******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/HDAC8.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr7:4933729-4933809 1.0000 80 chr3:195688197-195688277 1.0000 80 chr6:6658147-6658227 1.0000 80 chr15:81062378-81062458 1.0000 80 chr12:113015437-11301551 1.0000 80 chr9:88798403-88798483 1.0000 80 chr7:2996918-2996998 1.0000 80 chr10:89410748-89410828 1.0000 80 chr2:113552603-113552683 1.0000 80 chr2:11262762-11262842 1.0000 80 chr7:30767732-30767812 1.0000 80 chr20:3646904-3646984 1.0000 80 chr5:157353269-157353349 1.0000 80 chr2:205052398-205052478 1.0000 80 chr6:158130769-158130849 1.0000 80 chr12:121581405-12158148 1.0000 80 chr20:3646699-3646779 1.0000 80 chr11:133922684-13392276 1.0000 80 chr1:211880075-211880155 1.0000 80 chr6:20273413-20273493 1.0000 80 chr1:167130635-167130715 1.0000 80 chr6:26550565-26550645 1.0000 80 chr8:9885496-9885576 1.0000 80 chr5:77074381-77074461 1.0000 80 chr10:33345932-33346012 1.0000 80 chr7:156716250-156716330 1.0000 80 chr1:68363202-68363282 1.0000 80 chr6:26550768-26550848 1.0000 80 chr1:228677964-228678044 1.0000 80 chr7:71100984-71101064 1.0000 80 chr9:71922424-71922504 1.0000 80 chr12:9499626-9499706 1.0000 80 chr11:63298763-63298843 1.0000 80 chr2:171110813-171110893 1.0000 80 chr1:1358097-1358177 1.0000 80 chr6:41260560-41260640 1.0000 80 chr12:132109814-13210989 1.0000 80 chr11:61407365-61407445 1.0000 80 chr1:234679915-234679995 1.0000 80 chr12:132038134-13203821 1.0000 80 chr6:34688102-34688182 1.0000 80 chr7:135594157-135594237 1.0000 80 chr10:30396006-30396086 1.0000 80 chr14:31706695-31706775 1.0000 80 chr12:52514993-52515073 1.0000 80 chr2:10362841-10362921 1.0000 80 chr22:19930849-19930929 1.0000 80 chr1:235573961-235574041 1.0000 80 chr19:18475312-18475392 1.0000 80 chr15:68316135-68316215 1.0000 80 chr6:109745702-109745782 1.0000 80 chr5:2156578-2156658 1.0000 80 chr10:80937981-80938061 1.0000 80 chr5:148533303-148533383 1.0000 80 chr1:167130837-167130917 1.0000 80 chr3:45147794-45147874 1.0000 80 chr2:209794778-209794858 1.0000 80 chr5:132307646-132307726 1.0000 80 chr7:128429868-128429948 1.0000 80 chr2:129201375-129201455 1.0000 80 chr1:203748111-203748191 1.0000 80 chr11:68035417-68035497 1.0000 80 chr6:37808103-37808183 1.0000 80 chr10:12486263-12486343 1.0000 80 chr5:79555479-79555559 1.0000 80 chr7:66824974-66825054 1.0000 80 chr22:39167987-39168067 1.0000 80 chr6:26491980-26492060 1.0000 80 chr1:16843651-16843731 1.0000 80 chr16:70780437-70780517 1.0000 80 chr9:131200121-131200201 1.0000 80 chr10:104215025-10421510 1.0000 80 chr9:131200321-131200401 1.0000 80 chr5:54117971-54118051 1.0000 80 chr1:162465760-162465840 1.0000 80 chr7:157103733-157103813 1.0000 80 chr19:49385498-49385578 1.0000 80 chr7:24818293-24818373 1.0000 80 chr10:73512881-73512961 1.0000 80 chr18:33460976-33461056 1.0000 80 chr16:21531934-21532014 1.0000 80 chr15:60314155-60314235 1.0000 80 chr2:98328873-98328953 1.0000 80 chr21:45633732-45633812 1.0000 80 chr4:76755737-76755817 1.0000 80 chr7:123633152-123633232 1.0000 80 chr21:46265422-46265502 1.0000 80 chr1:119506858-119506938 1.0000 80 chr11:71912719-71912799 1.0000 80 chr12:122851263-12285134 1.0000 80 chr1:234681714-234681794 1.0000 80 chr9:132250154-132250234 1.0000 80 chr4:165972109-165972189 1.0000 80 chr6:155000487-155000567 1.0000 80 chr17:75084054-75084134 1.0000 80 chr6:43894902-43894982 1.0000 80 chr16:65798785-65798865 1.0000 80 chr6:36852531-36852611 1.0000 80 chr5:1131984-1132064 1.0000 80 chr1:149362493-149362573 1.0000 80 chr14:93042234-93042314 1.0000 80 chr12:121582141-12158222 1.0000 80 chr21:31014904-31014984 1.0000 80 chr10:70977353-70977433 1.0000 80 chr12:108848533-10884861 1.0000 80 chr12:125115432-12511551 1.0000 80 chr20:30985401-30985481 1.0000 80 chr17:48397148-48397228 1.0000 80 chr1:203569502-203569582 1.0000 80 chr20:48379611-48379691 1.0000 80 chr16:26996513-26996593 1.0000 80 chr16:16286853-16286933 1.0000 80 chr3:195688398-195688478 1.0000 80 chrX:153237651-153237731 1.0000 80 chr3:195073746-195073826 1.0000 80 chr6:134343876-134343956 1.0000 80 chr3:127451812-127451892 1.0000 80 chr5:1132188-1132268 1.0000 80 chr12:65955723-65955803 1.0000 80 chr20:30593995-30594075 1.0000 80 chr15:29965596-29965676 1.0000 80 chr18:20048401-20048481 1.0000 80 chr4:110671980-110672060 1.0000 80 chr15:63816862-63816942 1.0000 80 chr6:41186903-41186983 1.0000 80 chr1:2144320-2144400 1.0000 80 chr7:71454954-71455034 1.0000 80 chr11:475119-475199 1.0000 80 chr2:65028079-65028159 1.0000 80 chr6:10750905-10750985 1.0000 80 chr4:100656024-100656104 1.0000 80 chr1:225654675-225654755 1.0000 80 chr7:138043661-138043741 1.0000 80 chr11:9341128-9341208 1.0000 80 chr9:110438186-110438266 1.0000 80 chr3:195414381-195414461 1.0000 80 chr1:234680840-234680920 1.0000 80 chr9:100812804-100812884 1.0000 80 chr1:1545371-1545451 1.0000 80 chr10:21368138-21368218 1.0000 80 chr3:14293113-14293193 1.0000 80 chrX:53401970-53402050 1.0000 80 chr3:32090160-32090240 1.0000 80 chr6:157955317-157955397 1.0000 80 chr8:9408644-9408724 1.0000 80 chr3:138129204-138129284 1.0000 80 chr4:80132027-80132107 1.0000 80 chr3:195414181-195414261 1.0000 80 chr14:71320490-71320570 1.0000 80 chr4:582363-582443 1.0000 80 chr21:40731498-40731578 1.0000 80 chr1:62432654-62432734 1.0000 80 chr2:171201387-171201467 1.0000 80 chr20:1182824-1182904 1.0000 80 chr22:19930644-19930724 1.0000 80 chr9:99994431-99994511 1.0000 80 chr20:61895477-61895557 1.0000 80 chr16:50491951-50492031 1.0000 80 chr1:145090121-145090201 1.0000 80 chr6:5542450-5542530 1.0000 80 chrX:3488849-3488929 1.0000 80 chr1:31611936-31612016 1.0000 80 chr2:112337298-112337378 1.0000 80 chr15:66893992-66894072 1.0000 80 chr13:37436285-37436365 1.0000 80 chr16:10419949-10420029 1.0000 80 chr5:39150234-39150314 1.0000 80 chr16:26981042-26981122 1.0000 80 chr1:9835281-9835361 1.0000 80 chr8:9408851-9408931 1.0000 80 chr2:199079076-199079156 1.0000 80 chr1:147144008-147144088 1.0000 80 chr9:116142207-116142287 1.0000 80 chr3:38125839-38125919 1.0000 80 chr1:235003509-235003589 1.0000 80 chr1:197908625-197908705 1.0000 80 chr17:60712107-60712187 1.0000 80 chr7:75431200-75431280 1.0000 80 chr8:29995048-29995128 1.0000 80 chr17:41430117-41430197 1.0000 80 chr16:87903400-87903480 1.0000 80 chr15:57075549-57075629 1.0000 80 chr16:17176438-17176518 1.0000 80 chr6:159133031-159133111 1.0000 80 chrX:1511638-1511718 1.0000 80 chr18:71856607-71856687 1.0000 80 chr15:64086033-64086113 1.0000 80 chr10:4909406-4909486 1.0000 80 chr3:14314319-14314399 1.0000 80 chr2:178116425-178116505 1.0000 80 chr1:211884034-211884114 1.0000 80 chr16:57143808-57143888 1.0000 80 chr6:137692555-137692635 1.0000 80 chr11:61717662-61717742 1.0000 80 chr1:150681678-150681758 1.0000 80 chr21:35338044-35338124 1.0000 80 chr1:1071241-1071321 1.0000 80 chr15:58242750-58242830 1.0000 80 chr1:25005047-25005127 1.0000 80 chr12:31887138-31887218 1.0000 80 chr7:14040938-14041018 1.0000 80 chr2:97078460-97078540 1.0000 80 chr3:37865994-37866074 1.0000 80 chr5:70694873-70694953 1.0000 80 chr20:46768481-46768561 1.0000 80 chr9:117320125-117320205 1.0000 80 chr8:94886482-94886562 1.0000 80 chr6:158176242-158176322 1.0000 80 chr10:104215224-10421530 1.0000 80 chr6:134612456-134612536 1.0000 80 chr5:95043451-95043531 1.0000 80 chr15:90325460-90325540 1.0000 80 chr16:50528584-50528664 1.0000 80 chr15:90325662-90325742 1.0000 80 chr1:31242421-31242501 1.0000 80 chr3:45096039-45096119 1.0000 80 chr6:37396487-37396567 1.0000 80 chr2:26981306-26981386 1.0000 80 chr15:68193173-68193253 1.0000 80 chr22:21213425-21213505 1.0000 80 chr9:129921576-129921656 1.0000 80 chrX:15901598-15901678 1.0000 80 chr2:46981186-46981266 1.0000 80 chr9:123981104-123981184 1.0000 80 chr21:34673053-34673133 1.0000 80 chr1:185310691-185310771 1.0000 80 chr7:2996714-2996794 1.0000 80 chr15:45876408-45876488 1.0000 80 chr3:195870683-195870763 1.0000 80 chr11:86452113-86452193 1.0000 80 chr6:147770824-147770904 1.0000 80 chr5:90587969-90588049 1.0000 80 chr2:55343091-55343171 1.0000 80 chr7:73867191-73867271 1.0000 80 chr10:75939048-75939128 1.0000 80 chr16:83885686-83885766 1.0000 80 chr9:139098784-139098864 1.0000 80 chr8:129440201-129440281 1.0000 80 chr1:228605755-228605835 1.0000 80 chr11:76764469-76764549 1.0000 80 chr22:31136571-31136651 1.0000 80 chr1:231208406-231208486 1.0000 80 chr6:20273200-20273280 1.0000 80 chr1:62332801-62332881 1.0000 80 chr6:91167175-91167255 1.0000 80 chr5:96376995-96377075 1.0000 80 chr15:41769406-41769486 1.0000 80 chr15:35992604-35992684 1.0000 80 chr6:14077550-14077630 1.0000 80 chr6:144128006-144128086 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_HDAC8/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/HDAC8.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.254 C 0.245 G 0.246 T 0.255 Background letter frequencies (from file dataset with add-one prior applied): A 0.254 C 0.245 G 0.246 T 0.255 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF ARATGRRG MEME-1 width = 8 sites = 116 llr = 967 E-value = 8.0e-109 ******************************************************************************** -------------------------------------------------------------------------------- Motif ARATGRRG MEME-1 Description -------------------------------------------------------------------------------- Simplified A a5a:146: pos.-specific C :::::::: probability G :5::964a matrix T :::a:::: bits 2.0 ** * 1.8 * ** * 1.6 * ** * 1.4 * *** * Relative 1.2 * *** * Entropy 1.0 ****** * (12.0 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGATGGAG consensus A AG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARATGRRG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr15:35992604-35992684 56 1.53e-05 cccctattca agatggag ctgctctggt chr1:62332801-62332881 69 1.53e-05 gcgctattca agatggag ttgc chr6:20273200-20273280 18 1.53e-05 cccttattca agatggag ttgctctggt chr22:31136571-31136651 21 1.53e-05 gttagaagca agatggag tcagttaagt chr7:73867191-73867271 30 1.53e-05 gctggaagca agatggag tcagccacgc chr5:90587969-90588049 11 1.53e-05 cccctattca agatggag ttgctatggt chr15:45876408-45876488 21 1.53e-05 gtcctattca agatggag ttgctctggc chr15:68193173-68193253 26 1.53e-05 gcactattca agatggag ttgctctggt chr5:95043451-95043531 16 1.53e-05 gaaagagcca agatggag tctgtctggc chr6:158176242-158176322 67 1.53e-05 tctgtattca agatggag ttgctc chr9:117320125-117320205 38 1.53e-05 cccatattca agatggag tcactccggt chr20:46768481-46768561 1 1.53e-05 . agatggag ttgctctggt chr12:31887138-31887218 20 1.53e-05 gttagaagca agatggag tcggttaagt chr18:71856607-71856687 51 1.53e-05 ctcctattca agatggag ttgctctggt chr6:159133031-159133111 46 1.53e-05 ctcctattca agatggag ttgctgtggt chr16:17176438-17176518 16 1.53e-05 cccctattca agatggag tcactctggt chr17:60712107-60712187 47 1.53e-05 ccccttttaa agatggag ttgctctggt chr1:9835281-9835361 36 1.53e-05 accctattca agatggag tcgctctggt chr1:31611936-31612016 29 1.53e-05 cccctattca agatggag ttgctctggt chr6:5542450-5542530 41 1.53e-05 ctcctactca agatggag tcactctggt chr3:138129204-138129284 25 1.53e-05 cccctattca agatggag ttgctgtggt chr3:14293113-14293193 30 1.53e-05 gttagaagca agatggag tcaattatgt chr9:110438186-110438266 63 1.53e-05 cccctattca agatggag tcactctggt chr1:225654675-225654755 22 1.53e-05 cccctataca agatggag ttgctctggt chr4:100656024-100656104 25 1.53e-05 ctcctattta agatggag