******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/HDGF.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr19:8657292-8657372 1.0000 80 chr19:7935731-7935811 1.0000 80 chr19:50864694-50864774 1.0000 80 chr4:6597771-6597851 1.0000 80 chr17:1454209-1454289 1.0000 80 chr19:12951415-12951495 1.0000 80 chr16:29889015-29889095 1.0000 80 chr12:131555667-13155574 1.0000 80 chr19:6718740-6718820 1.0000 80 chr19:1063020-1063100 1.0000 80 chr4:4674942-4675022 1.0000 80 chr19:18990793-18990873 1.0000 80 chr19:7708645-7708725 1.0000 80 chr9:130698426-130698506 1.0000 80 chr10:3215392-3215472 1.0000 80 chr19:3285346-3285426 1.0000 80 chr8:11314196-11314276 1.0000 80 chr1:16835695-16835775 1.0000 80 chr19:17320545-17320625 1.0000 80 chr19:6767659-6767739 1.0000 80 chr1:21934414-21934494 1.0000 80 chr1:38470319-38470399 1.0000 80 chr19:46170988-46171068 1.0000 80 chr17:76136572-76136652 1.0000 80 chr10:104495348-10449542 1.0000 80 chr17:39823679-39823759 1.0000 80 chr4:3783208-3783288 1.0000 80 chr16:84047806-84047886 1.0000 80 chr19:17650570-17650650 1.0000 80 chr19:6161473-6161553 1.0000 80 chr19:47931533-47931613 1.0000 80 chr8:144302029-144302109 1.0000 80 chr2:183814706-183814786 1.0000 80 chr17:27039621-27039701 1.0000 80 chr19:49646354-49646434 1.0000 80 chr9:136113895-136113975 1.0000 80 chr12:131925597-13192567 1.0000 80 chr12:6723436-6723516 1.0000 80 chr19:38997698-38997778 1.0000 80 chr2:47141062-47141142 1.0000 80 chr12:109125915-10912599 1.0000 80 chr17:42853106-42853186 1.0000 80 chr19:3177169-3177249 1.0000 80 chr19:50431987-50432067 1.0000 80 chr20:23640755-23640835 1.0000 80 chr1:26147433-26147513 1.0000 80 chr19:53105456-53105536 1.0000 80 chr12:131709123-13170920 1.0000 80 chr12:131709327-13170940 1.0000 80 chr7:111079255-111079335 1.0000 80 chr17:27193150-27193230 1.0000 80 chr19:56110415-56110495 1.0000 80 chr22:19410161-19410241 1.0000 80 chr9:130965089-130965169 1.0000 80 chrX:148620986-148621066 1.0000 80 chr6:2921249-2921329 1.0000 80 chr19:50215727-50215807 1.0000 80 chr19:49866723-49866803 1.0000 80 chr1:16766783-16766863 1.0000 80 chr6:43021004-43021084 1.0000 80 chr2:128642557-128642637 1.0000 80 chr10:23384071-23384151 1.0000 80 chr10:70310578-70310658 1.0000 80 chr19:50249559-50249639 1.0000 80 chr7:74002045-74002125 1.0000 80 chr19:6516140-6516220 1.0000 80 chr17:27200520-27200600 1.0000 80 chr3:128135332-128135412 1.0000 80 chrX:1571979-1572059 1.0000 80 chr8:145596476-145596556 1.0000 80 chr22:19947548-19947628 1.0000 80 chr19:7670797-7670877 1.0000 80 chr19:517108-517188 1.0000 80 chr6:30658544-30658624 1.0000 80 chr19:1455707-1455787 1.0000 80 chr11:6256185-6256265 1.0000 80 chr1:31204681-31204761 1.0000 80 chr20:4018762-4018842 1.0000 80 chr19:7708845-7708925 1.0000 80 chr11:119227435-11922751 1.0000 80 chr2:220159154-220159234 1.0000 80 chr19:6161679-6161759 1.0000 80 chr1:166459716-166459796 1.0000 80 chr19:7670577-7670657 1.0000 80 chr19:45943602-45943682 1.0000 80 chr1:28845650-28845730 1.0000 80 chr6:168241328-168241408 1.0000 80 chr19:36361022-36361102 1.0000 80 chr19:3608072-3608152 1.0000 80 chr2:43446597-43446677 1.0000 80 chr21:45848437-45848517 1.0000 80 chr19:54693895-54693975 1.0000 80 chr1:1851269-1851349 1.0000 80 chr20:32581155-32581235 1.0000 80 chr6:26440908-26440988 1.0000 80 chr11:68742580-68742660 1.0000 80 chr10:81159338-81159418 1.0000 80 chr3:10184573-10184653 1.0000 80 chr4:3957545-3957625 1.0000 80 chr16:79880061-79880141 1.0000 80 chr17:38227241-38227321 1.0000 80 chr16:1393092-1393172 1.0000 80 chr20:44539522-44539602 1.0000 80 chr6:41169645-41169725 1.0000 80 chr20:31063975-31064055 1.0000 80 chr22:20772199-20772279 1.0000 80 chr6:20213876-20213956 1.0000 80 chr6:36856621-36856701 1.0000 80 chr2:10452149-10452229 1.0000 80 chr22:19762243-19762323 1.0000 80 chr10:5529052-5529132 1.0000 80 chr19:1812683-1812763 1.0000 80 chr1:3818135-3818215 1.0000 80 chr1:54739605-54739685 1.0000 80 chr19:18747366-18747446 1.0000 80 chr16:87339328-87339408 1.0000 80 chr19:50143541-50143621 1.0000 80 chr10:52070998-52071078 1.0000 80 chr1:1851070-1851150 1.0000 80 chr19:41076712-41076792 1.0000 80 chr1:179850151-179850231 1.0000 80 chr11:6947143-6947223 1.0000 80 chr15:66874174-66874254 1.0000 80 chr1:21934616-21934696 1.0000 80 chr9:130981168-130981248 1.0000 80 chr19:17690785-17690865 1.0000 80 chr19:1082596-1082676 1.0000 80 chr9:136213986-136214066 1.0000 80 chr10:52382009-52382089 1.0000 80 chr14:35822279-35822359 1.0000 80 chr19:3643117-3643197 1.0000 80 chr12:53748970-53749050 1.0000 80 chr1:27353743-27353823 1.0000 80 chr5:139041155-139041235 1.0000 80 chr7:129042148-129042228 1.0000 80 chr19:58838036-58838116 1.0000 80 chr7:105162915-105162995 1.0000 80 chr19:58891781-58891861 1.0000 80 chr2:106084942-106085022 1.0000 80 chr8:145622081-145622161 1.0000 80 chr2:70224615-70224695 1.0000 80 chr6:43027717-43027797 1.0000 80 chr11:72470034-72470114 1.0000 80 chr1:179849945-179850025 1.0000 80 chr19:6718940-6719020 1.0000 80 chr10:75758757-75758837 1.0000 80 chr17:74438808-74438888 1.0000 80 chr19:46002815-46002895 1.0000 80 chr17:40374068-40374148 1.0000 80 chr16:81110314-81110394 1.0000 80 chr9:137231355-137231435 1.0000 80 chr1:154981070-154981150 1.0000 80 chr7:128249321-128249401 1.0000 80 chr1:224301468-224301548 1.0000 80 chr2:27632952-27633032 1.0000 80 chr7:100883938-100884018 1.0000 80 chr11:75062056-75062136 1.0000 80 chr1:36181016-36181096 1.0000 80 chr1:32667560-32667640 1.0000 80 chr11:62379637-62379717 1.0000 80 chr1:32667292-32667372 1.0000 80 chr19:51153224-51153304 1.0000 80 chr3:9440061-9440141 1.0000 80 chr19:47200851-47200931 1.0000 80 chr9:139962623-139962703 1.0000 80 chr19:50096999-50097079 1.0000 80 chr1:11863776-11863856 1.0000 80 chr3:38045117-38045197 1.0000 80 chr9:115629740-115629820 1.0000 80 chr6:26384121-26384201 1.0000 80 chr19:3361929-3362009 1.0000 80 chr8:116660339-116660419 1.0000 80 chr7:106256920-106257000 1.0000 80 chr1:43312760-43312840 1.0000 80 chr1:36273225-36273305 1.0000 80 chr3:38178776-38178856 1.0000 80 chr9:127274239-127274319 1.0000 80 chr1:203765525-203765605 1.0000 80 chr22:19764056-19764136 1.0000 80 chr20:43514127-43514207 1.0000 80 chr2:158119885-158119965 1.0000 80 chr6:31678620-31678700 1.0000 80 chr1:47646581-47646661 1.0000 80 chr1:45480225-45480305 1.0000 80 