******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/HDAC2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2:120916410-120916490 1.0000 80 chr7:45027704-45027784 1.0000 80 chr11:3465704-3465784 1.0000 80 chr6:161827825-161827905 1.0000 80 chr20:37089060-37089140 1.0000 80 chr17:42084522-42084602 1.0000 80 chr17:62530047-62530127 1.0000 80 chr22:26880264-26880344 1.0000 80 chr10:1096206-1096286 1.0000 80 chr4:39559988-39560068 1.0000 80 chr2:111920530-111920610 1.0000 80 chr1:167833331-167833411 1.0000 80 chr12:31910153-31910233 1.0000 80 chr1:155829364-155829444 1.0000 80 chr6:105123205-105123285 1.0000 80 chr9:373837-373917 1.0000 80 chr4:153494092-153494172 1.0000 80 chr5:159546895-159546975 1.0000 80 chr17:27046342-27046422 1.0000 80 chr1:154077006-154077086 1.0000 80 chr6:27204222-27204302 1.0000 80 chr9:132806038-132806118 1.0000 80 chr16:67523114-67523194 1.0000 80 chr9:135820753-135820833 1.0000 80 chr12:1281031-1281111 1.0000 80 chr1:26404148-26404228 1.0000 80 chr10:97321516-97321596 1.0000 80 chr7:129595329-129595409 1.0000 80 chr11:96037279-96037359 1.0000 80 chr1:228352359-228352439 1.0000 80 chr19:54605758-54605838 1.0000 80 chr4:48700513-48700593 1.0000 80 chr19:13959054-13959134 1.0000 80 chr11:44564053-44564133 1.0000 80 chr1:16471288-16471368 1.0000 80 chr17:74449422-74449502 1.0000 80 chr20:32891396-32891476 1.0000 80 chr13:114919144-11491922 1.0000 80 chr20:48895857-48895937 1.0000 80 chr6:158403786-158403866 1.0000 80 chr19:17858100-17858180 1.0000 80 chr16:21623413-21623493 1.0000 80 chr19:10534178-10534258 1.0000 80 chr7:97847753-97847833 1.0000 80 chr4:128454691-128454771 1.0000 80 chr7:134278850-134278930 1.0000 80 chr19:13905703-13905783 1.0000 80 chr17:40713698-40713778 1.0000 80 chr12:4430028-4430108 1.0000 80 chr16:87527021-87527101 1.0000 80 chrX:49091648-49091728 1.0000 80 chr19:3627374-3627454 1.0000 80 chr11:64612699-64612779 1.0000 80 chr17:56415998-56416078 1.0000 80 chr12:54753706-54753786 1.0000 80 chr4:129181214-129181294 1.0000 80 chr6:138131788-138131868 1.0000 80 chr1:224031723-224031803 1.0000 80 chr19:45945815-45945895 1.0000 80 chr12:90150885-90150965 1.0000 80 chr3:53290309-53290389 1.0000 80 chr12:109217686-10921776 1.0000 80 chr2:159595031-159595111 1.0000 80 chr5:138524356-138524436 1.0000 80 chr1:38991169-38991249 1.0000 80 chr22:19961931-19962011 1.0000 80 chr19:14116335-14116415 1.0000 80 chr1:25869757-25869837 1.0000 80 chr15:55611905-55611985 1.0000 80 chr19:10196517-10196597 1.0000 80 chr22:22652921-22653001 1.0000 80 chr1:116963153-116963233 1.0000 80 chr11:118444114-11844419 1.0000 80 chr13:50735411-50735491 1.0000 80 chr19:50878360-50878440 1.0000 80 chr1:155036936-155037016 1.0000 80 chr7:102624238-102624318 1.0000 80 chr22:40002825-40002905 1.0000 80 chr3:31586289-31586369 1.0000 80 chr9:97519518-97519598 1.0000 80 chr1:26865123-26865203 1.0000 80 chr5:176924922-176925002 1.0000 80 chr1:41267794-41267874 1.0000 80 chr6:142433766-142433846 1.0000 80 chr3:14446463-14446543 1.0000 80 chr10:72431672-72431752 1.0000 80 chr1:205720047-205720127 1.0000 80 chr1:8940328-8940408 1.0000 80 chr7:73081791-73081871 1.0000 80 chr12:31804060-31804140 1.0000 80 chr19:3035989-3036069 1.0000 80 chr16:30560858-30560938 1.0000 80 chr6:25974271-25974351 1.0000 80 chr1:181687332-181687412 1.0000 80 chr12:133712474-13371255 1.0000 80 chr12:123002511-12300259 1.0000 80 chr20:48532521-48532601 1.0000 80 chr1:31376658-31376738 1.0000 80 chr11:65342933-65343013 1.0000 80 chr19:49122943-49123023 1.0000 80 chr16:14579228-14579308 1.0000 80 chr19:42387916-42387996 1.0000 80 chr11:66313946-66314026 1.0000 80 chr19:3374449-3374529 1.0000 80 chr11:67806828-67806908 1.0000 80 chr9:96830687-96830767 1.0000 80 chr19:17861975-17862055 1.0000 80 chr20:47654647-47654727 1.0000 80 chr6:111580989-111581069 1.0000 80 chr7:2442720-2442800 1.0000 80 chr19:10542002-10542082 1.0000 80 chr15:75918960-75919040 1.0000 80 chr19:3434715-3434795 1.0000 80 chr19:11485003-11485083 1.0000 80 chr1:33862578-33862658 1.0000 80 chr12:101673955-10167403 1.0000 80 chr1:17042623-17042703 1.0000 80 chr1:19986452-19986532 1.0000 80 chr16:47072287-47072367 1.0000 80 chr17:79269605-79269685 1.0000 80 chr6:136572716-136572796 1.0000 80 chr4:8549488-8549568 1.0000 80 chr12:7394172-7394252 1.0000 80 chr5:176790703-176790783 1.0000 80 chr1:12539560-12539640 1.0000 80 chr1:245498283-245498363 1.0000 80 chr1:151763158-151763238 1.0000 80 chr6:44097720-44097800 1.0000 80 chr22:25201830-25201910 1.0000 80 chr8:73924256-73924336 1.0000 80 chr19:9945439-9945519 1.0000 80 chr19:46367135-46367215 1.0000 80 chr17:41481382-41481462 1.0000 80 chr7:45129097-45129177 1.0000 80 chr19:4233553-4233633 1.0000 80 chr9:127534148-127534228 1.0000 80 chr19:3184251-3184331 1.0000 80 chr19:10728251-10728331 1.0000 80 chr11:33979006-33979086 1.0000 80 chr19:56213886-56213966 1.0000 80 chr8:61705482-61705562 1.0000 80 chr16:87811408-87811488 1.0000 80 chr20:55989943-55990023 1.0000 80 chr16:85562550-85562630 1.0000 80 chr3:9994232-9994312 1.0000 80 chr10:73078759-73078839 1.0000 80 chr17:64503397-64503477 1.0000 80 chr2:152991150-152991230 1.0000 80 chr19:14896309-14896389 1.0000 80 chr11:73727494-73727574 1.0000 80 chr9:114364090-114364170 1.0000 80 chr17:65852191-65852271 1.0000 80 chr17:25681776-25681856 1.0000 80 chr19:40791770-40791850 1.0000 80 chr21:45277514-45277594 1.0000 80 chr11:77899460-77899540 1.0000 80 chr1:54355110-54355190 1.0000 80 chr1:39634308-39634388 1.0000 80 chr9:37968295-37968375 1.0000 80 chr1:23811379-23811459 1.0000 80 chr19:39616015-39616095 1.0000 80 chr16:2844612-2844692 1.0000 80 chr12:93571628-93571708 1.0000 80 chr5:176852859-176852939 1.0000 80 chr1:31359717-31359797 1.0000 80 chr16:15149456-15149536 1.0000 80 chr21:40467183-40467263 1.0000 80 chr19:1040822-1040902 1.0000 80 chr6:43879883-43879963 1.0000 80 chr22:23270335-23270415 1.0000 80 chr3:8899703-8899783 1.0000 80 chr16:23568349-23568429 1.0000 80 chr7:150484822-150484902 1.0000 80 chr16:28858152-28858232 1.0000 80 chr1:120930416-120930496 1.0000 80 chr5:81652674-81652754 1.0000 80 chr15:74907324-74907404 1.0000 80 chr3:5061494-5061574 1.0000 80 chr1:109757526-109757606 1.0000 80 chr6:170863012-170863092 1.0000 80 chr19:17716069-17716149 1.0000 80 chr1:28851648-28851728 1.0000 80 chr12:123921697-12392177 1.0000 80 chr16:75543470-75543550 1.0000 80 chr2:43558702-43558782 1.0000 80 chr1:212732608-212732688 1.0000 80 chr6:31739254-31739334 1.0000 80 chr19:18668362-18668442 1.0000 80 chr20:31162227-31162307 1.0000 80 chr6:38764366-38764446 1.0000 80 chr19:2974624-2974704 1.0000 80 chr5:148832091-148832171 1.0000 80 chr1:151961009-151961089 1.0000 80 chr19:45199181-45199261 1.0000 80 chr3:5236543-5236623 1.0000 80 chr19:18174540-18174620 1.0000 80 chr18:987637-987717 1.0000 80 chr3:12909812-12909892 1.0000 80 chr16:11707850-11707930 1.0000 80 chr22:21448110-21448190 1.0000 80 chr12:26999101-26999181 1.0000 80 chr10:21455574-21455654 1.0000 80 chr19:45829823-45829903 1.0000 80 chr12:122250270-12225035 1.0000 80 chr19:18451123-18451203 1.0000 80 chr3:58457134-58457214 1.0000 80 chr5:141742540-141742620 1.0000 80 chr19:14253551-14253631 1.0000 80 