******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/HDAC6.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr22:18506456-18506536 1.0000 80 chr17:38519629-38519709 1.0000 80 chr2:66661290-66661370 1.0000 80 chr1:10854110-10854190 1.0000 80 chr10:71336310-71336390 1.0000 80 chr13:28394775-28394855 1.0000 80 chr3:130236079-130236159 1.0000 80 chr7:155604823-155604903 1.0000 80 chr10:72238590-72238670 1.0000 80 chr7:157519588-157519668 1.0000 80 chr6:7726866-7726946 1.0000 80 chr13:28397232-28397312 1.0000 80 chr9:115653066-115653146 1.0000 80 chr1:10854648-10854728 1.0000 80 chr1:31712076-31712156 1.0000 80 chr1:29138949-29139029 1.0000 80 chr6:12290586-12290666 1.0000 80 chr19:1754677-1754757 1.0000 80 chr10:35931402-35931482 1.0000 80 chr17:61554601-61554681 1.0000 80 chr1:9712230-9712310 1.0000 80 chr22:19475943-19476023 1.0000 80 chr22:22702441-22702521 1.0000 80 chr8:144843166-144843246 1.0000 80 chr7:127260288-127260368 1.0000 80 chr22:21133124-21133204 1.0000 80 chr3:130064679-130064759 1.0000 80 chr1:165324667-165324747 1.0000 80 chr22:21998150-21998230 1.0000 80 chr12:117318885-11731896 1.0000 80 chr22:21353021-21353101 1.0000 80 chr7:108096686-108096766 1.0000 80 chr10:72977256-72977336 1.0000 80 chr22:23439922-23440002 1.0000 80 chr22:21350573-21350653 1.0000 80 chr22:20056307-20056387 1.0000 80 chr6:143248255-143248335 1.0000 80 chr18:2847699-2847779 1.0000 80 chr4:185938680-185938760 1.0000 80 chr22:19094823-19094903 1.0000 80 chr1:110693714-110693794 1.0000 80 chr1:2767237-2767317 1.0000 80 chr11:113931339-11393141 1.0000 80 chr22:22258843-22258923 1.0000 80 chr6:144606611-144606691 1.0000 80 chr1:17298061-17298141 1.0000 80 chr22:22035622-22035702 1.0000 80 chr19:8429384-8429464 1.0000 80 chr9:126773872-126773952 1.0000 80 chr9:139964335-139964415 1.0000 80 chrX:11683426-11683506 1.0000 80 chr7:150026502-150026582 1.0000 80 chr22:19493882-19493962 1.0000 80 chr22:19428127-19428207 1.0000 80 chr7:155598253-155598333 1.0000 80 chr7:156802881-156802961 1.0000 80 chr22:19834735-19834815 1.0000 80 chr22:22012506-22012586 1.0000 80 chr6:150464841-150464921 1.0000 80 chr10:77168004-77168084 1.0000 80 chr22:22285099-22285179 1.0000 80 chr12:104851095-10485117 1.0000 80 chr8:128750411-128750491 1.0000 80 chr10:44185924-44186004 1.0000 80 chr19:56181789-56181869 1.0000 80 chr8:30769294-30769374 1.0000 80 chr12:49582525-49582605 1.0000 80 chr2:242808140-242808220 1.0000 80 chr22:21331307-21331387 1.0000 80 chr2:73520899-73520979 1.0000 80 chr22:22749732-22749812 1.0000 80 chr22:23413234-23413314 1.0000 80 chr13:91197608-91197688 1.0000 80 chr9:139085356-139085436 1.0000 80 chr22:19748263-19748343 1.0000 80 chr1:38259744-38259824 1.0000 80 chr15:78111674-78111754 1.0000 80 chr22:19240819-19240899 1.0000 80 chr7:111845869-111845949 1.0000 80 chr1:6484948-6485028 1.0000 80 chr22:19105462-19105542 1.0000 80 chr6:13487234-13487314 1.0000 80 chr22:20940824-20940904 1.0000 80 chr22:21105427-21105507 1.0000 80 chr1:208416656-208416736 1.0000 80 chr22:21236843-21236923 1.0000 80 chr22:20874720-20874800 1.0000 80 chr22:21135717-21135797 1.0000 80 chr17:72348014-72348094 1.0000 80 chr1:226411721-226411801 1.0000 80 chr22:19192292-19192372 1.0000 80 chr6:170123147-170123227 1.0000 80 chr5:10564788-10564868 1.0000 80 chr1:245318090-245318170 1.0000 80 chr1:231762380-231762460 1.0000 80 chr2:20424552-20424632 1.0000 80 chr7:158621845-158621925 1.0000 80 chr1:166134566-166134646 1.0000 80 chr8:134582804-134582884 1.0000 80 chr20:3229510-3229590 1.0000 80 chr17:76355022-76355102 1.0000 80 chr22:42310110-42310190 1.0000 80 chr19:18900792-18900872 1.0000 80 chr22:19533434-19533514 1.0000 80 chr2:71681053-71681133 1.0000 80 chr19:8675361-8675441 1.0000 80 chr1:23504317-23504397 1.0000 80 chr22:21809942-21810022 1.0000 80 chr22:23442846-23442926 1.0000 80 chr2:54683990-54684070 1.0000 80 chr22:23430916-23430996 1.0000 80 chr7:16793628-16793708 1.0000 80 chr22:19164380-19164460 1.0000 80 chr22:21803059-21803139 1.0000 80 chr19:1065061-1065141 1.0000 80 chr20:62463124-62463204 1.0000 80 chr6:91320860-91320940 1.0000 80 chr22:23273104-23273184 1.0000 80 chr7:129791624-129791704 1.0000 80 chr4:113436209-113436289 1.0000 80 chr22:19334393-19334473 1.0000 80 chr22:19085759-19085839 1.0000 80 chr22:20905386-20905466 1.0000 80 chr8:94712575-94712655 1.0000 80 chr16:3458779-3458859 1.0000 80 chr22:19143868-19143948 1.0000 80 chr7:50343843-50343923 1.0000 80 chr22:23457448-23457528 1.0000 80 chr11:43964746-43964826 1.0000 80 chr16:10276683-10276763 1.0000 80 chr1:6067558-6067638 1.0000 80 chr17:1927673-1927753 