chr20:60896077-60896157 1.0000 80 chr7:102617072-102617152 1.0000 80 chr8:38854081-38854161 1.0000 80 chr7:102617273-102617353 1.0000 80 chr22:20045865-20045945 1.0000 80 chr16:66637883-66637963 1.0000 80 chr19:51505982-51506062 1.0000 80 chr4:8119165-8119245 1.0000 80 chr22:17085699-17085779 1.0000 80 chr8:37644092-37644172 1.0000 80 chr1:211793599-211793679 1.0000 80 chr20:62573111-62573191 1.0000 80 chr19:48996324-48996404 1.0000 80 chr19:8590671-8590751 1.0000 80 chr9:130693868-130693948 1.0000 80 chr20:33858891-33858971 1.0000 80 chr18:9870513-9870593 1.0000 80 chr22:20009363-20009443 1.0000 80 chrX:70366175-70366255 1.0000 80 chr19:9929767-9929847 1.0000 80 chr10:102758574-10275865 1.0000 80 chr16:31147287-31147367 1.0000 80 chr21:46286572-46286652 1.0000 80 chr1:1370588-1370668 1.0000 80 chr19:17371925-17372005 1.0000 80 chr20:62184648-62184728 1.0000 80 chr22:19417757-19417837 1.0000 80 chr19:47164583-47164663 1.0000 80 chr1:36616613-36616693 1.0000 80 chr1:1690647-1690727 1.0000 80 chr11:12189932-12190012 1.0000 80 chr8:130595153-130595233 1.0000 80 chr22:19097748-19097828 1.0000 80 chr19:1174592-1174672 1.0000 80 chr7:75864565-75864645 1.0000 80 chr15:27333047-27333127 1.0000 80 chr1:27884064-27884144 1.0000 80 chr17:49012036-49012116 1.0000 80 chr17:27187567-27187647 1.0000 80 chr19:7936962-7937042 1.0000 80 chr15:44092472-44092552 1.0000 80 chr2:172963415-172963495 1.0000 80 chr19:48996124-48996204 1.0000 80 chr19:41109970-41110050 1.0000 80 chr19:10946533-10946613 1.0000 80 chr6:31940884-31940964 1.0000 80 chr4:79612749-79612829 1.0000 80 chr7:123368749-123368829 1.0000 80 chr6:37070057-37070137 1.0000 80 chr16:2530022-2530102 1.0000 80 chr10:104495146-10449522 1.0000 80 chr1:6408386-6408466 1.0000 80 chr1:167892647-167892727 1.0000 80 chr1:29651541-29651621 1.0000 80 chr19:41120150-41120230 1.0000 80 chr10:76994143-76994223 1.0000 80 chr3:72084212-72084292 1.0000 80 chr11:827697-827777 1.0000 80 chr19:42787437-42787517 1.0000 80 chr19:10675912-10675992 1.0000 80 chr1:167693321-167693401 1.0000 80 chr1:117368847-117368927 1.0000 80 chr1:23880817-23880897 1.0000 80 chr17:79790308-79790388 1.0000 80 chr22:38577262-38577342 1.0000 80 chr20:33464001-33464081 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_HDGF/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/HDGF.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.22 C 0.28 G 0.294 T 0.206 Background letter frequencies (from file dataset with add-one prior applied): A 0.22 C 0.28 G 0.294 T 0.206 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CCTCCYCY MEME-1 width = 8 sites = 58 llr = 463 E-value = 8.6e-017 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCTCCYCY MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::::1::: pos.-specific C 98:a9583 probability G :::::::: matrix T 12a::527 bits 2.3 * 2.1 * 1.8 ** 1.6 ** Relative 1.4 * *** Entropy 1.1 ******** (11.5 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCTCCCCT consensus TTC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCCYCY MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr20:33464001-33464081 30 1.50e-05 CATGGCTCTG CCTCCTCT CCTGTCACAA chr10:104495146-10449522 51 1.50e-05 cctccatgtc cctcctct ccctccatga chr19:48996324-48996404 38 1.50e-05 TTTCTCCAGG CCTCCTCT TGCCGCGCCA chr19:18747366-18747446 59 1.50e-05 CCTTGTCCCT CCTCCTCT TGCCCTGGGC chr1:54739605-54739685 10 1.50e-05 GGCGCCCCA CCTCCTCT CTAATCCTTC chr2:70224615-70224695 34 3.55e-05 CTCCTTCCTC CCTCCCCT GTGCAAAGTC chr21:45848437-45848517 49 3.55e-05 AGGTGTGGCT CCTCCCCT TAGGTCTGGC chr19:7670577-7670657 27 3.55e-05 AGGTCTGGCT CCTCCCCT CAAGCGCTAT chr19:7670797-7670877 15 3.55e-05 AGCCCTGGCT CCTCCCCT CAAGCTCTTC chr22:19947548-19947628 16 3.55e-05 GCTGTGGCCT CCTCCCCT CTGCTGCCTC chr19:3177169-3177249 34 3.55e-05 TAAGGTCATG CCTCCCCT CTCAGAACCT chr19:49646354-49646434 41 3.55e-05 CCCCCCTCAG CCTCCCCT CCACTCCTAA chr19:6767659-6767739 72 3.55e-05 GCCAGTGGCC CCTCCCCT T chr19:18990793-18990873 18 3.55e-05 TCACCAGGCC CCTCCCCT TCCTGGATCC chr4:4674942-4675022 40 3.55e-05 ACTAGCCTCT CCTCCCCT CAGGACCACG chr20:43514127-43514207 25 5.59e-05 tctccgccca cctcctcc tgggtccctc chr9:115629740-115629820 43 5.59e-05 cctcagaact cctcctcc ttcCTCAGAA chr17:38227241-38227321 73 5.59e-05 tgttcttccc cctcctcc chr6:30658544-30658624 39 5.59e-05 GCTCCACCTT CCTCCTCC CAGTTCATCC chrX:148620986-148621066 2 5.59e-05 T CCTCCTCC CAGCACTTAA chr19:56110415-56110495 70 5.59e-05 CCAGACTCTC CCTCCTCC ACG chr12:6723436-6723516 64 5.59e-05 CACTTTCCTA CCTCCTCC TTGGTCTGT chr4:3783208-3783288 20 5.59e-05 ACACGAAACT CCTCCTCC CACACAAAAC chr16:29889015-29889095 46 5.59e-05 CTGTCCACTC CCTCCTCC ATCACCATGA chr7:105162915-105162995 32 6.70e-05 GCAGCGATTG CCTCCTTT GGTGTTATAT chr17:27200520-27200600 12 6.70e-05 GCCACTCAGG CCTCCTTT TCCTGAAGGT chr19:10946533-10946613 58 1.06e-04 AGCACGGATT CCTCCCCC TTCCTCCTAA chr18:9870513-9870593 20 1.06e-04 GAATTCAGTC CCTCCCCC AGCTCTGCAC chr1:43312760-43312840 1 1.06e-04 . CTTCCTCT TCCCTGACCG chr19:51153224-51153304 25 1.06e-04 TTCCCCATTC CTTCCTCT CTGTCCCCGC chr11:6947143-6947223 14 1.06e-04 tattttctct cttcctct ctgtcccttt chr10:104495348-10449542 20 1.06e-04 TCATTGTCTT CTTCCTCT GCTTGAACAA chr19:50864694-50864774 48 1.06e-04 CCAGGAAGCC CCTCCCCC TCCTTGTGAC chr16:81110314-81110394 57 1.21e-04 CTATCAGGCT CCTCCCTT TATGCCATAA chr7:111079255-111079335 46 1.21e-04 TCTTTCCAAT CCTCCCTT CCAATCTCTA chr12:109125915-10912599 66 1.21e-04 CCTACCACCA CCTCCCTT GAGGACT chr1:38470319-38470399 29 1.21e-04 ATCCCCACCA CCTCCCTT TCTCTGTCTC chr10:5529052-5529132 6 1.36e-04 CTCTG CTTCCCCT CCCCACGTCC chr6:41169645-41169725 62 1.36e-04 CTCCGCAGTA CTTCCCCT CACCCACCTC chr7:100883938-100884018 41 1.48e-04 CCCTCGGAGT CCTCATCT GACACCGCTC chr1:154981070-154981150 9 1.48e-04 ttgctcct cctcatct ctgtcctcct chr22:19410161-19410241 55 1.48e-04 ATGGCACCTT CCTCATCT CCATGAGGCC chr1:29651541-29651621 10 1.90e-04 AACTCCGCC CCTCACCT CTGGGCTCTC chr16:84047806-84047886 72 1.90e-04 AGGCCACACC CCTCACCT C chr19:41120150-41120230 1 2.20e-04 . tctcccct cTTTGTATCC chr3:9440061-9440141 62 2.20e-04 GGGGCCGCGA TCTCCCCT CCGTAATCTT chr10:52382009-52382089 22 2.20e-04 CGCCCCGCCC TCTCCCCT TCTGCACAGG chrX:1571979-1572059 30 2.20e-04 GCCCCATTGA TCTCCCCT GAGACCACGC chr6:2921249-2921329 33 2.49e-04 CCTCAGTCCG CTTCCTTT CCCTAAGCTC chr8:144302029-144302109 72 