chr4:119606109-119606189 1.0000 80 chr7:1500456-1500536 1.0000 80 chr20:44600183-44600263 1.0000 80 chr11:74919733-74919813 1.0000 80 chr22:31460141-31460221 1.0000 80 chr17:76142703-76142783 1.0000 80 chr1:51985238-51985318 1.0000 80 chr15:78730117-78730197 1.0000 80 chr6:30910574-30910654 1.0000 80 chr6:35889146-35889226 1.0000 80 chr8:131027659-131027739 1.0000 80 chr19:1400697-1400777 1.0000 80 chr11:74204027-74204107 1.0000 80 chr16:85362814-85362894 1.0000 80 chr20:634389-634469 1.0000 80 chr9:130547159-130547239 1.0000 80 chr10:97051230-97051310 1.0000 80 chr15:45709910-45709990 1.0000 80 chr1:229485297-229485377 1.0000 80 chr3:46441797-46441877 1.0000 80 chr19:46406312-46406392 1.0000 80 chr6:106968855-106968935 1.0000 80 chr10:80843148-80843228 1.0000 80 chr2:42876762-42876842 1.0000 80 chr11:75255078-75255158 1.0000 80 chr6:16056808-16056888 1.0000 80 chr16:85359891-85359971 1.0000 80 chr19:4555866-4555946 1.0000 80 chr16:3018968-3019048 1.0000 80 chr15:62386780-62386860 1.0000 80 chr19:13049016-13049096 1.0000 80 chr5:175624467-175624547 1.0000 80 chr1:223866723-223866803 1.0000 80 chr16:50105144-50105224 1.0000 80 chr1:245126907-245126987 1.0000 80 chr2:42149440-42149520 1.0000 80 chr13:41255672-41255752 1.0000 80 chr1:111019935-111020015 1.0000 80 chr5:148819753-148819833 1.0000 80 chr6:43902522-43902602 1.0000 80 chr20:3776514-3776594 1.0000 80 chr6:43707033-43707113 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_HDAC2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/HDAC2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.256 C 0.241 G 0.24 T 0.264 Background letter frequencies (from file dataset with add-one prior applied): A 0.256 C 0.241 G 0.24 T 0.263 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CYCAKTTT MEME-1 width = 8 sites = 75 llr = 633 E-value = 5.7e-051 ******************************************************************************** -------------------------------------------------------------------------------- Motif CYCAKTTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::a:::: pos.-specific C a5a::111 probability G ::::5:1: matrix T :5::4999 bits 2.1 * ** 1.9 * ** 1.6 * ** * 1.4 * ** * * Relative 1.2 * ** *** Entropy 1.0 **** *** (12.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTCAGTTT consensus C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCAKTTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:43707033-43707113 12 1.71e-05 ggctttgggc ctcagttt tctcatctgt chr6:16056808-16056888 61 1.71e-05 atctctgtgc ctcagttt gctcatctat chr16:85362814-85362894 21 1.71e-05 ttttctgcac ctcagttt gttcatctgt chr6:35889146-35889226 51 1.71e-05 TGGGATCTgc ctcagttt cctggcctgt chr12:122250270-12225035 23 1.71e-05 ctttctgagt ctcagttt cgtcatctgc chr19:45199181-45199261 45 1.71e-05 GGCCCGgggc ctcagttt acttgtctgc chr19:17716069-17716149 26 1.71e-05 ctctttaagc ctcagttt tgccatctgt chr3:5061494-5061574 44 1.71e-05 taactctagt ctcagttt tcccatctct chr15:74907324-74907404 8 1.71e-05 TCCCCAc ctcagttt tctcatctgg chr16:23568349-23568429 22 1.71e-05 gctcctgcac ctcagttt ccgcctctgt chr1:23811379-23811459 28 1.71e-05 cttctggaac ctcagttt ccttatctgt chr1:39634308-39634388 61 1.71e-05 tttcctgagc ctcagttt tttcatctgt chr1:54355110-54355190 13 1.71e-05 tcctcgcggc ctcagttt cctcatctgt chr11:33979006-33979086 35 1.71e-05 tgaggaagac ctcagttt cctcatctgt chr16:47072287-47072367 56 1.71e-05 tcttccaggc ctcagttt cgacgtctgt chr6:111580989-111581069 41 1.71e-05 ctgactgggc ctcagttt catcatctag chr19:17861975-17862055 12 1.71e-05 ctctctgagc ctcagttt gcccagtctg chr9:96830687-96830767 15 1.71e-05 taacatgttc ctcagttt gggtttgtct chr1:205720047-205720127 57 1.71e-05 ttctctgtgc ctcagttt tctcatctgt chr17:56415998-56416078 40 1.71e-05 gtaatggaaa ctcagttt tctcatctgt chr17:40713698-40713778 14 1.71e-05 CACACAAGgc ctcagttt ttccatctgt chr1:16471288-16471368 47 1.71e-05 ctctccggac ctcagttt cctcatctgt chr19:13959054-13959134 37 1.71e-05 tgctccaggc ctcagttt acctagctgt chr19:54605758-54605838 14 1.71e-05 ttctcccggg ctcagttt cttcgtctgt chr10:97321516-97321596 28 1.71e-05 actcctgggc ctcagttt acccatctgt chr9:135820753-135820833 51 1.71e-05 tcctccaagc ctcagttt cttcctctgt chr22:26880264-26880344 39 1.71e-05 atctctgtgc ctcagttt tctcatctgt chr19:3434715-3434795 10 3.27e-05 tgtgtgtgc cccagttt ccccatccat chr6:43902522-43902602 34 6.86e-05 CGGtattatc cccatttt acagatttgg chr1:229485297-229485377 16 6.86e-05 ctattatgtg cccatttt acagatgatg chr10:97051230-97051310 33 6.86e-05 gacgtttagt cccatttt acagatgaag chr20:634389-634469 32 6.86e-05 gactgttatt cccatttt acagaagagg chr19:1400697-1400777 39 6.86e-05 ACTGGACGTG CCCATTTT CAGGGTGGGA chr20:44600183-44600263 1 6.86e-05 . CCCATTTT GCAGATGCGA chr6:31739254-31739334 19 6.86e-05 atAACTGata cccatttt acagatgatg chr5:81652674-81652754 21 6.86e-05 ttggtagagt cccatttt acagatggaa chr6:43879883-43879963 19 6.86e-05 cctccttatt cccatttt acagatgagg chr22:25201830-25201910 1 6.86e-05 . cccatttt ataccacatt chr19:11485003-11485083 5 6.86e-05 aagc cccatttt acagcagggc chr3:14446463-14446543 31 6.86e-05 GTGAGCAGTA CCCATTTT ATAGATGGAC chr1:41267794-41267874 11 6.86e-05 gtcttctctc cccatttt ccggatgagg chr1:26865123-26865203 14 6.86e-05 tgttactgtc cccatttt acagatgaga chr19:14116335-14116415 21 6.86e-05 Aatgattctc cccatttt acaggatgga chr3:53290309-53290389 39 6.86e-05 CACGGCGAAT cccatttt agagatggac chr1:224031723-224031803 22 6.86e-05 tactattatc cccatttt acagatgatg chr6:138131788-138131868 9 6.86e-05 attttgca cccatttt gcagatgagg chr19:3627374-3627454 37 6.86e-05 CCCCCATCAA cccatttt agagacgggg chrX:49091648-49091728 11 6.86e-05 tgtcaatagt cccatttt acagatgagg chr6:158403786-158403866 21 6.86e-05 tattattatc cccatttt gcagatgagc chr1:26404148-26404228 12 6.86e-05 cactaccatc cccatttt acagatgaga chr1:111019935-111020015 27 9.99e-05 ctctgaatga ctcagttc aatccctggt chr6:106968855-106968935 64 9.99e-05 GGTTCCCTAT CTCAGTCT TCAGTGTCA chr12:123921697-12392177 37 9.99e-05 gtctccgagc ctcagtct cctcctctgt chr19:46367135-46367215 26 9.99e-05 CGTCGGAAGC CTCAGTCT TCCTGTCTGT chr1:25869757-25869837 37 9.99e-05 tggaggagcc ctcagtct ccccatctgt chr17:27046342-27046422 65 9.99e-05 ctctctggac ctcagttC GACCGAGC chr19:45829823-45829903 16 1.29e-04 GGACTCCTGT CCCAGTCT TTGCCATTCC chr5:148819753-148819833 63 1.94e-04 tattctcatg cccattct acagacatgg chr22:23270335-23270415 5 1.94e-04 tgtg cccatttc acagatgaga chr11:77899460-77899540 32 1.94e-04 cgatgccatc cccatttc acagatggga chr20:55989943-55990023 24 1.94e-04 gttgactgtg cccatttc acagatggga chr11:67806828-67806908 28 1.94e-04 GAGGGAGGGA cccattct acagatgggg chr19:10196517-10196597 32 1.94e-04 caggattctc cccatttc acagaggggt chr22:19961931-19962011 8 1.94e-04 AAGCGtt cccatttc acagaggaac chr2:152991150-152991230 45 2.28e-04 atccctcagc ctcagtgt ccttatctgt chr6:25974271-25974351 33 2.28e-04 gatatgttat ctcaattt ttgtggttca chr15:55611905-55611985 39 2.28e-04 atttctgggc ctcaattt gctcgtctgt chr20:32891396-32891476 53 2.28e-04 ttccctgtgc ctcaattt cctcatctgt chr2:43558702-43558782 41 2.75e-04 GCAGCTTTCC CTCAGCTT GATCTCCTCA chr12:133712474-13371255 33 2.75e-04 TCTCCGTAAC CTCAGCTT ATCTTTTGTC chr1:38991169-38991249 38 2.75e-04 ctttctaggc ctcagctt cctcatctgt chr1:245126907-245126987 28 3.39e-04 aaaaTGGTGA