1.0000 80 chr22:20222344-20222424 1.0000 80 chr13:100633673-10063375 1.0000 80 chr22:20125974-20126054 1.0000 80 chr7:23507568-23507648 1.0000 80 chr19:55953520-55953600 1.0000 80 chr21:43933670-43933750 1.0000 80 chr6:150184509-150184589 1.0000 80 chr11:2291329-2291409 1.0000 80 chr22:23448558-23448638 1.0000 80 chr1:180200875-180200955 1.0000 80 chr22:20970139-20970219 1.0000 80 chr10:72432506-72432586 1.0000 80 chr19:7566082-7566162 1.0000 80 chr3:194048087-194048167 1.0000 80 chr16:77468550-77468630 1.0000 80 chr22:23251433-23251513 1.0000 80 chr7:142552515-142552595 1.0000 80 chr1:15480230-15480310 1.0000 80 chr2:69240855-69240935 1.0000 80 chr22:23274941-23275021 1.0000 80 chr22:23261384-23261464 1.0000 80 chr22:21150126-21150206 1.0000 80 chr22:22726533-22726613 1.0000 80 chr16:71168324-71168404 1.0000 80 chr22:20287440-20287520 1.0000 80 chr1:1535029-1535109 1.0000 80 chr9:91849677-91849757 1.0000 80 chr22:20843510-20843590 1.0000 80 chr15:68115684-68115764 1.0000 80 chr20:60719473-60719553 1.0000 80 chr17:27895876-27895956 1.0000 80 chr6:28294277-28294357 1.0000 80 chr19:14184206-14184286 1.0000 80 chr1:180198717-180198797 1.0000 80 chr4:153857765-153857845 1.0000 80 chr22:21102830-21102910 1.0000 80 chr22:19023481-19023561 1.0000 80 chr22:20099282-20099362 1.0000 80 chr3:33701136-33701216 1.0000 80 chr11:64529904-64529984 1.0000 80 chr22:23450831-23450911 1.0000 80 chr6:109330788-109330868 1.0000 80 chr9:123617155-123617235 1.0000 80 chr22:21352245-21352325 1.0000 80 chr22:19163867-19163947 1.0000 80 chr6:170123564-170123644 1.0000 80 chr22:23092011-23092091 1.0000 80 chr7:150037346-150037426 1.0000 80 chr17:45331513-45331593 1.0000 80 chr22:23445108-23445188 1.0000 80 chr19:46271510-46271590 1.0000 80 chr22:19760871-19760951 1.0000 80 chr19:10531634-10531714 1.0000 80 chr22:20095934-20096014 1.0000 80 chr5:102594993-102595073 1.0000 80 chr22:21382717-21382797 1.0000 80 chr9:101469696-101469776 1.0000 80 chr7:129252221-129252301 1.0000 80 chr1:205425777-205425857 1.0000 80 chr22:23455236-23455316 1.0000 80 chr22:20126668-20126748 1.0000 80 chr22:21344646-21344726 1.0000 80 chr1:118149071-118149151 1.0000 80 chr19:18552885-18552965 1.0000 80 chr21:35015613-35015693 1.0000 80 chr10:31608577-31608657 1.0000 80 chr19:17007117-17007197 1.0000 80 chr5:95067434-95067514 1.0000 80 chr22:20123715-20123795 1.0000 80 chr8:143808786-143808866 1.0000 80 chr1:6531131-6531211 1.0000 80 chr1:169075957-169076037 1.0000 80 chr1:44496323-44496403 1.0000 80 chr13:91637045-91637125 1.0000 80 chr1:201618277-201618357 1.0000 80 chr22:19764013-19764093 1.0000 80 chr22:19832744-19832824 1.0000 80 chr16:3433090-3433170 1.0000 80 chr7:143042660-143042740 1.0000 80 chr8:22925504-22925584 1.0000 80 chr6:143999324-143999404 1.0000 80 chr22:19191416-19191496 1.0000 80 chr22:19996169-19996249 1.0000 80 chr11:44331631-44331711 1.0000 80 chr7:149487436-149487516 1.0000 80 chr22:19924162-19924242 1.0000 80 chr19:36193291-36193371 1.0000 80 chr22:19389179-19389259 1.0000 80 chr22:20071836-20071916 1.0000 80 chr22:19796346-19796426 1.0000 80 chr22:22055486-22055566 1.0000 80 chr12:113591117-11359119 1.0000 80 chr12:95466730-95466810 1.0000 80 chr22:22303404-22303484 1.0000 80 chr3:194047374-194047454 1.0000 80 chr22:19128925-19129005 1.0000 80 chr1:234916400-234916480 1.0000 80 chr2:111879104-111879184 1.0000 80 chr5:73936390-73936470 1.0000 80 chr13:81341802-81341882 1.0000 80 chr22:20977094-20977174 1.0000 80 chr22:23452822-23452902 1.0000 80 chr22:21238195-21238275 1.0000 80 chr17:15165781-15165861 1.0000 80 chr22:21118388-21118468 1.0000 80 chr22:19736814-19736894 1.0000 80 chr7:135484460-135484540 1.0000 80 chr1:145443047-145443127 1.0000 80 chr22:19605278-19605358 1.0000 80 chr22:20098705-20098785 1.0000 80 chr3:12526218-12526298 1.0000 80 chr10:71337783-71337863 1.0000 80 chr7:130353105-130353185 1.0000 80 chr17:2628143-2628223 1.0000 80 chr19:2933593-2933673 1.0000 80 chr22:21381946-21382026 1.0000 80 chr20:62670004-62670084 1.0000 80 chr22:22005984-22006064 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_HDAC6/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/HDAC6.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.172 C 0.333 G 0.327 T 0.168 Background letter frequencies (from file dataset with add-one prior applied): A 0.172 C 0.333 G 0.327 T 0.168 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CTGGAAAG MEME-1 width = 8 sites = 22 llr = 196 E-value = 3.8e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGGAAAG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :31:997: pos.