2.49e-04 CCTAACCACG CCTCCCTC C chr9:136213986-136214066 28 2.96e-04 CCGCTCCAGA CCTCATCC CTGCACTGCG chr19:48996124-48996204 6 3.59e-04 cctgc cctcaccc taggtcccgc chr20:32581155-32581235 58 3.59e-04 GCCCACAGCA TCTCCTTT CAAGCGCTGT chr12:131925597-13192567 16 3.59e-04 TCCACCCTGA CCTCACCC CTGTGGTTTG chr9:130693868-130693948 71 3.99e-04 gtttatcacg tctccccc tg chr17:79790308-79790388 16 4.33e-04 CCTGTTGGCT CTTCCTTC ACGTCCCACT chr2:158119885-158119965 53 4.33e-04 CCAACTGTGG CTTCCTTC CACCTGGACC chr20:44539522-44539602 31 4.33e-04 ACTGGTCCTG CTTCCTTC TTGGCCCCCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCCYCY MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr20:33464001-33464081 1.5e-05 29_[+1]_43 chr10:104495146-10449522 1.5e-05 50_[+1]_22 chr19:48996324-48996404 1.5e-05 37_[+1]_35 chr19:18747366-18747446 1.5e-05 58_[+1]_14 chr1:54739605-54739685 1.5e-05 9_[+1]_63 chr2:70224615-70224695 3.5e-05 33_[+1]_39 chr21:45848437-45848517 3.5e-05 48_[+1]_24 chr19:7670577-7670657 3.5e-05 26_[+1]_46 chr19:7670797-7670877 3.5e-05 14_[+1]_58 chr22:19947548-19947628 3.5e-05 15_[+1]_57 chr19:3177169-3177249 3.5e-05 33_[+1]_39 chr19:49646354-49646434 3.5e-05 40_[+1]_32 chr19:6767659-6767739 3.5e-05 71_[+1]_1 chr19:18990793-18990873 3.5e-05 17_[+1]_55 chr4:4674942-4675022 3.5e-05 39_[+1]_33 chr20:43514127-43514207 5.6e-05 24_[+1]_48 chr9:115629740-115629820 5.6e-05 42_[+1]_30 chr17:38227241-38227321 5.6e-05 72_[+1] chr6:30658544-30658624 5.6e-05 38_[+1]_34 chrX:148620986-148621066 5.6e-05 1_[+1]_71 chr19:56110415-56110495 5.6e-05 69_[+1]_3 chr12:6723436-6723516 5.6e-05 63_[+1]_9 chr4:3783208-3783288 5.6e-05 19_[+1]_53 chr16:29889015-29889095 5.6e-05 45_[+1]_27 chr7:105162915-105162995 6.7e-05 31_[+1]_41 chr17:27200520-27200600 6.7e-05 11_[+1]_61 chr19:10946533-10946613 0.00011 57_[+1]_15 chr18:9870513-9870593 0.00011 19_[+1]_53 chr1:43312760-43312840 0.00011 [+1]_72 chr19:51153224-51153304 0.00011 24_[+1]_48 chr11:6947143-6947223 0.00011 13_[+1]_59 chr10:104495348-10449542 0.00011 19_[+1]_53 chr19:50864694-50864774 0.00011 47_[+1]_25 chr16:81110314-81110394 0.00012 56_[+1]_16 chr7:111079255-111079335 0.00012 45_[+1]_27 chr12:109125915-10912599 0.00012 65_[+1]_7 chr1:38470319-38470399 0.00012 28_[+1]_44 chr10:5529052-5529132 0.00014 5_[+1]_67 chr6:41169645-41169725 0.00014 61_[+1]_11 chr7:100883938-100884018 0.00015 40_[+1]_32 chr1:154981070-154981150 0.00015 8_[+1]_64 chr22:19410161-19410241 0.00015 54_[+1]_18 chr1:29651541-29651621 0.00019 9_[+1]_63 chr16:84047806-84047886 0.00019 71_[+1]_1 chr19:41120150-41120230 0.00022 [+1]_72 chr3:9440061-9440141 0.00022 61_[+1]_11 chr10:52382009-52382089 0.00022 21_[+1]_51 chrX:1571979-1572059 0.00022 29_[+1]_43 chr6:2921249-2921329 0.00025 32_[+1]_40 chr8:144302029-144302109 0.00025 71_[+1]_1 chr9:136213986-136214066 0.0003 27_[+1]_45 chr19:48996124-48996204 0.00036 5_[+1]_67 chr20:32581155-32581235 0.00036 57_[+1]_15 chr12:131925597-13192567 0.00036 15_[+1]_57 chr9:130693868-130693948 0.0004 70_[+1]_2 chr17:79790308-79790388 0.00043 15_[+1]_57 chr2:158119885-158119965 0.00043 52_[+1]_20 chr20:44539522-44539602 0.00043 30_[+1]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCCYCY MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCTCCYCY width=8 seqs=58 chr20:33464001-33464081 ( 30) CCTCCTCT 1 chr10:104495146-10449522 ( 51) CCTCCTCT 1 chr19:48996324-48996404 ( 38) CCTCCTCT 1 chr19:18747366-18747446 ( 59) CCTCCTCT 1 chr1:54739605-54739685 ( 10) CCTCCTCT 1 chr2:70224615-70224695 ( 34) CCTCCCCT 1 chr21:45848437-45848517 ( 49) CCTCCCCT 1 chr19:7670577-7670657 ( 27) CCTCCCCT 1 chr19:7670797-7670877 ( 15) CCTCCCCT 1 chr22:19947548-19947628 ( 16) CCTCCCCT 1 chr19:3177169-3177249 ( 34) CCTCCCCT 1 chr19:49646354-49646434 ( 41) CCTCCCCT 1 chr19:6767659-6767739 ( 72) CCTCCCCT 1 chr19:18990793-18990873 ( 18) CCTCCCCT 1 chr4:4674942-4675022 ( 40) CCTCCCCT 1 chr20:43514127-43514207 ( 25) CCTCCTCC 1 chr9:115629740-115629820 ( 43) CCTCCTCC 1 chr17:38227241-38227321 ( 73) CCTCCTCC 1 chr6:30658544-30658624 ( 39) CCTCCTCC 1 chrX:148620986-148621066 ( 2) CCTCCTCC 1 chr19:56110415-56110495 ( 70) CCTCCTCC 1 chr12:6723436-6723516 ( 64) CCTCCTCC 1 chr4:3783208-3783288 ( 20) CCTCCTCC 1 chr16:29889015-29889095 ( 46) CCTCCTCC 1 chr7:105162915-105162995 ( 32) CCTCCTTT 1 chr17:27200520-27200600 ( 12) CCTCCTTT 1 chr19:10946533-10946613 ( 58) CCTCCCCC 1 chr18:9870513-9870593 ( 20) CCTCCCCC 1 chr1:43312760-43312840 ( 1) CTTCCTCT 1 chr19:51153224-51153304 ( 25) CTTCCTCT 1 chr11:6947143-6947223 ( 14) CTTCCTCT 1 chr10:104495348-10449542 ( 20) CTTCCTCT 1 chr19:50864694-50864774 ( 48) CCTCCCCC 1 chr16:81110314-81110394 ( 57) CCTCCCTT 1 chr7:111079255-111079335 ( 46) CCTCCCTT 1 chr12:109125915-10912599 ( 66) CCTCCCTT 1 chr1:38470319-38470399 ( 29) CCTCCCTT 1 chr10:5529052-5529132 ( 6) CTTCCCCT 1 chr6:41169645-41169725 ( 62) CTTCCCCT 1 chr7:100883938-100884018 ( 41) CCTCATCT 1 chr1:154981070-154981150 ( 9) CCTCATCT 1 chr22:19410161-19410241 ( 55) CCTCATCT 1 chr1:29651541-29651621 ( 10) CCTCACCT 1 chr16:84047806-84047886 ( 72) CCTCACCT 1 chr19:41120150-41120230 ( 1) TCTCCCCT 1 chr3:9440061-9440141 ( 62) TCTCCCCT 1 chr10:52382009-52382089 ( 22) TCTCCCCT 1 chrX:1571979-1572059 ( 30) TCTCCCCT 1 chr6:2921249-2921329 ( 33) CTTCCTTT 1 chr8:144302029-144302109 ( 72) CCTCCCTC 1 chr9:136213986-136214066 ( 28) CCTCATCC 1 chr19:48996124-48996204 ( 6) CCTCACCC 1 chr20:32581155-32581235 ( 58) TCTCCTTT 1 chr12:131925597-13192567 ( 16) CCTCACCC 1 chr9:130693868-130693948 ( 71) TCTCCCCC 1 chr17:79790308-79790388 ( 16) CTTCCTTC 1 chr2:158119885-158119965 ( 53) CTTCCTTC 1 chr20:44539522-44539602 ( 31) CTTCCTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCCYCY MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.4321 E= 8.6e-017 -1250 168 -1250 -99 -1250 157 -1250 -26 -1250 -1250 -1250 228 -1250 184 -1250 -1250 -67 162 -1250 -1250 -1250 84 -1250 128 -1250 150 -1250 0 -1250 30 -1250 167 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCCYCY MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 58 E= 8.6e-017 0.000000 0.896552 0.000000 0.103448 0.000000 0.827586 0.000000 0.172414 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.137931 0.862069 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.793103 0.000000 0.206897 0.000000 0.344828 0.000000 0.655172 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCCYCY MEME-1 regular expression -------------------------------------------------------------------------------- CCTCC[CT][CT][TC] -------------------------------------------------------------------------------- Time 5.01 secs. ******************************************************************************** ******************************************************************************** MOTIF RTGTGTGT MEME-2 width = 8 sites = 22 llr = 208 E-value = 1.5e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif RTGTGTGT MEME-2 Description -------------------------------------------------------------------------------- Simplified A 3::::::: pos.