0031 41_[+1]_31 chr7:92635973-92636053 0.0033 67_[+1]_5 chr17:46346745-46346825 0.0033 35_[+1]_37 chr6:71108814-71108894 0.0033 41_[+1]_31 chrX:109330379-109330459 0.0038 2_[+1]_70 chr1:145408986-145409066 0.0038 44_[+1]_28 chr3:183024845-183024925 0.0038 31_[+1]_41 chr1:51435903-51435983 0.0038 60_[+1]_12 chr5:134489480-134489560 0.0038 18_[+1]_54 chr2:69855577-69855657 0.0038 57_[+1]_15 chr4:160027087-160027167 0.0038 58_[+1]_14 chr2:32206275-32206355 0.0038 43_[+1]_29 chr6:157219208-157219288 0.0038 50_[+1]_22 chr12:133059973-13306005 0.0038 64_[+1]_8 chr8:15424486-15424566 0.0038 72_[+1] chr1:10011225-10011305 0.0038 11_[+1]_61 chr15:64858909-64858989 0.0042 31_[+1]_41 chr1:169865321-169865401 0.0042 7_[+1]_65 chrX:107279734-107279814 0.0042 42_[+1]_30 chrX:130043671-130043751 0.0042 35_[+1]_37 chr3:138405712-138405792 0.0042 13_[+1]_59 chr14:95652365-95652445 0.0042 7_[+1]_65 chr15:64524802-64524882 0.0042 20_[+1]_52 chr6:138150843-138150923 0.0044 51_[+1]_21 chr2:113561450-113561530 0.0044 8_[+1]_64 chr12:76468659-76468739 0.0044 54_[+1]_18 chr17:45282147-45282227 0.0044 54_[+1]_18 chr16:75037558-75037638 0.005 45_[+1]_27 chr3:171527260-171527340 0.005 25_[+1]_47 chr3:67050625-67050705 0.005 30_[+1]_42 chr7:37384683-37384763 0.005 63_[+1]_9 chr3:182513341-182513421 0.005 72_[+1] chr4:129689709-129689789 0.005 52_[+1]_20 chr11:38178233-38178313 0.005 13_[+1]_59 chr12:27021806-27021886 0.0053 32_[+1]_40 chr3:3233787-3233867 0.0057 61_[+1]_11 chr1:114323507-114323587 0.0057 36_[+1]_36 chr12:119992571-11999265 0.0065 58_[+1]_14 chr11:71833781-71833861 0.0065 49_[+1]_23 chr10:112533630-11253371 0.0065 64_[+1]_8 chr10:71667408-71667488 0.0065 24_[+1]_48 chr5:81194426-81194506 0.0065 9_[+1]_63 chr4:103265163-103265243 0.0065 18_[+1]_54 chr6:88414978-88415058 0.0069 45_[+1]_27 chr3:33837788-33837868 0.0069 35_[+1]_37 chr2:192856294-192856374 0.0069 39_[+1]_33 chr6:15252615-15252695 0.0069 47_[+1]_25 chrX:135850796-135850876 0.0075 22_[+1]_50 chr4:81082637-81082717 0.0075 32_[+1]_40 chr8:21794460-21794540 0.0075 21_[+1]_51 chr10:98374350-98374430 0.0075 34_[+1]_38 chr4:48729819-48729899 0.0083 47_[+1]_25 chr3:99808720-99808800 0.0083 12_[+1]_60 chr2:42135044-42135124 0.0083 27_[+1]_45 chr2:73678909-73678989 0.0087 49_[+1]_23 chr12:120672602-12067268 0.0087 32_[+1]_40 chr1:32332116-32332196 0.0087 34_[+1]_38 chr11:3892630-3892710 0.0087 31_[+1]_41 chr15:39650775-39650855 0.0094 59_[+1]_13 chr1:198625898-198625978 0.0094 38_[+1]_34 chr3:185647633-185647713 0.0094 61_[+1]_11 chr2:80589092-80589172 0.0094 64_[+1]_8 chr3:156997150-156997230 0.01 11_[+1]_61 chr21:38337240-38337320 0.01 66_[+1]_6 chr1:101719765-101719845 0.01 10_[+1]_62 chr16:81558060-81558140 0.01 6_[+1]_66 chr11:96071108-96071188 0.012 38_[+1]_34 chr6:37201479-37201559 0.012 64_[+1]_8 chr2:28126884-28126964 0.012 38_[+1]_34 chr6:109702362-109702442 0.013 10_[+1]_62 chr15:39697231-39697311 0.013 27_[+1]_45 chr2:32206067-32206147 0.015 70_[+1]_2 chr17:31289338-31289418 0.015 50_[+1]_22 chr8:28728633-28728713 0.016 15_[+1]_57 chr16:69629736-69629816 0.018 16_[+1]_56 chrX:65241430-65241510 0.018 67_[+1]_5 chrX:133540419-133540499 0.018 16_[+1]_56 chr5:137812240-137812320 0.018 45_[+1]_27 chr2:9767481-9767561 0.018 31_[+1]_41 chr5:39376589-39376669 0.023 15_[+1]_57 chr1:78197974-78198054 0.025 21_[+1]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RACTAGTY MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RACTAGTY width=8 seqs=250 chr6:164497996-164498076 ( 14) AACTAGTT 1 chr5:156962179-156962259 ( 26) AACTAGTT 1 chr15:63800579-63800659 ( 62) AACTAGTT 1 chr2:101923402-101923482 ( 41) AACTAGTT 1 chr3:128597408-128597488 ( 31) AACTAGTT 1 chr12:124286325-12428640 ( 29) AACTAGTT 1 chr11:17853589-17853669 ( 24) AACTAGTT 1 chr13:49636572-49636652 ( 47) AACTAGTT 1 chr10:7861202-7861282 ( 27) AACTAGTT 1 chr1:64163844-64163924 ( 31) AACTAGTT 1 chr2:24700245-24700325 ( 33) AACTAGTT 1 chr5:141489720-141489800 ( 31) GACTAGTT 1 chr14:70110293-70110373 ( 9) AACTAGTC 1 chr8:134870651-134870731 ( 9) AACTAGTC 1 chr8:15493386-15493466 ( 49) GACTAGTT 1 chr3:197161022-197161102 ( 30) AACTAGTC 1 chr4:79569926-79570006 ( 22) AACTAGTC 1 chrX:117463293-117463373 ( 65) GACTAGTT 1 chr1:95718136-95718216 ( 63) GACTAGTT 1 chr16:84171503-84171583 ( 2) GACTAGTT 1 chr8:61204628-61204708 ( 41) GACTAGTT 1 chr9:98980197-98980277 ( 9) GACTAGTT 1 chr14:65563242-65563322 ( 31) GACTAGTT 1 chr2:223784706-223784786 ( 19) GACTAGTC 1 chr2:172011058-172011138 ( 65) AGCTAGTT 1 chr14:34386073-34386153 ( 65) GACTAGTC 1 chr22:36445573-36445653 ( 46) GACTAGTC 1 chr1:248008846-248008926 ( 25) GACTAGTC 1 chr12:11708811-11708891 ( 57) AGCTAGTT 1 chr21:38232537-38232617 ( 28) AGCTAGTT 1 chr4:95456215-95456295 ( 58) GACTAGTC 1 chr19:4314105-4314185 ( 40) AGCTAGTT 1 chr1:212411119-212411199 ( 6) GACTAGTC 1 chr2:202060875-202060955 ( 16) AGCTAGTT 1 chr14:20773488-20773568 ( 15) GACTAGTC 1 chr1:245305664-245305744 ( 40) AGCTAGTT 1 chr4:48254500-48254580 ( 21) AACTAGCT 1 chr20:60524233-60524313 ( 69) AGCTAGTC 1 chr8:103768541-103768621 ( 54) AACTAGCT 1 chr8:97906322-97906402 ( 37) AACTAGCT 1 chr15:73014603-73014683 ( 61) AACTAGCT 1 chr3:108318807-108318887 ( 14) GGCTAGTT 1 chr19:13649836-13649916 ( 43) AACTAGCT 1 chr2:152231044-152231124 ( 4) TACTAGTT 1 chr22:29506014-29506094 ( 17) TACTAGTT 1 chr9:94663568-94663648 ( 72) TACTAGTT 1 chr5:88575645-88575725 ( 52) AACTAGTG 1 chr15:48884711-48884791 ( 56) TACTAGTT 1 chr3:182530136-182530216 ( 58) TACTAGTT 1 chr7:105998957-105999037 ( 34) AACTAGTG 1 chr4:123499113-123499193 ( 17) ACCTAGTT 1 chr15:58636807-58636887 ( 14) ACCTAGTT 1 chr1:85038831-85038911 ( 41) AACTAGTA 1 chr8:67013571-67013651 ( 4) AACTAGCC 1 chr15:66196882-66196962 ( 45) GACTAGCT 1 chr1:144893832-144893912 ( 41) AACTAGCC 1 chr16:81923793-81923873 ( 28) AACCAGTT 1 chr3:39309178-39309258 ( 27) GGCTAGTC 1 chr4:154125535-154125615 ( 19) GACTAGCT 1 chr4:140093583-140093663 ( 72) AACTAGTA 1 chrX:15913011-15913091 ( 43) AACCAGTT 1 chr2:39719426-39719506 ( 25) AACTAGTA 1 chr9:132532020-132532100 ( 29) AACTAGTA 1 chr11:16404344-16404424 ( 65) GACTAGCT 1 chr7:158544593-158544673 ( 4) AACTAGTA 1 chr3:70251285-70251365 ( 16) GACTAGTG 1 chr7:31022796-31022876 ( 45) AGCTAGCT 1 chr10:124690746-12469082 ( 29) AACCAGTC 1 chr11:8981224-8981304 ( 35) ACCTAGTC 1 chr5:138875730-138875810 ( 71) GACCAGTT 1 chr9:108059277-108059357 ( 5) AACCAGTC 1 chr7:154709095-154709175 ( 28) AACCAGTC 1 chr12:864278-864358 ( 18) GACTAGTA 1 chr18:46588692-46588772 ( 71) ACCTAGTC 1 chr10:13764909-13764989 ( 29) AGCTAGCT 1 chr3:136409677-136409757 ( 24) GACTAGTA 1 chr2:84266221-84266301 ( 64) AACCAGTC 1 chr12:8763799-8763879 ( 22) TGCTAGTT 1 chr1:211483117-211483197 ( 53) TGCTAGTT 1 chr7:156612802-156612882 ( 38) AACTAGGT 1 chr17:1521194-1521274 ( 31) TGCTAGTT 1 chr8:11656745-11656825 ( 35) GACCAGTC 1 chr6:34639718-34639798 ( 28) CACTAGTT 1 chr1:55325478-55325558 ( 59) CACTAGTT 1 chr1:32398258-32398338 ( 59) AGCTAGTA 1 chr7:135738500-135738580 ( 36) GGCTAGCT 1 chr12:47559929-47560009 ( 58) CACTAGTT 1 chr14:34409900-34409980 ( 56) CACTAGTT 1 chr6:130536896-130536976 ( 15) AACTGGTT 1 chr13:51250893-51250973 ( 66) GATTAGTT 1 chr2:32170757-32170837 ( 55) ATCTAGTT 1 chr10:112646135-11264621 ( 53) GATTAGTT 1 chr9:131795625-131795705 ( 71) AATTAGTC 1 chr22:46964098-46964178 ( 36) AACTAGGC 1 chr18:21207383-21207463 ( 5) GACTAGGT 1 chr4:56732624-56732704 ( 55) AACTAGGC 1 chr7:30636134-30636214 ( 58) ATCTAGTT 1 chr2:24167658-24167738 ( 67) AATTAGTC 1 chr13:79967190-79967270 ( 60) TACTAGCT 1 chr2:85639906-85639986 ( 37) TACTAGCT 1 chr12:71013422-71013502 ( 37) TGCTAGTC 1 chr4:16723340-16723420 ( 70) GGCCAGTT 1 chr9:37082358-37082438 ( 4) AACCAGCT 1 chr13:42528482-42528562 ( 44) AACCAGCT 1 chr3:113467881-113467961 ( 16) AACCAGCT 1 chr9:108061879-108061959 ( 30) AACTTGTT 1 chr14:75355691-75355771 ( 45) AACTAGAC 1 chr4:140089111-140089191 ( 59) ACCTAGTG 1 chr2:68833294-68833374 ( 40) GTCTAGTT 1 chr1:168310480-168310560 ( 15) AGTTAGTT 1 chr12:104872365-10487244 ( 28) GTCTAGTT 1 chr3:39388481-39388561 ( 59) AGTTAGTT 1 chr19:30458564-30458644 ( 16) AACCAGTG 1 chr10:13765127-13765207 ( 41) AGCTAGGT 1 chr11:9302321-9302401 ( 26) TCCTAGTT 1 chr5:88351277-88351357 ( 46) TACCAGTT 1 chr4:129503842-129503922 ( 29) AGTTAGTT 1 chr2:62116845-62116925 ( 41) GTCTAGTT 1 chr9:38171404-38171484 ( 6) TACTAGCC 1 chr12:111127773-11112785 ( 53) ACCTAGTG 1 chr1:89144207-89144287 ( 11) TCCTAGTT 1 chr10:99072865-99072945 ( 32) AACCAGTG 1 chr12:69206848-69206928 ( 72) AGTTAGTT 1 chr5:151105718-151105798 ( 12) CGCTAGTT 1 chr15:58778454-58778534 ( 29) GACCAGCT 1 chr2:65292408-65292488 ( 34) GACTAGCA 1 chr2:178772961-178773041 ( 58) ACCCAGTT 1 chr12:120670621-12067070 ( 47) AACCAGCC 1 chr5:118193631-118193711 ( 59) AACCAGCC 1 chr17:47416388-47416468 ( 71) AACCAGCC 1 chr21:34584554-34584634 ( 33) GACTTGTT 1 chr11:63642182-63642262 ( 14) AACTTGTC 1 chr6:108919530-108919610 ( 19) GACTTGTT 1 chr10:111770018-11177009 ( 34) AGCTGGTT 1 chr4:174082256-174082336 ( 33) AGCTAGAT 1 chr20:42648325-42648405 ( 26) GGTTAGTT 1 chr15:93451318-93451398 ( 24) AGTTAGTC 1 chr5:81692908-81692988 ( 44) TCCTAGTC 1 chr10:80798675-80798755 ( 12) GCCTAGTG 1 chr11:57503348-57503428 ( 32) GGTTAGTT 1 chr1:24961824-24961904 ( 22) AGTTAGTC 1 chr22:40297071-40297151 ( 36) GGTTAGTT 1 chr14:78009724-78009804 ( 53) AGCTAGCA 1 chr14:68146962-68147042 ( 5) GACCAGTA 1 chr11:118192292-11819237 ( 61) AGCTGGTC 1 chr5:77044128-77044208 ( 18) AACTAATT 1 chr14:50770617-50770697 ( 40) GGCTGGTT 1 chr18:11887510-11887590 ( 73) AACTAGGG 1 chrX:11426294-11426374 ( 17) GGTTAGTC 1 chr18:19335100-19335180 ( 47) AACTAGGA 1 chr12:57771111-57771191 ( 19) AACTAGAG 1 chr4:138890605-138890685 ( 15) TACTGGTT 1 chr6:160139846-160139926 ( 55) AACTGGTG 1 chr21:46631685-46631765 ( 34) CCCTAGTT 1 chr6:15359197-15359277 ( 21) CACTAGTA 1 chr3:151962111-151962191 ( 16) AACTAGAG 1 chr15:57377650-57377730 ( 36) GATTAGTG 1 chr2:102398025-102398105 ( 17) AACTTGCT 1 chr3:187165682-187165762 ( 12) AACTGGTA 1 chr6:126425350-126425430 ( 7) AACTTGCT 1 chr11:35270256-35270336 ( 53) TACTAGCG 1 chr12:106663094-10666317 ( 69) ATCTAGTA 1 chr14:97047536-97047616 ( 19) GTCTAGCT 1 chr4:68567388-68567468 ( 6) ATCCAGTT 1 chr1:185991517-185991597 ( 52) ACCTAGGC 1 chrX:117481328-117481408 ( 52) GACTAGGA 1 chr1:28462261-28462341 ( 70) ACTTAGTC 1 chr4:151865148-151865228 ( 17) TGCCAGTC 1 chr9:19901784-19901864 ( 27) ATCTAGCC 1 chr4:26344132-26344212 ( 42) ACTTAGTC 1 chr7:92635973-92636053 ( 68) GACTGGTG 1 chr17:46346745-46346825 ( 36) GACTAGAG 1 chr6:71108814-71108894 ( 42) ACCCAGCT 1 chrX:109330379-109330459 ( 3) GACTAGAA 1 chr1:145408986-145409066 ( 45) GACCAGAT 1 chr3:183024845-183024925 ( 32) GCCTGGTT 1 chr1:51435903-51435983 ( 61) GCCTGGTT 1 chr5:134489480-134489560 ( 19) TCCTAGTG 1 chr2:69855577-69855657 ( 58) GACCAGAT 1 chr4:160027087-160027167 ( 59) GACTAGAA 1 chr2:32206275-32206355 ( 44) AAGTAGTT 1 chr6:157219208-157219288 ( 51) TACCAGTG 1 chr12:133059973-13306005 ( 65) AACCAGAC 1 chr8:15424486-15424566 ( 73) TTCTAGTC 1 chr1:10011225-10011305 ( 12) GACTGGTA 1 chr15:64858909-64858989 ( 