-specific C a::::::: probability G ::9a:13a matrix T :7::1::: bits 2.6 2.3 2.1 ** 1.8 ** Relative 1.5 * **** Entropy 1.3 ******** (12.8 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CTGGAAAG consensus A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGAAAG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:111879104-111879184 30 9.95e-06 GTGCGCCCAG CTGGAAAG TCTCGCCGCC chr22:19760871-19760951 58 9.95e-06 GTGGTGGGTG CTGGAAAG AAACAGCCTA chr22:20125974-20126054 70 9.95e-06 GCCTGGAGTC CTGGAAAG CTT chr20:3229510-3229590 54 9.95e-06 GCCCATCAGG CTGGAAAG GCGTGGTTCC chr1:231762380-231762460 64 9.95e-06 GGGGCCAATG CTGGAAAG GAAACAGCG chr22:21236843-21236923 46 9.95e-06 ACAGTTCATT CTGGAAAG GCAAGTGGAG chr1:180198717-180198797 13 2.01e-05 GAAGTGCCGG CAGGAAAG GAATTGGCCA chr22:19533434-19533514 31 2.01e-05 CAGGTCCTGC CAGGAAAG AAACCAAGCA chr5:73936390-73936470 63 4.43e-05 GGGGAGGGAG CTAGAAAG CGCCTTGTGT chr19:17007117-17007197 21 4.43e-05 AGCCGCTGCT CTGGAAGG AAGGGGGCCT chr22:20099282-20099362 64 4.43e-05 TGGGCTGTGC CTGGAAGG CGAGCCTTG chr17:27895876-27895956 39 4.43e-05 AAAGTTCGTC CTGGAAGG AGTGGCGCGC chr13:91197608-91197688 48 4.43e-05 cttttgggca ctggaagg agcaaactcc chr16:3433090-3433170 38 5.40e-05 AGACAATGCA CTGGTAAG GCTTTTCCCC chr22:23445108-23445188 61 5.40e-05 TGCCCTAGTG CTGGTAAG CCTTGAGGGA chr22:19796346-19796426 68 8.90e-05 TTGCTGTTTT CAGGAAGG GTCTG chr8:22925504-22925584 31 8.90e-05 CAAGAGGTGG CAAGAAAG GCTCTTCCCA chr22:19334393-19334473 51 8.90e-05 GAATAATCAG CAGGAAGG AGGGGAGAAG chr16:3458779-3458859 46 1.08e-04 AGGATCCACA CTGGAGAG AAGCCATACC chr7:127260288-127260368 47 1.08e-04 GTGCGTAAAG CTGGAGAG GACTGGGCGC chr22:23261384-23261464 2 1.23e-04 C AAGGAAAG ACGAGGGCCC chr22:19389179-19389259 61 1.28e-04 ttcaatgcac caggaaat ccgcctctga -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGAAAG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:111879104-111879184 1e-05 29_[+1]_43 chr22:19760871-19760951 1e-05 57_[+1]_15 chr22:20125974-20126054 1e-05 69_[+1]_3 chr20:3229510-3229590 1e-05 53_[+1]_19 chr1:231762380-231762460 1e-05 63_[+1]_9 chr22:21236843-21236923 1e-05 45_[+1]_27 chr1:180198717-180198797 2e-05 12_[+1]_60 chr22:19533434-19533514 2e-05 30_[+1]_42 chr5:73936390-73936470 4.4e-05 62_[+1]_10 chr19:17007117-17007197 4.4e-05 20_[+1]_52 chr22:20099282-20099362 4.4e-05 63_[+1]_9 chr17:27895876-27895956 4.4e-05 38_[+1]_34 chr13:91197608-91197688 4.4e-05 47_[+1]_25 chr16:3433090-3433170 5.4e-05 37_[+1]_35 chr22:23445108-23445188 5.4e-05 60_[+1]_12 chr22:19796346-19796426 8.9e-05 67_[+1]_5 chr8:22925504-22925584 8.9e-05 30_[+1]_42 chr22:19334393-19334473 8.9e-05 50_[+1]_22 chr16:3458779-3458859 0.00011 45_[+1]_27 chr7:127260288-127260368 0.00011 46_[+1]_26 chr22:23261384-23261464 0.00012 1_[+1]_71 chr22:19389179-19389259 0.00013 60_[+1]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGAAAG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGGAAAG width=8 seqs=22 chr2:111879104-111879184 ( 30) CTGGAAAG 1 chr22:19760871-19760951 ( 58) CTGGAAAG 1 chr22:20125974-20126054 ( 70) CTGGAAAG 1 chr20:3229510-3229590 ( 54) CTGGAAAG 1 chr1:231762380-231762460 ( 64) CTGGAAAG 1 chr22:21236843-21236923 ( 46) CTGGAAAG 1 chr1:180198717-180198797 ( 13) CAGGAAAG 1 chr22:19533434-19533514 ( 31) CAGGAAAG 1 chr5:73936390-73936470 ( 63) CTAGAAAG 1 chr19:17007117-17007197 ( 21) CTGGAAGG 1 chr22:20099282-20099362 ( 64) CTGGAAGG 1 chr17:27895876-27895956 ( 39) CTGGAAGG 1 chr13:91197608-91197688 ( 48) CTGGAAGG 1 chr16:3433090-3433170 ( 38) CTGGTAAG 1 chr22:23445108-23445188 ( 61) CTGGTAAG 1 chr22:19796346-19796426 ( 68) CAGGAAGG 1 chr8:22925504-22925584 ( 31) CAAGAAAG 1 chr22:19334393-19334473 ( 51) CAGGAAGG 1 chr16:3458779-3458859 ( 46) CTGGAGAG 1 chr7:127260288-127260368 ( 47) CTGGAGAG 1 chr22:23261384-23261464 ( 2) AAGGAAAG 1 chr22:19389179-19389259 ( 61) CAGGAAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGAAAG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.7218 E= 3.8e+001 -192 152 -1110 -1110 89 -1110 -1110 202 -92 -1110 148 -1110 -1110 -1110 161 -1110 240 -1110 -1110 -88 240 -1110 -184 -1110 208 -1110 -26 -1110 -1110 -1110 155 -188 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGAAAG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 3.8e+001 0.045455 0.954545 0.000000 0.000000 0.318182 0.000000 0.000000 0.681818 0.090909 0.000000 0.909091 0.000000 0.000000 0.000000 1.000000 0.000000 0.909091 0.000000 0.000000 0.090909 0.909091 0.000000 0.090909 0.000000 0.727273 0.000000 0.272727 0.000000 0.000000 0.000000 0.954545 0.045455 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGGAAAG MEME-1 regular expression -------------------------------------------------------------------------------- C[TA]GGAA[AG]G -------------------------------------------------------------------------------- Time 5.05 secs. ******************************************************************************** ******************************************************************************** MOTIF YCCTGCAG MEME-2 width = 8 sites = 16 llr = 151 E-value = 4.