-specific C 1::::::: probability G 5:a3a:a: matrix T 1a:7:a:a bits 2.3 * * * 2.1 * * * 1.8 ** **** 1.6 ** **** Relative 1.4 ******* Entropy 1.1 ******* (13.7 bits) 0.9 ******* 0.7 ******* 0.5 ******* 0.2 ******** 0.0 -------- Multilevel GTGTGTGT consensus A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGTGTGT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr15:27333047-27333127 65 1.35e-05 gtgctgtgga gtgtgtgt gtgcatgt chr16:31147287-31147367 35 1.35e-05 tggtatgtgt gtgtgtgt gcatgtacag chrX:70366175-70366255 46 1.35e-05 gtgggtgtgc gtgtgtgt gcgtgtgtgt chr16:66637883-66637963 60 1.35e-05 gagtgtgtgt gtgtgtgt gtgtgAGAGA chr3:38045117-38045197 13 1.35e-05 GGTGCCCAGT GTGTGTGT ATACAGTGTC chr9:137231355-137231435 30 1.35e-05 gtgtgagccc gtgtgtgt gtgAGTCTCT chr17:40374068-40374148 25 1.35e-05 gctgtgtgtg gtgtgtgt gtgctgtgtg chr20:4018762-4018842 21 1.35e-05 gtgcatgtgc gtgtgtgt CTGGGGGAAG chr19:46170988-46171068 17 1.35e-05 GAGCGTTACT GTGTGTGT GCAGGAGTCC chr6:26384121-26384201 29 2.35e-05 TCAGGTAGGG ATGTGTGT CACTTGCTGC chr11:75062056-75062136 6 2.35e-05 GGGTG ATGTGTGT GCCAGCAAGA chr11:72470034-72470114 13 2.35e-05 gtgtatgcct atgtgtgt atgtatatac chr6:168241328-168241408 26 2.35e-05 AGAGTACTAT ATGTGTGT CTGTGTGTAC chr11:119227435-11922751 15 3.29e-05 CTTGTCAGGT TTGTGTGT TGTTGTTGTT chr19:6161473-6161553 29 5.22e-05 TGTGAGGAAA GTGGGTGT GACCTTTCAA chr4:6597771-6597851 8 5.22e-05 AGTGACT GTGGGTGT GGCCACATCT chr10:102758574-10275865 40 6.50e-05 GACACCGTGT CTGTGTGT GAGGTGGACT chr1:36181016-36181096 12 6.50e-05 GATAAATTAG CTGTGTGT ACACATGTGC chr6:31678620-31678700 60 7.93e-05 GGCAAGGAGG ATGGGTGT GCACAGGGAG chr12:131709123-13170920 59 7.93e-05 TGGCCAAGCC ATGGGTGT GGAGATAGGG chr3:72084212-72084292 35 9.28e-05 AGGTGCTGGG TTGGGTGT GGCCAATGGG chr1:36273225-36273305 48 9.28e-05 GGACGCGCAG TTGGGTGT GTGGTGCTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGTGTGT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:27333047-27333127 1.3e-05 64_[+2]_8 chr16:31147287-31147367 1.3e-05 34_[+2]_38 chrX:70366175-70366255 1.3e-05 45_[+2]_27 chr16:66637883-66637963 1.3e-05 59_[+2]_13 chr3:38045117-38045197 1.3e-05 12_[+2]_60 chr9:137231355-137231435 1.3e-05 29_[+2]_43 chr17:40374068-40374148 1.3e-05 24_[+2]_48 chr20:4018762-4018842 1.3e-05 20_[+2]_52 chr19:46170988-46171068 1.3e-05 16_[+2]_56 chr6:26384121-26384201 2.4e-05 28_[+2]_44 chr11:75062056-75062136 2.4e-05 5_[+2]_67 chr11:72470034-72470114 2.4e-05 12_[+2]_60 chr6:168241328-168241408 2.4e-05 25_[+2]_47 chr11:119227435-11922751 3.3e-05 14_[+2]_58 chr19:6161473-6161553 5.2e-05 28_[+2]_44 chr4:6597771-6597851 5.2e-05 7_[+2]_65 chr10:102758574-10275865 6.5e-05 39_[+2]_33 chr1:36181016-36181096 6.5e-05 11_[+2]_61 chr6:31678620-31678700 7.9e-05 59_[+2]_13 chr12:131709123-13170920 7.9e-05 58_[+2]_14 chr3:72084212-72084292 9.3e-05 34_[+2]_38 chr1:36273225-36273305 9.3e-05 47_[+2]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGTGTGT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RTGTGTGT width=8 seqs=22 chr15:27333047-27333127 ( 65) GTGTGTGT 1 chr16:31147287-31147367 ( 35) GTGTGTGT 1 chrX:70366175-70366255 ( 46) GTGTGTGT 1 chr16:66637883-66637963 ( 60) GTGTGTGT 1 chr3:38045117-38045197 ( 13) GTGTGTGT 1 chr9:137231355-137231435 ( 30) GTGTGTGT 1 chr17:40374068-40374148 ( 25) GTGTGTGT 1 chr20:4018762-4018842 ( 21) GTGTGTGT 1 chr19:46170988-46171068 ( 17) GTGTGTGT 1 chr6:26384121-26384201 ( 29) ATGTGTGT 1 chr11:75062056-75062136 ( 6) ATGTGTGT 1 chr11:72470034-72470114 ( 13) ATGTGTGT 1 chr6:168241328-168241408 ( 26) ATGTGTGT 1 chr11:119227435-11922751 ( 15) TTGTGTGT 1 chr19:6161473-6161553 ( 29) GTGGGTGT 1 chr4:6597771-6597851 ( 8) GTGGGTGT 1 chr10:102758574-10275865 ( 40) CTGTGTGT 1 chr1:36181016-36181096 ( 12) CTGTGTGT 1 chr6:31678620-31678700 ( 60) ATGGGTGT 1 chr12:131709123-13170920 ( 59) ATGGGTGT 1 chr3:72084212-72084292 ( 35) TTGGGTGT 1 chr1:36273225-36273305 ( 48) TTGGGTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGTGTGT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.5702 E= 1.5e-004 31 -162 77 -60 -1110 -1110 -1110 228 -1110 -1110 177 -1110 -1110 -1110 -11 182 -1110 -1110 177 -1110 -1110 -1110 -1110 228 -1110 -1110 177 -1110 -1110 -1110 -1110 228 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGTGTGT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 1.5e-004 0.272727 0.090909 0.500000 0.136364 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.272727 0.727273 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGTGTGT MEME-2 regular expression -------------------------------------------------------------------------------- [GA]TG[TG]GTGT -------------------------------------------------------------------------------- Time 8.78 secs. ******************************************************************************** ******************************************************************************** MOTIF CCACMCAC MEME-3 width = 8 sites = 48 llr = 375 E-value = 9.9e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCACMCAC MEME-3 Description -------------------------------------------------------------------------------- Simplified A 3:6:4:7: pos.