32) TCCCAGTT 1 chr1:169865321-169865401 ( 8) GCTTAGTC 1 chrX:107279734-107279814 ( 43) CACTAGGT 1 chrX:130043671-130043751 ( 36) AGTTAGTA 1 chr3:138405712-138405792 ( 14) AGTTAGCC 1 chr14:95652365-95652445 ( 8) GGTTAGCT 1 chr15:64524802-64524882 ( 21) AGCTAGGA 1 chr6:138150843-138150923 ( 52) AGCTAGAG 1 chr2:113561450-113561530 ( 9) AGCTAGAG 1 chr12:76468659-76468739 ( 55) GACTTGTG 1 chr17:45282147-45282227 ( 55) ACCCAGTA 1 chr16:75037558-75037638 ( 46) TGCTAGGC 1 chr3:171527260-171527340 ( 26) GGCTGGCT 1 chr3:67050625-67050705 ( 31) GACTTGCC 1 chr7:37384683-37384763 ( 64) AGCTAATC 1 chr3:182513341-182513421 ( 73) CACTGGTT 1 chr4:129689709-129689789 ( 53) AACTAACT 1 chr11:38178233-38178313 ( 14) AACCTGTC 1 chr12:27021806-27021886 ( 33) GTCCAGTC 1 chr3:3233787-3233867 ( 62) CACCAGCT 1 chr1:114323507-114323587 ( 37) AATTAGAC 1 chr12:119992571-11999265 ( 59) GACTAACT 1 chr11:71833781-71833861 ( 50) AGGTAGTT 1 chr10:112533630-11253371 ( 65) AACTAACC 1 chr10:71667408-71667488 ( 25) AACTAACC 1 chr5:81194426-81194506 ( 10) TCTTAGTT 1 chr4:103265163-103265243 ( 19) AACCAGGG 1 chr6:88414978-88415058 ( 46) AACTTGAT 1 chr3:33837788-33837868 ( 36) GGTCAGTC 1 chr2:192856294-192856374 ( 40) ACTCAGTT 1 chr6:15252615-15252695 ( 48) AACTGGAC 1 chrX:135850796-135850876 ( 23) TACTGGTA 1 chr4:81082637-81082717 ( 33) CACCAGCC 1 chr8:21794460-21794540 ( 22) TACTGGCC 1 chr10:98374350-98374430 ( 35) CCCTAGTA 1 chr4:48729819-48729899 ( 48) TTCTAGCC 1 chr3:99808720-99808800 ( 13) TCCTAGGC 1 chr2:42135044-42135124 ( 28) AACTTGCA 1 chr2:73678909-73678989 ( 50) TACCAGCA 1 chr12:120672602-12067268 ( 33) ACTCAGTC 1 chr1:32332116-32332196 ( 35) GACTGGAC 1 chr11:3892630-3892710 ( 32) AGTCAGCT 1 chr15:39650775-39650855 ( 60) TGTTAGTG 1 chr1:198625898-198625978 ( 39) GGTTGGTT 1 chr3:185647633-185647713 ( 62) TCCTTGTT 1 chr2:80589092-80589172 ( 65) AATTAGGG 1 chr3:156997150-156997230 ( 12) GACTTGCA 1 chr21:38337240-38337320 ( 67) TGTCAGTT 1 chr1:101719765-101719845 ( 11) AACCTGCC 1 chr16:81558060-81558140 ( 7) TGTTAGCC 1 chr11:96071108-96071188 ( 39) TCCTTGTC 1 chr6:37201479-37201559 ( 65) AACTAACG 1 chr2:28126884-28126964 ( 39) GACTAAGT 1 chr6:109702362-109702442 ( 11) CTCTAGTG 1 chr15:39697231-39697311 ( 28) GGCTGGAC 1 chr2:32206067-32206147 ( 71) ACCTAATG 1 chr17:31289338-31289418 ( 51) GACTAAGC 1 chr8:28728633-28728713 ( 16) AGTTAGGA 1 chr16:69629736-69629816 ( 17) AGTTAATC 1 chrX:65241430-65241510 ( 68) CCCCAGCC 1 chrX:133540419-133540499 ( 17) GTCCAGAT 1 chr5:137812240-137812320 ( 46) GGGCAGTT 1 chr2:9767481-9767561 ( 32) TGTTAGCA 1 chr5:39376589-39376669 ( 16) AAGTTGTC 1 chr1:78197974-78198054 ( 22) AATCAATC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RACTAGTY MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 6.16993 E= 4.2e-044 92 -205 39 -94 113 -90 5 -230 -1461 186 -378 -94 -1461 -33 -1461 156 166 -1461 -154 -211 -250 -1461 211 -1461 -191 -15 -161 123 -123 32 -103 82 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RACTAGTY MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 250 E= 4.2e-044 0.512000 0.056000 0.288000 0.144000 0.592000 0.124000 0.228000 0.056000 0.000000 0.840000 0.016000 0.144000 0.000000 0.184000 0.000000 0.816000 0.860000 0.000000 0.076000 0.064000 0.048000 0.000000 0.952000 0.000000 0.072000 0.208000 0.072000 0.648000 0.116000 0.288000 0.108000 0.488000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RACTAGTY MEME-1 regular expression -------------------------------------------------------------------------------- [AG][AG]CTAG[TC][TC] -------------------------------------------------------------------------------- Time 4.91 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCACTCC MEME-2 width = 8 sites = 14 llr = 136 E-value = 8.1e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCACTCC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::1a:1:: pos.-specific C aa9:a1a8 probability G :::::::: matrix T :::::8:2 bits 2.2 ** * * 2.0 ** ** * 1.7 ** ** * 1.5 ***** * Relative 1.3 ***** ** Entropy 1.1 ***** ** (14.0 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCCACTCC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCACTCC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr15:93451318-93451398 52 1.17e-05 ACTACCCACC CCCACTCC CCCAAGCTGA chr10:71667408-71667488 71 1.17e-05 TGATAACTAA CCCACTCC TG chr22:46964098-46964178 2 1.17e-05 A CCCACTCC CAAGATAGCT chr16:84171503-84171583 70 1.17e-05 agcgttccgc cccactcc ctg chrX:107279734-107279814 21 1.17e-05 CTGGTACTAA CCCACTCC AGCCTCCCTA chr10:99072865-99072945 15 1.17e-05 AACTCCCACC CCCACTCC CCACTGTCTA chr2:102398025-102398105 39 2.57e-05 acataactaa cccactct cttagactaa chr12:120670621-12067070 19 2.57e-05 GCATTAGTTA CCCACTCT TTGCTAATCA chr12:120672602-12067268 11 2.57e-05 ACGTAAGCCT CCCACTCT GACACACAGG chr2:152231044-152231124 20 3.71e-05 TTAACTTACT CCCACACC CCAGCCTTTC chr2:202060875-202060955 59 3.71e-05 GAGCTGACTC CCCACACC CCTGAGTTGC chr5:134489480-134489560 10 5.08e-05 TCTCCTTCC CCAACTCC GTCCTAGTGT chr7:135738500-135738580 58 5.08e-05 tatttgtaca ccaactcc tgctagtcat chr14:65563242-65563322 15 6.06e-05 GCGCCTCATC CCCACCCC CATTGGAGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCACTCC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:93451318-93451398 1.2e-05 51_[+2]_21 chr10:71667408-71667488 1.2e-05 70_[+2]_2 chr22:46964098-46964178 1.2e-05 1_[+2]_71 chr16:84171503-84171583 1.2e-05 69_[+2]_3 chrX:107279734-107279814 1.2e-05 20_[+2]_52 chr10:99072865-99072945 1.2e-05 14_[+2]_58 chr2:102398025-102398105 2.6e-05 38_[+2]_34 chr12:120670621-12067070 