CTCATCtt cttatctcca chr5:175624467-175624547 69 3.39e-04 tttaccgggg cccattgt atga chr1:12539560-12539640 37 3.39e-04 ctatactttc cccattgt acagatggga chr19:42387916-42387996 22 3.39e-04 GAGGCCTTct cccattgt acggatggga -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCAKTTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:43707033-43707113 1.7e-05 11_[+1]_61 chr6:16056808-16056888 1.7e-05 60_[+1]_12 chr16:85362814-85362894 1.7e-05 20_[+1]_52 chr6:35889146-35889226 1.7e-05 50_[+1]_22 chr12:122250270-12225035 1.7e-05 22_[+1]_50 chr19:45199181-45199261 1.7e-05 44_[+1]_28 chr19:17716069-17716149 1.7e-05 25_[+1]_47 chr3:5061494-5061574 1.7e-05 43_[+1]_29 chr15:74907324-74907404 1.7e-05 7_[+1]_65 chr16:23568349-23568429 1.7e-05 21_[+1]_51 chr1:23811379-23811459 1.7e-05 27_[+1]_45 chr1:39634308-39634388 1.7e-05 60_[+1]_12 chr1:54355110-54355190 1.7e-05 12_[+1]_60 chr11:33979006-33979086 1.7e-05 34_[+1]_38 chr16:47072287-47072367 1.7e-05 55_[+1]_17 chr6:111580989-111581069 1.7e-05 40_[+1]_32 chr19:17861975-17862055 1.7e-05 11_[+1]_61 chr9:96830687-96830767 1.7e-05 14_[+1]_58 chr1:205720047-205720127 1.7e-05 56_[+1]_16 chr17:56415998-56416078 1.7e-05 39_[+1]_33 chr17:40713698-40713778 1.7e-05 13_[+1]_59 chr1:16471288-16471368 1.7e-05 46_[+1]_26 chr19:13959054-13959134 1.7e-05 36_[+1]_36 chr19:54605758-54605838 1.7e-05 13_[+1]_59 chr10:97321516-97321596 1.7e-05 27_[+1]_45 chr9:135820753-135820833 1.7e-05 50_[+1]_22 chr22:26880264-26880344 1.7e-05 38_[+1]_34 chr19:3434715-3434795 3.3e-05 9_[+1]_63 chr6:43902522-43902602 6.9e-05 33_[+1]_39 chr1:229485297-229485377 6.9e-05 15_[+1]_57 chr10:97051230-97051310 6.9e-05 32_[+1]_40 chr20:634389-634469 6.9e-05 31_[+1]_41 chr19:1400697-1400777 6.9e-05 38_[+1]_34 chr20:44600183-44600263 6.9e-05 [+1]_72 chr6:31739254-31739334 6.9e-05 18_[+1]_54 chr5:81652674-81652754 6.9e-05 20_[+1]_52 chr6:43879883-43879963 6.9e-05 18_[+1]_54 chr22:25201830-25201910 6.9e-05 [+1]_72 chr19:11485003-11485083 6.9e-05 4_[+1]_68 chr3:14446463-14446543 6.9e-05 30_[+1]_42 chr1:41267794-41267874 6.9e-05 10_[+1]_62 chr1:26865123-26865203 6.9e-05 13_[+1]_59 chr19:14116335-14116415 6.9e-05 20_[+1]_52 chr3:53290309-53290389 6.9e-05 38_[+1]_34 chr1:224031723-224031803 6.9e-05 21_[+1]_51 chr6:138131788-138131868 6.9e-05 8_[+1]_64 chr19:3627374-3627454 6.9e-05 36_[+1]_36 chrX:49091648-49091728 6.9e-05 10_[+1]_62 chr6:158403786-158403866 6.9e-05 20_[+1]_52 chr1:26404148-26404228 6.9e-05 11_[+1]_61 chr1:111019935-111020015 0.0001 26_[+1]_46 chr6:106968855-106968935 0.0001 63_[+1]_9 chr12:123921697-12392177 0.0001 36_[+1]_36 chr19:46367135-46367215 0.0001 25_[+1]_47 chr1:25869757-25869837 0.0001 36_[+1]_36 chr17:27046342-27046422 0.0001 64_[+1]_8 chr19:45829823-45829903 0.00013 15_[+1]_57 chr5:148819753-148819833 0.00019 62_[+1]_10 chr22:23270335-23270415 0.00019 4_[+1]_68 chr11:77899460-77899540 0.00019 31_[+1]_41 chr20:55989943-55990023 0.00019 23_[+1]_49 chr11:67806828-67806908 0.00019 27_[+1]_45 chr19:10196517-10196597 0.00019 31_[+1]_41 chr22:19961931-19962011 0.00019 7_[+1]_65 chr2:152991150-152991230 0.00023 44_[+1]_28 chr6:25974271-25974351 0.00023 32_[+1]_40 chr15:55611905-55611985 0.00023 38_[+1]_34 chr20:32891396-32891476 0.00023 52_[+1]_20 chr2:43558702-43558782 0.00027 40_[+1]_32 chr12:133712474-13371255 0.00027 32_[+1]_40 chr1:38991169-38991249 0.00027 37_[+1]_35 chr1:245126907-245126987 0.00034 27_[+1]_45 chr5:175624467-175624547 0.00034 68_[+1]_4 chr1:12539560-12539640 0.00034 36_[+1]_36 chr19:42387916-42387996 0.00034 21_[+1]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCAKTTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CYCAKTTT width=8 seqs=75 chr6:43707033-43707113 ( 12) CTCAGTTT 1 chr6:16056808-16056888 ( 61) CTCAGTTT 1 chr16:85362814-85362894 ( 21) CTCAGTTT 1 chr6:35889146-35889226 ( 51) CTCAGTTT 1 chr12:122250270-12225035 ( 23) CTCAGTTT 1 chr19:45199181-45199261 ( 45) CTCAGTTT 1 chr19:17716069-17716149 ( 26) CTCAGTTT 1 chr3:5061494-5061574 ( 44) CTCAGTTT 1 chr15:74907324-74907404 ( 8) CTCAGTTT 1 chr16:23568349-23568429 ( 22) CTCAGTTT 1 chr1:23811379-23811459 ( 28) CTCAGTTT 1 chr1:39634308-39634388 ( 61) CTCAGTTT 1 chr1:54355110-54355190 ( 13) CTCAGTTT 1 chr11:33979006-33979086 ( 35) CTCAGTTT 1 chr16:47072287-47072367 ( 56) CTCAGTTT 1 chr6:111580989-111581069 ( 41) CTCAGTTT 1 chr19:17861975-17862055 ( 12) CTCAGTTT 1 chr9:96830687-96830767 ( 15) CTCAGTTT 1 chr1:205720047-205720127 ( 57) CTCAGTTT 1 chr17:56415998-56416078 ( 40) CTCAGTTT 1 chr17:40713698-40713778 ( 14) CTCAGTTT 1 chr1:16471288-16471368 ( 47) CTCAGTTT 1 chr19:13959054-13959134 ( 37) CTCAGTTT 1 chr19:54605758-54605838 ( 14) CTCAGTTT 1 chr10:97321516-97321596 ( 28) CTCAGTTT 1 chr9:135820753-135820833 ( 51) CTCAGTTT 1 chr22:26880264-26880344 ( 39) CTCAGTTT 1 chr19:3434715-3434795 ( 10) CCCAGTTT 1 chr6:43902522-43902602 ( 34) CCCATTTT 1 chr1:229485297-229485377 ( 16) CCCATTTT 1 chr10:97051230-97051310 ( 33) CCCATTTT 1 chr20:634389-634469 ( 32) CCCATTTT 1 chr19:1400697-1400777 ( 39) CCCATTTT 1 chr20:44600183-44600263 ( 1) CCCATTTT 1 chr6:31739254-31739334 ( 19) CCCATTTT 1 chr5:81652674-81652754 ( 21) CCCATTTT 1 chr6:43879883-43879963 ( 19) CCCATTTT 1 chr22:25201830-25201910 ( 1) CCCATTTT 1 chr19:11485003-11485083 ( 5) CCCATTTT 1 chr3:14446463-14446543 ( 31) CCCATTTT 1 chr1:41267794-41267874 ( 11) CCCATTTT 1 chr1:26865123-26865203 ( 14) CCCATTTT 1 chr19:14116335-14116415 ( 21) CCCATTTT 1 chr3:53290309-53290389 ( 39) CCCATTTT 1 chr1:224031723-224031803 ( 22) CCCATTTT 1 chr6:138131788-138131868 ( 9) CCCATTTT 1 chr19:3627374-3627454 ( 37) CCCATTTT 1 chrX:49091648-49091728 ( 11) CCCATTTT 1 chr6:158403786-158403866 ( 21) CCCATTTT 1 chr1:26404148-26404228 ( 12) CCCATTTT 1 chr1:111019935-111020015 ( 27) CTCAGTTC 1 chr6:106968855-106968935 ( 64) CTCAGTCT 1 chr12:123921697-12392177 ( 37) CTCAGTCT 1 chr19:46367135-46367215 ( 26) CTCAGTCT 1 chr1:25869757-25869837 ( 37) CTCAGTCT 1 chr17:27046342-27046422 ( 65) CTCAGTTC 1 chr19:45829823-45829903 ( 16) CCCAGTCT 1 chr5:148819753-148819833 ( 63) CCCATTCT 1 chr22:23270335-23270415 ( 5) CCCATTTC 1 chr11:77899460-77899540 ( 32) CCCATTTC 1 chr20:55989943-55990023 ( 24) CCCATTTC 1 chr11:67806828-67806908 ( 28) CCCATTCT 1 chr19:10196517-10196597 ( 32) CCCATTTC 1 chr22:19961931-19962011 ( 8) CCCATTTC 1 chr2:152991150-152991230 ( 45) CTCAGTGT 1 chr6:25974271-25974351 ( 33) CTCAATTT 1 chr15:55611905-55611985 ( 39) CTCAATTT 1 chr20:32891396-32891476 ( 53) CTCAATTT 1 chr2:43558702-43558782 ( 41) CTCAGCTT 1 chr12:133712474-13371255 ( 33) CTCAGCTT 1 chr1:38991169-38991249 ( 38) CTCAGCTT 1 chr1:245126907-245126987 ( 28) CTCATCTT 1 chr5:175624467-175624547 ( 69) CCCATTGT 1 chr1:12539560-12539640 ( 37) CCCATTGT 1 chr19:42387916-42387996 ( 22) CCCATTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCAKTTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.80899 E= 5.7e-051 -1287 205 -1287 -1287 -1287 91 -1287 105 -1287 205 -1287 -1287 197 -1287 -1287 -1287 -268 -1287 112 74 -1287 -218 -1287 184 -1287 -137 -217 170 -1287 -137 -1287 178 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCAKTTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 75 E= 5.7e-051 0.000000 1.000000 0.000000 0.000000 0.000000 0.453333 0.000000 0.546667 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.040000 0.000000 0.520000 0.440000 0.000000 0.053333 0.000000 0.946667 0.000000 0.093333 0.053333 0.853333 0.000000 0.093333 0.000000 0.906667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCAKTTT MEME-1 regular expression -------------------------------------------------------------------------------- C[TC]CA[GT]TTT -------------------------------------------------------------------------------- Time 4.97 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAMTGRG MEME-2 width = 8 sites = 96 llr = 713 E-value = 3.2e-039 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAMTGRG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 7984::5: pos.