-specific C 7a:a5a:a probability G ::1::::: matrix T ::3:1:3: bits 2.3 2.1 1.8 * * * * 1.6 * * * * Relative 1.4 * * *** Entropy 1.1 ** * *** (11.3 bits) 0.9 **** *** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCACCCAC consensus A T A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACMCAC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr4:8119165-8119245 47 2.33e-05 CACTAAGACT CCACCCAC TGCAGACTCC chr19:47200851-47200931 52 2.33e-05 agctccagcc ccacccac ctagccccgc chr19:3643117-3643197 22 2.33e-05 ATACGATGCT CCACCCAC ATGCACAGCG chr9:130981168-130981248 47 2.33e-05 TTTCCTAGTC CCACCCAC CTGCCACCCT chrX:148620986-148621066 26 2.33e-05 TTAACCAGTT CCACCCAC AGCTCTTTCC chr19:18990793-18990873 34 2.33e-05 CTTCCTGGAT CCACCCAC CTCACCTGGC chr19:1063020-1063100 30 2.33e-05 CATGCTGTCT CCACCCAC ACCATGGCCC chr1:117368847-117368927 18 4.16e-05 ACTTAGCTCC CCACACAC CCTGGCCCTC chr17:49012036-49012116 25 4.16e-05 GCACGCATAT CCACACAC ATGAGCCGGA chr11:12189932-12190012 63 4.16e-05 catacacaca ccacacac acgtacatac chr1:211793599-211793679 38 4.16e-05 acgcacacac ccacacac acattcacac chr5:139041155-139041235 45 4.16e-05 CCCATTGGCC CCACACAC TGGGGCCTGA chr17:27039621-27039701 45 4.16e-05 AATATACTCA CCACACAC AGACTAATAC chr9:115629740-115629820 63 6.35e-05 cCTCAGAACT CCTCCCAC CTCCTCAGAA chr1:1851070-1851150 73 6.35e-05 AGCGCAATCC CCTCCCAC chr19:7670577-7670657 8 6.35e-05 CCTAGTT CCTCCCAC GAGGTCTGGC chr22:19947548-19947628 30 6.35e-05 CCCTCTGCTG CCTCCCAC TAGGCCCTGG chr4:3783208-3783288 53 6.35e-05 CCCACGTCTT CCTCCCAC ACGAAACTCC chr19:58838036-58838116 63 9.90e-05 AGCCCTCAGC CCTCACAC AGCCGCCCTC chr2:43446597-43446677 63 9.90e-05 AAACCTCTGC ACACCCAC AGACAGAAAA chr17:79790308-79790388 36 1.35e-04 GTCCCACTTC CCACCCTC TCTACACGTT chr1:6408386-6408466 28 1.35e-04 acacacacgc acacacac acaGCTTCCA chr17:27187567-27187647 5 1.35e-04 GTGA CCACCCTC TACTGACCCT chr21:46286572-46286652 34 1.35e-04 acacacacac acacacac acacacaaac chr19:3361929-3362009 30 1.35e-04 gacagacgtc acacacac aggcgtgcac chr14:35822279-35822359 51 1.35e-04 atgcactcat acacacac tcacatacac chr20:31063975-31064055 51 1.35e-04 acacacacac acacacac acacacGTTC chr20:23640755-23640835 50 1.35e-04 acacactcat acacacac aggcatacac chr4:79612749-79612829 62 1.52e-04 tcagcgaact ccacactc agggaccaag chr7:102617072-102617152 13 1.52e-04 tcgcaaaaca ccacactc ccgtccgtcc chr6:20213876-20213956 6 1.70e-04 CTCTA Ccactcac aagcaaaccc chr1:27884064-27884144 35 1.87e-04 TGTGCACATC ACTCCCAC TGTGCACCCA chr19:48996324-48996404 65 2.21e-04 ACAGACTTGG CCTCCCTC AGGCCCGG chr8:144302029-144302109 31 2.21e-04 CCTAACCACG CCTCCCTC CTGACTCAAC chr16:84047806-84047886 13 2.54e-04 CTGTGTAGCC ACACCCTC ACCTCTGAAA chr10:81159338-81159418 7 2.83e-04 tcaagg acacactc agtaaatctg chr2:47141062-47141142 32 2.83e-04 CAGTCTGTAG CCTCTCAC ACTCATTTGA chr18:9870513-9870593 67 3.13e-04 TTTCCACTCT CCACTCTC AGAGGG chr1:27353743-27353823 3 3.13e-04 cc ccactctc caggattttt chr20:32581155-32581235 46 3.44e-04 CCATTTAGCC CCGCCCAC AGCATCTCCT chr19:50249559-50249639 44 3.44e-04 ACCCATGTCA CCGCCCAC CTCAGCTACT chr19:6767659-6767739 28 3.44e-04 TCCATAGACC CCGCCCAC TAGGGGAGCA chr16:29889015-29889095 29 3.44e-04 ATTACTAACT CCGCCCAC TGTCCACTCC chr19:1174592-1174672 38 3.85e-04 TTAAACTGAG ACTCCCTC AAAAGCTACT chr19:47164583-47164663 17 3.97e-04 GCAACTGCCT ACTCACTC CGCTCGCCAC chr10:75758757-75758837 32 4.10e-04 CTCCTCTGGC ACTCTCAC ACCTTTATGC chr19:41120150-41120230 58 4.25e-04 GACCACCCGA CCTCTCTC CTCAGACGTG chr6:30658544-30658624 6 5.11e-04 AAGCC CCGCCCTC AATCCCTCTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACMCAC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:8119165-8119245 2.3e-05 46_[+3]_26 chr19:47200851-47200931 2.3e-05 51_[+3]_21 chr19:3643117-3643197 2.3e-05 21_[+3]_51 chr9:130981168-130981248 2.3e-05 46_[+3]_26 chrX:148620986-148621066 2.3e-05 25_[+3]_47 chr19:18990793-18990873 2.3e-05 33_[+3]_39 chr19:1063020-1063100 2.3e-05 29_[+3]_43 chr1:117368847-117368927 4.2e-05 17_[+3]_55 chr17:49012036-49012116 4.2e-05 24_[+3]_48 chr11:12189932-12190012 4.2e-05 62_[+3]_10 chr1:211793599-211793679 4.2e-05 37_[+3]_35 chr5:139041155-139041235 4.2e-05 44_[+3]_28 chr17:27039621-27039701 4.2e-05 44_[+3]_28 chr9:115629740-115629820 6.3e-05 62_[+3]_10 chr1:1851070-1851150 6.3e-05 72_[+3] chr19:7670577-7670657 6.3e-05 7_[+3]_65 chr22:19947548-19947628 6.3e-05 29_[+3]_43 chr4:3783208-3783288 6.3e-05 52_[+3]_20 chr19:58838036-58838116 9.9e-05 62_[+3]_10 chr2:43446597-43446677 9.9e-05 62_[+3]_10 chr17:79790308-79790388 0.00014 35_[+3]_37 chr1:6408386-6408466 0.00014 27_[+3]_45 chr17:27187567-27187647 0.00014 4_[+3]_68 chr21:46286572-46286652 0.00014 33_[+3]_39 chr19:3361929-3362009 0.00014 29_[+3]_43 chr14:35822279-35822359 0.00014 50_[+3]_22 chr20:31063975-31064055 0.00014 50_[+3]_22 chr20:23640755-23640835 0.00014 49_[+3]_23 chr4:79612749-79612829 0.00015 61_[+3]_11 chr7:102617072-102617152 0.00015 12_[+3]_60 chr6:20213876-20213956 0.00017 5_[+3]_67 chr1:27884064-27884144 0.00019 34_[+3]_38 chr19:48996324-48996404 0.00022 64_[+3]_8 chr8:144302029-144302109 0.00022 30_[+3]_42 chr16:84047806-84047886 0.00025 12_[+3]_60 chr10:81159338-81159418 0.00028 6_[+3]_66 chr2:47141062-47141142 0.00028 31_[+3]_41 chr18:9870513-9870593 0.00031 66_[+3]_6 chr1:27353743-27353823 0.00031 2_[+3]_70 chr20:32581155-32581235 0.00034 45_[+3]_27 chr19:50249559-50249639 0.00034 43_[+3]_29 chr19:6767659-6767739 0.00034 27_[+3]_45 chr16:29889015-29889095 0.00034 28_[+3]_44 chr19:1174592-1174672 0.00038 37_[+3]_35 chr19:47164583-47164663 0.0004 16_[+3]_56 chr10:75758757-75758837 0.00041 31_[+3]_41 chr19:41120150-41120230 0.00042 57_[+3]_15 chr6:30658544-30658624 0.00051 5_[+3]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACMCAC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCACMCAC width=8 seqs=48 chr4:8119165-8119245 ( 47) CCACCCAC 1 chr19:47200851-47200931 ( 52) CCACCCAC 1 chr19:3643117-3643197 ( 22) CCACCCAC 1 chr9:130981168-130981248 ( 47) CCACCCAC 1 chrX:148620986-148621066 ( 26) CCACCCAC 1 chr19:18990793-18990873 ( 34) CCACCCAC 1 chr19:1063020-1063100 ( 30) CCACCCAC 1 chr1:117368847-117368927 ( 18) CCACACAC 1 chr17:49012036-49012116 ( 25) CCACACAC 1 chr11:12189932-12190012 ( 63) CCACACAC 1 chr1:211793599-211793679 ( 38) CCACACAC 1 chr5:139041155-139041235 ( 45) CCACACAC 1 chr17:27039621-27039701 ( 45) CCACACAC 1 chr9:115629740-115629820 ( 63) CCTCCCAC 1 chr1:1851070-1851150 ( 73) CCTCCCAC 1 chr19:7670577-7670657 ( 8) CCTCCCAC 1 chr22:19947548-19947628 ( 30) CCTCCCAC 1 chr4:3783208-3783288 ( 53) CCTCCCAC 1 chr19:58838036-58838116 ( 63) CCTCACAC 1 chr2:43446597-43446677 ( 63) ACACCCAC 1 chr17:79790308-79790388 ( 36) CCACCCTC 1 chr1:6408386-6408466 ( 28) ACACACAC 1 chr17:27187567-27187647 ( 5) CCACCCTC 1 chr21:46286572-46286652 ( 34) ACACACAC 1 chr19:3361929-3362009 ( 30) ACACACAC 1 chr14:35822279-35822359 ( 51) ACACACAC 