ttagtctggt chr6:10750905-10750985 49 1.53e-05 gaaagagcca agatggag tctgtctggc chr20:30593995-30594075 34 1.53e-05 cttctattca agatggag ttgctctggt chr20:48379611-48379691 36 1.53e-05 cccctattcc agatggag tcgctctggt chr17:48397148-48397228 31 1.53e-05 cccctattca agatggag ttgctctggt chr17:75084054-75084134 26 1.53e-05 cccctattca agatggag ttgctctggt chr7:123633152-123633232 29 1.53e-05 gccctattca agatggag tcactctggt chr2:98328873-98328953 17 1.53e-05 gaaagagcca agatggag tctgtctggc chr1:162465760-162465840 56 1.53e-05 ctcctattca agatggag ttgctctggt chr1:16843651-16843731 14 1.53e-05 gctagaacca agatggag tcagccatgt chr10:12486263-12486343 24 1.53e-05 ctcctattca agatggag ttgctctggt chr15:68316135-68316215 59 1.53e-05 gctagaagca agatggag tcagccatgc chr1:235573961-235574041 20 1.53e-05 ctcctattca agatggag ttgctctggt chr12:52514993-52515073 59 1.53e-05 cccctattca agatggag ttgctgcggt chr6:41260560-41260640 67 1.53e-05 ctcctattca agatggag ttgctc chr9:71922424-71922504 26 1.53e-05 ttcttattcg agatggag ttgctctggt chr7:71100984-71101064 73 1.53e-05 cccctattca agatggag chr7:156716250-156716330 43 1.53e-05 tctttttcta agatggag tcacttatgt chr11:133922684-13392276 21 1.53e-05 gccccattca agatggag ttgctctggt chr2:205052398-205052478 49 1.53e-05 cccctattca agatggag ttgctctggt chr5:157353269-157353349 7 1.53e-05 tattca agatggag tcattctggt chr12:113015437-11301551 26 1.53e-05 cccctattca agatggag ttgctctggt chr7:4933729-4933809 5 1.53e-05 ttca agatggag tcactctggt chr6:134612456-134612536 34 3.11e-05 ctaaaaatca aaatggag tcacctatgc chr17:41430117-41430197 6 3.11e-05 cctca aaatggag tcgctttggt chr9:116142207-116142287 58 3.11e-05 gtacaggtca aaatggag tttcttatgt chr5:39150234-39150314 14 3.11e-05 ttaaaaatca aaatggag tcacccacgc chr6:157955317-157955397 29 3.11e-05 ACAGAAAGCA AAATGGAG TTACTTTGGC chr1:1545371-1545451 24 3.11e-05 aaaccctgaa aaatggag ccaggaggcc chr11:9341128-9341208 54 3.11e-05 gtacagaaca aaatggag tctcttatgt chr6:134343876-134343956 48 3.11e-05 aacacaaaca aaatggag tcaggagggc chr1:203569502-203569582 48 3.11e-05 ctcctagtca aaatggag tcactctggt chr6:36852531-36852611 28 3.11e-05 aaccaaacta aaatggag tcactcatgc chr6:26491980-26492060 34 3.11e-05 gaagaagcca aaatggag tttgtctggc chr6:34688102-34688182 30 3.11e-05 gtacagaaca aaatggag tctcctatgt chr6:26550565-26550645 5 3.11e-05 ctca aaatggag tcgctctggt chr2:46981186-46981266 69 4.59e-05 cccctattca agatgggg ttgc chr16:50491951-50492031 7 4.59e-05 CTCTAT AGATGGGG GTGCTGGAAT chr12:121582141-12158222 45 4.59e-05 cttttagtag agatgggg tctcaccatg chr14:93042234-93042314 20 4.59e-05 cccctattca agatgggg gtcactctgg chr10:73512881-73512961 63 4.59e-05 TCTGTCCAGC AGATGGGG CCTCCATGAG chr6:20273413-20273493 40 4.59e-05 tttttagtag agatgggg tttcaccatg chr2:209794778-209794858 40 7.70e-05 acgatggcag agatgaag accatgcatg chr16:83885686-83885766 5 9.33e-05 tgct aaaTGAAG CCATCTACCC chr2:171201387-171201467 67 1.09e-04 CTGTGGGATG AGATGAGG AAAGTA chr6:14077550-14077630 63 1.24e-04 gggctgggta aaatgagg ctcacacctg chr1:211884034-211884114 70 1.24e-04 gagctgggta aaatgagg ctg chr15:64086033-64086113 12 1.24e-04 gagctgggta aaatgagg ctgagaccta chr7:75431200-75431280 31 1.24e-04 gagctgggta aaatgagg ctgagaccta chr1:147144008-147144088 54 1.24e-04 cggctgggta aaatgagg ctgagaccta chrX:3488849-3488929 53 1.24e-04 gggctgggta aaatgagg ctgagaccta chr1:145090121-145090201 60 1.24e-04 gggctgggta aaatgagg ctgagatcta chr20:1182824-1182904 51 1.24e-04 gggctgggta aaatgagg atgagaccca chr21:40731498-40731578 68 1.24e-04 gggctgtgta aaatgagg ctggg chr10:21368138-21368218 51 1.24e-04 AAAAGAAAGA AAATGAGG AGGTGAAGAG chr7:138043661-138043741 20 1.24e-04 aggggctata aaatgagg ctgagacctg chr7:71454954-71455034 40 1.24e-04 gggctggata aaatgagg ctgagaccta chr3:127451812-127451892 40 1.24e-04 gggctgggta aaatgagg ctgagagcta chr16:16286853-16286933 25 1.24e-04 ggactgggta aaatgagg ctgagaccta chr12:125115432-12511551 70 1.24e-04 gggccgggta aaatgagg ccg chr12:108848533-10884861 22 1.24e-04 gacctgggta aaatgagg ctgagaccta chr6:155000487-155000567 2 1.24e-04 a aaatgagg ctgagaccta chr7:135594157-135594237 66 1.24e-04 gagctgggta aaatgagg ctgagac chr11:61407365-61407445 70 1.24e-04 aggctgggta aaatgagg ctg chr1:211880075-211880155 43 1.24e-04 gagctgggta aaatgagg ctgacatcta chr6:158130769-158130849 44 1.24e-04 gagctaggta aaatgagg cagagaccta chr7:30767732-30767812 73 1.24e-04 gagctcggta aaatgagg chr8:94886482-94886562 29 1.40e-04 cccactgccc agatagag ctgatttatc chr7:2996918-2996998 60 1.72e-04 ttttttcttg agataggg tcctgcgctg chr16:26981042-26981122 58 1.88e-04 actccatctt aaataggg gctgggtaaa chr16:50528584-50528664 67 2.21e-04 gggctgggta aaataaag ctgaga chr5:54117971-54118051 25 2.21e-04 gctgggtata aaataaag ctgagacctg chr10:75939048-75939128 56 2.53e-04 ggtctgggta aaataagg ctgagaccta chr5:70694873-70694953 59 2.53e-04 gggctgggta aaataagg ccgagaccta chr1:25005047-25005127 71 2.53e-04 gggctgggta aaataagg ct chr13:37436285-37436365 63 2.53e-04 gggctgagta aaataagg tggagaccta chr14:71320490-71320570 52 2.53e-04 gagctgggta aaataagg ctgaaaccta chr3:32090160-32090240 73 2.53e-04 gggctgggta aaataagg chr2:65028079-65028159 29 2.53e-04 ggtctgtgta aaataagg ctgagaccta chr4:165972109-165972189 56 2.53e-04 gggctgagta aaataagg ctgaagtcta chr5:79555479-79555559 53 2.53e-04 ggactgggta aaataagg ctgtgacctg chr2:10362841-10362921 58 2.53e-04 gggctgggtg aaataagg ctgagaccta chr10:33345932-33346012 62 2.53e-04 gggctgggtg aaataagg ctgagaccta chr1:167130635-167130715 73 2.53e-04 gggctgggta aaataagg chr15:90325662-90325742 63 2.68e-04 gccaaaacca agatggtg acaaaagtga chr15:60314155-60314235 15 2.68e-04 cccctactca agatggtg tcgctccagt chr3:195870683-195870763 54 3.14e-04 CCTGGGGCCA AAATGGCG GCTGACATCT chr4:80132027-80132107 4 3.14e-04 gta aaatggcg agagtgatgg chr1:167130837-167130917 23 3.30e-04 accaaaacca agatgatg atgaaagtga chr14:31706695-31706775 22 3.77e-04 ctcctattca atatggag ttgctctggt chr11:86452113-86452193 56 4.08e-04 GGTTCTAAGA GAATGGAG TCCTCACAGG chr9:139098784-139098864 61 5.00e-04 GGCCTGCACT GGATGAAG CAATGAAGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARATGRRG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:35992604-35992684 1.5e-05 55_[+1]_17 chr1:62332801-62332881 1.5e-05 68_[+1]_4 chr6:20273200-20273280 1.5e-05 17_[+1]_55 chr22:31136571-31136651 1.5e-05 20_[+1]_52 chr7:73867191-73867271 1.5e-05 29_[+1]_43 chr5:90587969-90588049 1.5e-05 10_[+1]_62 chr15:45876408-45876488 1.5e-05 20_[+1]_52 chr15:68193173-68193253 1.5e-05 25_[+1]_47 chr5:95043451-95043531 1.5e-05 15_[+1]_57 chr6:158176242-158176322 1.5e-05 66_[+1]_6 chr9:117320125-117320205 1.5e-05 37_[+1]_35 chr20:46768481-46768561 1.5e-05 [+1]_72 chr12:31887138-31887218 1.5e-05 19_[+1]_53 chr18:71856607-71856687 1.5e-05 50_[+1]_22 chr6:159133031-159133111 1.5e-05 45_[+1]_27 chr16:17176438-17176518 1.5e-05 15_[+1]_57 chr17:60712107-60712187 1.5e-05 46_[+1]_26 chr1:9835281-9835361 1.5e-05 35_[+1]_37 chr1:31611936-31612016 1.5e-05 28_[+1]_44 chr6:5542450-5542530 1.5e-05 40_[+1]_32 chr3:138129204-138129284 1.5e-05 24_[+1]_48 chr3:14293113-14293193 1.5e-05 29_[+1]_43 chr9:110438186-110438266 1.5e-05 62_[+1]_10 chr1:225654675-225654755 1.5e-05 21_[+1]_51 chr4:100656024-100656104 1.5e-05 24_[+1]_48 chr6:10750905-10750985 1.5e-05 48_[+1]_24 chr20:30593995-30594075 1.5e-05 33_[+1]_39 chr20:48379611-48379691 1.5e-05 35_[+1]_37 chr17:48397148-48397228 1.5e-05 30_[+1]_42 chr17:75084054-75084134 1.5e-05 25_[+1]_47 chr7:123633152-123633232 1.5e-05 28_[+1]_44 chr2:98328873-98328953 1.5e-05 16_[+1]_56 chr1:162465760-162465840 1.5e-05 55_[+1]_17 chr1:16843651-16843731 1.5e-05 13_[+1]_59 chr10:12486263-12486343 1.5e-05 23_[+1]_49 chr15:68316135-68316215 1.5e-05 58_[+1]_14 chr1:235573961-235574041 1.5e-05 19_[+1]_53 chr12:52514993-52515073 1.5e-05 58_[+1]_14 chr6:41260560-41260640 1.5e-05 66_[+1]_6 chr9:71922424-71922504 1.5e-05 25_[+1]_47 chr7:71100984-71101064 1.5e-05 72_[+1] chr7:156716250-156716330 1.5e-05 42_[+1]_30 chr11:133922684-13392276 1.5e-05 20_[+1]_52 chr2:205052398-205052478 1.5e-05 48_[+1]_24 chr5:157353269-157353349 1.5e-05 6_[+1]_66 chr12:113015437-11301551 1.5e-05 25_[+1]_47 chr7:4933729-4933809 1.5e-05 4_[+1]_68 chr6:134612456-134612536 3.1e-05 33_[+1]_39 chr17:41430117-41430197 3.1e-05 5_[+1]_67 chr9:116142207-116142287 3.1e-05 57_[+1]_15 chr5:39150234-39150314 3.1e-05 13_[+1]_59 chr6:157955317-157955397 3.1e-05 28_[+1]_44 chr1:1545371-1545451 3.1e-05 23_[+1]_49 chr11:9341128-9341208 3.1e-05 53_[+1]_19 chr6:134343876-134343956 3.1e-05 47_[+1]_25 chr1:203569502-203569582 3.1e-05 47_[+1]_25 chr6:36852531-36852611 3.1e-05 27_[+1]_45 chr6:26491980-26492060 3.1e-05 33_[+1]_39 chr6:34688102-34688182 3.1e-05 29_[+1]_43 chr6:26550565-26550645 3.1e-05 4_[+1]_68 chr2:46981186-46981266 4.6e-05 68_[+1]_4 chr16:50491951-50492031 4.6e-05 6_[+1]_66 chr12:121582141-12158222 4.6e-05 44_[+1]_28 chr14:93042234-93042314 4.6e-05 19_[+1]_53 chr10:73512881-73512961 4.6e-05 62_[+1]_10 chr6:20273413-20273493 4.6e-05 39_[+1]_33 chr2:209794778-209794858 7.7e-05 39_[+1]_33 chr16:83885686-83885766 9.3e-05 4_[+1]_68 chr2:171201387-171201467 0.00011 66_[+1]_6 chr6:14077550-14077630 0.00012 62_[+1]_10 chr1:211884034-211884114 0.00012 69_[+1]_3 chr15:64086033-64086113 0.00012 11_[+1]_61 chr7:75431200-75431280 0.00012 30_[+1]_42 chr1:147144008-147144088 0.00012 53_[+1]_19 chrX:3488849-3488929 0.00012 52_[+1]_20 chr1:145090121-145090201 0.00012 59_[+1]_13 chr20:1182824-1182904 0.00012 50_[+1]_22 chr21:40731498-40731578 0.00012 67_[+1]_5 chr10:21368138-21368218 0.00012 50_[+1]_22 chr7:138043661-138043741 0.00012 19_[+1]_53 chr7:71454954-71455034 0.00012 39_[+1]_33 chr3:127451812-127451892 0.00012 39_[+1]_33 chr16:16286853-16286933 0.00012 24_[+1]_48 chr12:125115432-12511551 0.00012 69_[+1]_3 chr12:108848533-10884861 0.00012 21_[+1]_51 chr6:155000487-155000567 0.00012 1_[+1]_71 chr7:135594157-135594237 0.00012 65_[+1]_7 chr11:61407365-61407445 0.00012 69_[+1]_3 chr1:211880075-211880155 0.00012 42_[+1]_30 chr6:158130769-158130849 0.00012 43_[+1]_29 chr7:30767732-30767812 0.00012 72_[+1] chr8:94886482-94886562 0.00014 28_[+1]_44 chr7:2996918-2996998 0.00017 59_[+1]_13 chr16:26981042-26981122 0.00019 57_[+1]_15 chr16:50528584-50528664 0.00022 66_[+1]_6 chr5:54117971-54118051 0.00022 24_[+1]_48 chr10:75939048-75939128 0.00025 55_[+1]_17 chr5:70694873-70694953 0.00025 58_[+1]_14 chr1:25005047-25005127 0.00025 70_[+1]_2 chr13:37436285-37436365 0.00025 62_[+1]_10 chr14:71320490-71320570 0.00025 51_[+1]_21 chr3:32090160-32090240 0.00025 72_[+1] chr2:65028079-65028159 0.00025 28_[+1]_44 chr4:165972109-165972189 0.00025 55_[+1]_17 chr5:79555479-79555559 0.00025 52_[+1]_20 chr2:10362841-10362921 0.00025 57_[+1]_15 chr10:33345932-33346012 0.00025 61_[+1]_11 chr1:167130635-167130715 0.00025 72_[+1] chr15:90325662-90325742 0.00027 62_[+1]_10 chr15:60314155-60314235 0.00027 14_[+1]_58 chr3:195870683-195870763 0.00031 53_[+1]_19 chr4:80132027-80132107 0.00031 3_[+1]_69 chr1:167130837-167130917 0.00033 22_[+1]_50 chr14:31706695-31706775 0.00038 21_[+1]_51 chr11:86452113-86452193 0.00041 55_[+1]_17 chr9:139098784-139098864 0.0005 60_[+1]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARATGRRG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ARATGRRG width=8 seqs=116 chr15:35992604-35992684 ( 56) AGATGGAG 1 chr1:62332801-62332881 ( 69) AGATGGAG 1 chr6:20273200-20273280 ( 18) AGATGGAG 1 chr22:31136571-31136651 ( 