-specific C 2::5:::: probability G 112::a5a matrix T ::::a::: bits 2.1 * 1.9 ** * 1.6 ** * 1.4 * ** * Relative 1.2 ** ** * Entropy 1.0 ** **** (10.7 bits) 0.8 ** **** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAACTGGG consensus C GA A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMTGRG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:102624238-102624318 11 1.47e-05 gataactgta aaactggg tcacaggatg chr20:3776514-3776594 19 4.60e-05 ccaggtctgt aaaatggg gTGTCTAACG chr6:43902522-43902602 52 4.60e-05 acagatttgg aaactgag actggagaaa chr16:85359891-85359971 62 4.60e-05 actcatctgt aaaatggg gatgatTGTT chr11:75255078-75255158 67 4.60e-05 tctcatctat aaaatggg gataat chr16:85362814-85362894 39 4.60e-05 gttcatctgt aaaatggg ggtggacgct chr1:51985238-51985318 41 4.60e-05 ctgcttctga aaaatggg ggaaattgta chr4:119606109-119606189 13 4.60e-05 acagatgaca aaactgag gctcacgaag chr19:45199181-45199261 63 4.60e-05 acttgtctgc aaaatggg TTTTCTTGGG chr12:123921697-12392177 55 4.60e-05 cctcctctgt aaaatggg gacaatagcg chr16:23568349-23568429 40 4.60e-05 ccgcctctgt aaaatggg CTCGCGCTGC chr6:43879883-43879963 37 4.60e-05 acagatgagg aaactgag gcccagaatg chr1:54355110-54355190 31 4.60e-05 cctcatctgt aaaatggg tgcataacga chr22:25201830-25201910 40 4.60e-05 aaagatgaga aaactgag gcttggagaA chr5:176790703-176790783 35 4.60e-05 agagaggaaa aaactgag gcacagagag chr19:11485003-11485083 23 4.60e-05 acagcagggc aaactgag gctaggagcc chr19:3434715-3434795 28 4.60e-05 ccccatccat aaaatggg atcatacccc chr6:111580989-111581069 59 4.60e-05 catcatctag aaaatggg cacaatTCTA chr11:65342933-65343013 14 4.60e-05 atagacgttg aaactgag gctcagagtg chr7:73081791-73081871 15 4.60e-05 acagaagaga aaactgag gcttggggag chr3:14446463-14446543 49 4.60e-05 ATAGATGGAC AAACTGAG AGCCACCTAA chr1:41267794-41267874 29 4.60e-05 ccggatgagg aaactgag tctccgtaag chr5:176924922-176925002 40 4.60e-05 gctactccga aaaatggg acgatcatac chr19:10196517-10196597 50 4.60e-05 acagaggggt aaactgag gttgagagag chr15:55611905-55611985 57 4.60e-05 gctcgtctgt aaaatggg gctaataata chr19:14116335-14116415 39 4.60e-05 acaggatgga aaactgag gcctcagatg chr22:19961931-19962011 26 4.60e-05 acagaggaac aaactgag gctcaaatca chr1:38991169-38991249 56 4.60e-05 cctcatctgt aaaatggg catatcctat chr3:53290309-53290389 57 4.60e-05 agagatggac aaactgag gcttggcaag chr19:45945815-45945895 17 4.60e-05 agagatggga aaactgag gcttggagag chr1:224031723-224031803 40 4.60e-05 acagatgatg aaactgag ggacaagttt chr19:3627374-3627454 55 4.60e-05 agagacgggg aaactgag gctcagagag chr6:158403786-158403866 39 4.60e-05 gcagatgagc aaactgag gcctaaagag chr20:32891396-32891476 71 4.60e-05 cctcatctgt aaaatggg cc chr1:16471288-16471368 65 4.60e-05 cctcatctgt aaaatggg gatcaagt chr19:13959054-13959134 55 4.60e-05 acctagctgt aaaatggg catgatagca chr19:54605758-54605838 32 4.60e-05 cttcgtctgt aaaatggg CTTTCATACA chr1:26404148-26404228 30 4.60e-05 acagatgaga aaactgag tcacacagag chr18:987637-987717 69 6.27e-05 cagtgagtgt aaaatgag gtcc chr6:35889146-35889226 37 7.65e-05 GCTTCGGAGG CAACTGGG ATCTgcctca chr12:1281031-1281111 9 7.65e-05 GCTCCTGA CAACTGGG CAGGGCTGAT chr12:122250270-12225035 41 1.06e-04 cgtcatctgc caaatggg cctgtgagag chr1:212732608-212732688 21 1.06e-04 AACGGAAGAA CAACTGAG CCTAGTTGGA chr19:17716069-17716149 44 1.06e-04 tgccatctgt caaatggg tgtgttgaac chr16:85562550-85562630 40 1.06e-04 tactcagaat caaatggg agccatggag chr10:72431672-72431752 2 1.06e-04 a caactgag gctcagagct chr9:97519518-97519598 21 1.06e-04 gccagatcat caactgag aatgagtcag chr19:13049016-13049096 5 1.65e-04 AGAG AAGCTGAG GGCAGGGTCC chr20:55989943-55990023 48 1.65e-04 gggaaaacca aagctgag cagatttggc chr11:67806828-67806908 46 1.65e-04 acagatgggg aagctgag accacacaac chr22:31460141-31460221 22 1.94e-04 GGAAGAAGCA GAACTGGG CAGGTGAGCT chr17:76142703-76142783 54 2.36e-04 acccatctgc gaaatggg cggatgagag chr4:8549488-8549568 73 2.36e-04 cctcacctgt gaaatggg chr11:66313946-66314026 33 2.36e-04 tcctgactgt gaaatggg gataGGGCTC chr12:123002511-12300259 50 2.36e-04 TTAAAAATCT CAgctggg cagagtgact chr17:40713698-40713778 32 2.36e-04 ttccatctgt gaaatggg tacgtggaca chr19:13905703-13905783 66 2.36e-04 tcgggtcgca cagctggg agggacg chr9:135820753-135820833 69 2.36e-04 cttcctctgt gaaatggg cata chr1:245126907-245126987 51 2.80e-04 ctccatttta cagatggg gaaactgatg chr16:11707850-11707930 71 2.80e-04 ACAGACGGGG CAGCTGAG GC chr1:31359717-31359797 4 2.80e-04 tca cagatggg caaactaaaa chr1:39634308-39634388 20 2.80e-04 ctacatttat cagctgag tgacctgggg chr11:77899460-77899540 41 2.80e-04 ccccatttca cagatggg aatggcgagg chr19:10728251-10728331 1 2.80e-04 . CAGCTGAG ACTCCCTCAT chr9:127534148-127534228 42 2.80e-04 GCCCATAGAA CAGATGGG CAAACTAAGC chr1:12539560-12539640 46 2.80e-04 ccccattgta cagatggg aaagttgagg chr22:23270335-23270415 14 3.08e-04 gcccatttca cagatgag aggactgagg chr10:73078759-73078839 63 3.08e-04 AGTGCGTTTA AGACTGGG TGACTCACTT chr1:26865123-26865203 23 3.08e-04 ccccatttta cagatgag aaaattgagg chr6:138131788-138131868 18 3.08e-04 acccattttg cagatgag gaaatagagg chrX:49091648-49091728 20 3.08e-04 tcccatttta cagatgag gagactaaga chr20:634389-634469 50 3.38e-04 acagaagagg agactgag acacaggttt chr20:31162227-31162307 12 3.38e-04 gctaacctgt agaatggg gtcataacac chr3:5061494-5061574 62 3.38e-04 tcccatctct agaatggg gattattcat chr9:96830687-96830767 50 3.38e-04 cctcatgata agactgag attatgcatt chr19:42387916-42387996 40 3.38e-04 acggatggga agactgag gtctacagag chr1:229485297-229485377 34 3.86e-04 acagatgatg aaattgag gactagacct chr5:81652674-81652754 39 3.86e-04 acagatggaa aaattgag atgaaaaaga chr17:64503397-64503477 2 3.86e-04 c aaattgag gcttgaggta chr15:74907324-74907404 26 4.01e-04 tctcatctgg aaagtggg gcctcgtaat chr5:148832091-148832171 19 4.29e-04 Gtaggtcaga gagctggg tttgcgtcag chr6:27204222-27204302 22 4.29e-04 CTGGCTTCGG AAAGTGAG CTGATCAGGG chr11:3465704-3465784 12 4.29e-04 tgctgaaccc aaagtgag ttcaaatccg chr1:155829364-155829444 17 4.70e-04 AGCATCTTAA GAGCTGAG CGCAGCTGAC chr22:26880264-26880344 57 4.70e-04 tctcatctgt gagatggg gatgaaaata chr3:46441797-46441877 48 5.40e-04 AATTTATCTA AGGCTGGG GCTTCAAGAG chr21:45277514-45277594 25 5.83e-04 gcactttggg aggctgag gtgggcagat chr12:31804060-31804140 28 5.83e-04 aacaatagat aaactgga agtcttacaa chr6:43707033-43707113 30 6.46e-04 tctcatctgt aaaatgga tatattaata chr17:25681776-25681856 55 6.46e-04 cttcatctgt aaaatgga cgcagtagta chr19:3035989-3036069 53 6.46e-04 acagataggt aaactgaa gcaaagagta chr11:118444114-11844419 7 6.46e-04 GTTACA AGGATGAG AAAGGTTAAT