1 chr20:31063975-31064055 ( 51) ACACACAC 1 chr20:23640755-23640835 ( 50) ACACACAC 1 chr4:79612749-79612829 ( 62) CCACACTC 1 chr7:102617072-102617152 ( 13) CCACACTC 1 chr6:20213876-20213956 ( 6) CCACTCAC 1 chr1:27884064-27884144 ( 35) ACTCCCAC 1 chr19:48996324-48996404 ( 65) CCTCCCTC 1 chr8:144302029-144302109 ( 31) CCTCCCTC 1 chr16:84047806-84047886 ( 13) ACACCCTC 1 chr10:81159338-81159418 ( 7) ACACACTC 1 chr2:47141062-47141142 ( 32) CCTCTCAC 1 chr18:9870513-9870593 ( 67) CCACTCTC 1 chr1:27353743-27353823 ( 3) CCACTCTC 1 chr20:32581155-32581235 ( 46) CCGCCCAC 1 chr19:50249559-50249639 ( 44) CCGCCCAC 1 chr19:6767659-6767739 ( 28) CCGCCCAC 1 chr16:29889015-29889095 ( 29) CCGCCCAC 1 chr19:1174592-1174672 ( 38) ACTCCCTC 1 chr19:47164583-47164663 ( 17) ACTCACTC 1 chr10:75758757-75758837 ( 32) ACTCTCAC 1 chr19:41120150-41120230 ( 58) CCTCTCTC 1 chr6:30658544-30658624 ( 6) CCGCCCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACMCAC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1543 E= 9.9e-004 30 138 -1223 -1223 -1223 184 -1223 -1223 146 -1223 -150 50 -1223 184 -1223 -1223 69 90 -1223 -72 -1223 184 -1223 -1223 169 -1223 -1223 50 -1223 184 -1223 -1223 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACMCAC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 48 E= 9.9e-004 0.270833 0.729167 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.604167 0.000000 0.104167 0.291667 0.000000 1.000000 0.000000 0.000000 0.354167 0.520833 0.000000 0.125000 0.000000 1.000000 0.000000 0.000000 0.708333 0.000000 0.000000 0.291667 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACMCAC MEME-3 regular expression -------------------------------------------------------------------------------- [CA]C[AT]C[CA]C[AT]C -------------------------------------------------------------------------------- Time 12.50 secs. ******************************************************************************** ******************************************************************************** MOTIF GGHGGGGC MEME-4 width = 8 sites = 41 llr = 343 E-value = 7.2e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGHGGGGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::2::2:: pos.-specific C ::5::::a probability G aa:aa8a: matrix T ::3::::: bits 2.3 2.1 1.8 ** * ** 1.6 ** ** ** Relative 1.4 ** ** ** Entropy 1.1 ** ***** (12.1 bits) 0.9 ** ***** 0.7 ** ***** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGCGGGGC consensus T sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGHGGGGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr10:76994143-76994223 7 5.06e-05 GCGGGA GGCGGGGC CTCGGAGGGA chr19:9929767-9929847 28 5.06e-05 GAAGCTCGGA GGCGGGGC TAGAGACGAG chr19:51505982-51506062 3 5.06e-05 GA GGCGGGGC CACAAGGGGT chr8:38854081-38854161 65 5.06e-05 CGAGCAGACG GGCGGGGC TACTCCGC chr19:1082596-1082676 5 5.06e-05 GCAG GGCGGGGC GCGCGTGGCC chr19:50143541-50143621 35 5.06e-05 TTCCGAATGA GGCGGGGC TATGCTAATG chr19:1812683-1812763 65 5.06e-05 AAAGGAGGaa ggcggggc cgcgcaga chr4:3957545-3957625 37 5.06e-05 CAGGTCTTAG GGCGGGGC TAAGGTCAGA chr11:6256185-6256265 73 5.06e-05 AGATCAGAAG GGCGGGGC chr19:6516140-6516220 62 5.06e-05 AGGGGAAGTG GGCGGGGC CTGGGGAGAA chr12:131709327-13170940 48 5.06e-05 AGGCCATAGG GGCGGGGC CACATTGGAG chr19:38997698-38997778 57 5.06e-05 TGGACACAGA GGCGGGGC CAGATGGGGA chr9:136113895-136113975 61 5.06e-05 gagcggggga ggcggggc cgagaagggc chr17:39823679-39823759 62 5.06e-05 ttacagggca ggcggggc tggggcaaac chr17:76136572-76136652 46 5.06e-05 GTGCGTTGGG GGCGGGGC CCTTGGAGGT chr8:11314196-11314276 50 5.06e-05 AAGAGACATG GGCGGGGC TGGGTGAAGG chr19:12951415-12951495 61 5.06e-05 TTGGATAAGG GGCGGGGC CATGCTTGTG chr19:41076712-41076792 45 8.79e-05 GGCGGTAGTA GGTGGGGC CAGAGCTGGG chr16:1393092-1393172 54 8.79e-05 GTGCTGAGTA GGTGGGGC TGCGCTGATT chr19:6161679-6161759 3 8.79e-05 TG GGTGGGGC TTTGCAAAGG chr19:1455707-1455787 62 8.79e-05 TCAGCAGGTG GGTGGGGC CTAGAAGGAC chr19:6161473-6161553 9 8.79e-05 AGGAAGTG GGTGGGGC CTTGTGAGGA chr19:17320545-17320625 9 8.79e-05 ACCTCTTT GGTGGGGC GGAGCCTGGT chr10:3215392-3215472 26 8.79e-05 TGCTGTGTTG GGTGGGGC TGTGCAAGTG chr12:131555667-13155574 25 8.79e-05 tgtgcaagga ggtggggc taagtgaaag chr19:41109970-41110050 66 1.28e-04 AGGTGGGGTG GGAGGGGC GTGAACA chr19:7936962-7937042 44 1.28e-04 AGAGGGAGAA GGAGGGGC TAGAGGAAGG chr8:145596476-145596556 50 1.28e-04 TGTGGGAGGA GGAGGGGC CCCTTGTGGG chr19:50215727-50215807 40 1.28e-04 cgtggtcaga ggaggggc gtggtccgag chr19:17650570-17650650 33 1.28e-04 GCCTGGGCTG GGAGGGGC GAGGCGATGC chr19:6718740-6718820 53 1.28e-04 ACTTCGAGGG GGAGGGGC TTGGAAAAGG chr19:46002815-46002895 24 1.66e-04 AAAATACAGG GGCGGAGC CTGAGGGATG chr7:75864565-75864645 5 1.93e-04 GGCG GGTGGAGC TCAAGTGCAT chr1:36616613-36616693 34 1.93e-04 AGAGAGTGGA GGTGGAGC CTTTCCCTGC chr19:36361022-36361102 11 1.93e-04 TGGGGAAAGG GGTGGAGC CCAATGAGAG chr8:130595153-130595233 73 2.23e-04 tgtcagggtg ggaggagc chr2:27632952-27633032 66 2.23e-04 AAGGATGGGA GGAGGAGC TGTTTCT chr10:23384071-23384151 62 2.23e-04 gcagggcgag ggaGGAGC AGGAGTGGGA chr19:47931533-47931613 26 2.23e-04 CGTAGCAAGT GGAGGAGC TTGGCTGATG chr1:1851269-1851349 39 2.59e-04 TGCTGGTCTG GGCGTGGC CCGGGGACCC chr4:6597771-6597851 56 2.85e-04 AGTCAAGTTG GGTGTGGC TCTGTCCAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGHGGGGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:76994143-76994223 5.1e-05 6_[+4]_66 chr19:9929767-9929847 5.1e-05 27_[+4]_45 chr19:51505982-51506062 5.1e-05 2_[+4]_70 chr8:38854081-38854161 5.1e-05 64_[+4]_8 chr19:1082596-1082676 5.1e-05 4_[+4]_68 chr19:50143541-50143621 5.1e-05 34_[+4]_38 chr19:1812683-1812763 5.1e-05 64_[+4]_8 chr4:3957545-3957625 5.1e-05 36_[+4]_36 chr11:6256185-6256265 5.1e-05 72_[+4] chr19:6516140-6516220 5.1e-05 61_[+4]_11 chr12:131709327-13170940 5.1e-05 47_[+4]_25 chr19:38997698-38997778 5.1e-05 56_[+4]_16 chr9:136113895-136113975 5.1e-05 60_[+4]_12 chr17:39823679-39823759 5.1e-05 61_[+4]_11 chr17:76136572-76136652 5.1e-05 45_[+4]_27 chr8:11314196-11314276 5.1e-05 49_[+4]_23 chr19:12951415-12951495 5.1e-05 60_[+4]_12 chr19:41076712-41076792 8.8e-05 44_[+4]_28 chr16:1393092-1393172 8.8e-05 53_[+4]_19 chr19:6161679-6161759 8.8e-05 2_[+4]_70 chr19:1455707-1455787 8.8e-05 61_[+4]_11 chr19:6161473-6161553 8.8e-05 8_[+4]_64 chr19:17320545-17320625 8.8e-05 8_[+4]_64 chr10:3215392-3215472 8.8e-05 