21) AGATGGAG 1 chr7:73867191-73867271 ( 30) AGATGGAG 1 chr5:90587969-90588049 ( 11) AGATGGAG 1 chr15:45876408-45876488 ( 21) AGATGGAG 1 chr15:68193173-68193253 ( 26) AGATGGAG 1 chr5:95043451-95043531 ( 16) AGATGGAG 1 chr6:158176242-158176322 ( 67) AGATGGAG 1 chr9:117320125-117320205 ( 38) AGATGGAG 1 chr20:46768481-46768561 ( 1) AGATGGAG 1 chr12:31887138-31887218 ( 20) AGATGGAG 1 chr18:71856607-71856687 ( 51) AGATGGAG 1 chr6:159133031-159133111 ( 46) AGATGGAG 1 chr16:17176438-17176518 ( 16) AGATGGAG 1 chr17:60712107-60712187 ( 47) AGATGGAG 1 chr1:9835281-9835361 ( 36) AGATGGAG 1 chr1:31611936-31612016 ( 29) AGATGGAG 1 chr6:5542450-5542530 ( 41) AGATGGAG 1 chr3:138129204-138129284 ( 25) AGATGGAG 1 chr3:14293113-14293193 ( 30) AGATGGAG 1 chr9:110438186-110438266 ( 63) AGATGGAG 1 chr1:225654675-225654755 ( 22) AGATGGAG 1 chr4:100656024-100656104 ( 25) AGATGGAG 1 chr6:10750905-10750985 ( 49) AGATGGAG 1 chr20:30593995-30594075 ( 34) AGATGGAG 1 chr20:48379611-48379691 ( 36) AGATGGAG 1 chr17:48397148-48397228 ( 31) AGATGGAG 1 chr17:75084054-75084134 ( 26) AGATGGAG 1 chr7:123633152-123633232 ( 29) AGATGGAG 1 chr2:98328873-98328953 ( 17) AGATGGAG 1 chr1:162465760-162465840 ( 56) AGATGGAG 1 chr1:16843651-16843731 ( 14) AGATGGAG 1 chr10:12486263-12486343 ( 24) AGATGGAG 1 chr15:68316135-68316215 ( 59) AGATGGAG 1 chr1:235573961-235574041 ( 20) AGATGGAG 1 chr12:52514993-52515073 ( 59) AGATGGAG 1 chr6:41260560-41260640 ( 67) AGATGGAG 1 chr9:71922424-71922504 ( 26) AGATGGAG 1 chr7:71100984-71101064 ( 73) AGATGGAG 1 chr7:156716250-156716330 ( 43) AGATGGAG 1 chr11:133922684-13392276 ( 21) AGATGGAG 1 chr2:205052398-205052478 ( 49) AGATGGAG 1 chr5:157353269-157353349 ( 7) AGATGGAG 1 chr12:113015437-11301551 ( 26) AGATGGAG 1 chr7:4933729-4933809 ( 5) AGATGGAG 1 chr6:134612456-134612536 ( 34) AAATGGAG 1 chr17:41430117-41430197 ( 6) AAATGGAG 1 chr9:116142207-116142287 ( 58) AAATGGAG 1 chr5:39150234-39150314 ( 14) AAATGGAG 1 chr6:157955317-157955397 ( 29) AAATGGAG 1 chr1:1545371-1545451 ( 24) AAATGGAG 1 chr11:9341128-9341208 ( 54) AAATGGAG 1 chr6:134343876-134343956 ( 48) AAATGGAG 1 chr1:203569502-203569582 ( 48) AAATGGAG 1 chr6:36852531-36852611 ( 28) AAATGGAG 1 chr6:26491980-26492060 ( 34) AAATGGAG 1 chr6:34688102-34688182 ( 30) AAATGGAG 1 chr6:26550565-26550645 ( 5) AAATGGAG 1 chr2:46981186-46981266 ( 69) AGATGGGG 1 chr16:50491951-50492031 ( 7) AGATGGGG 1 chr12:121582141-12158222 ( 45) AGATGGGG 1 chr14:93042234-93042314 ( 20) AGATGGGG 1 chr10:73512881-73512961 ( 63) AGATGGGG 1 chr6:20273413-20273493 ( 40) AGATGGGG 1 chr2:209794778-209794858 ( 40) AGATGAAG 1 chr16:83885686-83885766 ( 5) AAATGAAG 1 chr2:171201387-171201467 ( 67) AGATGAGG 1 chr6:14077550-14077630 ( 63) AAATGAGG 1 chr1:211884034-211884114 ( 70) AAATGAGG 1 chr15:64086033-64086113 ( 12) AAATGAGG 1 chr7:75431200-75431280 ( 31) AAATGAGG 1 chr1:147144008-147144088 ( 54) AAATGAGG 1 chrX:3488849-3488929 ( 53) AAATGAGG 1 chr1:145090121-145090201 ( 60) AAATGAGG 1 chr20:1182824-1182904 ( 51) AAATGAGG 1 chr21:40731498-40731578 ( 68) AAATGAGG 1 chr10:21368138-21368218 ( 51) AAATGAGG 1 chr7:138043661-138043741 ( 20) AAATGAGG 1 chr7:71454954-71455034 ( 40) AAATGAGG 1 chr3:127451812-127451892 ( 40) AAATGAGG 1 chr16:16286853-16286933 ( 25) AAATGAGG 1 chr12:125115432-12511551 ( 70) AAATGAGG 1 chr12:108848533-10884861 ( 22) AAATGAGG 1 chr6:155000487-155000567 ( 2) AAATGAGG 1 chr7:135594157-135594237 ( 66) AAATGAGG 1 chr11:61407365-61407445 ( 70) AAATGAGG 1 chr1:211880075-211880155 ( 43) AAATGAGG 1 chr6:158130769-158130849 ( 44) AAATGAGG 1 chr7:30767732-30767812 ( 73) AAATGAGG 1 chr8:94886482-94886562 ( 29) AGATAGAG 1 chr7:2996918-2996998 ( 60) AGATAGGG 1 chr16:26981042-26981122 ( 58) AAATAGGG 1 chr16:50528584-50528664 ( 67) AAATAAAG 1 chr5:54117971-54118051 ( 25) AAATAAAG 1 chr10:75939048-75939128 ( 56) AAATAAGG 1 chr5:70694873-70694953 ( 59) AAATAAGG 1 chr1:25005047-25005127 ( 71) AAATAAGG 1 chr13:37436285-37436365 ( 63) AAATAAGG 1 chr14:71320490-71320570 ( 52) AAATAAGG 1 chr3:32090160-32090240 ( 73) AAATAAGG 1 chr2:65028079-65028159 ( 29) AAATAAGG 1 chr4:165972109-165972189 ( 56) AAATAAGG 1 chr5:79555479-79555559 ( 53) AAATAAGG 1 chr2:10362841-10362921 ( 58) AAATAAGG 1 chr10:33345932-33346012 ( 62) AAATAAGG 1 chr1:167130635-167130715 ( 73) AAATAAGG 1 chr15:90325662-90325742 ( 63) AGATGGTG 1 chr15:60314155-60314235 ( 15) AGATGGTG 1 chr3:195870683-195870763 ( 54) AAATGGCG 1 chr4:80132027-80132107 ( 4) AAATGGCG 1 chr1:167130837-167130917 ( 23) AGATGATG 1 chr14:31706695-31706775 ( 22) ATATGGAG 1 chr11:86452113-86452193 ( 56) GAATGGAG 1 chr9:139098784-139098864 ( 61) GGATGAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARATGRRG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.93248 E= 8.0e-109 195 -1350 -383 -1350 87 -1350 110 -488 198 -1350 -1350 -1350 -1350 -1350 -1350 197 -79 -1350 180 -1350 48 -1350 139 -1350 121 -383 59 -330 -1350 -1350 202 -1350 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARATGRRG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 116 E= 8.0e-109 0.982759 0.000000 0.017241 0.000000 0.465517 0.000000 0.525862 0.008621 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.146552 0.000000 0.853448 0.000000 0.353448 0.000000 0.646552 0.000000 0.586207 0.017241 0.370690 0.025862 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARATGRRG MEME-1 regular expression -------------------------------------------------------------------------------- A[GA]ATG[GA][AG]G -------------------------------------------------------------------------------- Time 4.95 secs. ******************************************************************************** ******************************************************************************** MOTIF TCCATCTT MEME-2 width = 8 sites = 74 llr = 688 E-value = 5.5e-078 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCCATCTT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::a:::: pos.-specific C :aa::7:: probability G 1::::::: matrix T 9:::a3aa bits 2.0 * 1.8 **** * 1.6 **** ** 1.4 ***** ** Relative 1.2 ***** ** Entropy 1.0 ******** (13.4 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCCATCTT consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCATCTT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:14077550-14077630 40 1.58e-05 ccggagagac tccatctt gaatagggct chr10:75939048-75939128 32 1.58e-05 ccagagcgac tccatctt gaatagggtc chr16:50528584-50528664 43 1.58e-05 ccagcccaac tccatctt gaataggggc chr5:70694873-70694953 35 1.58e-05 ccacagcaac tccatctt gagtaggggc chr2:97078460-97078540 52 1.58e-05 ccagagcaac tccatctt gactaagagc chr1:211884034-211884114 46 1.58e-05 ccagagcaac tccatctt aaataggagc chr7:75431200-75431280 7 1.58e-05 agtgac tccatctt gaataggagc chr1:147144008-147144088 30 1.58e-05 ccatagtgac tccatctt gaatagcggc chr16:26981042-26981122 50 1.58e-05 ccagagcgac tccatctt aaataggggc chr13:37436285-37436365 39 1.58e-05 ccagagcaac tccatctt gaataggggc chr15:66893992-66894072 25 1.58e-05 cataagtgac tccatctt agaaaaggac chr2:112337298-112337378 61 1.58e-05 cctaagtgac tccatctt agaaaaagac chrX:3488849-3488929 29 1.58e-05 ccacagcaac tccatctt gaataggggc chr1:145090121-145090201 36 1.58e-05 tcagaatgac tccatctt gaatacgggc chr16:50491951-50492031 52 1.58e-05 ccagagcgac tccatctt gaatagaggc chr20:1182824-1182904 27 1.58e-05 ccagagtaac tccatctt gaataggggc chr21:40731498-40731578 48 1.58e-05 ccagagcgac tccatctt gagggctgtg chr14:71320490-71320570 28 1.58e-05 ccagagcaac tccatctt gaataggagc chr2:65028079-65028159 5 1.58e-05 caac tccatctt gagtagggtc chr7:71454954-71455034 16 1.58e-05 ccagggtgac tccatctt gaataggggc chr3:127451812-127451892 16 1.58e-05 ccagagcaac tccatctt gaacgggggc chr16:16286853-16286933 1 1.58e-05 . tccatctt gaatagggac chr12:125115432-12511551 46 1.58e-05 ccagagcaac tccatctt gaacaggggc chr4:165972109-165972189 32 1.58e-05 ccagagcaac tccatctt gagtaggggc chr21:45633732-45633812 55 1.58e-05 ccagagtgac tccatctt aaataggcac chr7:157103733-157103813 32 1.58e-05 cataactaac tccatctt gaagccaggc chr22:39167987-39168067 63 1.58e-05 ccagagcaac tccatctt gaataggagc chr5:79555479-79555559 29 1.58e-05 ccagagagac tccatctt gaatagggac chr1:203748111-203748191 58 1.58e-05 ccagagcgac tccatctt aaatggcagc chr7:128429868-128429948 53 1.58e-05 ccagagcaac tccatctt gaatagaagc chr5:132307646-132307726 61 1.58e-05 acagagagac tccatctt gactacgggc chr2:10362841-10362921 30 1.58e-05 ccagagcgac tccatctt gaatagggaa chr10:30396006-30396086 71 1.58e-05 ccagagcgac tccatctt ga chr7:135594157-135594237 42 1.58e-05 ccagagcaac tccatctt gaataggagc chr11:61407365-61407445 46 1.58e-05 ccagagcaac tccatctt gaatagaggc chr2:171110813-171110893 51 1.58e-05 gcaaaggctc tccatctt actctgaatg chr10:33345932-33346012 39 1.58e-05 ccagagtgac tccatctt gaatagggct chr5:77074381-77074461 34 1.58e-05 ccaaagcaac tccatctt gaatagggtc chr8:9885496-9885576 59 1.58e-05 ccagagcaac tccatctt gaataggggc chr1:167130635-167130715 49 1.58e-05 ccagagtgac tccatctt gaataggggc chr1:211880075-211880155 19 1.58e-05 ccagaacaac tccatctt gaataggagc chr11:133922684-13392276 71 1.58e-05 TGCCCACAGA TCCATCTT CA chr7:30767732-30767812 49 1.58e-05 ccagagcaac tccatctt gaataggagc chr11:76764469-76764549 50 3.22e-05 ccagagcaac tccatttt gaacacgggc chr1:185310691-185310771 30 3.22e-05 catgagtgac tccatttt ggtttggtct chr9:123981104-123981184 60 3.22e-05 cctaagtgac tccatttt ggtactggca chr6:37396487-37396567 72 3.22e-05 catgagtgac tccatttt g chr1:25005047-25005127 47 3.22e-05 ccagagcaac tccatttt gaataggggc chr1:150681678-150681758 50 3.22e-05 cataagagac tccatttt gaaaaagact chr6:137692555-137692635 63 3.22e-05 catgagtgac tccatttt ggtttggtct chr20:61895477-61895557 5 3.22e-05 tgac tccatttt ggttttgtct chr9:99994431-99994511 54 3.22e-05 cataagagac tccatttt gttctgtact chr3:32090160-32090240 49 3.22e-05 ccagagcaac tccatttt gaataggggc chr9:100812804-100812884 29 3.22e-05 cacgagtgac tccatttt ggtttggttt chr4:76755737-76755817 70 3.22e-05 agtgggtgac tccatttt ggt chr4:582363-582443 46 4.75e-05 CCATGCTGCG GCCATCTT TTCAGCAAAG chr18:20048401-20048481 51 4.75e-05 ccaacaaggt gccatctt ggaagcagaa chr6:144128006-144128086 55 6.27e-05 gccactccac tccagctt ggatgacaga chr6:91167175-91167255 10 7.79e-05 gagcaagac tccatctc aaaaaacaaa chr5:96376995-96377075 8 1.10e-04 cagctgc gccatttt aaaaatcttt chr8:129440201-129440281 38 1.10e-04 CTGCTCCAGG GCCATTTT CCAGGTGACA chr1:234681714-234681794 61 1.10e-04 GAGGGAGCAG GCCATTTT TCTGTGTCAC chr6:109745702-109745782 52 1.10e-04 ccacagcaac ttcatctt gaataggagc chr10:89410748-89410828 55 1.27e-04 ccagagtgac tccatatt gaacaggggc chr10:4909406-4909486 73 1.42e-04 cttagacttc tccagttt chr4:110671980-110672060 68 1.42e-04 ctctgagatt tccagttt atcta chr15:57075549-57075629 13 2.19e-04 ccagagcgcc accatctt gagcaggggc chr8:9408851-9408931 65 2.19e-04 GTTAGCTATA TCCATCTG CATAAGCC chr6:158130769-158130849 20 2.19e-04 ccagagcaac tccgtctt gagtaggagc chr21:46265422-46265502 71 2.35e-04 CAAGATGTTC TGCATCTT GT chr10:73512881-73512961 8 2.51e-04 TCCGGAC TCCATTTC TTTTCACATG chr7:24818293-24818373 47 2.68e-04 ggtggcctct ttcatttt aaagggccaa chr7:66824974-66825054 32 3.48e-04 GGAATTTGAG TCCATTCT TTTTTTGAAA chr1:235573961-235574041 65 3.48e-04 atttcccccc tccctttt acgagaga -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCATCTT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:14077550-14077630 1.6e-05 39_[+2]_33 chr10:75939048-75939128 1.6e-05 31_[+2]_41 chr16:50528584-50528664 