chr1:19986452-19986532 21 6.80e-04 TGAGAGACGT CAATTGAG AAGCATCCCT chr1:111019935-111020015 62 9.24e-04 ccttatctgt aaaatgtg agatttACAA chr7:134278850-134278930 52 9.24e-04 CTGGAGGGAT TAACTGGG CCTTTATCTA chr1:116963153-116963233 46 1.26e-03 AGATTAAACC AAACTCAG TCCAGCTTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMTGRG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:102624238-102624318 1.5e-05 10_[+2]_62 chr20:3776514-3776594 4.6e-05 18_[+2]_54 chr6:43902522-43902602 4.6e-05 51_[+2]_21 chr16:85359891-85359971 4.6e-05 61_[+2]_11 chr11:75255078-75255158 4.6e-05 66_[+2]_6 chr16:85362814-85362894 4.6e-05 38_[+2]_34 chr1:51985238-51985318 4.6e-05 40_[+2]_32 chr4:119606109-119606189 4.6e-05 12_[+2]_60 chr19:45199181-45199261 4.6e-05 62_[+2]_10 chr12:123921697-12392177 4.6e-05 54_[+2]_18 chr16:23568349-23568429 4.6e-05 39_[+2]_33 chr6:43879883-43879963 4.6e-05 36_[+2]_36 chr1:54355110-54355190 4.6e-05 30_[+2]_42 chr22:25201830-25201910 4.6e-05 39_[+2]_33 chr5:176790703-176790783 4.6e-05 34_[+2]_38 chr19:11485003-11485083 4.6e-05 22_[+2]_50 chr19:3434715-3434795 4.6e-05 27_[+2]_45 chr6:111580989-111581069 4.6e-05 58_[+2]_14 chr11:65342933-65343013 4.6e-05 13_[+2]_59 chr7:73081791-73081871 4.6e-05 14_[+2]_58 chr3:14446463-14446543 4.6e-05 48_[+2]_24 chr1:41267794-41267874 4.6e-05 28_[+2]_44 chr5:176924922-176925002 4.6e-05 39_[+2]_33 chr19:10196517-10196597 4.6e-05 49_[+2]_23 chr15:55611905-55611985 4.6e-05 56_[+2]_16 chr19:14116335-14116415 4.6e-05 38_[+2]_34 chr22:19961931-19962011 4.6e-05 25_[+2]_47 chr1:38991169-38991249 4.6e-05 55_[+2]_17 chr3:53290309-53290389 4.6e-05 56_[+2]_16 chr19:45945815-45945895 4.6e-05 16_[+2]_56 chr1:224031723-224031803 4.6e-05 39_[+2]_33 chr19:3627374-3627454 4.6e-05 54_[+2]_18 chr6:158403786-158403866 4.6e-05 38_[+2]_34 chr20:32891396-32891476 4.6e-05 70_[+2]_2 chr1:16471288-16471368 4.6e-05 64_[+2]_8 chr19:13959054-13959134 4.6e-05 54_[+2]_18 chr19:54605758-54605838 4.6e-05 31_[+2]_41 chr1:26404148-26404228 4.6e-05 29_[+2]_43 chr18:987637-987717 6.3e-05 68_[+2]_4 chr6:35889146-35889226 7.6e-05 36_[+2]_36 chr12:1281031-1281111 7.6e-05 8_[+2]_64 chr12:122250270-12225035 0.00011 40_[+2]_32 chr1:212732608-212732688 0.00011 20_[+2]_52 chr19:17716069-17716149 0.00011 43_[+2]_29 chr16:85562550-85562630 0.00011 39_[+2]_33 chr10:72431672-72431752 0.00011 1_[+2]_71 chr9:97519518-97519598 0.00011 20_[+2]_52 chr19:13049016-13049096 0.00016 4_[+2]_68 chr20:55989943-55990023 0.00016 47_[+2]_25 chr11:67806828-67806908 0.00016 45_[+2]_27 chr22:31460141-31460221 0.00019 21_[+2]_51 chr17:76142703-76142783 0.00024 53_[+2]_19 chr4:8549488-8549568 0.00024 72_[+2] chr11:66313946-66314026 0.00024 32_[+2]_40 chr12:123002511-12300259 0.00024 49_[+2]_23 chr17:40713698-40713778 0.00024 31_[+2]_41 chr19:13905703-13905783 0.00024 65_[+2]_7 chr9:135820753-135820833 0.00024 68_[+2]_4 chr1:245126907-245126987 0.00028 50_[+2]_22 chr16:11707850-11707930 0.00028 70_[+2]_2 chr1:31359717-31359797 0.00028 3_[+2]_69 chr1:39634308-39634388 0.00028 19_[+2]_53 chr11:77899460-77899540 0.00028 40_[+2]_32 chr19:10728251-10728331 0.00028 [+2]_72 chr9:127534148-127534228 0.00028 41_[+2]_31 chr1:12539560-12539640 0.00028 45_[+2]_27 chr22:23270335-23270415 0.00031 13_[+2]_59 chr10:73078759-73078839 0.00031 62_[+2]_10 chr1:26865123-26865203 0.00031 22_[+2]_50 chr6:138131788-138131868 0.00031 17_[+2]_55 chrX:49091648-49091728 0.00031 19_[+2]_53 chr20:634389-634469 0.00034 49_[+2]_23 chr20:31162227-31162307 0.00034 11_[+2]_61 chr3:5061494-5061574 0.00034 61_[+2]_11 chr9:96830687-96830767 0.00034 49_[+2]_23 chr19:42387916-42387996 0.00034 39_[+2]_33 chr1:229485297-229485377 0.00039 33_[+2]_39 chr5:81652674-81652754 0.00039 38_[+2]_34 chr17:64503397-64503477 0.00039 1_[+2]_71 chr15:74907324-74907404 0.0004 25_[+2]_47 chr5:148832091-148832171 0.00043 18_[+2]_54 chr6:27204222-27204302 0.00043 21_[+2]_51 chr11:3465704-3465784 0.00043 11_[+2]_61 chr1:155829364-155829444 0.00047 16_[+2]_56 chr22:26880264-26880344 0.00047 56_[+2]_16 chr3:46441797-46441877 0.00054 47_[+2]_25 chr21:45277514-45277594 0.00058 24_[+2]_48 chr12:31804060-31804140 0.00058 27_[+2]_45 chr6:43707033-43707113 0.00065 29_[+2]_43 chr17:25681776-25681856 0.00065 54_[+2]_18 chr19:3035989-3036069 0.00065 52_[+2]_20 chr11:118444114-11844419 0.00065 6_[+2]_66 chr1:19986452-19986532 0.00068 20_[+2]_52 chr1:111019935-111020015 0.00092 61_[+2]_11 chr7:134278850-134278930 0.00092 51_[+2]_21 chr1:116963153-116963233 0.0013 45_[+2]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMTGRG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAMTGRG width=8 seqs=96 chr7:102624238-102624318 ( 11) AAACTGGG 1 chr20:3776514-3776594 ( 19) AAAATGGG 1 chr6:43902522-43902602 ( 52) AAACTGAG 1 chr16:85359891-85359971 ( 62) AAAATGGG 1 chr11:75255078-75255158 ( 67) AAAATGGG 1 chr16:85362814-85362894 ( 39) AAAATGGG 1 chr1:51985238-51985318 ( 41) AAAATGGG 1 chr4:119606109-119606189 ( 13) AAACTGAG 1 chr19:45199181-45199261 ( 63) AAAATGGG 1 chr12:123921697-12392177 ( 55) AAAATGGG 1 chr16:23568349-23568429 ( 40) AAAATGGG 1 chr6:43879883-43879963 ( 37) AAACTGAG 1 chr1:54355110-54355190 ( 31) AAAATGGG 1 chr22:25201830-25201910 ( 40) AAACTGAG 1 chr5:176790703-176790783 ( 35) AAACTGAG 1 chr19:11485003-11485083 ( 23) AAACTGAG 1 chr19:3434715-3434795 ( 28) AAAATGGG 1 chr6:111580989-111581069 ( 59) AAAATGGG 1 chr11:65342933-65343013 ( 14) AAACTGAG 1 chr7:73081791-73081871 ( 15) AAACTGAG 1 chr3:14446463-14446543 ( 49) AAACTGAG 1 chr1:41267794-41267874 ( 29) AAACTGAG 1 chr5:176924922-176925002 ( 40) AAAATGGG 1 chr19:10196517-10196597 ( 50) AAACTGAG 1 chr15:55611905-55611985 ( 57) AAAATGGG 1 chr19:14116335-14116415 ( 39) AAACTGAG 1 chr22:19961931-19962011 ( 26) AAACTGAG 1 chr1:38991169-38991249 ( 56) AAAATGGG 1 chr3:53290309-53290389 ( 57) AAACTGAG 1 chr19:45945815-45945895 ( 17) AAACTGAG 1 chr1:224031723-224031803 ( 40) AAACTGAG 1 chr19:3627374-3627454 ( 55) AAACTGAG 1 chr6:158403786-158403866 ( 39) AAACTGAG 1 chr20:32891396-32891476 ( 71) AAAATGGG 1 chr1:16471288-16471368 ( 65) AAAATGGG 1 chr19:13959054-13959134 ( 55) AAAATGGG 1 chr19:54605758-54605838 ( 32) AAAATGGG 1 chr1:26404148-26404228 ( 30) AAACTGAG 1 chr18:987637-987717 ( 69) AAAATGAG 1 chr6:35889146-35889226 ( 37) CAACTGGG 1 chr12:1281031-1281111 ( 9) CAACTGGG 1 chr12:122250270-12225035 ( 41) CAAATGGG 1 chr1:212732608-212732688 ( 21) CAACTGAG 1 chr19:17716069-17716149 ( 44) CAAATGGG 1 chr16:85562550-85562630 ( 40) CAAATGGG 1 chr10:72431672-72431752 ( 2) CAACTGAG 1 chr9:97519518-97519598 ( 21) CAACTGAG 1 chr19:13049016-13049096 ( 5) AAGCTGAG 1 chr20:55989943-55990023 ( 48) AAGCTGAG 1 chr11:67806828-67806908 ( 46) AAGCTGAG 1 chr22:31460141-31460221 ( 22) GAACTGGG 1 chr17:76142703-76142783 ( 54) GAAATGGG 1 chr4:8549488-8549568 ( 73) GAAATGGG 1 chr11:66313946-66314026 ( 33) GAAATGGG 1 chr12:123002511-12300259 ( 50) CAGCTGGG 1 chr17:40713698-40713778 ( 32) GAAATGGG 1 chr19:13905703-13905783 ( 66) CAGCTGGG 1 chr9:135820753-135820833 ( 69) GAAATGGG 1 chr1:245126907-245126987 ( 51) CAGATGGG 1 chr16:11707850-11707930 ( 71) CAGCTGAG 1 chr1:31359717-31359797 ( 4) CAGATGGG 1 chr1:39634308-39634388 ( 20) CAGCTGAG 1 chr11:77899460-77899540 ( 41) CAGATGGG 1 