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif YCCTGCAG MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::::a: pos.-specific C 57a::a:: probability G ::::a::a matrix T 53:a:::: bits 2.6 * * 2.3 * * 2.1 * * 1.8 * * Relative 1.5 ****** Entropy 1.3 ****** (13.6 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CCCTGCAG consensus TT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCCTGCAG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:143042660-143042740 2 1.92e-05 C TCCTGCAG CGCCACCTGT chr1:118149071-118149151 21 1.92e-05 GCTCCGCGCG TCCTGCAG GCTGCGCGCT chr7:142552515-142552595 63 1.92e-05 CCTTCCCACT TCCTGCAG GCGCCCCACG chr22:23430916-23430996 10 1.92e-05 GCTAGAGAG TCCTGCAG GTTCAGGGTG chr1:23504317-23504397 28 1.92e-05 CCAGCCGGCT TCCTGCAG CCGAGGGCCG chr17:76355022-76355102 27 1.92e-05 GAAGCCGCTC TCCTGCAG CTTGCGCACT chr6:12290586-12290666 51 1.92e-05 GTCCTGCGCC TCCTGCAG TCCCAGCTCT chr6:170123564-170123644 34 2.88e-05 GAACGCGCGC TTCTGCAG GCCCCTCCGA chr22:21344646-21344726 21 6.68e-05 TGTCCTCTCC CCCTGCAG GTGGCCCAGA chr2:54683990-54684070 18 6.68e-05 GCCGGCGCCT CCCTGCAG CCGGGCGCGG chr13:91197608-91197688 73 6.68e-05 tccgtgcagg ccctgcag chr22:18506456-18506536 9 6.68e-05 GCAGCGCG CCCTGCAG CCTGGGAGCG chr16:71168324-71168404 33 8.60e-05 CCTGATTCAG CTCTGCAG GCCTTGCTGG chr8:94712575-94712655 39 8.60e-05 GCGCAGGCGG CTCTGCAG GGGTGGGCGC chr22:23442846-23442926 49 8.60e-05 acagtgggtg ctctgcag actttgtgga chr6:170123147-170123227 71 8.60e-05 GGCTGGCTGG CTCTGCAG CA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCCTGCAG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:143042660-143042740 1.9e-05 1_[+2]_71 chr1:118149071-118149151 1.9e-05 20_[+2]_52 chr7:142552515-142552595 1.9e-05 62_[+2]_10 chr22:23430916-23430996 1.9e-05 9_[+2]_63 chr1:23504317-23504397 1.9e-05 27_[+2]_45 chr17:76355022-76355102 1.9e-05 26_[+2]_46 chr6:12290586-12290666 1.9e-05 50_[+2]_22 chr6:170123564-170123644 2.9e-05 33_[+2]_39 chr22:21344646-21344726 6.7e-05 20_[+2]_52 chr2:54683990-54684070 6.7e-05 17_[+2]_55 chr13:91197608-91197688 6.7e-05 72_[+2] chr22:18506456-18506536 6.7e-05 8_[+2]_64 chr16:71168324-71168404 8.6e-05 32_[+2]_40 chr8:94712575-94712655 8.6e-05 38_[+2]_34 chr22:23442846-23442926 8.6e-05 48_[+2]_24 chr6:170123147-170123227 8.6e-05 70_[+2]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCCTGCAG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YCCTGCAG width=8 seqs=16 chr7:143042660-143042740 ( 2) TCCTGCAG 1 chr1:118149071-118149151 ( 21) TCCTGCAG 1 chr7:142552515-142552595 ( 63) TCCTGCAG 1 chr22:23430916-23430996 ( 10) TCCTGCAG 1 chr1:23504317-23504397 ( 28) TCCTGCAG 1 chr17:76355022-76355102 ( 27) TCCTGCAG 1 chr6:12290586-12290666 ( 51) TCCTGCAG 1 chr6:170123564-170123644 ( 34) TTCTGCAG 1 chr22:21344646-21344726 ( 21) CCCTGCAG 1 chr2:54683990-54684070 ( 18) CCCTGCAG 1 chr13:91197608-91197688 ( 73) CCCTGCAG 1 chr22:18506456-18506536 ( 9) CCCTGCAG 1 chr16:71168324-71168404 ( 33) CTCTGCAG 1 chr8:94712575-94712655 ( 39) CTCTGCAG 1 chr22:23442846-23442926 ( 49) CTCTGCAG 1 chr6:170123147-170123227 ( 71) CTCTGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCCTGCAG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.30533 E= 4.3e+003 -1064 59 -1064 157 -1064 104 -1064 90 -1064 159 -1064 -1064 -1064 -1064 -1064 257 -1064 -1064 161 -1064 -1064 159 -1064 -1064 254 -1064 -1064 -1064 -1064 -1064 161 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCCTGCAG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 4.3e+003 0.000000 0.500000 0.000000 0.500000 0.000000 0.687500 0.000000 0.312500 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCCTGCAG MEME-2 regular expression -------------------------------------------------------------------------------- [CT][CT]CTGCAG -------------------------------------------------------------------------------- Time 8.83 secs. ******************************************************************************** ******************************************************************************** MOTIF AGTTAATT MEME-3 width = 8 sites = 2 llr = 27 E-value = 5.