1.6e-05 42_[+2]_30 chr5:70694873-70694953 1.6e-05 34_[+2]_38 chr2:97078460-97078540 1.6e-05 51_[+2]_21 chr1:211884034-211884114 1.6e-05 45_[+2]_27 chr7:75431200-75431280 1.6e-05 6_[+2]_66 chr1:147144008-147144088 1.6e-05 29_[+2]_43 chr16:26981042-26981122 1.6e-05 49_[+2]_23 chr13:37436285-37436365 1.6e-05 38_[+2]_34 chr15:66893992-66894072 1.6e-05 24_[+2]_48 chr2:112337298-112337378 1.6e-05 60_[+2]_12 chrX:3488849-3488929 1.6e-05 28_[+2]_44 chr1:145090121-145090201 1.6e-05 35_[+2]_37 chr16:50491951-50492031 1.6e-05 51_[+2]_21 chr20:1182824-1182904 1.6e-05 26_[+2]_46 chr21:40731498-40731578 1.6e-05 47_[+2]_25 chr14:71320490-71320570 1.6e-05 27_[+2]_45 chr2:65028079-65028159 1.6e-05 4_[+2]_68 chr7:71454954-71455034 1.6e-05 15_[+2]_57 chr3:127451812-127451892 1.6e-05 15_[+2]_57 chr16:16286853-16286933 1.6e-05 [+2]_72 chr12:125115432-12511551 1.6e-05 45_[+2]_27 chr4:165972109-165972189 1.6e-05 31_[+2]_41 chr21:45633732-45633812 1.6e-05 54_[+2]_18 chr7:157103733-157103813 1.6e-05 31_[+2]_41 chr22:39167987-39168067 1.6e-05 62_[+2]_10 chr5:79555479-79555559 1.6e-05 28_[+2]_44 chr1:203748111-203748191 1.6e-05 57_[+2]_15 chr7:128429868-128429948 1.6e-05 52_[+2]_20 chr5:132307646-132307726 1.6e-05 60_[+2]_12 chr2:10362841-10362921 1.6e-05 29_[+2]_43 chr10:30396006-30396086 1.6e-05 70_[+2]_2 chr7:135594157-135594237 1.6e-05 41_[+2]_31 chr11:61407365-61407445 1.6e-05 45_[+2]_27 chr2:171110813-171110893 1.6e-05 50_[+2]_22 chr10:33345932-33346012 1.6e-05 38_[+2]_34 chr5:77074381-77074461 1.6e-05 33_[+2]_39 chr8:9885496-9885576 1.6e-05 58_[+2]_14 chr1:167130635-167130715 1.6e-05 48_[+2]_24 chr1:211880075-211880155 1.6e-05 18_[+2]_54 chr11:133922684-13392276 1.6e-05 70_[+2]_2 chr7:30767732-30767812 1.6e-05 48_[+2]_24 chr11:76764469-76764549 3.2e-05 49_[+2]_23 chr1:185310691-185310771 3.2e-05 29_[+2]_43 chr9:123981104-123981184 3.2e-05 59_[+2]_13 chr6:37396487-37396567 3.2e-05 71_[+2]_1 chr1:25005047-25005127 3.2e-05 46_[+2]_26 chr1:150681678-150681758 3.2e-05 49_[+2]_23 chr6:137692555-137692635 3.2e-05 62_[+2]_10 chr20:61895477-61895557 3.2e-05 4_[+2]_68 chr9:99994431-99994511 3.2e-05 53_[+2]_19 chr3:32090160-32090240 3.2e-05 48_[+2]_24 chr9:100812804-100812884 3.2e-05 28_[+2]_44 chr4:76755737-76755817 3.2e-05 69_[+2]_3 chr4:582363-582443 4.7e-05 45_[+2]_27 chr18:20048401-20048481 4.7e-05 50_[+2]_22 chr6:144128006-144128086 6.3e-05 54_[+2]_18 chr6:91167175-91167255 7.8e-05 9_[+2]_63 chr5:96376995-96377075 0.00011 7_[+2]_65 chr8:129440201-129440281 0.00011 37_[+2]_35 chr1:234681714-234681794 0.00011 60_[+2]_12 chr6:109745702-109745782 0.00011 51_[+2]_21 chr10:89410748-89410828 0.00013 54_[+2]_18 chr10:4909406-4909486 0.00014 72_[+2] chr4:110671980-110672060 0.00014 67_[+2]_5 chr15:57075549-57075629 0.00022 12_[+2]_60 chr8:9408851-9408931 0.00022 64_[+2]_8 chr6:158130769-158130849 0.00022 19_[+2]_53 chr21:46265422-46265502 0.00023 70_[+2]_2 chr10:73512881-73512961 0.00025 7_[+2]_65 chr7:24818293-24818373 0.00027 46_[+2]_26 chr7:66824974-66825054 0.00035 31_[+2]_41 chr1:235573961-235574041 0.00035 64_[+2]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCATCTT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCCATCTT width=8 seqs=74 chr6:14077550-14077630 ( 40) TCCATCTT 1 chr10:75939048-75939128 ( 32) TCCATCTT 1 chr16:50528584-50528664 ( 43) TCCATCTT 1 chr5:70694873-70694953 ( 35) TCCATCTT 1 chr2:97078460-97078540 ( 52) TCCATCTT 1 chr1:211884034-211884114 ( 46) TCCATCTT 1 chr7:75431200-75431280 ( 7) TCCATCTT 1 chr1:147144008-147144088 ( 30) TCCATCTT 1 chr16:26981042-26981122 ( 50) TCCATCTT 1 chr13:37436285-37436365 ( 39) TCCATCTT 1 chr15:66893992-66894072 ( 25) TCCATCTT 1 chr2:112337298-112337378 ( 61) TCCATCTT 1 chrX:3488849-3488929 ( 29) TCCATCTT 1 chr1:145090121-145090201 ( 36) TCCATCTT 1 chr16:50491951-50492031 ( 52) TCCATCTT 1 chr20:1182824-1182904 ( 27) TCCATCTT 1 chr21:40731498-40731578 ( 48) TCCATCTT 1 chr14:71320490-71320570 ( 28) TCCATCTT 1 chr2:65028079-65028159 ( 5) TCCATCTT 1 chr7:71454954-71455034 ( 16) TCCATCTT 1 chr3:127451812-127451892 ( 16) TCCATCTT 1 chr16:16286853-16286933 ( 1) TCCATCTT 1 chr12:125115432-12511551 ( 46) TCCATCTT 1 chr4:165972109-165972189 ( 32) TCCATCTT 1 chr21:45633732-45633812 ( 55) TCCATCTT 1 chr7:157103733-157103813 ( 32) TCCATCTT 1 chr22:39167987-39168067 ( 63) TCCATCTT 1 chr5:79555479-79555559 ( 29) TCCATCTT 1 chr1:203748111-203748191 ( 58) TCCATCTT 1 chr7:128429868-128429948 ( 53) TCCATCTT 1 chr5:132307646-132307726 ( 61) TCCATCTT 1 chr2:10362841-10362921 ( 30) TCCATCTT 1 chr10:30396006-30396086 ( 71) TCCATCTT 1 chr7:135594157-135594237 ( 42) TCCATCTT 1 chr11:61407365-61407445 ( 46) TCCATCTT 1 chr2:171110813-171110893 ( 51) TCCATCTT 1 chr10:33345932-33346012 ( 39) TCCATCTT 1 chr5:77074381-77074461 ( 34) TCCATCTT 1 chr8:9885496-9885576 ( 59) TCCATCTT 1 chr1:167130635-167130715 ( 49) TCCATCTT 1 chr1:211880075-211880155 ( 19) TCCATCTT 1 chr11:133922684-13392276 ( 71) TCCATCTT 1 chr7:30767732-30767812 ( 49) TCCATCTT 1 chr11:76764469-76764549 ( 50) TCCATTTT 1 chr1:185310691-185310771 ( 30) TCCATTTT 1 chr9:123981104-123981184 ( 60) TCCATTTT 1 chr6:37396487-37396567 ( 72) TCCATTTT 1 chr1:25005047-25005127 ( 47) TCCATTTT 1 chr1:150681678-150681758 ( 50) TCCATTTT 1 chr6:137692555-137692635 ( 63) TCCATTTT 1 chr20:61895477-61895557 ( 5) TCCATTTT 1 chr9:99994431-99994511 ( 54) TCCATTTT 1 chr3:32090160-32090240 ( 49) TCCATTTT 1 chr9:100812804-100812884 ( 29) TCCATTTT 1 chr4:76755737-76755817 ( 70) TCCATTTT 1 chr4:582363-582443 ( 46) GCCATCTT 1 chr18:20048401-20048481 ( 51) GCCATCTT 1 chr6:144128006-144128086 ( 55) TCCAGCTT 1 chr6:91167175-91167255 ( 10) TCCATCTC 1 chr5:96376995-96377075 ( 8) GCCATTTT 1 chr8:129440201-129440281 ( 38) GCCATTTT 1 chr1:234681714-234681794 ( 61) GCCATTTT 1 chr6:109745702-109745782 ( 52) TTCATCTT 1 chr10:89410748-89410828 ( 55) TCCATATT 1 chr10:4909406-4909486 ( 73) TCCAGTTT 1 chr4:110671980-110672060 ( 68) TCCAGTTT 1 chr15:57075549-57075629 ( 13) ACCATCTT 1 chr8:9408851-9408931 ( 65) TCCATCTG 1 chr6:158130769-158130849 ( 20) TCCGTCTT 1 chr21:46265422-46265502 ( 71) TGCATCTT 1 chr10:73512881-73512961 ( 8) TCCATTTC 1 chr7:24818293-24818373 ( 47) TTCATTTT 1 chr7:66824974-66825054 ( 32) TCCATTCT 1 chr1:235573961-235574041 ( 65) TCCCTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCATCTT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.10599 E= 5.5e-078 -423 -1285 -186 185 -1285 197 -418 -324 -1285 203 -1285 -1285 194 -418 -418 -1285 -1285 -1285 -260 191 -423 152 -1285 15 -1285 -418 -1285 195 -1285 -318 -418 191 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCATCTT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 74 E= 5.5e-078 0.013514 0.000000 0.067568 0.918919 0.000000 0.959459 0.013514 0.027027 0.000000 1.000000 0.000000 0.000000 0.972973 0.013514 0.013514 0.000000 0.000000 0.000000 0.040541 0.959459 0.013514 0.702703 0.000000 0.283784 0.000000 0.013514 0.000000 0.986486 0.000000 0.027027 0.013514 0.959459 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCATCTT MEME-2 regular expression -------------------------------------------------------------------------------- TCCAT[CT]TT -------------------------------------------------------------------------------- Time 8.51 secs. ******************************************************************************** ******************************************************************************** MOTIF TKAMCCAG MEME-3 width = 8 sites = 70 llr = 634 E-value = 1.4e-063 ******************************************************************************** -------------------------------------------------------------------------------- Motif TKAMCCAG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::a5::a: pos.-specific C :1:5aa:1 probability G :5:::::9 matrix T a4:::::: bits 2.0 * * *** 1.8 * * *** 1.6 * * **** 1.4 * * **** Relative 1.2 * * **** Entropy 1.0 * * **** (13.1 bits) 0.8 * ****** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGAACCAG consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKAMCCAG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:62332801-62332881 52 6.07e-05 cagcctcatt ttacccag cgctattcaa chr15:45876408-45876488 4 6.07e-05 att ttacccag tcctattcaa chr21:34673053-34673133 67 6.07e-05 cagaggtgtt tgaaccag agcgac chr16:50528584-50528664 29 6.07e-05 cagaggcatt tgaaccag cccaactcca chr15:90325460-90325540 73 6.07e-05 cagaggtgtt tgaaccag chr10:104215224-10421530 13 6.07e-05 tcccactatg ttacccag gctggtcttg chr6:158176242-158176322 48 6.07e-05 ccgcctcatt ttacccag ctctgtattc chr9:117320125-117320205 19 6.07e-05 cagccttatt ttacccag ccccatattc chr3:37865994-37866074 58 6.07e-05 cagccttatt ttacccag cccctattca chr2:97078460-97078540 38 6.07e-05 cagaggcgtg ttaaccag agcaactcca chr1:211884034-211884114 32 6.07e-05 caggggcatg tgaaccag agcaactcca chr18:71856607-71856687 33 6.07e-05 cagcctcatt ttacccag ctcctattca chr6:159133031-159133111 28 6.07e-05 cggcctcatt ttacccag ctcctattca chr17:60712107-60712187 29 6.07e-05 cagcctcgtt ttacccag ccccttttaa chr13:37436285-37436365 25 6.07e-05 cacagccatt tgaaccag agcaactcca chr1:31611936-31612016 11 6.07e-05 ctgccttatt ttacccag cccctattca chr6:5542450-5542530 23 6.07e-05 catccttatt ttacccag ctcctactca chr20:1182824-1182904 13 6.07e-05 cagtggcatt tgaaccag agtaactcca chr21:40731498-40731578 34 6.07e-05 cagaggcgtt tgaaccag agcgactcca chr14:71320490-71320570 14 6.07e-05 cagaggcatt tgaaccag agcaactcca chr3:138129204-138129284 6 6.07e-05 tcact ttacccag ccccctattc chr3:32090160-32090240 35 6.07e-05 cagaggtgtt tgaaccag agcaactcca chr9:110438186-110438266 45 6.07e-05 tagctttatt ttacccag cccctattca chr4:100656024-100656104 7 6.07e-05 ctcatt ttacccag ctcctattta chr12:65955723-65955803 70 6.07e-05 cagaggcatt tgaaccag agc chr3:127451812-127451892 2 6.07e-05 t tgaaccag agcaactcca chr20:48379611-48379691 18 6.07e-05 catccacatt ttacccag cccctattcc chr1:203569502-203569582 30 6.07e-05 cagccttatt ttacccag ctcctagtca chr12:125115432-12511551 32 6.07e-05 gagaggcgtg tgaaccag agcaactcca chr5:1131984-1132064 61 6.07e-05 caggggcgtt tgaaccag agtgactcca chr16:65798785-65798865 64 6.07e-05 cagaggcatt tgaaccag agtgactcc chr17:75084054-75084134 8 6.07e-05 ctttatt ttacccag cccctattca chr4:165972109-165972189 18 6.07e-05 cagaggtgtc tgaaccag agcaactcca chr7:123633152-123633232 12 6.07e-05 cagcctcatt ttacccag ccctattcaa chr21:45633732-45633812 41 6.07e-05 cagaggtatt tgaaccag agtgactcca chr1:162465760-162465840 38 6.07e-05 gagccttatt ttacccag ctcctattca chr22:39167987-39168067 49 6.07e-05 cagaggcttg tgaaccag agcaactcca chr5:79555479-79555559 15 6.07e-05 cagaggcatt tgaaccag agagactcca chr10:12486263-12486343 6 6.07e-05 ttatt ttacccag ctcctattca chr1:235573961-235574041 2 6.07e-05 t ttacccag ctcctattca chr2:10362841-10362921 16 6.07e-05 cagaggcgtt tgaaccag agcgactcca chr12:52514993-52515073 41 6.07e-05 cagcctcatt ttacccag cccctattca chr14:31706695-31706775 4 6.07e-05 att ttacccag ctcctattca chr7:135594157-135594237 28 6.07e-05 tcaaaagtgc ttaaccag agcaactcca chr11:61407365-61407445 32 6.07e-05 cagagatgtt tgaaccag agcaactcca chr6:41260560-41260640 49 6.07e-05 cagcctcatt ttacccag ctcctattca chr11:63298763-63298843 57 6.07e-05 gcaacttttt tgaaccag tactgctcct chr9:71922424-71922504 8 6.07e-05 ccttatt ttacccag ttcttattcg chr7:71100984-71101064 55 6.07e-05 cagccttatt ttacccag cccctattca chr8:9885496-9885576 45 6.07e-05 cagaggcatt tgaaccag agcaactcca