2.6e-05 18_[+2]_54 chr12:120672602-12067268 2.6e-05 10_[+2]_62 chr2:152231044-152231124 3.7e-05 19_[+2]_53 chr2:202060875-202060955 3.7e-05 58_[+2]_14 chr5:134489480-134489560 5.1e-05 9_[+2]_63 chr7:135738500-135738580 5.1e-05 57_[+2]_15 chr14:65563242-65563322 6.1e-05 14_[+2]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCACTCC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCACTCC width=8 seqs=14 chr15:93451318-93451398 ( 52) CCCACTCC 1 chr10:71667408-71667488 ( 71) CCCACTCC 1 chr22:46964098-46964178 ( 2) CCCACTCC 1 chr16:84171503-84171583 ( 70) CCCACTCC 1 chrX:107279734-107279814 ( 21) CCCACTCC 1 chr10:99072865-99072945 ( 15) CCCACTCC 1 chr2:102398025-102398105 ( 39) CCCACTCT 1 chr12:120670621-12067070 ( 19) CCCACTCT 1 chr12:120672602-12067268 ( 11) CCCACTCT 1 chr2:152231044-152231124 ( 20) CCCACACC 1 chr2:202060875-202060955 ( 59) CCCACACC 1 chr5:134489480-134489560 ( 10) CCAACTCC 1 chr7:135738500-135738580 ( 58) CCAACTCC 1 chr14:65563242-65563322 ( 15) CCCACCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCACTCC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.9532 E= 8.1e+002 -1045 211 -1045 -1045 -1045 211 -1045 -1045 -92 189 -1045 -1045 188 -1045 -1045 -1045 -1045 211 -1045 -1045 -92 -169 -1045 151 -1045 211 -1045 -1045 -1045 176 -1045 -37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCACTCC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 8.1e+002 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.142857 0.857143 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.142857 0.071429 0.000000 0.785714 0.000000 1.000000 0.000000 0.000000 0.000000 0.785714 0.000000 0.214286 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCACTCC MEME-2 regular expression -------------------------------------------------------------------------------- CCCACTC[CT] -------------------------------------------------------------------------------- Time 8.24 secs. ******************************************************************************** ******************************************************************************** MOTIF GKTTATCT MEME-3 width = 8 sites = 28 llr = 241 E-value = 8.0e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GKTTATCT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::1a::: pos.-specific C 1:::::a: probability G 66:::1:: matrix T 24a9:9:a bits 2.2 * 2.0 * * 1.7 * * ** 1.5 ****** Relative 1.3 ****** Entropy 1.1 ****** (12.4 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGTTATCT consensus TT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKTTATCT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr12:104872365-10487244 16 1.79e-05 AGTTAGCTTC GGTTATCT GTAAGTCTAG chr11:63642182-63642262 42 1.79e-05 ACATGACCTT GGTTATCT CTTTAACCAG chr9:108061879-108061959 38 1.79e-05 ccaacttgtt ggttatct ttagggcagt chr5:137812240-137812320 8 1.79e-05 CCCGAGA GGTTATCT GTACACTTTG chr1:89144207-89144287 64 1.79e-05 TTTCTCTGAT GGTTATCT CCTTGGCTT chr3:185647633-185647713 32 1.79e-05 CCTTGGCAAA GGTTATCT TCCTGAAACA chr16:81558060-81558140 35 1.79e-05 aagctcgtgg ggttatct ggaagtcttg chr1:78197974-78198054 44 4.05e-05 tcctaaaagt gtttatct ccaattcctt chr4:129503842-129503922 39 4.05e-05 agttaGTTGG GTTTATCT CTGAGAACTT chr3:182530136-182530216 22 4.05e-05 ATTTTTACCC GTTTATCT CCAATCTGGA chr10:99072865-99072945 40 4.05e-05 CTAACCAGTG GTTTATCT TTCCTGCCCA chr13:49636572-49636652 6 4.05e-05 cccct gtttatct ttccagtctt chr2:24700245-24700325 56 4.05e-05 TCTCTGATTA GTTTATCT TGCTTCTAGC chr1:55325478-55325558 37 6.30e-05 TAACCACTGC TGTTATCT TTCTGATCCT chr2:101923402-101923482 67 6.30e-05 cataaagtga tgttatct taCATA chr12:69206848-69206928 28 6.30e-05 ggacctgggt tgttatct ctgatctgtt chr17:46346745-46346825 17 6.30e-05 CACTAGAGAC TGTTATCT GTCTACACCA chr3:33837788-33837868 20 8.19e-05 TTTGCTTCTT CGTTATCT TCCCAATGGG chr18:19335100-19335180 65 1.10e-04 ACACAACATT TTTTATCT TTGTAAGC chr5:81692908-81692988 56 1.10e-04 CTAGTCATCT TTTTATCT TCCTGGGTAA chr14:50770617-50770697 15 1.34e-04 CCAATCTGCT CTTTATCT CCATAGCACG chr3:187165682-187165762 56 1.34e-04 CCCACAAGTG CTTTATCT AACCAACCAT chr2:42135044-42135124 51 1.34e-04 AGGCAGACAA CTTTATCT GCAGGCAACA chr10:13765127-13765207 16 1.48e-04 tccctatgct ggttagct aggtcaccat chr10:13764909-13764989 4 1.48e-04 gct ggttagct aggcttttat chr14:78009724-78009804 67 1.66e-04 AGCAAATAAA GGTAATCT CTGGTA chr3:128597408-128597488 18 1.66e-04 cacccagact ggtaatct ggctcaacta chr3:171527260-171527340 2 1.85e-04 G GCTTATCT TAACTAAAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKTTATCT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:104872365-10487244 1.8e-05 15_[+3]_57 chr11:63642182-63642262 1.8e-05 41_[+3]_31 chr9:108061879-108061959 1.8e-05 37_[+3]_35 chr5:137812240-137812320 1.8e-05 7_[+3]_65 chr1:89144207-89144287 1.8e-05 63_[+3]_9 chr3:185647633-185647713 1.8e-05 31_[+3]_41 chr16:81558060-81558140 1.8e-05 34_[+3]_38 chr1:78197974-78198054 4e-05 43_[+3]_29 chr4:129503842-129503922 4e-05 38_[+3]_34 chr3:182530136-182530216 4e-05 21_[+3]_51 chr10:99072865-99072945 4e-05 39_[+3]_33 chr13:49636572-49636652 4e-05 5_[+3]_67 chr2:24700245-24700325 4e-05 55_[+3]_17 chr1:55325478-55325558 6.3e-05 36_[+3]_36 chr2:101923402-101923482 6.3e-05 66_[+3]_6 chr12:69206848-69206928 6.3e-05 27_[+3]_45 chr17:46346745-46346825 6.3e-05 16_[+3]_56 chr3:33837788-33837868 8.2e-05 19_[+3]_53 chr18:19335100-19335180 0.00011 64_[+3]_8 chr5:81692908-81692988 0.00011 55_[+3]_17 chr14:50770617-50770697 0.00013 14_[+3]_58 chr3:187165682-187165762 0.00013 55_[+3]_17 chr2:42135044-42135124 0.00013 50_[+3]_22 