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGTTAATT MEME-3 Description -------------------------------------------------------------------------------- Simplified A a:::aa:: pos.-specific C :::::::: probability G :a:::::: matrix T ::aa::aa bits 2.6 * ****** 2.3 * ****** 2.1 * ****** 1.8 * ****** Relative 1.5 ******** Entropy 1.3 ******** (19.5 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel AGTTAATT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTTAATT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:145443047-145443127 73 1.33e-06 aactacgttc agttaatt chr10:71336310-71336390 17 1.33e-06 CCCTCTCCAA AGTTAATT CCTGTGCCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTTAATT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:145443047-145443127 1.3e-06 72_[+3] chr10:71336310-71336390 1.3e-06 16_[+3]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTTAATT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGTTAATT width=8 seqs=2 chr1:145443047-145443127 ( 73) AGTTAATT 1 chr10:71336310-71336390 ( 17) AGTTAATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTTAATT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 5.1e+003 253 -765 -765 -765 -765 -765 161 -765 -765 -765 -765 257 -765 -765 -765 257 253 -765 -765 -765 253 -765 -765 -765 -765 -765 -765 257 -765 -765 -765 257 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTTAATT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 5.1e+003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTTAATT MEME-3 regular expression -------------------------------------------------------------------------------- AGTTAATT -------------------------------------------------------------------------------- Time 12.57 secs. ******************************************************************************** ******************************************************************************** MOTIF CTYTTCYY MEME-4 width = 8 sites = 15 llr = 144 E-value = 1.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTYTTCYY MEME-4 Description -------------------------------------------------------------------------------- Simplified A :1:::::: pos.-specific C a:4::a65 probability G :::::::: matrix T :96aa:45 bits 2.6 ** 2.3 * ** 2.1 * ** 1.8 * ** Relative 1.5 ** *** Entropy 1.3 ****** (13.8 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CTTTTCCC consensus C TT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTYTTCYY MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr22:21118388-21118468 11 2.49e-06 gtaatttgac cttttctt gacaacagga chr22:19085759-19085839 63 2.49e-06 CTTCTCTGTT CTTTTCTT CACACCCTGA chr22:19105462-19105542 53 7.43e-06 ACCTCGGTCA CTTTTCCT TGTGATGAAA chr7:150037346-150037426 64 1.24e-05 GGACAGTGGC CTTTTCTC CAAAGGGCT chr6:150464841-150464921 70 1.24e-05 GAGCACAGTG CTTTTCTC CGA chr16:3433090-3433170 47 2.22e-05 ACTGGTAAGG CTTTTCCC CGGTATGGGT chr13:91637045-91637125 59 2.22e-05 TCCCCCTTAG CTTTTCCC TATGGTAGTT chr10:31608577-31608657 24 2.22e-05 TCTTTCCGCA CTTTTCCC CACTCTTGTG chr15:68115684-68115764 50 2.71e-05 AGGCTTCGGC CTCTTCTT CCGGCCAGTC chr22:23273104-23273184 68 3.69e-05 TGGTGACTCT CTCTTCCT ATAGC chr6:143248255-143248335 15 3.69e-05 GGAAGAGCTG CTCTTCCT CCCGGAGGAA chr10:71337783-71337863 46 4.67e-05 GAAGCGGCTC CTCTTCTC AGCGCCCCTC chr8:22925504-22925584 40 6.61e-05 GCAAGAAAGG CTCTTCCC AGGCCAAAAT chr7:142552515-142552595 47 6.61e-05 TACAGACAGC CTCTTCCC TTCCCACTTC chr6:91320860-91320940 13 7.37e-05 ggcggggAGC CATTTCCT CCCCAAGCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTYTTCYY MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:21118388-21118468 2.5e-06 10_[+4]_62 chr22:19085759-19085839 2.5e-06 62_[+4]_10 chr22:19105462-19105542 7.4e-06 52_[+4]_20 chr7:150037346-150037426 1.2e-05 63_[+4]_9 chr6:150464841-150464921 1.2e-05 69_[+4]_3 chr16:3433090-3433170 2.2e-05 46_[+4]_26 chr13:91637045-91637125 2.2e-05 58_[+4]_14 chr10:31608577-31608657 2.2e-05 23_[+4]_49 chr15:68115684-68115764 2.7e-05 49_[+4]_23 chr22:23273104-23273184 3.7e-05 67_[+4]_5 chr6:143248255-143248335 3.7e-05 14_[+4]_58 chr10:71337783-71337863 4.7e-05 45_[+4]_27 chr8:22925504-22925584 6.6e-05 39_[+4]_33 chr7:142552515-142552595 6.6e-05 46_[+4]_26 chr6:91320860-91320940 7.4e-05 12_[+4]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTYTTCYY MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTYTTCYY width=8 seqs=15 chr22:21118388-21118468 ( 11) CTTTTCTT 1 chr22:19085759-19085839 ( 63) CTTTTCTT 1 chr22:19105462-19105542 ( 53) CTTTTCCT 1 chr7:150037346-150037426 ( 64) CTTTTCTC 1 chr6:150464841-150464921 ( 70) CTTTTCTC 1 chr16:3433090-3433170 ( 47) CTTTTCCC 1 chr13:91637045-91637125 ( 59) CTTTTCCC 1 chr10:31608577-31608657 ( 24) CTTTTCCC 1 chr15:68115684-68115764 ( 50) CTCTTCTT 1 chr22:23273104-23273184 ( 68) CTCTTCCT 1 chr6:143248255-143248335 ( 15) CTCTTCCT 1 chr10:71337783-71337863 ( 46) CTCTTCTC 1 chr8:22925504-22925584 ( 40) CTCTTCCC 1 chr7:142552515-142552595 ( 47) CTCTTCCC 1 chr6:91320860-91320940 ( 13) CATTTCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTYTTCYY MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.5229 E= 1.5e+003 -1055 158 -1055 -1055 -137 -1055 -1055 247 -1055 26 -1055 184 -1055 -1055 -1055 257 -1055 -1055 -1055 257 -1055 158 -1055 -1055 -1055 85 -1055 125 -1055 68 -1055 147 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTYTTCYY MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 1.5e+003 0.000000 1.000000 0.000000 0.000000 0.066667 0.000000 0.000000 0.933333 0.000000 0.400000 0.000000 0.600000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.600000 0.000000 0.400000 0.000000 0.533333 0.000000 0.466667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTYTTCYY MEME-4 regular expression -------------------------------------------------------------------------------- CT[TC]TTC[CT][CT] -------------------------------------------------------------------------------- Time 16.31 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAGGTTT MEME-5 width = 8 sites = 4 llr = 49 E-value = 3.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAGGTTT MEME-5 Description -------------------------------------------------------------------------------- Simplified A aaa::::3 pos.-specific C :::::::: probability G :::aa::: matrix T :::::aa8 bits 2.6 *** ** 2.3 *** ** 2.1 *** ** 1.8 *** *** Relative 1.5 ******** Entropy 1.3 ******** (17.7 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel AAAGGTTT consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGGTTT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr22:22055486-22055566 39 2.58e-06 AAGAAGAGAC AAAGGTTT CAGGACAGAA chr22:19163867-19163947 22 2.58e-06 GTAGGCCGGG AAAGGTTT GAGGTGGGGA chr22:23251433-23251513 7 2.58e-06 ggccag aaaggttt aacaaggctc chr22:21238195-21238275 27 5.22e-06 AGAACAGTGG AAAGGTTA CCTGAGCCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGGTTT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:22055486-22055566 2.6e-06 38_[+5]_34 chr22:19163867-19163947 2.6e-06 21_[+5]_51 chr22:23251433-23251513 2.6e-06 6_[+5]_66 chr22:21238195-21238275 5.2e-06 26_[+5]_46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGGTTT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAGGTTT width=8 seqs=4 chr22:22055486-22055566 ( 39) AAAGGTTT 1 chr22:19163867-19163947 ( 22) AAAGGTTT 1 chr22:23251433-23251513 ( 7) AAAGGTTT 1 chr22:21238195-21238275 ( 27) AAAGGTTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGGTTT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.1553 E= 3.1e+003 253 -865 -865 -865 253 -865 -865 -865 253 -865 -865 -865 -865 -865 161 -865 -865 -865 161 -865 -865 -865 -865 257 -865 -865 -865 257 54 -865 -865 216 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGGTTT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 3.1e+003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.250000 0.000000 0.000000 0.750000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGGTTT MEME-5 regular expression -------------------------------------------------------------------------------- AAAGGTT[TA] -------------------------------------------------------------------------------- Time 19.99 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:18506456-18506536 1.10e-01 8_[+2(6.68e-05)]_64 chr17:38519629-38519709 7.59e-01 80 chr2:66661290-66661370 7.94e-01 80 chr1:10854110-10854190 8.76e-01 80 chr10:71336310-71336390 1.21e-03 16_[+3(1.33e-06)]_56 chr13:28394775-28394855 3.95e-01 80 chr3:130236079-130236159 9.01e-01 80 chr7:155604823-155604903 8.44e-01 80 chr10:72238590-72238670 8.61e-01 80 chr7:157519588-157519668 4.44e-01 80 chr6:7726866-7726946 7.50e-01 80 chr13:28397232-28397312 8.29e-02 80 chr9:115653066-115653146 1.00e+00 80 chr1:10854648-10854728 7.51e-01 80 chr1:31712076-31712156 9.92e-01 80 chr1:29138949-29139029 1.00e+00 80 chr6:12290586-12290666 4.54e-02 50_[+2(1.92e-05)]_22 chr19:1754677-1754757 4.58e-01 80 chr10:35931402-35931482 9.12e-01 80 chr17:61554601-61554681 7.55e-01 80 chr1:9712230-9712310 6.01e-01 80 chr22:19475943-19476023 2.76e-02 80 chr22:22702441-22702521 2.38e-01 80 chr8:144843166-144843246 2.82e-01 80 chr7:127260288-127260368 6.55e-02 80 chr22:21133124-21133204 2.07e-01 80 chr3:130064679-130064759 5.50e-01 80 chr1:165324667-165324747 3.64e-01 80 chr22:21998150-21998230 3.32e-01 