chr1:167130635-167130715 35 6.07e-05 cagaggcatg tgaaccag agtgactcca chr1:211880075-211880155 5 6.07e-05 cgtg tgaaccag aacaactcca chr6:158130769-158130849 6 6.07e-05 gcgtg tgaaccag agcaactccg chr2:205052398-205052478 31 6.07e-05 cagtcttatt ttacccag cccctattca chr7:30767732-30767812 35 6.07e-05 cagaggtgtg tgaaccag agcaactcca chr10:89410748-89410828 41 6.07e-05 tagaggcatt tgaaccag agtgactcca chr12:113015437-11301551 8 6.07e-05 ccttatt ttacccag cccctattca chr1:1071241-1071321 36 9.04e-05 caTAAAGACC TCAACCAG GCTGGTCTCA chr1:9835281-9835361 18 9.04e-05 caaccttatt tcacccag accctattca chr5:2156578-2156658 26 9.04e-05 cattcccatc tcacccag cccctggcta chr12:132038134-13203821 38 9.04e-05 cagccttatt tcacccag cccctactca chr9:139098784-139098864 44 1.21e-04 GTGTCTTCAA TAACCCAG GCCTGCACTG chr6:43894902-43894982 45 1.21e-04 ATAGCCCTCT TAACCCAG CCATTGTCTA chr10:30396006-30396086 57 1.21e-04 cagagatgtt taaaccag agcgactcca chr5:70694873-70694953 21 1.82e-04 cagaggcctt tgaaccac agcaactcca chr15:58242750-58242830 43 1.82e-04 TCAGTCTGGA TTACCCAC TAAGCAGACC chrX:3488849-3488929 15 1.82e-04 cagagacatt tgaaccac agcaactcca chr6:109745702-109745782 38 1.82e-04 cagaggcacg tgaaccac agcaacttca chr10:75939048-75939128 18 2.12e-04 cagaggcatt tgagccag agcgactcca chr7:128429868-128429948 39 2.12e-04 cagagacatt tgagccag agcaactcca -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKAMCCAG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:62332801-62332881 6.1e-05 51_[+3]_21 chr15:45876408-45876488 6.1e-05 3_[+3]_69 chr21:34673053-34673133 6.1e-05 66_[+3]_6 chr16:50528584-50528664 6.1e-05 28_[+3]_44 chr15:90325460-90325540 6.1e-05 72_[+3] chr10:104215224-10421530 6.1e-05 12_[+3]_60 chr6:158176242-158176322 6.1e-05 47_[+3]_25 chr9:117320125-117320205 6.1e-05 18_[+3]_54 chr3:37865994-37866074 6.1e-05 57_[+3]_15 chr2:97078460-97078540 6.1e-05 37_[+3]_35 chr1:211884034-211884114 6.1e-05 31_[+3]_41 chr18:71856607-71856687 6.1e-05 32_[+3]_40 chr6:159133031-159133111 6.1e-05 27_[+3]_45 chr17:60712107-60712187 6.1e-05 28_[+3]_44 chr13:37436285-37436365 6.1e-05 24_[+3]_48 chr1:31611936-31612016 6.1e-05 10_[+3]_62 chr6:5542450-5542530 6.1e-05 22_[+3]_50 chr20:1182824-1182904 6.1e-05 12_[+3]_60 chr21:40731498-40731578 6.1e-05 33_[+3]_39 chr14:71320490-71320570 6.1e-05 13_[+3]_59 chr3:138129204-138129284 6.1e-05 5_[+3]_67 chr3:32090160-32090240 6.1e-05 34_[+3]_38 chr9:110438186-110438266 6.1e-05 44_[+3]_28 chr4:100656024-100656104 6.1e-05 6_[+3]_66 chr12:65955723-65955803 6.1e-05 69_[+3]_3 chr3:127451812-127451892 6.1e-05 1_[+3]_71 chr20:48379611-48379691 6.1e-05 17_[+3]_55 chr1:203569502-203569582 6.1e-05 29_[+3]_43 chr12:125115432-12511551 6.1e-05 31_[+3]_41 chr5:1131984-1132064 6.1e-05 60_[+3]_12 chr16:65798785-65798865 6.1e-05 63_[+3]_9 chr17:75084054-75084134 6.1e-05 7_[+3]_65 chr4:165972109-165972189 6.1e-05 17_[+3]_55 chr7:123633152-123633232 6.1e-05 11_[+3]_61 chr21:45633732-45633812 6.1e-05 40_[+3]_32 chr1:162465760-162465840 6.1e-05 37_[+3]_35 chr22:39167987-39168067 6.1e-05 48_[+3]_24 chr5:79555479-79555559 6.1e-05 14_[+3]_58 chr10:12486263-12486343 6.1e-05 5_[+3]_67 chr1:235573961-235574041 6.1e-05 1_[+3]_71 chr2:10362841-10362921 6.1e-05 15_[+3]_57 chr12:52514993-52515073 6.1e-05 40_[+3]_32 chr14:31706695-31706775 6.1e-05 3_[+3]_69 chr7:135594157-135594237 6.1e-05 27_[+3]_45 chr11:61407365-61407445 6.1e-05 31_[+3]_41 chr6:41260560-41260640 6.1e-05 48_[+3]_24 chr11:63298763-63298843 6.1e-05 56_[+3]_16 chr9:71922424-71922504 6.1e-05 7_[+3]_65 chr7:71100984-71101064 6.1e-05 54_[+3]_18 chr8:9885496-9885576 6.1e-05 44_[+3]_28 chr1:167130635-167130715 6.1e-05 34_[+3]_38 chr1:211880075-211880155 6.1e-05 4_[+3]_68 chr6:158130769-158130849 6.1e-05 5_[+3]_67 chr2:205052398-205052478 6.1e-05 30_[+3]_42 chr7:30767732-30767812 6.1e-05 34_[+3]_38 chr10:89410748-89410828 6.1e-05 40_[+3]_32 chr12:113015437-11301551 6.1e-05 7_[+3]_65 chr1:1071241-1071321 9e-05 35_[+3]_37 chr1:9835281-9835361 9e-05 17_[+3]_55 chr5:2156578-2156658 9e-05 25_[+3]_47 chr12:132038134-13203821 9e-05 37_[+3]_35 chr9:139098784-139098864 0.00012 43_[+3]_29 chr6:43894902-43894982 0.00012 44_[+3]_28 chr10:30396006-30396086 0.00012 56_[+3]_16 chr5:70694873-70694953 0.00018 20_[+3]_52 chr15:58242750-58242830 0.00018 42_[+3]_30 chrX:3488849-3488929 0.00018 14_[+3]_58 chr6:109745702-109745782 0.00018 37_[+3]_35 chr10:75939048-75939128 0.00021 17_[+3]_55 chr7:128429868-128429948 0.00021 38_[+3]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKAMCCAG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TKAMCCAG width=8 seqs=70 chr1:62332801-62332881 ( 52) TTACCCAG 1 chr15:45876408-45876488 ( 4) TTACCCAG 1 chr21:34673053-34673133 ( 67) TGAACCAG 1 chr16:50528584-50528664 ( 29) TGAACCAG 1 chr15:90325460-90325540 ( 73) TGAACCAG 1 chr10:104215224-10421530 ( 13) TTACCCAG 1 chr6:158176242-158176322 ( 48) TTACCCAG 1 chr9:117320125-117320205 ( 19) TTACCCAG 1 chr3:37865994-37866074 ( 58) TTACCCAG 1 chr2:97078460-97078540 ( 38) TTAACCAG 1 chr1:211884034-211884114 ( 32) TGAACCAG 1 chr18:71856607-71856687 ( 33) TTACCCAG 1 chr6:159133031-159133111 ( 28) TTACCCAG 1 chr17:60712107-60712187 ( 29) TTACCCAG 1 chr13:37436285-37436365 ( 25) TGAACCAG 1 chr1:31611936-31612016 ( 11) TTACCCAG 1 chr6:5542450-5542530 ( 23) TTACCCAG 1 chr20:1182824-1182904 ( 13) TGAACCAG 1 chr21:40731498-40731578 ( 34) TGAACCAG 1 chr14:71320490-71320570 ( 14) TGAACCAG 1 chr3:138129204-138129284 ( 6) TTACCCAG 1 chr3:32090160-32090240 ( 35) TGAACCAG 1 chr9:110438186-110438266 ( 45) TTACCCAG 1 chr4:100656024-100656104 ( 7) TTACCCAG 1 chr12:65955723-65955803 ( 70) TGAACCAG 1 chr3:127451812-127451892 ( 2) TGAACCAG 1 chr20:48379611-48379691 ( 18) TTACCCAG 1 chr1:203569502-203569582 ( 30) TTACCCAG 1 chr12:125115432-12511551 ( 32) TGAACCAG 1 chr5:1131984-1132064 ( 61) TGAACCAG 1 chr16:65798785-65798865 ( 64) TGAACCAG 1 chr17:75084054-75084134 ( 8) TTACCCAG 1 chr4:165972109-165972189 ( 18) TGAACCAG 1 chr7:123633152-123633232 ( 12) TTACCCAG 1 chr21:45633732-45633812 ( 41) TGAACCAG 1 chr1:162465760-162465840 ( 38) TTACCCAG 1 chr22:39167987-39168067 ( 49) TGAACCAG 1 chr5:79555479-79555559 ( 15) TGAACCAG 1 chr10:12486263-12486343 ( 6) TTACCCAG 1 chr1:235573961-235574041 ( 2) TTACCCAG 1 chr2:10362841-10362921 ( 16) TGAACCAG 1 chr12:52514993-52515073 ( 41) TTACCCAG 1 chr14:31706695-31706775 ( 4) TTACCCAG 1 chr7:135594157-135594237 ( 28) TTAACCAG 1 chr11:61407365-61407445 ( 32) TGAACCAG 1 chr6:41260560-41260640 ( 49) TTACCCAG 1 chr11:63298763-63298843 ( 57) TGAACCAG 1 chr9:71922424-71922504 ( 8) TTACCCAG 1 chr7:71100984-71101064 ( 55) TTACCCAG 1 chr8:9885496-9885576 ( 45) TGAACCAG 1 chr1:167130635-167130715 ( 35) TGAACCAG 1 chr1:211880075-211880155 ( 5) TGAACCAG 1 chr6:158130769-158130849 ( 6) TGAACCAG 1 chr2:205052398-205052478 ( 31) TTACCCAG 1 chr7:30767732-30767812 ( 35) TGAACCAG 1 chr10:89410748-89410828 ( 41) TGAACCAG 1 chr12:113015437-11301551 ( 8) TTACCCAG 1 chr1:1071241-1071321 ( 36) TCAACCAG 1 chr1:9835281-9835361 ( 18) TCACCCAG 1 chr5:2156578-2156658 ( 26) TCACCCAG 1 chr12:132038134-13203821 ( 38) TCACCCAG 1 chr9:139098784-139098864 ( 44) TAACCCAG 1 chr6:43894902-43894982 ( 45) TAACCCAG 1 chr10:30396006-30396086 ( 57) TAAACCAG 1 chr5:70694873-70694953 ( 21) TGAACCAC 1 chr15:58242750-58242830 ( 43) TTACCCAC 1 chrX:3488849-3488929 ( 15) TGAACCAC 1 chr6:109745702-109745782 ( 38) TGAACCAC 1 chr10:75939048-75939128 ( 18) TGAGCCAG 1 chr7:128429868-128429948 ( 39) TGAGCCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKAMCCAG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.12365 E= 1.4e-063 -1277 -1277 -1277 197 -257 -210 89 80 198 -1277 -1277 -1277 93 99 -310 -1277 -1277 203 -1277 -1277 -1277 203 -1277 -1277 198 -1277 -1277 -1277 -1277 -210 194 -1277 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKAMCCAG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 70 E= 1.4e-063 0.000000 0.000000 0.000000 1.000000 0.042857 0.057143 0.457143 0.442857 1.000000 0.000000 0.000000 0.000000 0.485714 0.485714 0.028571 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.057143 0.942857 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKAMCCAG MEME-3 regular expression -------------------------------------------------------------------------------- T[GT]A[AC]CCAG -------------------------------------------------------------------------------- Time 11.92 secs. ******************************************************************************** ******************************************************************************** MOTIF SKCTGGKT MEME-4 width = 8 sites = 81 llr = 667 E-value = 5.3e-052 ******************************************************************************** -------------------------------------------------------------------------------- Motif SKCTGGKT MEME-4 Description -------------------------------------------------------------------------------- Simplified A 1::::::: pos.-specific C 5:a:::1: probability G 33::aa5: matrix T :6:a::4a bits 2.0 **** 1.8 **** * 1.6 **** * 1.4 **** * Relative 1.2 **** * Entropy 1.0 **** * (11.9 bits) 0.8 ***** * 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTCTGGGT consensus GG T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SKCTGGKT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:20273200-20273280 29 3.02e-05 gatggagttg ctctggtt caaatgcctc chr2:55343091-55343171 37 3.02e-05 AGCAAAGACC CTCTGGGT GCATTCAACA chr15:68193173-68193253 37 3.02e-05 gatggagttg ctctggtt ccagtgcttc chr20:46768481-46768561 12 3.02e-05 gatggagttg ctctggtt caagtgcctc chr1:1071241-1071321 5 3.02e-05 gttg ctctggtt caaaggtctc chr16:57143808-57143888 9 3.02e-05 tggagttg ctctggtt taaacgcctc chr18:71856607-71856687 62 3.02e-05 gatggagttg ctctggtt cacatgcctc chr16:17176438-17176518 27 3.02e-05 gatggagtca ctctggtt agagcacctc chr17:60712107-60712187 58 3.02e-05 gatggagttg ctctggtt tgaacacctc chr8:9408851-9408931 4 3.02e-05 GTC CTCTGGGT GCCTTGCAGT chr1:9835281-9835361 47 3.02e-05 gatggagtcg ctctggtt caaatgcctc chr1:31611936-31612016 40 3.02e-05 gatggagttg ctctggtt caaatgcttc chr6:5542450-5542530 52 3.02e-05 gatggagtca ctctggtt cagatgcctt chr1:225654675-225654755 33 3.02e-05 gatggagttg ctctggtt cacacgcctc chr15:63816862-63816942 66 3.02e-05 gcatgttggt ctctgggt aattaga chr20:30593995-30594075 45 3.02e-05 gatggagttg ctctggtt caaacacttc chr20:48379611-48379691 47 3.02e-05 gatggagtcg ctctggtt ctaacacctc chr1:203569502-203569582 59 3.02e-05 aatggagtca ctctggtt caaatacctc chr17:48397148-48397228 42 3.02e-05 gatggagttg ctctggtt tcaacgcctc chr14:93042234-93042314 32 3.02e-05 atgggggtca ctctggtt cagacgGACA chr17:75084054-75084134 37 3.02e-05 gatggagttg ctctggtt caaacgcctc chr21:46265422-46265502 8 3.02e-05 ggagtca ctctggtt cgaacgcttc chr7:123633152-123633232 40 3.02e-05 gatggagtca ctctggtt ccaatgcttc chr1:162465760-162465840 67 3.02e-05 gatggagttg ctctggtt tgaaca chr10:12486263-12486343 35 3.02e-05 gatggagttg ctctggtt caaacgcctc chr1:235573961-235574041 31 3.02e-05 gatggagttg ctctggtt caaacgtctc chr14:31706695-31706775 33 3.02e-05 tatggagttg ctctggtt caaacacctc chr12:132038134-13203821 67 3.02e-05 aatgcagtca ctctggtt caaacg chr9:71922424-71922504 37 3.02e-05 gatggagttg ctctggtt caaacatctc chr6:26550565-26550645 16 3.02e-05 aatggagtcg ctctggtt cgaatgcctc chr11:133922684-13392276 32 3.02e-05 gatggagttg ctctggtt cagatgcctc chr2:205052398-205052478 60 3.02e-05 gatggagttg ctctggtt caaatgcctc