chr19:10728251-10728331 ( 1) CAGCTGAG 1 chr9:127534148-127534228 ( 42) CAGATGGG 1 chr1:12539560-12539640 ( 46) CAGATGGG 1 chr22:23270335-23270415 ( 14) CAGATGAG 1 chr10:73078759-73078839 ( 63) AGACTGGG 1 chr1:26865123-26865203 ( 23) CAGATGAG 1 chr6:138131788-138131868 ( 18) CAGATGAG 1 chrX:49091648-49091728 ( 20) CAGATGAG 1 chr20:634389-634469 ( 50) AGACTGAG 1 chr20:31162227-31162307 ( 12) AGAATGGG 1 chr3:5061494-5061574 ( 62) AGAATGGG 1 chr9:96830687-96830767 ( 50) AGACTGAG 1 chr19:42387916-42387996 ( 40) AGACTGAG 1 chr1:229485297-229485377 ( 34) AAATTGAG 1 chr5:81652674-81652754 ( 39) AAATTGAG 1 chr17:64503397-64503477 ( 2) AAATTGAG 1 chr15:74907324-74907404 ( 26) AAAGTGGG 1 chr5:148832091-148832171 ( 19) GAGCTGGG 1 chr6:27204222-27204302 ( 22) AAAGTGAG 1 chr11:3465704-3465784 ( 12) AAAGTGAG 1 chr1:155829364-155829444 ( 17) GAGCTGAG 1 chr22:26880264-26880344 ( 57) GAGATGGG 1 chr3:46441797-46441877 ( 48) AGGCTGGG 1 chr21:45277514-45277594 ( 25) AGGCTGAG 1 chr12:31804060-31804140 ( 28) AAACTGGA 1 chr6:43707033-43707113 ( 30) AAAATGGA 1 chr17:25681776-25681856 ( 55) AAAATGGA 1 chr19:3035989-3036069 ( 53) AAACTGAA 1 chr11:118444114-11844419 ( 7) AGGATGAG 1 chr1:19986452-19986532 ( 21) CAATTGAG 1 chr1:111019935-111020015 ( 62) AAAATGTG 1 chr7:134278850-134278930 ( 52) TAACTGGG 1 chr1:116963153-116963233 ( 46) AAACTCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMTGRG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.01253 E= 3.2e-039 136 -1 -135 -466 182 -1323 -135 -1323 157 -1323 0 -1323 81 99 -294 -266 -1323 -1323 -1323 192 -1323 -453 205 -1323 94 -1323 106 -466 -262 -1323 200 -1323 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMTGRG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 96 E= 3.2e-039 0.656250 0.239583 0.093750 0.010417 0.906250 0.000000 0.093750 0.000000 0.760417 0.000000 0.239583 0.000000 0.447917 0.479167 0.031250 0.041667 0.000000 0.000000 0.000000 1.000000 0.000000 0.010417 0.989583 0.000000 0.489583 0.000000 0.500000 0.010417 0.041667 0.000000 0.958333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMTGRG MEME-2 regular expression -------------------------------------------------------------------------------- [AC]A[AG][CA]TG[GA]G -------------------------------------------------------------------------------- Time 8.62 secs. ******************************************************************************** ******************************************************************************** MOTIF CTCATCTG MEME-3 width = 8 sites = 37 llr = 330 E-value = 9.1e-014 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTCATCTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::1a:::1 pos.-specific C 916:1a:1 probability G :::::::8 matrix T 193:9:a: bits 2.1 * * 1.9 * ** 1.6 * **** 1.4 ** **** Relative 1.2 ** ***** Entropy 1.0 ** ***** (12.9 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTCATCTG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCATCTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:43707033-43707113 21 1.56e-05 cctcagtttt ctcatctg taaaatggat chr16:85359891-85359971 53 1.56e-05 cctcagtgaa ctcatctg taaaatgggg chr19:45199181-45199261 7 1.56e-05 ATAAGA CTCATCTG CTCCAATCTT chr15:74907324-74907404 17 1.56e-05 cctcagtttt ctcatctg gaaagtgggg chr1:54355110-54355190 22 1.56e-05 cctcagtttc ctcatctg taaaatgggt chr11:33979006-33979086 44 1.56e-05 cctcagtttc ctcatctg tgcaatgggg chr19:3184251-3184331 70 1.56e-05 tctttcttca ctcatctg ctc chr1:205720047-205720127 66 1.56e-05 cctcagtttt ctcatctg taaaatg chr1:38991169-38991249 47 1.56e-05 cctcagcttc ctcatctg taaaatgggc chr17:56415998-56416078 49 1.56e-05 actcagtttt ctcatctg tgaaagggga chr20:32891396-32891476 62 1.56e-05 cctcaatttc ctcatctg taaaatgggc chr1:16471288-16471368 56 1.56e-05 cctcagtttc ctcatctg taaaatgggg chr22:26880264-26880344 48 1.56e-05 cctcagtttt ctcatctg tgagatgggg chr1:111019935-111020015 53 3.27e-05 gttctatttc cttatctg taaaatgtga chr1:23811379-23811459 37 3.27e-05 cctcagtttc cttatctg tacaatggga chr11:73727494-73727574 48 3.27e-05 CCTAGGGGGC CTTATCTG CAAGGCCCAG chr2:152991150-152991230 54 3.27e-05 cctcagtgtc cttatctg taagacaggg chr19:56213886-56213966 18 3.27e-05 gcccgagttg cttatctg tgttttacag chr19:3374449-3374529 6 3.27e-05 TGAGG CTTATCTG AGGTGATCTG chr12:4430028-4430108 72 3.27e-05 CGCCGGCTTC CTTATCTG C chr16:67523114-67523194 39 3.27e-05 gccttgctcc cttatctg tgcagctgca chr19:9945439-9945519 19 4.84e-05 TACTTAGGTG CTCATCTC CAAGGCAACT chr17:76142703-76142783 45 6.28e-05 tcactactta cccatctg cgaaatgggc chr1:25869757-25869837 46 6.28e-05 cctcagtctc cccatctg taaaatgGTC chr10:97321516-97321596 37 6.28e-05 cctcagttta cccatctg taaaatggca chr16:85362814-85362894 30 7.98e-05 cctcagtttg ttcatctg taaaatgggg chr1:39634308-39634388 70 7.98e-05 cctcagtttt ttcatctg taa chr17:25681776-25681856 46 7.98e-05 ctcaggcttc ttcatctg taaaatggac chr16:28858152-28858232 72 9.65e-05 actttgtttt ctaatctg t chr6:111580989-111581069 26 9.65e-05 ggcgcgttac ctaatctg actgggcctc chr4:8549488-8549568 64 1.11e-04 cctctatttc ctcacctg tgaaatggg chr1:155036936-155037016 49 1.11e-04 cctcatttat ctcacctg tataatgggc chr6:16056808-16056888 70 1.27e-04 cctcagtttg ctcatcta taa chr11:75255078-75255158 58 1.27e-04 acttagtctt ctcatcta taaaatgggg chr1:245126907-245126987 36 1.45e-04 GACTCATCtt cttatctc cattttacag chr20:47654647-47654727 51 1.45e-04 AGGTTAACCT CTTATCTC TTGTCCCTCC chr4:153494092-153494172 23 1.45e-04 AAAACTCTTC CTTATCTC CATGATTCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCATCTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:43707033-43707113 1.6e-05 20_[+3]_52 chr16:85359891-85359971 1.6e-05 52_[+3]_20 chr19:45199181-45199261 1.6e-05 6_[+3]_66 chr15:74907324-74907404 1.6e-05 16_[+3]_56 chr1:54355110-54355190 1.6e-05 21_[+3]_51 chr11:33979006-33979086 1.6e-05 43_[+3]_29 chr19:3184251-3184331 1.6e-05 69_[+3]_3 chr1:205720047-205720127 1.6e-05 65_[+3]_7 chr1:38991169-38991249 1.6e-05 46_[+3]_26 chr17:56415998-56416078 1.6e-05 48_[+3]_24 chr20:32891396-32891476 1.6e-05 61_[+3]_11 chr1:16471288-16471368 1.6e-05 55_[+3]_17 chr22:26880264-26880344 1.6e-05 47_[+3]_25 chr1:111019935-111020015 3.3e-05 52_[+3]_20 chr1:23811379-23811459 3.3e-05 36_[+3]_36 chr11:73727494-73727574 3.3e-05 47_[+3]_25 chr2:152991150-152991230 3.3e-05 53_[+3]_19 chr19:56213886-56213966 3.3e-05 17_[+3]_55 chr19:3374449-3374529 3.3e-05 5_[+3]_67 chr12:4430028-4430108 3.3e-05 71_[+3]_1 chr16:67523114-67523194 3.3e-05 38_[+3]_34 chr19:9945439-9945519 4.8e-05 18_[+3]_54 chr17:76142703-76142783 6.3e-05 44_[+3]_28 chr1:25869757-25869837 6.3e-05 45_[+3]_27 chr10:97321516-97321596 6.3e-05 36_[+3]_36 chr16:85362814-85362894 8e-05 29_[+3]_43 chr1:39634308-39634388 8e-05 69_[+3]_3 chr17:25681776-25681856 8e-05 45_[+3]_27 chr16:28858152-28858232 9.6e-05 71_[+3]_1 chr6:111580989-111581069 9.6e-05 25_[+3]_47 chr4:8549488-8549568 0.00011 63_[+3]_9 chr1:155036936-155037016 0.00011 48_[+3]_24 chr6:16056808-16056888 0.00013 69_[+3]_3 chr11:75255078-75255158 0.00013 57_[+3]_15 chr1:245126907-245126987 0.00014 35_[+3]_37 chr20:47654647-47654727 0.00014 50_[+3]_22 chr4:153494092-153494172 0.00014 22_[+3]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCATCTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTCATCTG width=8 seqs=37 chr6:43707033-43707113 ( 21) CTCATCTG 1 chr16:85359891-85359971 ( 53) CTCATCTG 1 chr19:45199181-45199261 ( 7) CTCATCTG 1 chr15:74907324-74907404 ( 17) CTCATCTG 1 chr1:54355110-54355190 ( 22) CTCATCTG 1 chr11:33979006-33979086 ( 44) CTCATCTG 1 chr19:3184251-3184331 ( 70) CTCATCTG 1 chr1:205720047-205720127 ( 66) CTCATCTG 1 chr1:38991169-38991249 ( 47) CTCATCTG 1 chr17:56415998-56416078 ( 49) CTCATCTG 1 chr20:32891396-32891476 ( 62) CTCATCTG 1 chr1:16471288-16471368 ( 56) CTCATCTG 1 chr22:26880264-26880344 ( 48) CTCATCTG 1 chr1:111019935-111020015 ( 53) CTTATCTG 1 chr1:23811379-23811459 ( 37) CTTATCTG 1 chr11:73727494-73727574 ( 48) CTTATCTG 1 chr2:152991150-152991230 ( 54) CTTATCTG 1 chr19:56213886-56213966 ( 18) CTTATCTG 1 chr19:3374449-3374529 ( 6) CTTATCTG 1 chr12:4430028-4430108 ( 72) CTTATCTG 1 chr16:67523114-67523194 ( 39) CTTATCTG 1 chr19:9945439-9945519 ( 19) CTCATCTC 1 chr17:76142703-76142783 ( 45) CCCATCTG 1 chr1:25869757-25869837 ( 46) CCCATCTG 1 chr10:97321516-97321596 ( 37) CCCATCTG 1 chr16:85362814-85362894 ( 30) TTCATCTG 1 chr1:39634308-39634388 ( 70) TTCATCTG 1 chr17:25681776-25681856 ( 46) TTCATCTG 1 chr16:28858152-28858232 ( 72) CTAATCTG 1 chr6:111580989-111581069 ( 26) CTAATCTG 1 chr4:8549488-8549568 ( 64) CTCACCTG 1 chr1:155036936-155037016 ( 49) CTCACCTG 1 chr6:16056808-16056888 ( 70) CTCATCTA 1 chr11:75255078-75255158 ( 58) CTCATCTA 1 chr1:245126907-245126987 ( 36) CTTATCTC 1 chr20:47654647-47654727 ( 51) CTTATCTC 1 chr4:153494092-153494172 ( 23) CTTATCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCATCTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.81773 E= 9.1e-014 -1185 193 -1185 -170 -1185 -157 -1185 180 -224 143 -1185 17 197 -1185 -1185 -1185 -1185 -216 -1185 184 -1185 205 -1185 -1185 -1185 -1185 -1185 192 -224 -116 181 -1185 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCATCTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 37 E= 9.1e-014 0.000000 0.918919 0.000000 0.081081 0.000000 0.081081 0.000000 0.918919 0.054054 0.648649 0.000000 0.297297 1.000000 0.000000 0.000000 0.000000 0.000000 0.054054 0.000000 0.945946 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.054054 0.108108 0.837838 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCATCTG MEME-3 regular expression -------------------------------------------------------------------------------- CT[CT]ATCTG -------------------------------------------------------------------------------- Time 12.12 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGAKRRG MEME-4 width = 8 sites = 38 llr = 314 E-value = 5.5e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGAKRRG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a:a:633 pos.-specific C a:::2::: probability G ::a:4477 matrix T ::::4::: bits 2.1 **** 1.9 **** 1.6 **** 1.4 **** Relative 1.2 **** * Entropy 1.0 **** *** (11.9 bits) 0.8 **** *** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAGATAGG consensus GGAA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGAKRRG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:3035989-3036069 44 1.47e-05 ccctatttca cagatagg taaactgaag chr1:245126907-245126987 72 2.81e-05 actgatgtta cagagagg a chr8:131027659-131027739 22 2.81e-05 ccctaagact cagagagg gtaagcgact chr3:5236543-5236623 73 2.81e-05 ACCTGAATCT CAGAGAGG chr1:31359717-31359797 24 2.81e-05 aactaaaatt cagagagg tgaagcaact chr5:176790703-176790783 46 2.81e-05 aactgaggca cagagagg ttaagtacct chr15:75918960-75919040 18 2.81e-05 cactgaagct cagagagg ttaagtaatt chr7:2442720-2442800 20 2.81e-05 gcgacaacct cagagagg ttaagtcact chr22:22652921-22653001 61 2.81e-05 AAAGAAAGCG CAGAGAGG GGCACGgctg chr19:3627374-3627454 66 2.81e-05 aactgaggct cagagagg gaaagtc chr19:13905703-13905783 35 2.81e-05 ACCCGGTgcc cagagagg ttgagtgagt chr19:13049016-13049096 70 4.19e-05 TTTAAACGCC CAGATGGG CAA chr20:55989943-55990023 33 4.19e-05 gcccatttca cagatggg aaaaccaaag chr11:67806828-67806908 37 4.19e-05 Acccattcta cagatggg gaagctgaga chr19:10196517-10196597 41 5.45e-05 ccccatttca cagagggg taaactgagg chr21:40467183-40467263 27 7.02e-05 AGTGTGGGTG CAGATAAG ACAGTAATTT chr12:93571628-93571708 62 7.02e-05 cagtaaaaca cagataag acagctcagg chr4:39559988-39560068 62 7.02e-05 taagcctgga cagataag cagccagtaa chr10:1096206-1096286 56 7.02e-05 tggcttCACA CAGATAAG AAAATCTGGC chr7:45027704-45027784 68 7.02e-05 ccctaacaga cagataag gcaga chr19:42387916-42387996 53 8.45e-05 ctgaggtcta cagagaag tcattacttt chr1:51985238-51985318 2 9.79e-05 t cagacagg ccacctacct chr6:136572716-136572796 53 9.79e-05 AAACAGCAAA CAGACAGG GCCAGAATGA chr6:43879883-43879963 28 1.43e-04 tcccatttta cagatgag gaaactgagg chr16:47072287-47072367 28 1.43e-04 Atgcgtgact cagagaga ttgcataact chr6:158403786-158403866 30 1.43e-04 ccccattttg cagatgag caaactgagg chr1:26404148-26404228 21 1.43e-04 ccccatttta cagatgag aaaactgagt chr16:11707850-11707930 62 1.69e-04 GCCCATTGTA CAGACGGG GCAGCTGAGG chr10:21455574-21455654 32 1.83e-04 gcccatttga cagatgga gaaactgatg chr5:81652674-81652754 30 1.83e-04 tcccatttta cagatgga aaaattgaga chr19:14116335-14116415 51 1.83e-04 actgaggcct cagatgga caggcacttg chr11:64612699-64612779 30 1.83e-04 gcccatttgg cagatgga cacactgagg chr12:133712474-13371255 1 2.11e-04 . CAGACAAG TATGACAGAC chr2:42149440-42149520 17 2.58e-04 GCTTGGCTAT CAGACAGA CATGCATGTG chr12:123002511-12300259 24 2.58e-04 TTTTCAGTGC CAGACAGA TTAAGTGGTT chr10:97051230-97051310 42 2.87e-04 tcccatttta cagatgaa gtaactgagt chr22:19961931-19962011 17 3.01e-04 tcccatttca cagaggaa caaactgagg chr5:138524356-138524436 14 3.01e-04 GCATACAAAT CAGAGGAA AGCAGTGACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGAKRRG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:3035989-3036069 1.5e-05 43_[+4]_29 chr1:245126907-245126987 2.8e-05 71_[+4]_1 chr8:131027659-131027739 2.8e-05 21_[+4]_51 chr3:5236543-5236623 2.8e-05 72_[+4] chr1:31359717-31359797 2.8e-05 23_[+4]_49 chr5:176790703-176790783 2.8e-05 45_[+4]_27 chr15:75918960-75919040 2.8e-05 17_[+4]_55 chr7:2442720-2442800 2.8e-05 19_[+4]_53 chr22:22652921-22653001 2.8e-05 60_[+4]_12 chr19:3627374-3627454 2.8e-05 65_[+4]_7 chr19:13905703-13905783 2.8e-05 34_[+4]_38 chr19:13049016-13049096 4.2e-05 69_[+4]_3 chr20:55989943-55990023 4.2e-05 32_[+4]_40 chr11:67806828-67806908 4.2e-05 36_[+4]_36 chr19:10196517-10196597 5.4e-05 40_[+4]_32 chr21:40467183-40467263 7e-05 26_[+4]_46 chr12:93571628-93571708 7e-05 61_[+4]_11 chr4:39559988-39560068 7e-05 61_[+4]_11 chr10:1096206-1096286 7e-05 55_[+4]_17 chr7:45027704-45027784 7e-05 67_[+4]_5 chr19:42387916-42387996 8.4e-05 52_[+4]_20 chr1:51985238-51985318 9.8e-05 1_[+4]_71 chr6:136572716-136572796 9.8e-05 52_[+4]_20 chr6:43879883-43879963 0.00014 27_[+4]_45 chr16:47072287-47072367 0.00014 27_[+4]_45 chr6:158403786-158403866 0.00014 29_[+4]_43 chr1:26404148-26404228 0.00014 20_[+4]_52 chr16:11707850-11707930 0.00017 61_[+4]_11 chr10:21455574-21455654 0.00018 31_[+4]_41 chr5:81652674-81652754 0.00018 29_[+4]_43 chr19:14116335-14116415 0.00018 50_[+4]_22 chr11:64612699-64612779 0.00018 29_[+4]_43 chr12:133712474-13371255 0.00021 [+4]_72 chr2:42149440-42149520 0.00026 16_[+4]_56 chr12:123002511-12300259 0.00026 