80 chr12:117318885-11731896 9.68e-01 80 chr22:21353021-21353101 1.33e-01 80 chr7:108096686-108096766 9.01e-01 80 chr10:72977256-72977336 7.14e-01 80 chr22:23439922-23440002 6.13e-01 80 chr22:21350573-21350653 1.07e-01 80 chr22:20056307-20056387 2.43e-01 80 chr6:143248255-143248335 7.08e-02 14_[+4(3.69e-05)]_58 chr18:2847699-2847779 5.45e-01 80 chr4:185938680-185938760 3.75e-02 80 chr22:19094823-19094903 4.68e-01 80 chr1:110693714-110693794 8.64e-01 80 chr1:2767237-2767317 2.49e-01 80 chr11:113931339-11393141 2.40e-01 80 chr22:22258843-22258923 2.57e-02 59_[+4(8.88e-05)]_13 chr6:144606611-144606691 1.10e-01 80 chr1:17298061-17298141 5.06e-01 80 chr22:22035622-22035702 9.65e-01 80 chr19:8429384-8429464 6.67e-01 80 chr9:126773872-126773952 2.72e-01 80 chr9:139964335-139964415 8.67e-01 80 chrX:11683426-11683506 7.21e-01 80 chr7:150026502-150026582 3.33e-01 80 chr22:19493882-19493962 6.63e-01 80 chr22:19428127-19428207 9.17e-01 80 chr7:155598253-155598333 6.56e-02 80 chr7:156802881-156802961 9.97e-01 80 chr22:19834735-19834815 1.84e-01 80 chr22:22012506-22012586 6.21e-02 80 chr6:150464841-150464921 3.13e-02 69_[+4(1.24e-05)]_3 chr10:77168004-77168084 9.08e-01 80 chr22:22285099-22285179 2.64e-01 80 chr12:104851095-10485117 7.74e-01 80 chr8:128750411-128750491 2.27e-01 80 chr10:44185924-44186004 2.70e-01 80 chr19:56181789-56181869 9.07e-01 80 chr8:30769294-30769374 8.44e-02 80 chr12:49582525-49582605 3.78e-01 80 chr2:242808140-242808220 9.87e-01 80 chr22:21331307-21331387 1.96e-01 80 chr2:73520899-73520979 9.96e-01 80 chr22:22749732-22749812 4.89e-01 80 chr22:23413234-23413314 1.38e-01 80 chr13:91197608-91197688 4.66e-05 47_[+1(4.43e-05)]_17_[+2(6.68e-05)] chr9:139085356-139085436 8.14e-01 80 chr22:19748263-19748343 9.94e-01 80 chr1:38259744-38259824 3.74e-01 80 chr15:78111674-78111754 7.20e-01 80 chr22:19240819-19240899 4.40e-02 45_[+4(8.88e-05)]_27 chr7:111845869-111845949 5.67e-01 80 chr1:6484948-6485028 7.43e-01 80 chr22:19105462-19105542 4.39e-04 52_[+4(7.43e-06)]_20 chr6:13487234-13487314 8.75e-01 80 chr22:20940824-20940904 1.63e-01 80 chr22:21105427-21105507 3.03e-01 80 chr1:208416656-208416736 8.85e-01 80 chr22:21236843-21236923 2.24e-04 37_[+3(4.95e-05)]_[+1(9.95e-06)]_27 chr22:20874720-20874800 1.54e-01 80 chr22:21135717-21135797 1.87e-01 80 chr17:72348014-72348094 7.98e-01 80 chr1:226411721-226411801 4.17e-01 80 chr22:19192292-19192372 1.12e-01 80 chr6:170123147-170123227 6.79e-02 70_[+2(8.60e-05)]_2 chr5:10564788-10564868 4.41e-01 80 chr1:245318090-245318170 9.99e-01 80 chr1:231762380-231762460 4.07e-02 63_[+1(9.95e-06)]_9 chr2:20424552-20424632 8.10e-01 80 chr7:158621845-158621925 9.69e-01 80 chr1:166134566-166134646 6.85e-01 80 chr8:134582804-134582884 1.64e-01 80 chr20:3229510-3229590 1.65e-03 53_[+1(9.95e-06)]_19 chr17:76355022-76355102 5.81e-02 26_[+2(1.92e-05)]_46 chr22:42310110-42310190 8.45e-01 80 chr19:18900792-18900872 9.70e-01 80 chr22:19533434-19533514 9.92e-03 30_[+1(2.01e-05)]_42 chr2:71681053-71681133 8.71e-01 80 chr19:8675361-8675441 9.88e-01 80 chr1:23504317-23504397 5.16e-02 27_[+2(1.92e-05)]_45 chr22:21809942-21810022 4.81e-01 80 chr22:23442846-23442926 1.74e-01 48_[+2(8.60e-05)]_24 chr2:54683990-54684070 2.31e-01 17_[+2(6.68e-05)]_55 chr22:23430916-23430996 7.01e-03 9_[+2(1.92e-05)]_63 chr7:16793628-16793708 8.04e-01 80 chr22:19164380-19164460 4.56e-01 80 chr22:21803059-21803139 7.53e-01 80 chr19:1065061-1065141 7.70e-01 80 chr20:62463124-62463204 9.73e-01 80 chr6:91320860-91320940 1.34e-01 12_[+4(7.37e-05)]_60 chr22:23273104-23273184 6.52e-02 67_[+4(3.69e-05)]_5 chr7:129791624-129791704 9.99e-01 80 chr4:113436209-113436289 8.20e-01 80 chr22:19334393-19334473 4.72e-02 50_[+1(8.90e-05)]_22 chr22:19085759-19085839 1.52e-02 62_[+4(2.49e-06)]_10 chr22:20905386-20905466 7.07e-01 80 chr8:94712575-94712655 1.94e-01 38_[+2(8.60e-05)]_34 chr16:3458779-3458859 4.73e-02 80 chr22:19143868-19143948 6.84e-02 80 chr7:50343843-50343923 9.72e-01 80 chr22:23457448-23457528 8.44e-01 80 chr11:43964746-43964826 2.74e-01 80 chr16:10276683-10276763 9.37e-01 80 chr1:6067558-6067638 9.26e-01 80 chr17:1927673-1927753 9.12e-01 80 chr22:20222344-20222424 2.83e-01 80 chr13:100633673-10063375 7.31e-01 80 chr22:20125974-20126054 6.66e-03 12_[+1(8.90e-05)]_49_[+1(9.95e-06)]_\ 3 chr7:23507568-23507648 4.66e-01 80 chr19:55953520-55953600 8.88e-01 80 chr21:43933670-43933750 9.92e-01 80 chr6:150184509-150184589 7.76e-01 80 chr11:2291329-2291409 4.13e-01 80 chr22:23448558-23448638 5.15e-01 80 chr1:180200875-180200955 5.79e-01 80 chr22:20970139-20970219 5.77e-01 80 chr10:72432506-72432586 9.81e-01 80 