chr2:11262762-11262842 6 3.02e-05 agttg ctctggtt tacatgcctc chr12:113015437-11301551 37 3.02e-05 gatggagttg ctctggtt caaatgcctc chr7:4933729-4933809 16 3.02e-05 gatggagtca ctctggtt caaacgcctc chr10:75939048-75939128 47 8.96e-05 cttgaatagg gtctgggt aaaataaggc chr4:100656024-100656104 36 8.96e-05 gatggagtta gtctggtt cacacacctc chr5:77074381-77074461 49 8.96e-05 cttgaatagg gtctgggt aatatgaggc chr6:14077550-14077630 54 1.19e-04 tcttgaatag ggctgggt aaaatgaggc chr11:76764469-76764549 65 1.19e-04 tttgaacacg ggctgggt aaaacgag chr16:50528584-50528664 58 1.19e-04 cttgaatagg ggctgggt aaaataaagc chr5:70694873-70694953 50 1.19e-04 cttgagtagg ggctgggt aaaataaggc chr1:25005047-25005127 62 1.19e-04 tttgaatagg ggctgggt aaaataaggc chr15:57075549-57075629 28 1.19e-04 cttgagcagg ggctgggt aaaacgaggc chr1:147144008-147144088 45 1.19e-04 cttgaatagc ggctgggt aaaatgaggc chrX:3488849-3488929 44 1.19e-04 cttgaatagg ggctgggt aaaatgaggc chr1:145090121-145090201 51 1.19e-04 cttgaatacg ggctgggt aaaatgaggc chr20:1182824-1182904 42 1.19e-04 cttgaatagg ggctgggt aaaatgagga chr3:32090160-32090240 64 1.19e-04 tttgaatagg ggctgggt aaaataagg chr3:127451812-127451892 31 1.19e-04 cttgaacggg ggctgggt aaaatgaggc chr19:49385498-49385578 67 1.19e-04 cttgaacagg ggctgggt aaaatg chr5:54117971-54118051 14 1.19e-04 cttgagtagg ggctgggt ataaaataaa chr2:10362841-10362921 49 1.19e-04 aatagggaag ggctgggt gaaataaggc chr11:61407365-61407445 61 1.19e-04 cttgaataga ggctgggt aaaatgaggc chr10:33345932-33346012 53 1.19e-04 tcttgaatag ggctgggt gaaataaggc chr1:167130635-167130715 64 1.19e-04 cttgaatagg ggctgggt aaaataagg chr15:45876408-45876488 32 1.65e-04 gatggagttg ctctggct caaatgcctc chr3:45147794-45147874 5 1.65e-04 GAGG CTCTGGCT TTCTATGGTT chr6:26550768-26550848 65 1.65e-04 CGCCCCGCCC CTCTGGCT GCTCCGCT chr9:88798403-88798483 33 1.65e-04 ttcctcatgt ctctggct agcctCTGGT chr5:95043451-95043531 27 2.24e-04 gatggagtct gtctggct ctcttagcta chr2:97078460-97078540 67 2.24e-04 cttgactaag agctgggt aaaatg chr1:211884034-211884114 61 2.24e-04 cttaaatagg agctgggt aaaatgaggc chr15:64086033-64086113 3 2.24e-04 gg agctgggt aaaatgaggc chr7:75431200-75431280 22 2.24e-04 cttgaatagg agctgggt aaaatgaggc chr14:71320490-71320570 43 2.24e-04 cttgaatagg agctgggt aaaataaggc chr6:10750905-10750985 60 2.24e-04 gatggagtct gtctggct ctcttagcta chr2:98328873-98328953 28 2.24e-04 gatggagtct gtctggct ctcttagcta chr6:26491980-26492060 45 2.24e-04 aatggagttt gtctggct ctctcagcta chr1:203748111-203748191 73 2.24e-04 cttaaatggc agctgggt chr7:128429868-128429948 68 2.24e-04 cttgaataga agctgggt aaaat chr6:109745702-109745782 67 2.24e-04 cttgaatagg agctgggt aaaatg chr7:135594157-135594237 57 2.24e-04 cttgaatagg agctgggt aaaatgaggc chr1:211880075-211880155 34 2.24e-04 cttgaatagg agctgggt aaaatgaggc chr5:1131984-1132064 39 2.67e-04 AGCTCACTGC CCCTGGTT Ctgtcagggg chr16:70780437-70780517 59 2.67e-04 AGCCGGGGAG CCCTGGGT GGGTCTCAGC chr9:139098784-139098864 1 3.12e-04 . GCCTGGTT TTCAAACTGG chr4:80132027-80132107 67 3.12e-04 caaagtggat gcctgggt cttttg chrX:1511638-1511718 38 3.41e-04 GGGGGGATCT CTCTGGGC CTCCGTTCTT chr11:68035417-68035497 43 3.41e-04 GCAAAGCTCC CTCTGGGC TCACCGTCCC chr1:167130837-167130917 42 3.41e-04 tgaaagtgac ctctggtc atcctcactg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SKCTGGKT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:20273200-20273280 3e-05 28_[+4]_44 chr2:55343091-55343171 3e-05 36_[+4]_36 chr15:68193173-68193253 3e-05 36_[+4]_36 chr20:46768481-46768561 3e-05 11_[+4]_61 chr1:1071241-1071321 3e-05 4_[+4]_68 chr16:57143808-57143888 3e-05 8_[+4]_64 chr18:71856607-71856687 3e-05 61_[+4]_11 chr16:17176438-17176518 3e-05 26_[+4]_46 chr17:60712107-60712187 3e-05 57_[+4]_15 chr8:9408851-9408931 3e-05 3_[+4]_69 chr1:9835281-9835361 3e-05 46_[+4]_26 chr1:31611936-31612016 3e-05 39_[+4]_33 chr6:5542450-5542530 3e-05 51_[+4]_21 chr1:225654675-225654755 3e-05 32_[+4]_40 chr15:63816862-63816942 3e-05 65_[+4]_7 chr20:30593995-30594075 3e-05 44_[+4]_28 chr20:48379611-48379691 3e-05 46_[+4]_26 chr1:203569502-203569582 3e-05 58_[+4]_14 chr17:48397148-48397228 3e-05 41_[+4]_31 chr14:93042234-93042314 3e-05 31_[+4]_41 chr17:75084054-75084134 3e-05 36_[+4]_36 chr21:46265422-46265502 3e-05 7_[+4]_65 chr7:123633152-123633232 3e-05 39_[+4]_33 chr1:162465760-162465840 3e-05 66_[+4]_6 chr10:12486263-12486343 3e-05 34_[+4]_38 chr1:235573961-235574041 3e-05 30_[+4]_42 chr14:31706695-31706775 3e-05 32_[+4]_40 chr12:132038134-13203821 3e-05 66_[+4]_6 chr9:71922424-71922504 3e-05 36_[+4]_36 chr6:26550565-26550645 3e-05 15_[+4]_57 chr11:133922684-13392276 3e-05 31_[+4]_41 chr2:205052398-205052478 3e-05 59_[+4]_13 chr2:11262762-11262842 3e-05 5_[+4]_67 chr12:113015437-11301551 3e-05 36_[+4]_36 chr7:4933729-4933809 3e-05 15_[+4]_57 chr10:75939048-75939128 9e-05 46_[+4]_26 chr4:100656024-100656104 9e-05 35_[+4]_37 chr5:77074381-77074461 9e-05 48_[+4]_24 chr6:14077550-14077630 0.00012 53_[+4]_19 chr11:76764469-76764549 0.00012 64_[+4]_8 chr16:50528584-50528664 0.00012 57_[+4]_15 chr5:70694873-70694953 0.00012 49_[+4]_23 chr1:25005047-25005127 0.00012 61_[+4]_11 chr15:57075549-57075629 0.00012 27_[+4]_45 chr1:147144008-147144088 0.00012 44_[+4]_28 chrX:3488849-3488929 0.00012 43_[+4]_29 chr1:145090121-145090201 0.00012 50_[+4]_22 chr20:1182824-1182904 0.00012 41_[+4]_31 chr3:32090160-32090240 0.00012 63_[+4]_9 chr3:127451812-127451892 0.00012 30_[+4]_42 chr19:49385498-49385578 0.00012 66_[+4]_6 chr5:54117971-54118051 0.00012 13_[+4]_59 chr2:10362841-10362921 0.00012 48_[+4]_24 chr11:61407365-61407445 0.00012 60_[+4]_12 chr10:33345932-33346012 0.00012 52_[+4]_20 chr1:167130635-167130715 0.00012 63_[+4]_9 chr15:45876408-45876488 0.00016 31_[+4]_41 chr3:45147794-45147874 0.00016 4_[+4]_68 chr6:26550768-26550848 0.00016 64_[+4]_8 chr9:88798403-88798483 0.00016 32_[+4]_40 chr5:95043451-95043531 0.00022 26_[+4]_46 chr2:97078460-97078540 0.00022 66_[+4]_6 chr1:211884034-211884114 0.00022 60_[+4]_12 chr15:64086033-64086113 0.00022 2_[+4]_70 chr7:75431200-75431280 0.00022 21_[+4]_51 chr14:71320490-71320570 0.00022 42_[+4]_30 chr6:10750905-10750985 0.00022 59_[+4]_13 chr2:98328873-98328953 0.00022 27_[+4]_45 chr6:26491980-26492060 0.00022 44_[+4]_28 chr1:203748111-203748191 0.00022 72_[+4] chr7:128429868-128429948 0.00022 67_[+4]_5 chr6:109745702-109745782 0.00022 66_[+4]_6 chr7:135594157-135594237 0.00022 56_[+4]_16 chr1:211880075-211880155 0.00022 33_[+4]_39 chr5:1131984-1132064 0.00027 38_[+4]_34 chr16:70780437-70780517 0.00027 58_[+4]_14 chr9:139098784-139098864 0.00031 [+4]_72 chr4:80132027-80132107 0.00031 66_[+4]_6 chrX:1511638-1511718 0.00034 37_[+4]_35 chr11:68035417-68035497 0.00034 42_[+4]_30 chr1:167130837-167130917 0.00034 41_[+4]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SKCTGGKT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SKCTGGKT width=8 seqs=81 chr6:20273200-20273280 ( 29) CTCTGGTT 1 chr2:55343091-55343171 ( 37) CTCTGGGT 1 chr15:68193173-68193253 ( 37) CTCTGGTT 1 chr20:46768481-46768561 ( 12) CTCTGGTT 1 chr1:1071241-1071321 ( 5) CTCTGGTT 1 chr16:57143808-57143888 ( 9) CTCTGGTT 1 chr18:71856607-71856687 ( 62) CTCTGGTT 1 chr16:17176438-17176518 ( 27) CTCTGGTT 1 chr17:60712107-60712187 ( 58) CTCTGGTT 1 chr8:9408851-9408931 ( 4) CTCTGGGT 1 chr1:9835281-9835361 ( 47) CTCTGGTT 1 chr1:31611936-31612016 ( 40) CTCTGGTT 1 chr6:5542450-5542530 ( 52) CTCTGGTT 1 chr1:225654675-225654755 ( 33) CTCTGGTT 1 chr15:63816862-63816942 ( 66) CTCTGGGT 1 chr20:30593995-30594075 ( 45) CTCTGGTT 1 chr20:48379611-48379691 ( 47) CTCTGGTT 1 chr1:203569502-203569582 ( 59) CTCTGGTT 1 chr17:48397148-48397228 ( 42) CTCTGGTT 1 chr14:93042234-93042314 ( 32) CTCTGGTT 1 chr17:75084054-75084134 ( 37) CTCTGGTT 1 chr21:46265422-46265502 ( 8) CTCTGGTT 1 chr7:123633152-123633232 ( 40) CTCTGGTT 1 chr1:162465760-162465840 ( 67) CTCTGGTT 1 chr10:12486263-12486343 ( 35) CTCTGGTT 1 chr1:235573961-235574041 ( 31) CTCTGGTT 1 chr14:31706695-31706775 ( 33) CTCTGGTT 1 chr12:132038134-13203821 ( 67) CTCTGGTT 1 chr9:71922424-71922504 ( 37) CTCTGGTT 1 chr6:26550565-26550645 ( 16) CTCTGGTT 1 chr11:133922684-13392276 ( 32) CTCTGGTT 1 chr2:205052398-205052478 ( 60) CTCTGGTT 1 chr2:11262762-11262842 ( 6) CTCTGGTT 1 chr12:113015437-11301551 ( 37) CTCTGGTT 1 chr7:4933729-4933809 ( 16) CTCTGGTT 1 chr10:75939048-75939128 ( 47) GTCTGGGT 1 chr4:100656024-100656104 ( 36) GTCTGGTT 1 chr5:77074381-77074461 ( 49) GTCTGGGT 1 chr6:14077550-14077630 ( 54) GGCTGGGT 1 chr11:76764469-76764549 ( 65) GGCTGGGT 1 chr16:50528584-50528664 ( 58) GGCTGGGT 1 chr5:70694873-70694953 ( 50) GGCTGGGT 1 chr1:25005047-25005127 ( 62) GGCTGGGT 1 chr15:57075549-57075629 ( 28) GGCTGGGT 1 chr1:147144008-147144088 ( 45) GGCTGGGT 1 chrX:3488849-3488929 ( 44) GGCTGGGT 1 chr1:145090121-145090201 ( 51) GGCTGGGT 1 chr20:1182824-1182904 ( 42) GGCTGGGT 1 chr3:32090160-32090240 ( 64) GGCTGGGT 1 chr3:127451812-127451892 ( 31) GGCTGGGT 1 chr19:49385498-49385578 ( 67) GGCTGGGT 1 chr5:54117971-54118051 ( 14) GGCTGGGT 1 chr2:10362841-10362921 ( 49) GGCTGGGT 1 chr11:61407365-61407445 ( 61) GGCTGGGT 1 chr10:33345932-33346012 ( 53) GGCTGGGT 1 chr1:167130635-167130715 ( 64) GGCTGGGT 1 chr15:45876408-45876488 ( 32) CTCTGGCT 1 chr3:45147794-45147874 ( 5) CTCTGGCT 1 chr6:26550768-26550848 ( 65) CTCTGGCT 1 chr9:88798403-88798483 ( 33) CTCTGGCT 1 chr5:95043451-95043531 ( 27) GTCTGGCT 1 chr2:97078460-97078540 ( 67) AGCTGGGT 1 chr1:211884034-211884114 ( 61) AGCTGGGT 1 chr15:64086033-64086113 ( 3) AGCTGGGT 1 chr7:75431200-75431280 ( 22) AGCTGGGT 1 chr14:71320490-71320570 ( 43) AGCTGGGT 1 chr6:10750905-10750985 ( 60) GTCTGGCT 1 chr2:98328873-98328953 ( 28) GTCTGGCT 1 chr6:26491980-26492060 ( 45) GTCTGGCT 1 chr1:203748111-203748191 ( 73) AGCTGGGT 1 chr7:128429868-128429948 ( 68) AGCTGGGT 1 chr6:109745702-109745782 ( 67) AGCTGGGT 1 chr7:135594157-135594237 ( 57) AGCTGGGT 1 chr1:211880075-211880155 ( 34) AGCTGGGT 1 chr5:1131984-1132064 ( 39) CCCTGGTT 1 chr16:70780437-70780517 ( 59) CCCTGGGT 1 chr9:139098784-139098864 ( 1) GCCTGGTT 1 chr4:80132027-80132107 ( 67) GCCTGGGT 1 chrX:1511638-1511718 ( 38) CTCTGGGC 1 chr11:68035417-68035497 ( 43) CTCTGGGC 1 chr1:167130837-167130917 ( 42) CTCTGGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SKCTGGKT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.07559 E= 5.3e-052 -104 115 44 -1298 -1298 -231 49 125 -1298 203 -1298 -1298 -1298 -1298 -1298 197 -1298 -1298 202 -1298 -1298 -1298 202 -1298 -1298 -131 89 80 -1298 -272 -1298 192 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SKCTGGKT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 81 E= 5.3e-052 0.123457 0.543210 0.333333 0.000000 0.000000 0.049383 0.345679 0.604938 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.098765 0.456790 0.444444 0.000000 0.037037 0.000000 0.962963 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SKCTGGKT MEME-4 regular expression -------------------------------------------------------------------------------- [CG][TG]CTGG[GT]T -------------------------------------------------------------------------------- Time 15.26 secs. ******************************************************************************** ******************************************************************************** MOTIF GTCAGAGG MEME-5 width = 8 sites = 46 llr = 438 E-value = 2.6e-037 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTCAGAGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A 1::a:a:1 pos.