25_[+4]_47 chr12:131555667-13155574 8.8e-05 24_[+4]_48 chr19:41109970-41110050 0.00013 65_[+4]_7 chr19:7936962-7937042 0.00013 43_[+4]_29 chr8:145596476-145596556 0.00013 49_[+4]_23 chr19:50215727-50215807 0.00013 39_[+4]_33 chr19:17650570-17650650 0.00013 32_[+4]_40 chr19:6718740-6718820 0.00013 52_[+4]_20 chr19:46002815-46002895 0.00017 23_[+4]_49 chr7:75864565-75864645 0.00019 4_[+4]_68 chr1:36616613-36616693 0.00019 33_[+4]_39 chr19:36361022-36361102 0.00019 10_[+4]_62 chr8:130595153-130595233 0.00022 72_[+4] chr2:27632952-27633032 0.00022 65_[+4]_7 chr10:23384071-23384151 0.00022 61_[+4]_11 chr19:47931533-47931613 0.00022 25_[+4]_47 chr1:1851269-1851349 0.00026 38_[+4]_34 chr4:6597771-6597851 0.00028 55_[+4]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGHGGGGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGHGGGGC width=8 seqs=41 chr10:76994143-76994223 ( 7) GGCGGGGC 1 chr19:9929767-9929847 ( 28) GGCGGGGC 1 chr19:51505982-51506062 ( 3) GGCGGGGC 1 chr8:38854081-38854161 ( 65) GGCGGGGC 1 chr19:1082596-1082676 ( 5) GGCGGGGC 1 chr19:50143541-50143621 ( 35) GGCGGGGC 1 chr19:1812683-1812763 ( 65) GGCGGGGC 1 chr4:3957545-3957625 ( 37) GGCGGGGC 1 chr11:6256185-6256265 ( 73) GGCGGGGC 1 chr19:6516140-6516220 ( 62) GGCGGGGC 1 chr12:131709327-13170940 ( 48) GGCGGGGC 1 chr19:38997698-38997778 ( 57) GGCGGGGC 1 chr9:136113895-136113975 ( 61) GGCGGGGC 1 chr17:39823679-39823759 ( 62) GGCGGGGC 1 chr17:76136572-76136652 ( 46) GGCGGGGC 1 chr8:11314196-11314276 ( 50) GGCGGGGC 1 chr19:12951415-12951495 ( 61) GGCGGGGC 1 chr19:41076712-41076792 ( 45) GGTGGGGC 1 chr16:1393092-1393172 ( 54) GGTGGGGC 1 chr19:6161679-6161759 ( 3) GGTGGGGC 1 chr19:1455707-1455787 ( 62) GGTGGGGC 1 chr19:6161473-6161553 ( 9) GGTGGGGC 1 chr19:17320545-17320625 ( 9) GGTGGGGC 1 chr10:3215392-3215472 ( 26) GGTGGGGC 1 chr12:131555667-13155574 ( 25) GGTGGGGC 1 chr19:41109970-41110050 ( 66) GGAGGGGC 1 chr19:7936962-7937042 ( 44) GGAGGGGC 1 chr8:145596476-145596556 ( 50) GGAGGGGC 1 chr19:50215727-50215807 ( 40) GGAGGGGC 1 chr19:17650570-17650650 ( 33) GGAGGGGC 1 chr19:6718740-6718820 ( 53) GGAGGGGC 1 chr19:46002815-46002895 ( 24) GGCGGAGC 1 chr7:75864565-75864645 ( 5) GGTGGAGC 1 chr1:36616613-36616693 ( 34) GGTGGAGC 1 chr19:36361022-36361102 ( 11) GGTGGAGC 1 chr8:130595153-130595233 ( 73) GGAGGAGC 1 chr2:27632952-27633032 ( 66) GGAGGAGC 1 chr10:23384071-23384151 ( 62) GGAGGAGC 1 chr19:47931533-47931613 ( 26) GGAGGAGC 1 chr1:1851269-1851349 ( 39) GGCGTGGC 1 chr4:6597771-6597851 ( 56) GGTGTGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGHGGGGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.76163 E= 7.2e-009 -1200 -1200 177 -1200 -1200 -1200 177 -1200 15 73 -1200 51 -1200 -1200 177 -1200 -1200 -1200 169 -208 -17 -1200 145 -1200 -1200 -1200 177 -1200 -1200 184 -1200 -1200 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGHGGGGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 41 E= 7.2e-009 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.243902 0.463415 0.000000 0.292683 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.951220 0.048780 0.195122 0.000000 0.804878 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGHGGGGC MEME-4 regular expression -------------------------------------------------------------------------------- GG[CTA]GGGGC -------------------------------------------------------------------------------- Time 16.13 secs. ******************************************************************************** ******************************************************************************** MOTIF CACACACA MEME-5 width = 8 sites = 23 llr = 200 E-value = 1.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACACACA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :8:a:7:a pos.-specific C a:7:a:8: probability G ::1::::: matrix T :22::32: bits 2.3 * 2.1 * 1.8 * ** * 1.6 ** ** * Relative 1.4 ** *** * Entropy 1.1 ** *** * (12.6 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CACACACA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:6408386-6408466 15 1.44e-05 cagatacaca cacacaca cacgcacaca chr17:49012036-49012116 44 1.44e-05 TGAGCCGGAG CACACACA GACATGCACT chr21:46286572-46286652 25 1.44e-05 AATCCCATAa cacacaca cacacacaca chr1:211793599-211793679 73 1.44e-05 cacactggct cacacaca chr14:35822279-35822359 24 1.44e-05 cacacacgtg cacacaca tacacacaca chr20:31063975-31064055 42 1.44e-05 cacacacaca cacacaca cacacacaca chr20:23640755-23640835 3 1.44e-05 ta cacacaca gacccacaga chr17:27039621-27039701 26 1.44e-05 ATATATCACA CACACACA GAATATACTC chr19:3361929-3362009 65 2.79e-05 catgggcaga cacactca cggacaca chr11:12189932-12190012 53 3.85e-05 catatacaca catacaca caccacacac chr17:27193150-27193230 50 3.85e-05 agatacacag catacaca TTAAAAAAAG chr5:139041155-139041235 15 4.91e-05 CATAGGCGTG CACACATA GGCCACTCTC chr1:117368847-117368927 33 6.26e-05 CACCCTGGCC CTCACACA CCCCATATAC chr19:58838036-58838116 36 6.26e-05 ACCCTCAGCT CTCACACA GGCACCCTCA chr16:79880061-79880141 42 7.25e-05 agtgcagtgg catactca tggctcactg chr19:1063020-1063100 53 7.25e-05 GGCCCTGCCC CATACTCA TGCTGGCTCT chr1:27884064-27884144 65 9.75e-05 ACCCTGAGCA CACACTTA GCCAGTGT chr1:36181016-36181096 36 9.75e-05 GTGCACACAG CACACTTA AGCTCATTTA chr6:20213876-20213956 38 9.75e-05 tacagacaga cagacaca tgcacacacg chr19:1174592-1174672 10 1.18e-04 CCACTGGGG CTCACTCA CCCGAGACTT chr4:3783208-3783288 28 1.49e-04 CTCCTCCTCC CACACAAA ACTCCTCCCC chr17:74438808-74438888 23 2.38e-04 AGGCTGGGTC CTGACACA ATCCAGGCGA chr2:158119885-158119965 13 2.97e-04 CATTCTCTTG CACACATT CTAATTCAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:6408386-6408466 1.4e-05 14_[+5]_58 chr17:49012036-49012116 1.4e-05 43_[+5]_29 chr21:46286572-46286652 1.4e-05 24_[+5]_48 chr1:211793599-211793679 1.4e-05 72_[+5] chr14:35822279-35822359 1.4e-05 23_[+5]_49 chr20:31063975-31064055 1.4e-05 41_[+5]_31 chr20:23640755-23640835 1.4e-05 2_[+5]_70 chr17:27039621-27039701 1.4e-05 25_[+5]_47 chr19:3361929-3362009 2.8e-05 64_[+5]_8 chr11:12189932-12190012 3.8e-05 52_[+5]_20 chr17:27193150-27193230 3.8e-05 49_[+5]_23 chr5:139041155-139041235 4.9e-05 14_[+5]_58 chr1:117368847-117368927 6.3e-05 32_[+5]_40 chr19:58838036-58838116 6.3e-05 35_[+5]_37 chr16:79880061-79880141 7.2e-05 41_[+5]_31 chr19:1063020-1063100 7.2e-05 52_[+5]_20 chr1:27884064-27884144 9.8e-05 64_[+5]_8 chr1:36181016-36181096 