chr19:7566082-7566162 1.00e+00 80 chr3:194048087-194048167 1.00e+00 80 chr16:77468550-77468630 4.99e-01 80 chr22:23251433-23251513 1.76e-03 6_[+5(2.58e-06)]_66 chr7:142552515-142552595 9.26e-04 46_[+4(6.61e-05)]_8_[+2(1.92e-05)]_\ 10 chr1:15480230-15480310 5.51e-01 80 chr2:69240855-69240935 7.32e-01 80 chr22:23274941-23275021 1.92e-01 80 chr22:23261384-23261464 2.00e-01 80 chr22:21150126-21150206 4.54e-01 80 chr22:22726533-22726613 1.27e-01 80 chr16:71168324-71168404 4.31e-02 32_[+2(8.60e-05)]_40 chr22:20287440-20287520 2.96e-01 80 chr1:1535029-1535109 9.36e-01 80 chr9:91849677-91849757 9.83e-01 80 chr22:20843510-20843590 9.00e-01 80 chr15:68115684-68115764 9.44e-02 49_[+4(2.71e-05)]_23 chr20:60719473-60719553 7.42e-02 80 chr17:27895876-27895956 2.47e-03 38_[+1(4.43e-05)]_34 chr6:28294277-28294357 5.67e-02 80 chr19:14184206-14184286 8.76e-01 80 chr1:180198717-180198797 7.49e-03 12_[+1(2.01e-05)]_60 chr4:153857765-153857845 3.66e-01 80 chr22:21102830-21102910 7.27e-02 80 chr22:19023481-19023561 7.82e-01 80 chr22:20099282-20099362 9.16e-02 63_[+1(4.43e-05)]_9 chr3:33701136-33701216 5.74e-02 35_[+5(9.97e-05)]_37 chr11:64529904-64529984 3.08e-02 80 chr22:23450831-23450911 4.30e-01 80 chr6:109330788-109330868 6.18e-01 80 chr9:123617155-123617235 3.02e-03 35_[+5(2.60e-05)]_37 chr22:21352245-21352325 7.79e-01 80 chr22:19163867-19163947 2.87e-03 21_[+5(2.58e-06)]_51 chr6:170123564-170123644 1.05e-01 33_[+2(2.88e-05)]_39 chr22:23092011-23092091 3.05e-01 80 chr7:150037346-150037426 6.48e-04 63_[+4(1.24e-05)]_9 chr17:45331513-45331593 9.92e-01 80 chr22:23445108-23445188 6.66e-03 60_[+1(5.40e-05)]_12 chr19:46271510-46271590 6.12e-01 80 chr22:19760871-19760951 2.91e-02 57_[+1(9.95e-06)]_15 chr19:10531634-10531714 8.35e-01 80 chr22:20095934-20096014 2.40e-01 80 chr5:102594993-102595073 8.49e-01 80 chr22:21382717-21382797 5.23e-01 80 chr9:101469696-101469776 4.10e-01 80 chr7:129252221-129252301 2.68e-01 80 chr1:205425777-205425857 5.60e-01 80 chr22:23455236-23455316 1.92e-01 80 chr22:20126668-20126748 9.62e-02 80 chr22:21344646-21344726 8.15e-02 20_[+2(6.68e-05)]_52 chr1:118149071-118149151 1.83e-02 20_[+2(1.92e-05)]_52 chr19:18552885-18552965 1.00e+00 80 chr21:35015613-35015693 3.86e-01 80 chr10:31608577-31608657 8.00e-02 23_[+4(2.22e-05)]_49 chr19:17007117-17007197 1.37e-01 20_[+1(4.43e-05)]_52 chr5:95067434-95067514 1.54e-01 80 chr22:20123715-20123795 9.96e-02 80 chr8:143808786-143808866 7.83e-01 80 chr1:6531131-6531211 6.26e-01 80 chr1:169075957-169076037 2.64e-01 80 chr1:44496323-44496403 4.64e-01 80 chr13:91637045-91637125 6.86e-03 58_[+4(2.22e-05)]_14 chr1:201618277-201618357 9.17e-01 80 chr22:19764013-19764093 9.73e-01 80 chr22:19832744-19832824 9.80e-01 80 chr16:3433090-3433170 1.94e-04 37_[+1(5.40e-05)]_1_[+4(2.22e-05)]_\ 26 chr7:143042660-143042740 2.05e-02 1_[+2(1.92e-05)]_71 chr8:22925504-22925584 8.35e-04 30_[+1(8.90e-05)]_1_[+4(6.61e-05)]_\ 33 chr6:143999324-143999404 7.29e-01 80 chr22:19191416-19191496 3.32e-01 80 chr22:19996169-19996249 6.35e-01 80 chr11:44331631-44331711 9.83e-01 80 chr7:149487436-149487516 9.77e-01 80 chr22:19924162-19924242 1.21e-01 80 chr19:36193291-36193371 6.51e-01 80 chr22:19389179-19389259 2.44e-02 80 chr22:20071836-20071916 3.41e-01 80 chr22:19796346-19796426 2.64e-02 67_[+1(8.90e-05)]_5 chr22:22055486-22055566 8.66e-04 38_[+5(2.58e-06)]_7_[+5(8.88e-05)]_\ 19 chr12:113591117-11359119 8.83e-01 80 chr12:95466730-95466810 3.93e-01 80 chr22:22303404-22303484 3.44e-01 80 chr3:194047374-194047454 9.75e-01 80 chr22:19128925-19129005 2.47e-01 80 chr1:234916400-234916480 3.37e-01 80 chr2:111879104-111879184 4.28e-02 29_[+1(9.95e-06)]_43 chr5:73936390-73936470 4.47e-02 62_[+1(4.43e-05)]_10 chr13:81341802-81341882 3.78e-01 80 chr22:20977094-20977174 2.45e-01 80 chr22:23452822-23452902 5.81e-01 80 chr22:21238195-21238275 5.78e-04 26_[+5(5.22e-06)]_46 chr17:15165781-15165861 9.13e-01 80 chr22:21118388-21118468 8.24e-03 10_[+4(2.49e-06)]_62 chr22:19736814-19736894 2.14e-01 80 chr7:135484460-135484540 7.84e-02 80 chr1:145443047-145443127 7.51e-04 72_[+3(1.33e-06)] chr22:19605278-19605358 9.02e-01 80 chr22:20098705-20098785 9.21e-03 80 chr3:12526218-12526298 6.40e-02 80 chr10:71337783-71337863 2.19e-02 45_[+4(4.67e-05)]_27 chr7:130353105-130353185 9.79e-01 80 chr17:2628143-2628223 6.35e-01 80 chr19:2933593-2933673 6.14e-02 80 chr22:21381946-21382026 1.20e-01 80 chr20:62670004-62670084 1.33e-01 80 chr22:22005984-22006064 7.61e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n08.farnam.hpc.yale.internal ********************************************************************************