-specific C ::9::::: probability G 91::a:a9 matrix T :9:::::: bits 2.0 ** 1.8 ** * 1.6 * ***** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (13.7 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTCAGAGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCAGAGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:14077550-14077630 14 1.48e-05 ATATGGTTGt gtcagagg cattggaacc chr11:76764469-76764549 24 1.48e-05 AGGTCTCTCt gtcagagg cgttagaacc chr16:50528584-50528664 17 1.48e-05 tagccaTCCt gtcagagg catttgaacc chr15:90325460-90325540 61 1.48e-05 AGGTGGCATC gtcagagg tgtttgaacc chr5:70694873-70694953 9 1.48e-05 ttccttat gtcagagg cctttgaacc chr2:97078460-97078540 26 1.48e-05 gcaccactgt gtcagagg cgtgttaacc chr1:25005047-25005127 21 1.48e-05 aagtgctggt gtcagagg tgtTCAaacc chr1:147144008-147144088 4 1.48e-05 tct gtcagagg catttgaacc chr16:26981042-26981122 24 1.48e-05 tggtctcctt gtcagagg tgttcgaacc chr1:145090121-145090201 10 1.48e-05 AATGTAACt gtcagagg cattcaaatc chr21:40731498-40731578 22 1.48e-05 ggagaaatat gtcagagg cgtttgaacc chr14:71320490-71320570 2 1.48e-05 t gtcagagg catttgaacc chr3:32090160-32090240 23 1.48e-05 AGCTGGTCAt gtcagagg tgtttgaacc chr16:65798785-65798865 52 1.48e-05 tccagggact gtcagagg catttgaacc chr4:165972109-165972189 6 1.48e-05 ggagc gtcagagg tgtctgaacc chr21:45633732-45633812 29 1.48e-05 CCACCCCACt gtcagagg tatttgaacc chr22:39167987-39168067 37 1.48e-05 CTGTTGTCAt gtcagagg cttgtgaacc chr7:66824974-66825054 67 1.48e-05 TTTTACTCTt gtcagagg cattca chr5:79555479-79555559 3 1.48e-05 Gt gtcagagg catttgaacc chr1:203748111-203748191 32 1.48e-05 gagtgggtaa gtcagagg cactggaacc chr2:10362841-10362921 4 1.48e-05 TTt gtcagagg cgtttgaacc chr10:33345932-33346012 13 1.48e-05 gagtcaccat gtcagagg cattcaaacc chr5:77074381-77074461 8 1.48e-05 caggtgt gtcagagg tgtttgaacc chr8:9885496-9885576 33 1.48e-05 CCATCGTACt gtcagagg catttgaacc chr1:167130635-167130715 23 1.48e-05 TGGTGGATGt gtcagagg catgtgaacc chr7:30767732-30767812 23 1.48e-05 tcccccttct gtcagagg tgtgtgaacc chr9:88798403-88798483 54 1.48e-05 ctCTGGTGGt gtcagagg catttggacc chr15:41769406-41769486 31 2.90e-05 TGGAGGAACG GGCAGAGG CCCTGGACCG chr12:122851263-12285134 54 2.90e-05 gaaccaagga ggcagagg ttgcagtgag chr19:18475312-18475392 41 2.90e-05 gaacttggga ggcagagg ttgcagtgag chr1:1358097-1358177 3 2.90e-05 GG GGCAGAGG CCGCAGCCCC chrX:3488849-3488929 3 4.42e-05 TG gtcagaga catttgaacc chr7:128429868-128429948 27 4.42e-05 CCTGTGGGAt gtcagaga catttgagcc chr10:30396006-30396086 45 4.42e-05 TCATTTGATt gtcagaga tgtttaaacc chr11:61407365-61407445 20 4.42e-05 GCCTAGCAGC gtcagaga tgtttgaacc chr10:75939048-75939128 6 5.95e-05 TTCCt atcagagg catttgagcc chr16:50491951-50492031 26 5.95e-05 TGCTGGAATC Atcagagg cattcgaacc chr6:109745702-109745782 26 5.95e-05 GTCCCGTGGt atcagagg cacgtgaacc chr1:211884034-211884114 20 8.91e-05 gggggTCAAt gtcagggg catgtgaacc chr5:1131984-1132064 49 8.91e-05 CCCTGGTTCt gtcagggg cgtttgaacc chr5:132307646-132307726 36 8.91e-05 TGCTGAAATt gttagagg tgttccaaca chr10:89410748-89410828 29 8.91e-05 ACCACAAACt gttagagg catttgaacc chr12:65955723-65955803 58 1.04e-04 ATGAGAACCt gacagagg catttgaacc chr6:37396487-37396567 48 1.34e-04 tgcctggcct gtcagagt tttaaacatg chr12:125115432-12511551 20 1.34e-04 CTGTGGGAAt gtgagagg cgtgtgaacc chr16:26996513-26996593 70 1.49e-04 aagtgggctt gtcagaag tgt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCAGAGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:14077550-14077630 1.5e-05 13_[+5]_59 chr11:76764469-76764549 1.5e-05 23_[+5]_49 chr16:50528584-50528664 1.5e-05 16_[+5]_56 chr15:90325460-90325540 1.5e-05 60_[+5]_12 chr5:70694873-70694953 1.5e-05 8_[+5]_64 chr2:97078460-97078540 1.5e-05 25_[+5]_47 chr1:25005047-25005127 1.5e-05 20_[+5]_52 chr1:147144008-147144088 1.5e-05 3_[+5]_69 chr16:26981042-26981122 1.5e-05 23_[+5]_49 chr1:145090121-145090201 1.5e-05 9_[+5]_63 chr21:40731498-40731578 1.5e-05 21_[+5]_51 chr14:71320490-71320570 1.5e-05 1_[+5]_71 chr3:32090160-32090240 1.5e-05 22_[+5]_50 chr16:65798785-65798865 1.5e-05 51_[+5]_21 chr4:165972109-165972189 1.5e-05 5_[+5]_67 chr21:45633732-45633812 1.5e-05 28_[+5]_44 chr22:39167987-39168067 1.5e-05 36_[+5]_36 chr7:66824974-66825054 1.5e-05 66_[+5]_6 chr5:79555479-79555559 1.5e-05 2_[+5]_70 chr1:203748111-203748191 1.5e-05 31_[+5]_41 chr2:10362841-10362921 1.5e-05 3_[+5]_69 chr10:33345932-33346012 1.5e-05 12_[+5]_60 chr5:77074381-77074461 1.5e-05 7_[+5]_65 chr8:9885496-9885576 1.5e-05 32_[+5]_40 chr1:167130635-167130715 1.5e-05 22_[+5]_50 chr7:30767732-30767812 1.5e-05 22_[+5]_50 chr9:88798403-88798483 1.5e-05 53_[+5]_19 chr15:41769406-41769486 2.9e-05 30_[+5]_42 chr12:122851263-12285134 2.9e-05 53_[+5]_19 chr19:18475312-18475392 2.9e-05 40_[+5]_32 chr1:1358097-1358177 2.9e-05 2_[+5]_70 chrX:3488849-3488929 4.4e-05 2_[+5]_70 chr7:128429868-128429948 4.4e-05 26_[+5]_46 chr10:30396006-30396086 4.4e-05 44_[+5]_28 chr11:61407365-61407445 4.4e-05 19_[+5]_53 chr10:75939048-75939128 5.9e-05 5_[+5]_67 chr16:50491951-50492031 5.9e-05 25_[+5]_47 chr6:109745702-109745782 5.9e-05 25_[+5]_47 chr1:211884034-211884114 8.9e-05 19_[+5]_53 chr5:1131984-1132064 8.9e-05 48_[+5]_24 chr5:132307646-132307726 8.9e-05 35_[+5]_37 chr10:89410748-89410828 8.9e-05 28_[+5]_44 chr12:65955723-65955803 0.0001 57_[+5]_15 chr6:37396487-37396567 0.00013 47_[+5]_25 chr12:125115432-12511551 0.00013 19_[+5]_53 chr16:26996513-26996593 0.00015 69_[+5]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCAGAGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTCAGAGG width=8 seqs=46 chr6:14077550-14077630 ( 14) GTCAGAGG 1 chr11:76764469-76764549 ( 24) GTCAGAGG 1 chr16:50528584-50528664 ( 17) GTCAGAGG 1 chr15:90325460-90325540 ( 61) GTCAGAGG 1 chr5:70694873-70694953 ( 9) GTCAGAGG 1 chr2:97078460-97078540 ( 26) GTCAGAGG 1 chr1:25005047-25005127 ( 21) GTCAGAGG 1 chr1:147144008-147144088 ( 4) GTCAGAGG 1 chr16:26981042-26981122 ( 24) GTCAGAGG 1 chr1:145090121-145090201 ( 10) GTCAGAGG 1 chr21:40731498-40731578 ( 22) GTCAGAGG 1 chr14:71320490-71320570 ( 2) GTCAGAGG 1 chr3:32090160-32090240 ( 23) GTCAGAGG 1 chr16:65798785-65798865 ( 52) GTCAGAGG 1 chr4:165972109-165972189 ( 6) GTCAGAGG 1 chr21:45633732-45633812 ( 29) GTCAGAGG 1 chr22:39167987-39168067 ( 37) GTCAGAGG 1 chr7:66824974-66825054 ( 67) GTCAGAGG 1 chr5:79555479-79555559 ( 3) GTCAGAGG 1 chr1:203748111-203748191 ( 32) GTCAGAGG 1 chr2:10362841-10362921 ( 4) GTCAGAGG 1 chr10:33345932-33346012 ( 13) GTCAGAGG 1 chr5:77074381-77074461 ( 8) GTCAGAGG 1 chr8:9885496-9885576 ( 33) GTCAGAGG 1 chr1:167130635-167130715 ( 23) GTCAGAGG 1 chr7:30767732-30767812 ( 23) GTCAGAGG 1 chr9:88798403-88798483 ( 54) GTCAGAGG 1 chr15:41769406-41769486 ( 31) GGCAGAGG 1 chr12:122851263-12285134 ( 54) GGCAGAGG 1 chr19:18475312-18475392 ( 41) GGCAGAGG 1 chr1:1358097-1358177 ( 3) GGCAGAGG 1 chrX:3488849-3488929 ( 3) GTCAGAGA 1 chr7:128429868-128429948 ( 27) GTCAGAGA 1 chr10:30396006-30396086 ( 45) GTCAGAGA 1 chr11:61407365-61407445 ( 20) GTCAGAGA 1 chr10:75939048-75939128 ( 6) ATCAGAGG 1 chr16:50491951-50492031 ( 26) ATCAGAGG 1 chr6:109745702-109745782 ( 26) ATCAGAGG 1 chr1:211884034-211884114 ( 20) GTCAGGGG 1 chr5:1131984-1132064 ( 49) GTCAGGGG 1 chr5:132307646-132307726 ( 36) GTTAGAGG 1 chr10:89410748-89410828 ( 29) GTTAGAGG 1 chr12:65955723-65955803 ( 58) GACAGAGG 1 chr6:37396487-37396567 ( 48) GTCAGAGT 1 chr12:125115432-12511551 ( 20) GTGAGAGG 1 chr16:26996513-26996593 ( 70) GTCAGAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCAGAGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.23435 E= 2.6e-037 -196 -1217 193 -1217 -354 -1217 -150 180 -1217 193 -350 -255 198 -1217 -1217 -1217 -1217 -1217 202 -1217 191 -1217 -250 -1217 -354 -1217 199 -1217 -155 -1217 186 -355 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCAGAGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 46 E= 2.6e-037 0.065217 0.000000 0.934783 0.000000 0.021739 0.000000 0.086957 0.891304 0.000000 0.934783 0.021739 0.043478 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.956522 0.000000 0.043478 0.000000 0.021739 0.000000 0.978261 0.000000 0.086957 0.000000 0.891304 0.021739 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCAGAGG MEME-5 regular expression -------------------------------------------------------------------------------- GTCAGAGG -------------------------------------------------------------------------------- Time 18.48 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:4933729-4933809 4.45e-04 4_[+1(1.53e-05)]_3_[+4(3.02e-05)]_\ 57 chr3:195688197-195688277 2.98e-01 80 chr6:6658147-6658227 2.44e-01 80 chr15:81062378-81062458 5.81e-01 80 chr12:113015437-11301551 2.11e-05 7_[+3(6.07e-05)]_10_[+1(1.53e-05)]_\ 3_[+4(3.02e-05)]_36 chr9:88798403-88798483 8.58e-04 53_[+5(1.48e-05)]_19 chr7:2996918-2996998 2.87e-02 80 chr10:89410748-89410828 1.08e-04 28_[+5(8.91e-05)]_4_[+3(6.07e-05)]_\ 32 chr2:113552603-113552683 8.73e-01 80 chr2:11262762-11262842 4.16e-03 5_[+4(3.02e-05)]_67 chr7:30767732-30767812 2.59e-07 22_[+5(1.48e-05)]_4_[+3(6.07e-05)]_\ 6_[+2(1.58e-05)]_24 chr20:3646904-3646984 5.36e-02 80 chr5:157353269-157353349 1.87e-03 6_[+1(1.53e-05)]_66 chr2:205052398-205052478 2.11e-05 30_[+3(6.07e-05)]_10_[+1(1.53e-05)]_\ 3_[+4(3.02e-05)]_13 chr6:158130769-158130849 1.68e-05 5_[+3(6.07e-05)]_67 chr12:121581405-12158148 3.82e-02 80 chr20:3646699-3646779 4.37e-01 80 chr11:133922684-13392276 3.40e-06 20_[+1(1.53e-05)]_3_[+4(3.02e-05)]_\ 31_[+2(1.58e-05)]_2 chr1:211880075-211880155 4.00e-06 4_[+3(6.07e-05)]_6_[+2(1.58e-05)]_\ 54 chr6:20273413-20273493 2.24e-03 39_[+1(4.59e-05)]_33 chr1:167130635-167130715 2.50e-08 22_[+5(1.48e-05)]_4_[+3(6.07e-05)]_\ 6_[+2(1.58e-05)]_24 chr6:26550565-26550645 1.65e-03 4_[+1(3.11e-05)]_3_[+4(3.02e-05)]_\ 57 chr8:9885496-9885576 3.52e-06 32_[+5(1.48e-05)]_4_[+3(6.07e-05)]_\ 6_[+2(1.58e-05)]_14 chr5:77074381-77074461 2.43e-07 7_[+5(1.48e-05)]_18_[+2(1.58e-05)]_\ 7_[+4(8.96e-05)]_24 chr10:33345932-33346012 5.54e-07 12_[+5(1.48e-05)]_18_[+2(1.58e-05)]_\ 34 chr7:156716250-156716330 2.90e-02 24_[+1(1.53e-05)]_10_[+1(1.53e-05)]_\ 30 chr1:68363202-68363282 3.47e-01 80 chr6:26550768-26550848 3.18e-01 80 chr1:228677964-228678044 3.39e-01 80 chr7:71100984-71101064 3.26e-03 54_[+3(6.07e-05)]_10_[+1(1.53e-05)] chr9:71922424-71922504 7.93e-06 7_[+3(6.07e-05)]_10_[+1(1.53e-05)]_\ 3_[+4(3.02e-05)]_36 chr12:9499626-9499706 9.46e-02 80 chr11:63298763-63298843 1.42e-02 56_[+3(6.07e-05)]_16 chr2:171110813-171110893 5.89e-02 50_[+2(1.58e-05)]_22 chr1:1358097-1358177 5.17e-02 2_[+5(2.90e-05)]_70 chr6:41260560-41260640 4.43e-04 48_[+3(6.07e-05)]_10_[+1(1.53e-05)]_\ 6 chr12:132109814-13210989 3.96e-01 80 chr11:61407365-61407445 3.50e-08 19_[+5(4.42e-05)]_4_[+3(6.07e-05)]_\ 6_[+2(1.58e-05)]_27 chr1:234679915-234679995 4.34e-01 80 chr12:132038134-13203821 1.44e-03 37_[+3(9.04e-05)]_21_[+4(3.02e-05)]_\ 6 chr6:34688102-34688182 2.06e-02 29_[+1(3.11e-05)]_43 chr7:135594157-135594237 2.62e-06 27_[+3(6.07e-05)]_6_[+2(1.58e-05)]_\ 31 chr10:30396006-30396086 1.27e-04 44_[+5(4.42e-05)]_18_[+2(1.58e-05)]_\ 2 chr14:31706695-31706775 3.24e-04 3_[+3(6.07e-05)]_21_[+4(3.02e-05)]_\ 40 chr12:52514993-52515073 2.20e-04 40_[+3(6.07e-05)]_10_[+1(1.53e-05)]_\ 14 chr2:10362841-10362921 2.50e-08 3_[+5(1.48e-05)]_4_[+3(6.07e-05)]_6_\ [+2(1.58e-05)]_43 chr22:19930849-19930929 7.42e-01 80 