chr10:13765127-13765207 0.00015 15_[+3]_57 chr10:13764909-13764989 0.00015 3_[+3]_69 chr14:78009724-78009804 0.00017 66_[+3]_6 chr3:128597408-128597488 0.00017 17_[+3]_55 chr3:171527260-171527340 0.00018 1_[+3]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKTTATCT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GKTTATCT width=8 seqs=28 chr12:104872365-10487244 ( 16) GGTTATCT 1 chr11:63642182-63642262 ( 42) GGTTATCT 1 chr9:108061879-108061959 ( 38) GGTTATCT 1 chr5:137812240-137812320 ( 8) GGTTATCT 1 chr1:89144207-89144287 ( 64) GGTTATCT 1 chr3:185647633-185647713 ( 32) GGTTATCT 1 chr16:81558060-81558140 ( 35) GGTTATCT 1 chr1:78197974-78198054 ( 44) GTTTATCT 1 chr4:129503842-129503922 ( 39) GTTTATCT 1 chr3:182530136-182530216 ( 22) GTTTATCT 1 chr10:99072865-99072945 ( 40) GTTTATCT 1 chr13:49636572-49636652 ( 6) GTTTATCT 1 chr2:24700245-24700325 ( 56) GTTTATCT 1 chr1:55325478-55325558 ( 37) TGTTATCT 1 chr2:101923402-101923482 ( 67) TGTTATCT 1 chr12:69206848-69206928 ( 28) TGTTATCT 1 chr17:46346745-46346825 ( 17) TGTTATCT 1 chr3:33837788-33837868 ( 20) CGTTATCT 1 chr18:19335100-19335180 ( 65) TTTTATCT 1 chr5:81692908-81692988 ( 56) TTTTATCT 1 chr14:50770617-50770697 ( 15) CTTTATCT 1 chr3:187165682-187165762 ( 56) CTTTATCT 1 chr2:42135044-42135124 ( 51) CTTTATCT 1 chr10:13765127-13765207 ( 16) GGTTAGCT 1 chr10:13764909-13764989 ( 4) GGTTAGCT 1 chr14:78009724-78009804 ( 67) GGTAATCT 1 chr3:128597408-128597488 ( 18) GGTAATCT 1 chr3:171527260-171527340 ( 2) GCTTATCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKTTATCT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.5697 E= 8.0e+000 -1145 -70 154 -37 -1145 -269 137 51 -1145 -1145 -1145 185 -192 -1145 -1145 175 188 -1145 -1145 -1145 -1145 -1145 -162 175 -1145 211 -1145 -1145 -1145 -1145 -1145 185 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKTTATCT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 8.0e+000 0.000000 0.142857 0.642857 0.214286 0.000000 0.035714 0.571429 0.392857 0.000000 0.000000 0.000000 1.000000 0.071429 0.000000 0.000000 0.928571 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.071429 0.928571 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKTTATCT MEME-3 regular expression -------------------------------------------------------------------------------- [GT][GT]TTATCT -------------------------------------------------------------------------------- Time 11.54 secs. ******************************************************************************** ******************************************************************************** MOTIF GAGATAAS MEME-4 width = 8 sites = 13 llr = 127 E-value = 8.9e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGATAAS MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a:7:aa: pos.-specific C :::3:::4 probability G a:a::::6 matrix T ::::a::: bits 2.2 * * 2.0 *** ** 1.7 *** *** 1.5 *** *** Relative 1.3 *** *** Entropy 1.1 ******** (14.1 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAGATAAG consensus C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGATAAS MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:172011058-172011138 37 1.59e-05 aactgaagca gagataag caacttgccc chr12:119992571-11999265 11 1.59e-05 tgctggcctt gagataag cagtgttaaa chr14:78009724-78009804 2 1.59e-05 A GAGATAAG GAACGTAAAC chr1:101719765-101719845 35 1.59e-05 tctcatttca gagataag TGACTCGCTC chr4:129689709-129689789 15 1.59e-05 AAGAGAGCGT GAGATAAG GAGAGAGTTG chr9:19901784-19901864 13 1.59e-05 gaaagctact gagataag tctcttatct chr11:71833781-71833861 60 3.27e-05 aggtagttaa gagataac catttgcatt chr3:3233787-3233867 28 3.27e-05 gttgtcttga gagataac agcttgccca chr2:178772961-178773041 70 3.27e-05 CCAGTTTCCG GAGATAAC AAG chr5:138875730-138875810 26 4.63e-05 CACACATCAT GAGCTAAG TGACCGCGGC chr15:48884711-48884791 34 4.63e-05 CTGTACCACT GAGCTAAG AAGTGATTAA chr18:11887510-11887590 47 6.07e-05 GTGCCGGTTA GAGCTAAC TGGGTATGGA chr1:64163844-64163924 6 6.07e-05 TGACT GAGCTAAC AAGTCCCCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGATAAS MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:172011058-172011138 1.6e-05 36_[+4]_36 chr12:119992571-11999265 1.6e-05 10_[+4]_62 chr14:78009724-78009804 1.6e-05 1_[+4]_71 chr1:101719765-101719845 1.6e-05 34_[+4]_38 chr4:129689709-129689789 1.6e-05 14_[+4]_58 chr9:19901784-19901864 1.6e-05 12_[+4]_60 chr11:71833781-71833861 3.3e-05 59_[+4]_13 chr3:3233787-3233867 3.3e-05 27_[+4]_45 chr2:178772961-178773041 3.3e-05 69_[+4]_3 chr5:138875730-138875810 4.6e-05 25_[+4]_47 chr15:48884711-48884791 4.6e-05 33_[+4]_39 chr18:11887510-11887590 6.1e-05 46_[+4]_26 chr1:64163844-64163924 6.1e-05 5_[+4]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGATAAS MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGATAAS width=8 seqs=13 chr2:172011058-172011138 ( 37) GAGATAAG 1 chr12:119992571-11999265 ( 11) GAGATAAG 1 chr14:78009724-78009804 ( 2) GAGATAAG 1 chr1:101719765-101719845 ( 35) GAGATAAG 1 chr4:129689709-129689789 ( 15) GAGATAAG 1 chr9:19901784-19901864 ( 13) GAGATAAG 1 chr11:71833781-71833861 ( 60) GAGATAAC 1 chr3:3233787-3233867 ( 28) GAGATAAC 1 chr2:178772961-178773041 ( 70) GAGATAAC 1 chr5:138875730-138875810 ( 26) GAGCTAAG 1 chr15:48884711-48884791 ( 34) GAGCTAAG 1 chr18:11887510-11887590 ( 47) GAGCTAAC 1 chr1:64163844-64163924 ( 6) GAGCTAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGATAAS MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.985 E= 8.9e+002 -1035 -1035 218 -1035 188 -1035 -1035 -1035 -1035 -1035 218 -1035 135 41 -1035 -1035 -1035 -1035 -1035 185 188 -1035 -1035 -1035 188 -1035 -1035 -1035 -1035 73 148 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGATAAS MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 8.9e+002 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.692308 0.307692 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.384615 0.615385 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGATAAS MEME-4 regular expression -------------------------------------------------------------------------------- GAG[AC]TAA[GC] -------------------------------------------------------------------------------- Time 14.80 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGWRGGG MEME-5 width = 8 sites = 21 llr = 186 E-value = 1.