9.8e-05 35_[+5]_37 chr6:20213876-20213956 9.8e-05 37_[+5]_35 chr19:1174592-1174672 0.00012 9_[+5]_63 chr4:3783208-3783288 0.00015 27_[+5]_45 chr17:74438808-74438888 0.00024 22_[+5]_50 chr2:158119885-158119965 0.0003 12_[+5]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACACACA width=8 seqs=23 chr1:6408386-6408466 ( 15) CACACACA 1 chr17:49012036-49012116 ( 44) CACACACA 1 chr21:46286572-46286652 ( 25) CACACACA 1 chr1:211793599-211793679 ( 73) CACACACA 1 chr14:35822279-35822359 ( 24) CACACACA 1 chr20:31063975-31064055 ( 42) CACACACA 1 chr20:23640755-23640835 ( 3) CACACACA 1 chr17:27039621-27039701 ( 26) CACACACA 1 chr19:3361929-3362009 ( 65) CACACTCA 1 chr11:12189932-12190012 ( 53) CATACACA 1 chr17:27193150-27193230 ( 50) CATACACA 1 chr5:139041155-139041235 ( 15) CACACATA 1 chr1:117368847-117368927 ( 33) CTCACACA 1 chr19:58838036-58838116 ( 36) CTCACACA 1 chr16:79880061-79880141 ( 42) CATACTCA 1 chr19:1063020-1063100 ( 53) CATACTCA 1 chr1:27884064-27884144 ( 65) CACACTTA 1 chr1:36181016-36181096 ( 36) CACACTTA 1 chr6:20213876-20213956 ( 38) CAGACACA 1 chr19:1174592-1174672 ( 10) CTCACTCA 1 chr4:3783208-3783288 ( 28) CACACAAA 1 chr17:74438808-74438888 ( 23) CTGACACA 1 chr2:158119885-158119965 ( 13) CACACATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.6953 E= 1.2e+003 -1117 184 -1117 -1117 191 -1117 -1117 -25 -1117 140 -176 -25 218 -1117 -1117 -1117 -1117 184 -1117 -1117 175 -1117 -1117 34 -234 148 -1117 -25 212 -1117 -1117 -224 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 1.2e+003 0.000000 1.000000 0.000000 0.000000 0.826087 0.000000 0.000000 0.173913 0.000000 0.739130 0.086957 0.173913 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.739130 0.000000 0.000000 0.260870 0.043478 0.782609 0.000000 0.173913 0.956522 0.000000 0.000000 0.043478 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-5 regular expression -------------------------------------------------------------------------------- CACAC[AT]CA -------------------------------------------------------------------------------- Time 19.62 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:8657292-8657372 2.39e-01 80 chr19:7935731-7935811 4.91e-01 80 chr19:50864694-50864774 1.29e-01 80 chr4:6597771-6597851 1.18e-02 7_[+2(5.22e-05)]_37_[+2(9.28e-05)]_\ 20 chr17:1454209-1454289 9.99e-01 80 chr19:12951415-12951495 1.68e-01 60_[+4(5.06e-05)]_12 chr16:29889015-29889095 1.64e-02 45_[+1(5.59e-05)]_27 chr12:131555667-13155574 3.37e-01 24_[+4(8.79e-05)]_33_[+4(8.79e-05)]_\ 7 chr19:6718740-6718820 3.48e-01 80 chr19:1063020-1063100 2.13e-03 13_[+5(7.25e-05)]_8_[+3(2.33e-05)]_\ 15_[+5(7.25e-05)]_20 chr4:4674942-4675022 4.17e-02 39_[+1(3.55e-05)]_33 chr19:18990793-18990873 3.10e-03 17_[+1(3.55e-05)]_8_[+3(2.33e-05)]_\ 39 chr19:7708645-7708725 8.95e-01 80 chr9:130698426-130698506 2.23e-01 80 chr10:3215392-3215472 1.66e-01 25_[+4(8.79e-05)]_47 chr19:3285346-3285426 1.18e-01 80 chr8:11314196-11314276 7.07e-02 49_[+4(5.06e-05)]_23 chr1:16835695-16835775 2.78e-01 80 chr19:17320545-17320625 1.38e-01 8_[+4(8.79e-05)]_64 chr19:6767659-6767739 1.87e-02 71_[+1(3.55e-05)]_1 chr1:21934414-21934494 8.02e-01 80 chr1:38470319-38470399 1.12e-01 80 chr19:46170988-46171068 1.57e-01 16_[+2(1.35e-05)]_28_[+2(6.50e-05)]_\ 20 chr17:76136572-76136652 2.09e-01 45_[+4(5.06e-05)]_27 chr10:104495348-10449542 8.74e-02 80 chr17:39823679-39823759 5.38e-02 61_[+4(5.06e-05)]_11 chr4:3783208-3783288 6.30e-04 19_[+1(5.59e-05)]_25_[+3(6.35e-05)]_\ 20 chr16:84047806-84047886 3.65e-03 80 chr19:17650570-17650650 4.01e-01 80 chr19:6161473-6161553 9.84e-03 8_[+4(8.79e-05)]_12_[+2(5.22e-05)]_\ 44 chr19:47931533-47931613 2.41e-01 80 chr8:144302029-144302109 8.22e-03 80 chr2:183814706-183814786 9.01e-01 80 chr17:27039621-27039701 3.93e-03 21_[+5(1.44e-05)]_16_[+5(1.44e-05)]_\ 27 chr19:49646354-49646434 5.84e-02 40_[+1(3.55e-05)]_32 chr9:136113895-136113975 2.24e-01 60_[+4(5.06e-05)]_12 chr12:131925597-13192567 2.02e-01 80 chr12:6723436-6723516 7.46e-02 63_[+1(5.59e-05)]_9 chr19:38997698-38997778 1.95e-01 56_[+4(5.06e-05)]_16 chr2:47141062-47141142 2.14e-03 36_[+5(2.79e-05)]_36 chr12:109125915-10912599 7.97e-02 80 chr17:42853106-42853186 8.19e-01 80 chr19:3177169-3177249 5.21e-02 33_[+1(3.55e-05)]_39 chr19:50431987-50432067 6.11e-01 80 chr20:23640755-23640835 1.03e-02 2_[+5(1.44e-05)]_12_[+5(9.75e-05)]_\ 10_[+5(2.79e-05)]_2_[+5(1.44e-05)]_2_[+5(3.85e-05)]_12 chr1:26147433-26147513 7.29e-01 80 chr19:53105456-53105536 5.81e-01 80 chr12:131709123-13170920 1.54e-01 58_[+2(7.93e-05)]_14 chr12:131709327-13170940 1.17e-01 47_[+4(5.06e-05)]_25 chr7:111079255-111079335 1.04e-01 80 chr17:27193150-27193230 1.62e-01 49_[+5(3.85e-05)]_23 chr19:56110415-56110495 1.66e-02 69_[+1(5.59e-05)]_3 chr22:19410161-19410241 1.51e-01 80 chr9:130965089-130965169 4.62e-01 80 chrX:148620986-148621066 6.31e-04 1_[+1(5.59e-05)]_16_[+3(2.33e-05)]_\ 21_[+1(6.70e-05)]_18 chr6:2921249-2921329 9.20e-02 80 chr19:50215727-50215807 3.96e-01 80 chr19:49866723-49866803 5.62e-01 80 chr1:16766783-16766863 6.66e-01 80 chr6:43021004-43021084 9.34e-01 80 chr2:128642557-128642637 9.99e-01 80 chr10:23384071-23384151 3.59e-01 80 chr10:70310578-70310658 9.98e-01 80 chr19:50249559-50249639 2.92e-01 80 chr7:74002045-74002125 4.59e-01 80 chr19:6516140-6516220 2.81e-01 61_[+4(5.06e-05)]_11 chr17:27200520-27200600 1.05e-01 11_[+1(6.70e-05)]_61 chr3:128135332-128135412 5.10e-01 80 chrX:1571979-1572059 3.44e-01 80 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10_[+5(1.44e-05)]_8_[+5(1.44e-05)]_\ 46 chr1:167892647-167892727 9.35e-01 80 chr1:29651541-29651621 2.29e-01 80 chr19:41120150-41120230 6.18e-02 80 chr10:76994143-76994223 2.98e-01 6_[+4(5.06e-05)]_66 chr3:72084212-72084292 5.84e-02 6_[+2(9.28e-05)]_20_[+2(9.28e-05)]_\ 38 chr11:827697-827777 5.46e-01 80 chr19:42787437-42787517 3.89e-01 80 chr19:10675912-10675992 7.92e-01 80 chr1:167693321-167693401 6.49e-01 80 chr1:117368847-117368927 6.10e-03 4_[+5(9.75e-05)]_5_[+3(4.16e-05)]_7_\ [+5(6.26e-05)]_32_[+3(9.90e-05)] chr1:23880817-23880897 4.24e-01 80 chr17:79790308-79790388 2.80e-02 80 chr22:38577262-38577342 9.69e-01 80 chr20:33464001-33464081 1.91e-02 29_[+1(1.50e-05)]_43 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n07.farnam.hpc.yale.internal ********************************************************************************