chr1:235573961-235574041 2.19e-06 1_[+3(6.07e-05)]_10_[+1(1.53e-05)]_\ 3_[+4(3.02e-05)]_42 chr19:18475312-18475392 1.07e-01 40_[+5(2.90e-05)]_32 chr15:68316135-68316215 3.08e-02 58_[+1(1.53e-05)]_14 chr6:109745702-109745782 3.07e-05 25_[+5(5.95e-05)]_47 chr5:2156578-2156658 2.35e-02 25_[+3(9.04e-05)]_47 chr10:80937981-80938061 2.87e-01 80 chr5:148533303-148533383 1.53e-01 80 chr1:167130837-167130917 1.58e-02 80 chr3:45147794-45147874 2.23e-01 80 chr2:209794778-209794858 5.75e-04 16_[+1(9.33e-05)]_15_[+1(7.70e-05)]_\ 33 chr5:132307646-132307726 6.41e-03 35_[+5(8.91e-05)]_17_[+2(1.58e-05)]_\ 12 chr7:128429868-128429948 5.48e-06 26_[+5(4.42e-05)]_18_[+2(1.58e-05)]_\ 20 chr2:129201375-129201455 7.59e-01 80 chr1:203748111-203748191 7.07e-06 31_[+5(1.48e-05)]_18_[+2(1.58e-05)]_\ 15 chr11:68035417-68035497 8.04e-02 80 chr6:37808103-37808183 3.39e-01 80 chr10:12486263-12486343 1.96e-05 5_[+3(6.07e-05)]_10_[+1(1.53e-05)]_\ 3_[+4(3.02e-05)]_38 chr5:79555479-79555559 1.95e-07 2_[+5(1.48e-05)]_4_[+3(6.07e-05)]_6_\ [+2(1.58e-05)]_44 chr7:66824974-66825054 2.56e-03 66_[+5(1.48e-05)]_6 chr22:39167987-39168067 2.06e-05 36_[+5(1.48e-05)]_4_[+3(6.07e-05)]_\ 6_[+2(1.58e-05)]_10 chr6:26491980-26492060 3.20e-03 33_[+1(3.11e-05)]_39 chr1:16843651-16843731 2.95e-03 13_[+1(1.53e-05)]_59 chr16:70780437-70780517 3.25e-02 80 chr9:131200121-131200201 1.00e+00 80 chr10:104215025-10421510 6.84e-01 80 chr9:131200321-131200401 1.00e+00 80 chr5:54117971-54118051 4.55e-03 80 chr1:162465760-162465840 3.12e-05 37_[+3(6.07e-05)]_10_[+1(1.53e-05)]_\ 3_[+4(3.02e-05)]_6 chr7:157103733-157103813 2.14e-02 31_[+2(1.58e-05)]_41 chr19:49385498-49385578 8.19e-04 9_[+2(1.58e-05)]_13_[+2(1.58e-05)]_\ 13_[+2(1.58e-05)]_21 chr7:24818293-24818373 5.90e-02 80 chr10:73512881-73512961 4.78e-03 62_[+1(4.59e-05)]_10 chr18:33460976-33461056 2.56e-01 80 chr16:21531934-21532014 9.82e-01 80 chr15:60314155-60314235 1.01e-01 80 chr2:98328873-98328953 1.53e-03 16_[+1(1.53e-05)]_56 chr21:45633732-45633812 7.46e-07 28_[+5(1.48e-05)]_4_[+3(6.07e-05)]_\ 6_[+2(1.58e-05)]_18 chr4:76755737-76755817 6.60e-02 8_[+2(3.22e-05)]_53_[+2(3.22e-05)]_\ 3 chr7:123633152-123633232 2.56e-06 11_[+3(6.07e-05)]_9_[+1(1.53e-05)]_\ 3_[+4(3.02e-05)]_33 chr21:46265422-46265502 4.94e-03 7_[+4(3.02e-05)]_65 chr1:119506858-119506938 9.48e-01 80 chr11:71912719-71912799 1.00e+00 80 chr12:122851263-12285134 2.32e-02 53_[+5(2.90e-05)]_19 chr1:234681714-234681794 8.71e-02 80 chr9:132250154-132250234 7.07e-01 80 chr4:165972109-165972189 3.34e-07 5_[+5(1.48e-05)]_4_[+3(6.07e-05)]_6_\ [+2(1.58e-05)]_41 chr6:155000487-155000567 1.55e-02 80 chr17:75084054-75084134 3.04e-05 7_[+3(6.07e-05)]_10_[+1(1.53e-05)]_\ 3_[+4(3.02e-05)]_36 chr6:43894902-43894982 4.97e-03 80 chr16:65798785-65798865 6.31e-04 51_[+5(1.48e-05)]_4_[+3(6.07e-05)]_\ 9 chr6:36852531-36852611 1.92e-01 27_[+1(3.11e-05)]_45 chr5:1131984-1132064 8.60e-04 48_[+5(8.91e-05)]_4_[+3(6.07e-05)]_\ 12 chr1:149362493-149362573 2.88e-01 80 chr14:93042234-93042314 5.28e-04 19_[+1(4.59e-05)]_4_[+4(3.02e-05)]_\ 41 chr12:121582141-12158222 4.66e-03 44_[+1(4.59e-05)]_28 chr21:31014904-31014984 5.09e-01 80 chr10:70977353-70977433 2.69e-01 80 chr12:108848533-10884861 1.08e-02 80 chr12:125115432-12511551 1.18e-06 31_[+3(6.07e-05)]_6_[+2(1.58e-05)]_\ 27 chr20:30985401-30985481 3.17e-01 80 chr17:48397148-48397228 3.47e-04 30_[+1(1.53e-05)]_3_[+4(3.02e-05)]_\ 31 chr1:203569502-203569582 5.02e-05 29_[+3(6.07e-05)]_10_[+1(3.11e-05)]_\ 3_[+4(3.02e-05)]_14 chr20:48379611-48379691 1.53e-05 17_[+3(6.07e-05)]_10_[+1(1.53e-05)]_\ 3_[+4(3.02e-05)]_26 chr16:26996513-26996593 8.39e-03 80 chr16:16286853-16286933 2.69e-04 [+2(1.58e-05)]_72 chr3:195688398-195688478 1.66e-01 80 chrX:153237651-153237731 4.79e-01 80 chr3:195073746-195073826 3.85e-02 80 chr6:134343876-134343956 4.22e-02 16_[+1(3.11e-05)]_23_[+1(3.11e-05)]_\ 25 chr3:127451812-127451892 1.64e-06 1_[+3(6.07e-05)]_6_[+2(1.58e-05)]_\ 57 chr5:1132188-1132268 3.41e-01 80 chr12:65955723-65955803 2.89e-03 69_[+3(6.07e-05)]_3 chr20:30593995-30594075 9.64e-04 33_[+1(1.53e-05)]_3_[+4(3.02e-05)]_\ 28 chr15:29965596-29965676 1.05e-01 80 chr18:20048401-20048481 1.23e-02 18_[+2(7.79e-05)]_24_[+2(4.75e-05)]_\ 22 chr4:110671980-110672060 2.03e-01 80 chr15:63816862-63816942 1.39e-01 65_[+4(3.02e-05)]_7 chr6:41186903-41186983 1.00e+00 80 chr1:2144320-2144400 7.74e-01 80 chr7:71454954-71455034 1.47e-04 15_[+2(1.58e-05)]_57 chr11:475119-475199 9.97e-01 80 chr2:65028079-65028159 1.45e-03 4_[+2(1.58e-05)]_68 chr6:10750905-10750985 5.01e-03 48_[+1(1.53e-05)]_24 chr4:100656024-100656104 5.18e-05 6_[+3(6.07e-05)]_10_[+1(1.53e-05)]_\ 3_[+4(8.96e-05)]_37 chr1:225654675-225654755 5.75e-04 21_[+1(1.53e-05)]_3_[+4(3.02e-05)]_\ 40 chr7:138043661-138043741 9.71e-02 80 chr11:9341128-9341208 1.15e-02 53_[+1(3.11e-05)]_19 chr9:110438186-110438266 3.06e-03 44_[+3(6.07e-05)]_10_[+1(1.53e-05)]_\ 10 chr3:195414381-195414461 9.84e-01 80 chr1:234680840-234680920 7.05e-01 80 chr9:100812804-100812884 3.97e-02 28_[+2(3.22e-05)]_44 chr1:1545371-1545451 5.81e-02 23_[+1(3.11e-05)]_49 chr10:21368138-21368218 6.14e-02 80 chr3:14293113-14293193 1.15e-02 29_[+1(1.53e-05)]_43 chrX:53401970-53402050 8.66e-01 80 chr3:32090160-32090240 4.61e-08 22_[+5(1.48e-05)]_4_[+3(6.07e-05)]_\ 6_[+2(3.22e-05)]_24 chr6:157955317-157955397 6.60e-02 28_[+1(3.11e-05)]_44 chr8:9408644-9408724 1.37e-01 80 chr3:138129204-138129284 1.70e-04 5_[+3(6.07e-05)]_11_[+1(1.53e-05)]_\ 48 chr4:80132027-80132107 2.68e-02 80 chr3:195414181-195414261 9.96e-01 80 chr14:71320490-71320570 4.29e-08 1_[+5(1.48e-05)]_4_[+3(6.07e-05)]_6_\ [+2(1.58e-05)]_45 chr4:582363-582443 1.09e-02 45_[+2(4.75e-05)]_27 chr21:40731498-40731578 1.84e-07 21_[+5(1.48e-05)]_4_[+3(6.07e-05)]_\ 6_[+2(1.58e-05)]_25 chr1:62432654-62432734 5.52e-01 80 chr2:171201387-171201467 9.96e-03 80 chr20:1182824-1182904 6.08e-07 12_[+3(6.07e-05)]_6_[+2(1.58e-05)]_\ 46 chr22:19930644-19930724 1.14e-01 80 chr9:99994431-99994511 8.60e-02 53_[+2(3.22e-05)]_19 chr20:61895477-61895557 1.51e-01 4_[+2(3.22e-05)]_68 chr16:50491951-50492031 3.13e-06 6_[+1(4.59e-05)]_11_[+5(5.95e-05)]_\ 18_[+2(1.58e-05)]_21 chr1:145090121-145090201 1.14e-06 9_[+5(1.48e-05)]_18_[+2(1.58e-05)]_\ 37 chr6:5542450-5542530 2.33e-05 22_[+3(6.07e-05)]_10_[+1(1.53e-05)]_\ 3_[+4(3.02e-05)]_21 chrX:3488849-3488929 8.91e-08 2_[+5(4.42e-05)]_18_[+2(1.58e-05)]_\ 44 chr1:31611936-31612016 3.73e-05 10_[+3(6.07e-05)]_10_[+1(1.53e-05)]_\ 3_[+4(3.02e-05)]_33 chr2:112337298-112337378 1.90e-02 60_[+2(1.58e-05)]_12 chr15:66893992-66894072 2.42e-02 24_[+2(1.58e-05)]_48 chr13:37436285-37436365 1.40e-05 24_[+3(6.07e-05)]_6_[+2(1.58e-05)]_\ 34 chr16:10419949-10420029 1.73e-01 80 chr5:39150234-39150314 1.85e-04 13_[+1(3.11e-05)]_59 chr16:26981042-26981122 2.76e-07 23_[+5(1.48e-05)]_18_[+2(1.58e-05)]_\ 23 chr1:9835281-9835361 2.65e-05 17_[+3(9.04e-05)]_10_[+1(1.53e-05)]_\ 3_[+4(3.02e-05)]_26 chr8:9408851-9408931 1.81e-02 3_[+4(3.02e-05)]_69 chr2:199079076-199079156 8.70e-01 80 chr1:147144008-147144088 8.46e-08 3_[+5(1.48e-05)]_18_[+2(1.58e-05)]_\ 43 chr9:116142207-116142287 3.71e-02 57_[+1(3.11e-05)]_15 chr3:38125839-38125919 9.72e-01 80 chr1:235003509-235003589 1.76e-01 80 chr1:197908625-197908705 4.18e-01 80 chr17:60712107-60712187 3.25e-05 28_[+3(6.07e-05)]_10_[+1(1.53e-05)]_\ 3_[+4(3.02e-05)]_15 chr7:75431200-75431280 1.55e-04 6_[+2(1.58e-05)]_66 chr8:29995048-29995128 5.05e-01 80 chr17:41430117-41430197 4.40e-02 5_[+1(3.11e-05)]_67 chr16:87903400-87903480 1.43e-01 80 chr15:57075549-57075629 2.00e-03 80 chr16:17176438-17176518 7.49e-04 15_[+1(1.53e-05)]_3_[+4(3.02e-05)]_\ 46 chr6:159133031-159133111 5.77e-04 27_[+3(6.07e-05)]_10_[+1(1.53e-05)]_\ 27 chrX:1511638-1511718 4.64e-02 80 chr18:71856607-71856687 1.33e-05 32_[+3(6.07e-05)]_10_[+1(1.53e-05)]_\ 3_[+4(3.02e-05)]_11 chr15:64086033-64086113 8.57e-04 80 chr10:4909406-4909486 1.53e-01 80 chr3:14314319-14314399 6.64e-01 80 chr2:178116425-178116505 6.10e-01 80 chr1:211884034-211884114 1.09e-07 19_[+5(8.91e-05)]_4_[+3(6.07e-05)]_\ 6_[+2(1.58e-05)]_27 chr16:57143808-57143888 3.42e-02 8_[+4(3.02e-05)]_64 chr6:137692555-137692635 1.29e-01 62_[+2(3.22e-05)]_10 chr11:61717662-61717742 7.88e-01 80 chr1:150681678-150681758 4.71e-02 49_[+2(3.22e-05)]_23 chr21:35338044-35338124 9.97e-01 80 chr1:1071241-1071321 3.71e-03 4_[+4(3.02e-05)]_23_[+3(9.04e-05)]_\ 37 chr15:58242750-58242830 4.84e-02 80 chr1:25005047-25005127 1.01e-06 20_[+5(1.48e-05)]_18_[+2(3.22e-05)]_\ 26 chr12:31887138-31887218 9.20e-03 19_[+1(1.53e-05)]_53 chr7:14040938-14041018 9.65e-01 80 chr2:97078460-97078540 1.10e-06 25_[+5(1.48e-05)]_4_[+3(6.07e-05)]_\ 6_[+2(1.58e-05)]_21 chr3:37865994-37866074 8.38e-02 57_[+3(6.07e-05)]_15 chr5:70694873-70694953 6.37e-08 8_[+5(1.48e-05)]_18_[+2(1.58e-05)]_\ 38 chr20:46768481-46768561 5.54e-04 [+1(1.53e-05)]_3_[+4(3.02e-05)]_61 chr9:117320125-117320205 3.49e-05 18_[+3(6.07e-05)]_11_[+1(1.53e-05)]_\ 35 chr8:94886482-94886562 9.22e-03 80 chr6:158176242-158176322 3.35e-04 47_[+3(6.07e-05)]_11_[+1(1.53e-05)]_\ 6 chr10:104215224-10421530 2.44e-02 12_[+3(6.07e-05)]_60 chr6:134612456-134612536 1.47e-01 33_[+1(3.11e-05)]_39 chr5:95043451-95043531 1.61e-03 15_[+1(1.53e-05)]_57 chr15:90325460-90325540 3.24e-03 60_[+5(1.48e-05)]_4_[+3(6.07e-05)] chr16:50528584-50528664 2.22e-08 16_[+5(1.48e-05)]_4_[+3(6.07e-05)]_\ 6_[+2(1.58e-05)]_30 chr15:90325662-90325742 1.72e-01 80 chr1:31242421-31242501 2.77e-01 80 chr3:45096039-45096119 5.74e-01 80 chr6:37396487-37396567 1.24e-04 71_[+2(3.22e-05)]_1 chr2:26981306-26981386 2.62e-01 80 chr15:68193173-68193253 2.28e-04 25_[+1(1.53e-05)]_3_[+4(3.02e-05)]_\ 36 chr22:21213425-21213505 9.25e-01 80 chr9:129921576-129921656 5.80e-01 80 chrX:15901598-15901678 8.82e-01 80 chr2:46981186-46981266 5.86e-02 68_[+1(4.59e-05)]_4 chr9:123981104-123981184 4.24e-02 29_[+2(3.22e-05)]_22_[+2(3.22e-05)]_\ 13 chr21:34673053-34673133 2.95e-02 66_[+3(6.07e-05)]_6 chr1:185310691-185310771 1.12e-01 29_[+2(3.22e-05)]_43 chr7:2996714-2996794 4.42e-01 80 chr15:45876408-45876488 8.19e-05 3_[+3(6.07e-05)]_9_[+1(1.53e-05)]_\ 52 chr3:195870683-195870763 7.27e-02 80 chr11:86452113-86452193 1.04e-01 80 chr6:147770824-147770904 6.41e-01 80 chr5:90587969-90588049 7.01e-03 10_[+1(1.53e-05)]_62 chr2:55343091-55343171 3.29e-02 36_[+4(3.02e-05)]_36 chr7:73867191-73867271 1.32e-02 29_[+1(1.53e-05)]_43 chr10:75939048-75939128 1.87e-07 5_[+5(5.95e-05)]_18_[+2(1.58e-05)]_\ 7_[+4(8.96e-05)]_26 chr16:83885686-83885766 3.59e-02 4_[+1(9.33e-05)]_68 chr9:139098784-139098864 3.40e-03 80 chr8:129440201-129440281 1.71e-02 80 chr1:228605755-228605835 4.94e-01 80 chr11:76764469-76764549 1.47e-05 23_[+5(1.48e-05)]_18_[+2(3.22e-05)]_\ 23 chr22:31136571-31136651 1.78e-02 20_[+1(1.53e-05)]_52 chr1:231208406-231208486 3.70e-01 80 chr6:20273200-20273280 1.41e-03 17_[+1(1.53e-05)]_3_[+4(3.02e-05)]_\ 44 chr1:62332801-62332881 8.33e-04 51_[+3(6.07e-05)]_9_[+1(1.53e-05)]_\ 4 chr6:91167175-91167255 1.70e-01 9_[+2(7.79e-05)]_63 chr5:96376995-96377075 1.30e-01 80 chr15:41769406-41769486 3.82e-02 30_[+5(2.90e-05)]_42 chr15:35992604-35992684 6.08e-03 55_[+1(1.53e-05)]_17 chr6:14077550-14077630 9.48e-07 13_[+5(1.48e-05)]_18_[+2(1.58e-05)]_\ 33 chr6:144128006-144128086 4.31e-02 54_[+2(6.27e-05)]_18 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n09.farnam.hpc.yale.internal ********************************************************************************