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGWRGGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::34::: pos.-specific C :::::::: probability G aa8:4a7a matrix T ::271:3: bits 2.2 ** * * 2.0 ** * * 1.7 ** * * 1.5 ** * * Relative 1.3 *** *** Entropy 1.1 *** *** (12.8 bits) 0.9 **** *** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGTAGGG consensus TAG T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGWRGGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:108919530-108919610 59 6.91e-06 Gacatttgta gggtgggg atgacagggg chr11:71833781-71833861 28 6.91e-06 cttgaagtgg gggtgggg gtcttcctgg chr6:138150843-138150923 61 6.91e-06 TAGCTAGAGA GGGTGGGG TGAAGCACAA chr18:11887510-11887590 30 1.54e-05 GTAAGGCAGA GGGTAGGG TGCCGGTTAG chrX:11426294-11426374 67 2.22e-05 TAAGGAGGCA GGGAGGGG GAAGCG chr11:57503348-57503428 60 2.22e-05 aactgcaaaa gggagggg cagtgtcagg chr9:19901784-19901864 70 2.22e-05 caggcggggt gggagggg gga chrX:65241430-65241510 20 3.05e-05 TGGCATGTGT GGGAAGGG GAAAGACCAA chr2:62116845-62116925 4 3.92e-05 ACT GGGTGGTG GAGGTTTGAC chr10:112646135-11264621 45 4.99e-05 TTGTGTTTGA GGGTAGTG GATTAGTTGT chr2:28126884-28126964 58 4.99e-05 actaacgggt gggtagtg tagacagtta chr4:16723340-16723420 58 6.73e-05 TCTGTCGATA GGGTTGGG CACAGGCCAG chr4:160027087-160027167 34 6.73e-05 CCTACTATCA GGTTGGGG GGCGGGTCAC chr6:71108814-71108894 8 6.73e-05 GACTTGA GGGTTGGG TTTAGTTATT chr15:66196882-66196962 59 7.80e-05 AGCTGTTCTT GGTTAGGG AATGGTTGTG chr6:157219208-157219288 14 7.80e-05 GAGTGACCAT GGTTAGGG TTAGACTGGG chr12:8763799-8763879 60 7.80e-05 TCCCTTCTCT GGTTAGGG GCCTGTTTCC chr10:80798675-80798755 2 8.65e-05 t gggaggtg gggcctagtg chr2:69855577-69855657 28 9.70e-05 gctcagagag gggaagtg atatatccaa chr4:68567388-68567468 32 1.25e-04 taaatttgtg ggtaaggg aaaggaactt chr12:111127773-11112785 8 1.46e-04 CTCCTTG GGGTtgtg ttagtttcct -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGWRGGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:108919530-108919610 6.9e-06 58_[+5]_14 chr11:71833781-71833861 6.9e-06 27_[+5]_45 chr6:138150843-138150923 6.9e-06 60_[+5]_12 chr18:11887510-11887590 1.5e-05 29_[+5]_43 chrX:11426294-11426374 2.2e-05 66_[+5]_6 chr11:57503348-57503428 2.2e-05 59_[+5]_13 chr9:19901784-19901864 2.2e-05 69_[+5]_3 chrX:65241430-65241510 3.1e-05 19_[+5]_53 chr2:62116845-62116925 3.9e-05 3_[+5]_69 chr10:112646135-11264621 5e-05 44_[+5]_28 chr2:28126884-28126964 5e-05 57_[+5]_15 chr4:16723340-16723420 6.7e-05 57_[+5]_15 chr4:160027087-160027167 6.7e-05 33_[+5]_39 chr6:71108814-71108894 6.7e-05 7_[+5]_65 chr15:66196882-66196962 7.8e-05 58_[+5]_14 chr6:157219208-157219288 7.8e-05 13_[+5]_59 chr12:8763799-8763879 7.8e-05 59_[+5]_13 chr10:80798675-80798755 8.7e-05 1_[+5]_71 chr2:69855577-69855657 9.7e-05 27_[+5]_45 chr4:68567388-68567468 0.00012 31_[+5]_41 chr12:111127773-11112785 0.00015 7_[+5]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGWRGGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGWRGGG width=8 seqs=21 chr6:108919530-108919610 ( 59) GGGTGGGG 1 chr11:71833781-71833861 ( 28) GGGTGGGG 1 chr6:138150843-138150923 ( 61) GGGTGGGG 1 chr18:11887510-11887590 ( 30) GGGTAGGG 1 chrX:11426294-11426374 ( 67) GGGAGGGG 1 chr11:57503348-57503428 ( 60) GGGAGGGG 1 chr9:19901784-19901864 ( 70) GGGAGGGG 1 chrX:65241430-65241510 ( 20) GGGAAGGG 1 chr2:62116845-62116925 ( 4) GGGTGGTG 1 chr10:112646135-11264621 ( 45) GGGTAGTG 1 chr2:28126884-28126964 ( 58) GGGTAGTG 1 chr4:16723340-16723420 ( 58) GGGTTGGG 1 chr4:160027087-160027167 ( 34) GGTTGGGG 1 chr6:71108814-71108894 ( 8) GGGTTGGG 1 chr15:66196882-66196962 ( 59) GGTTAGGG 1 chr6:157219208-157219288 ( 14) GGTTAGGG 1 chr12:8763799-8763879 ( 60) GGTTAGGG 1 chr10:80798675-80798755 ( 2) GGGAGGTG 1 chr2:69855577-69855657 ( 28) GGGAAGTG 1 chr4:68567388-68567468 ( 32) GGTAAGGG 1 chr12:111127773-11112785 ( 8) GGGTTGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGWRGGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0668 E= 1.9e+003 -1104 -1104 218 -1104 -1104 -1104 218 -1104 -1104 -1104 179 -22 30 -1104 -1104 127 66 -1104 96 -95 -1104 -1104 218 -1104 -1104 -1104 170 5 -1104 -1104 218 -1104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGWRGGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 1.9e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.761905 0.238095 0.333333 0.000000 0.000000 0.666667 0.428571 0.000000 0.428571 0.142857 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.714286 0.285714 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGWRGGG MEME-5 regular expression -------------------------------------------------------------------------------- GG[GT][TA][AG]G[GT]G -------------------------------------------------------------------------------- Time 18.03 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:26344132-26344212 1.89e-01 80 chr14:65563242-65563322 2.74e-03 14_[+2(6.06e-05)]_8_[+1(5.72e-05)]_\ 42 chr15:39697231-39697311 4.51e-01 80 chr11:3892630-3892710 4.99e-01 80 chr1:32332116-32332196 5.94e-01 80 chr14:34409900-34409980 4.07e-02 80 chr2:84266221-84266301 1.46e-01 80 chr1:245305664-245305744 3.23e-01 39_[+1(8.94e-05)]_33 chr17:1521194-1521274 1.45e-01 80 chrX:133540419-133540499 2.19e-01 80 chr12:71013422-71013502 2.53e-01 80 chr2:85639906-85639986 5.50e-02 80 chr3:151962111-151962191 1.27e-01 80 chr6:15252615-15252695 4.36e-01 80 chr1:10011225-10011305 7.37e-02 80 chr6:71108814-71108894 1.35e-02 7_[+5(6.73e-05)]_65 chr7:105998957-105999037 2.13e-01 80 chr13:79967190-79967270 2.53e-01 80 chr2:24700245-24700325 1.36e-03 32_[+1(2.16e-05)]_15_[+3(4.05e-05)]_\ 17 chr6:130536896-130536976 1.86e-01 80 chr9:98980197-98980277 2.18e-02 8_[+1(5.72e-05)]_23_[+1(5.72e-05)]_\ 33 chr12:27021806-27021886 1.44e-01 80 chr8:61204628-61204708 3.38e-02 40_[+1(5.72e-05)]_32 chr17:47416388-47416468 1.33e-01 80 chr14:75355691-75355771 2.21e-01 80 chr17:46346745-46346825 7.95e-03 16_[+3(6.30e-05)]_56 chr7:158544593-158544673 4.56e-02 80 chr3:136409677-136409757 2.83e-02 80 chr16:81558060-81558140 4.67e-02 34_[+3(1.79e-05)]_38 chr12:47559929-47560009 3.12e-02 80 chr9:19901784-19901864 3.91e-05 12_[+4(1.59e-05)]_49_[+5(2.22e-05)]_\ 3 chr10:98374350-98374430 3.92e-01 80 chr4:103265163-103265243 1.88e-01 80 chr2:80589092-80589172 9.29e-01 80 chr3:185647633-185647713 3.76e-02 31_[+3(1.79e-05)]_41 chr1:64163844-64163924 5.51e-04 5_[+4(6.07e-05)]_17_[+1(2.16e-05)]_\ 42 chr17:45282147-45282227 6.95e-01 80 chr10:7861202-7861282 1.64e-01 26_[+1(2.16e-05)]_46 chr5:81194426-81194506 2.41e-01 80 chr6:15359197-15359277 7.28e-01 80 chr12:120672602-12067268 4.35e-02 10_[+2(2.57e-05)]_62 chr11:35270256-35270336 8.66e-01 80 chr12:69206848-69206928 3.40e-02 27_[+3(6.30e-05)]_45 chr8:21794460-21794540 2.11e-01 80 chr10:13764909-13764989 4.19e-02 80 chr21:46631685-46631765 9.44e-02 80 chr13:49636572-49636652 7.51e-04 5_[+3(4.05e-05)]_33_[+1(2.16e-05)]_\ 26 chr11:38178233-38178313 9.51e-01 80 chr11:16404344-16404424 1.27e-02 80 chr4:129689709-129689789 5.68e-03 14_[+4(1.59e-05)]_58 chr7:156612802-156612882 2.33e-02 80 chr18:46588692-46588772 1.58e-02 80 chr10:99072865-99072945 6.05e-04 14_[+2(1.17e-05)]_17_[+3(4.05e-05)]_\ 33 chr12:76468659-76468739 3.07e-01 80 chr5:118193631-118193711 5.69e-01 80 chr2:24167658-24167738 1.27e-01 80 chr12:864278-864358 2.37e-01 80 chr4:151865148-151865228 2.24e-01 80 chr3:113467881-113467961 1.85e-01 80 chr2:192856294-192856374 5.31e-01 80 chr19:13649836-13649916 8.51e-02 80 chr1:198625898-198625978 3.70e-02 80 chr15:39650775-39650855 7.26e-01 80 chr8:15424486-15424566 1.60e-01 80 chr22:40297071-40297151 1.06e-01 80 chr15:64524802-64524882 2.40e-01 80 chr3:108318807-108318887 4.97e-02 80 chr14:95652365-95652445 2.97e-02 80 chr14:68146962-68147042 2.44e-01 80 chr6:160139846-160139926 8.93e-01 80 chr1:89144207-89144287 3.63e-02 63_[+3(1.79e-05)]_9 chr2:9767481-9767561 8.43e-01 80 chr15:73014603-73014683 1.81e-01 80 chr6:109702362-109702442 5.22e-01 80 chr12:133059973-13306005 5.48e-01 80 chr7:92635973-92636053 2.46e-01 80 chr12:111127773-11112785 3.63e-02 80 chr1:211483117-211483197 3.00e-01 80 chr3:182513341-182513421 2.66e-01 80 chr8:97906322-97906402 7.82e-02 80 chr14:20773488-20773568 5.70e-02 14_[+1(8.94e-05)]_58 chr9:132532020-132532100 7.27e-02 80 chr11:17853589-17853669 1.18e-02 23_[+1(2.16e-05)]_49 chr2:73678909-73678989 8.31e-01 80 chr9:38171404-38171484 4.60e-01 80 chr12:124286325-12428640 4.08e-02 28_[+1(2.16e-05)]_44 chr1:24961824-24961904 2.61e-01 80 chr2:28126884-28126964 4.37e-02 57_[+5(4.99e-05)]_15 chr3:182530136-182530216 7.24e-03 21_[+3(4.05e-05)]_51 chr12:8763799-8763879 8.83e-03 59_[+5(7.80e-05)]_13 chr2:113561450-113561530 4.51e-01 80 chr8:103768541-103768621 6.58e-02 80 chr12:120670621-12067070 3.83e-02 18_[+2(2.57e-05)]_54 chr2:178772961-178773041 2.61e-02 69_[+4(3.27e-05)]_3 chr11:57503348-57503428 1.24e-02 59_[+5(2.22e-05)]_13 chr15:48884711-48884791 2.13e-02 33_[+4(4.63e-05)]_39 chr2:42135044-42135124 1.60e-01 80 chr6:157219208-157219288 7.87e-03 13_[+5(7.80e-05)]_59 chr7:30636134-30636214 2.29e-01 80 chr4:56732624-56732704 3.41e-01 80 chr17:31289338-31289418 3.20e-01 80 chr2:39719426-39719506 2.79e-01 80 chr2:62116845-62116925 2.70e-02 3_[+5(3.92e-05)]_69 chr4:129503842-129503922 5.41e-02 38_[+3(4.05e-05)]_34 chr4:174082256-174082336 3.29e-02 80 chrX:15913011-15913091 1.83e-01 80 chr20:60524233-60524313 7.98e-02 80 chr4:140093583-140093663 2.64e-01 80 chr7:135738500-135738580 3.60e-03 57_[+2(5.08e-05)]_15 chr3:138405712-138405792 5.79e-01 80 chr7:154709095-154709175 2.37e-01 80 chr5:88575645-88575725 1.29e-01 80 chr2:202060875-202060955 8.18e-04 15_[+1(8.94e-05)]_35_[+2(3.71e-05)]_\ 14 chrX:130043671-130043751 2.02e-01 80 chr1:28462261-28462341 6.60e-01 80 chr7:37384683-37384763 1.91e-01 80 chrX:117481328-117481408 9.22e-01 80 chr3:128597408-128597488 3.84e-04 30_[+1(2.16e-05)]_42 chr9:94663568-94663648 7.57e-02 80 chr8:28728633-28728713 4.00e-01 80 chrX:107279734-107279814 1.13e-02 20_[+2(1.17e-05)]_52 chr1:185991517-185991597 2.87e-02 80 chr18:11887510-11887590 2.51e-04 29_[+5(1.54e-05)]_9_[+4(6.07e-05)]_\ 26 chr18:21207383-21207463 2.68e-02 80 chr1:101719765-101719845 3.19e-03 34_[+4(1.59e-05)]_38 chr4:154125535-154125615 2.13e-02 80 chr2:32206275-32206355 3.73e-01 80 chr16:84171503-84171583 5.85e-04 1_[+1(5.72e-05)]_60_[+2(1.17e-05)]_\ 3 chr2:65292408-65292488 2.95e-01 80 chr5:88351277-88351357 7.00e-02 80 chr22:46964098-46964178 4.48e-03 1_[+2(1.17e-05)]_12_[+2(3.71e-05)]_\ 51 chr9:131795625-131795705 8.23e-02 80 chr10:112646135-11264621 1.31e-02 44_[+5(4.99e-05)]_28 chr6:126425350-126425430 3.67e-02 1_[+4(3.27e-05)]_71 chr22:29506014-29506094 5.02e-02 80 chr1:95718136-95718216 1.14e-01 62_[+1(5.72e-05)]_10 chrX:65241430-65241510 1.32e-01 19_[+5(3.05e-05)]_53 chr9:108059277-108059357 1.46e-01 80 chr11:9302321-9302401 7.69e-02 80 chrX:117463293-117463373 6.50e-02 64_[+1(5.72e-05)]_8 chr4:79569926-79570006 1.43e-01 21_[+1(5.72e-05)]_51 chr3:187165682-187165762 3.83e-02 80 chr3:33837788-33837868 6.76e-02 19_[+3(8.19e-05)]_53 chr1:78197974-78198054 6.50e-02 43_[+3(4.05e-05)]_29 chr3:99808720-99808800 8.10e-01 80 chr1:212411119-212411199 4.01e-02 5_[+1(8.94e-05)]_67 chr19:4314105-4314185 7.57e-02 39_[+1(8.94e-05)]_33 chr4:95456215-95456295 1.07e-01 57_[+1(8.94e-05)]_15 chr5:39376589-39376669 1.10e-01 80 chr4:68567388-68567468 2.10e-01 80 chr2:152231044-152231124 7.03e-03 19_[+2(3.71e-05)]_53 chr2:32170757-32170837 5.61e-02 80 chr4:160027087-160027167 3.31e-02 33_[+5(6.73e-05)]_39 chr5:137812240-137812320 1.75e-02 7_[+3(1.79e-05)]_65 chr10:111770018-11177009 6.07e-02 80 chr2:101923402-101923482 5.79e-04 40_[+1(2.16e-05)]_18_[+3(6.30e-05)]_\ 6 chr2:69855577-69855657 1.87e-02 27_[+5(9.70e-05)]_45 chr10:13765127-13765207 8.25e-02 80 chr3:39309178-39309258 1.67e-02 80 chr5:134489480-134489560 2.88e-02 9_[+2(5.08e-05)]_63 chr16:81923793-81923873 2.37e-01 80 chr10:80798675-80798755 3.62e-03 1_[+5(8.65e-05)]_71 chr13:42528482-42528562 2.12e-01 80 chr21:38232537-38232617 2.95e-02 27_[+1(8.94e-05)]_45 chr2:32206067-32206147 6.51e-01 80 chr15:63800579-63800659 2.93e-03 61_[+1(2.16e-05)]_11 chr3:197161022-197161102 7.17e-02 7_[+1(5.72e-05)]_14_[+1(5.72e-05)]_\ 14_[+1(5.72e-05)]_21 chr19:30458564-30458644 2.88e-01 80 chr8:15493386-15493466 8.73e-02 48_[+1(5.72e-05)]_24 chr9:108061879-108061959 6.04e-03 37_[+3(1.79e-05)]_35 chr4:138890605-138890685 2.66e-02 80 chr6:37201479-37201559 9.60e-01 80 chr9:37082358-37082438 3.36e-01 80 chr4:81082637-81082717 1.17e-01 80 chr3:70251285-70251365 1.13e-02 80 chr1:144893832-144893912 3.48e-02 80 chr6:88414978-88415058 9.89e-02 80 chr14:78009724-78009804 1.34e-03 1_[+4(1.59e-05)]_71 chr5:138875730-138875810 9.42e-03 25_[+4(4.63e-05)]_47 chr11:8981224-8981304 1.22e-01 80 chr15:58778454-58778534 3.44e-02 80 chr3:39388481-39388561 5.00e-02 80 chr2:102398025-102398105 1.42e-02 38_[+2(2.57e-05)]_34 chr1:51435903-51435983 2.55e-02 80 chr10:71667408-71667488 4.98e-02 10_[+2(6.06e-05)]_12_[+2(2.57e-05)]_\ 32_[+2(1.17e-05)]_2 chr5:156962179-156962259 3.43e-03 25_[+1(2.16e-05)]_47 chr16:69629736-69629816 2.91e-01 80 chr1:114323507-114323587 5.38e-01 80 chr4:48729819-48729899 5.61e-01 80 chr10:112533630-11253371 7.29e-02 80 chr1:32398258-32398338 1.87e-01 80 chr11:96071108-96071188 5.04e-01 80 chr12:11708811-11708891 1.06e-01 56_[+1(8.94e-05)]_16 chr3:67050625-67050705 3.06e-01 80 chr3:3233787-3233867 2.50e-02 27_[+4(3.27e-05)]_45 chr1:248008846-248008926 2.33e-02 24_[+1(8.94e-05)]_48 chr10:124690746-12469082 2.06e-01 80 chr8:134870651-134870731 6.11e-02 8_[+1(5.72e-05)]_64 chr15:66196882-66196962 8.25e-04 58_[+5(7.80e-05)]_14 chr8:67013571-67013651 3.91e-02 80 chr22:36445573-36445653 7.63e-02 45_[+1(8.94e-05)]_27 chr14:70110293-70110373 2.53e-02 8_[+1(5.72e-05)]_64 chr6:138150843-138150923 7.22e-04 60_[+5(6.91e-06)]_12 chr5:81692908-81692988 1.10e-01 80 chr18:19335100-19335180 8.70e-02 80 chr1:85038831-85038911 6.43e-02 80 chr3:183024845-183024925 1.11e-01 80 chr11:71833781-71833861 1.08e-03 27_[+5(6.91e-06)]_24_[+4(3.27e-05)]_\ 13 chr3:171527260-171527340 7.35e-02 80 chr1:55325478-55325558 2.21e-03 36_[+3(6.30e-05)]_36 chr6:108919530-108919610 9.65e-04 58_[+5(6.91e-06)]_14 chr1:169865321-169865401 2.65e-01 80 chr4:16723340-16723420 3.44e-02 57_[+5(6.73e-05)]_15 chr5:151105718-151105798 2.10e-01 80 chr12:119992571-11999265 3.90e-02 10_[+4(1.59e-05)]_62 chr12:57771111-57771191 5.74e-01 80 chr21:38337240-38337320 1.40e-02 60_[+5(4.99e-05)]_12 chr14:50770617-50770697 1.29e-02 80 chr11:63642182-63642262 2.19e-02 41_[+3(1.79e-05)]_31 chr3:156997150-156997230 3.80e-01 80 chr12:104872365-10487244 1.88e-02 15_[+3(1.79e-05)]_57 chr15:64858909-64858989 1.77e-01 80 chr1:168310480-168310560 1.20e-01 80 chr15:58636807-58636887 9.54e-02 80 chr6:34639718-34639798 1.26e-01 80 chr14:34386073-34386153 2.87e-02 64_[+1(8.94e-05)]_8 chr4:123499113-123499193 2.62e-01 80 chr14:97047536-97047616 2.75e-01 80 chr1:145408986-145409066 1.11e-01 80 chr7:31022796-31022876 1.01e-02 80 chr16:75037558-75037638 2.39e-01 80 chr8:11656745-11656825 6.15e-02 80 chr15:93451318-93451398 2.54e-03 51_[+2(1.17e-05)]_21 chr4:48254500-48254580 9.43e-03 80 chrX:109330379-109330459 7.78e-01 80 chr2:68833294-68833374 4.91e-02 80 chr5:77044128-77044208 3.33e-02 80 chr5:141489720-141489800 4.99e-03 30_[+1(5.72e-05)]_42 chr21:34584554-34584634 4.00e-01 80 chr6:164497996-164498076 3.92e-02 13_[+1(2.16e-05)]_15_[+1(2.16e-05)]_\ 36 chr11:118192292-11819237 7.34e-01 80 chr2:172011058-172011138 2.57e-03 36_[+4(1.59e-05)]_20_[+1(8.94e-05)]_\ 8 chr4:140089111-140089191 3.13e-01 80 chr13:51250893-51250973 4.25e-02 80 chr2:223784706-223784786 6.81e-02 18_[+1(8.94e-05)]_54 chr15:57377650-57377730 1.57e-02 80 chr20:42648325-42648405 2.41e-01 80 chr12:106663094-10666317 2.03e-01 80 chrX:135850796-135850876 2.84e-01 80 chrX:11426294-11426374 1.21e-02 66_[+5(2.22e-05)]_6 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n09.farnam.hpc.yale.internal ********************************************************************************