23_[+4]_49 chr10:97051230-97051310 0.00029 41_[+4]_31 chr22:19961931-19962011 0.0003 16_[+4]_56 chr5:138524356-138524436 0.0003 13_[+4]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGAKRRG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGAKRRG width=8 seqs=38 chr19:3035989-3036069 ( 44) CAGATAGG 1 chr1:245126907-245126987 ( 72) CAGAGAGG 1 chr8:131027659-131027739 ( 22) CAGAGAGG 1 chr3:5236543-5236623 ( 73) CAGAGAGG 1 chr1:31359717-31359797 ( 24) CAGAGAGG 1 chr5:176790703-176790783 ( 46) CAGAGAGG 1 chr15:75918960-75919040 ( 18) CAGAGAGG 1 chr7:2442720-2442800 ( 20) CAGAGAGG 1 chr22:22652921-22653001 ( 61) CAGAGAGG 1 chr19:3627374-3627454 ( 66) CAGAGAGG 1 chr19:13905703-13905783 ( 35) CAGAGAGG 1 chr19:13049016-13049096 ( 70) CAGATGGG 1 chr20:55989943-55990023 ( 33) CAGATGGG 1 chr11:67806828-67806908 ( 37) CAGATGGG 1 chr19:10196517-10196597 ( 41) CAGAGGGG 1 chr21:40467183-40467263 ( 27) CAGATAAG 1 chr12:93571628-93571708 ( 62) CAGATAAG 1 chr4:39559988-39560068 ( 62) CAGATAAG 1 chr10:1096206-1096286 ( 56) CAGATAAG 1 chr7:45027704-45027784 ( 68) CAGATAAG 1 chr19:42387916-42387996 ( 53) CAGAGAAG 1 chr1:51985238-51985318 ( 2) CAGACAGG 1 chr6:136572716-136572796 ( 53) CAGACAGG 1 chr6:43879883-43879963 ( 28) CAGATGAG 1 chr16:47072287-47072367 ( 28) CAGAGAGA 1 chr6:158403786-158403866 ( 30) CAGATGAG 1 chr1:26404148-26404228 ( 21) CAGATGAG 1 chr16:11707850-11707930 ( 62) CAGACGGG 1 chr10:21455574-21455654 ( 32) CAGATGGA 1 chr5:81652674-81652754 ( 30) CAGATGGA 1 chr19:14116335-14116415 ( 51) CAGATGGA 1 chr11:64612699-64612779 ( 30) CAGATGGA 1 chr12:133712474-13371255 ( 1) CAGACAAG 1 chr2:42149440-42149520 ( 17) CAGACAGA 1 chr12:123002511-12300259 ( 24) CAGACAGA 1 chr10:97051230-97051310 ( 42) CAGATGAA 1 chr22:19961931-19962011 ( 17) CAGAGGAA 1 chr5:138524356-138524436 ( 14) CAGAGGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGAKRRG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.3471 E= 5.5e-004 -1189 205 -1189 -1189 197 -1189 -1189 -1189 -1189 -1189 206 -1189 197 -1189 -1189 -1189 -1189 -61 72 76 124 -1189 72 -1189 42 -1189 146 -1189 4 -1189 162 -1189 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGAKRRG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 38 E= 5.5e-004 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.157895 0.394737 0.447368 0.605263 0.000000 0.394737 0.000000 0.342105 0.000000 0.657895 0.000000 0.263158 0.000000 0.736842 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGAKRRG MEME-4 regular expression -------------------------------------------------------------------------------- CAGA[TG][AG][GA][GA] -------------------------------------------------------------------------------- Time 15.57 secs. ******************************************************************************** ******************************************************************************** MOTIF AATCWCWG MEME-5 width = 8 sites = 35 llr = 291 E-value = 9.7e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AATCWCWG MEME-5 Description -------------------------------------------------------------------------------- Simplified A a9::5:4: pos.-specific C :::a19:: probability G :11::1:a matrix T ::9:3:6: bits 2.1 * * * 1.9 * * * 1.6 ** * * 1.4 **** * * Relative 1.2 **** * * Entropy 1.0 **** * * (12.0 bits) 0.8 **** *** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AATCACTG consensus T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATCWCWG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:142433766-142433846 59 1.62e-05 CTCAGTTAAA AATCACTG GCTGAAAATG chr2:159595031-159595111 38 1.62e-05 AACCCCTCCC AATCACTG TGATCACCAC chr1:154077006-154077086 36 1.62e-05 tgcattccac aatcactg cactccccca chr17:27046342-27046422 26 1.62e-05 tctgccacca aatcactg tgttattgat chr4:153494092-153494172 47 1.62e-05 TCACCTTTTA AATCACTG CCTCTTCCAG chr13:41255672-41255752 64 3.19e-05 GGCCTCTTGG AATCACAG TTGATAATG chr12:7394172-7394252 43 3.19e-05 TGACCACAAA AATCACAG GAGTGTTGAG chr4:39559988-39560068 26 3.19e-05 ttgcctgaaa aatcacag ctgctgcagc chr17:42084522-42084602 12 3.19e-05 CTTGAATGAA AATCACAG ACAAATCTAT chr6:16056808-16056888 50 4.85e-05 aaaattatgt aatctctg tgcctcagtt chr6:170863012-170863092 43 4.85e-05 tgattctgtc aatctctg tcaatctccc chr1:109757526-109757606 20 4.85e-05 TCTGCCCATA AATCTCTG CCTGTATTAA chr4:128454691-128454771 58 4.85e-05 AAGCAAATAA AATCTCTG TTTCACAGCA chr9:132806038-132806118 10 4.85e-05 GTGATTTCC AATCTCTG AAACCAGTGA chr5:159546895-159546975 30 4.85e-05 GCTTCCCAAG AATCTCTG CGCAGAGATC chr22:26880264-26880344 28 4.85e-05 gacaatttat aatctctg tgcctcagtt chr5:141742540-141742620 56 6.47e-05 GTTCTTGAGA AATCTCAG AAACAGTAAC chr7:102624238-102624318 52 6.47e-05 gattttcagg aatctcag ccctgtggct chr1:111019935-111020015 35 7.99e-05 gactcagttc aatccctg gttctatttc chr6:38764366-38764446 45 7.99e-05 gcattgtgaa aatccctg tcctgttctg chr4:129181214-129181294 40 7.99e-05 gcactgtgaa aatccctg tcctgttctg chr21:45277514-45277594 8 1.11e-04 tgcctgt aatcccag cactttggga chr1:205720047-205720127 9 1.11e-04 tcaggtgg aatcccag gtccactact chr12:4430028-4430108 54 1.11e-04 AACAACCACA AATCAGTG CGCCGGCTTC chr2:120916410-120916490 70 1.11e-04 aaggatacaa aatcagtg tac chr16:75543470-75543550 53 1.26e-04 AAGCTGTGAT AAGCACTG CTTTTTGCAG chr3:5236543-5236623 10 1.41e-04 TGATTGTGA AATCAGAG CTTTTTAAAG chr20:37089060-37089140 33 1.41e-04 actccgaggg aatcagag ccccagtaac chr12:1281031-1281111 53 1.58e-04 GATGTCAATA AATCTGTG CCAATGTGGA chr16:50105144-50105224 34 1.72e-04 GCTGACCTAA AAGCACAG ATGTTTCTTA chr12:26999101-26999181 61 1.72e-04 GCTCCCGGCT AAGCACAG ATGTGGCCTC chr2:43558702-43558782 24 1.72e-04 CTGCTCTCTA AAGCACAG CAGCTTTCCC chr16:30560858-30560938 39 2.19e-04 tacaggcatg agtcactg cctggcctga chr9:114364090-114364170 66 2.49e-04 GATTAAGTTA AATCACGG CTGTTAC chr5:176924922-176925002 11 3.08e-04 GGGACATAGT AGtctctg aaccttagtt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATCWCWG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:142433766-142433846 1.6e-05 58_[+5]_14 chr2:159595031-159595111 1.6e-05 37_[+5]_35 chr1:154077006-154077086 1.6e-05 35_[+5]_37 chr17:27046342-27046422 1.6e-05 25_[+5]_47 chr4:153494092-153494172 1.6e-05 46_[+5]_26 chr13:41255672-41255752 3.2e-05 63_[+5]_9 chr12:7394172-7394252 3.2e-05 42_[+5]_30 chr4:39559988-39560068 3.2e-05 25_[+5]_47 chr17:42084522-42084602 3.2e-05 11_[+5]_61 chr6:16056808-16056888 4.9e-05 49_[+5]_23 chr6:170863012-170863092 4.9e-05 42_[+5]_30 chr1:109757526-109757606 4.9e-05 19_[+5]_53 chr4:128454691-128454771 4.9e-05 57_[+5]_15 chr9:132806038-132806118 4.9e-05 9_[+5]_63 chr5:159546895-159546975 4.9e-05 29_[+5]_43 chr22:26880264-26880344 4.9e-05 27_[+5]_45 chr5:141742540-141742620 6.5e-05 55_[+5]_17 chr7:102624238-102624318 6.5e-05 51_[+5]_21 chr1:111019935-111020015 8e-05 34_[+5]_38 chr6:38764366-38764446 8e-05 44_[+5]_28 chr4:129181214-129181294 8e-05 39_[+5]_33 chr21:45277514-45277594 0.00011 7_[+5]_65 chr1:205720047-205720127 0.00011 8_[+5]_64 chr12:4430028-4430108 0.00011 53_[+5]_19 chr2:120916410-120916490 0.00011 69_[+5]_3 chr16:75543470-75543550 0.00013 52_[+5]_20 chr3:5236543-5236623 0.00014 9_[+5]_63 chr20:37089060-37089140 0.00014 32_[+5]_40 chr12:1281031-1281111 0.00016 52_[+5]_20 chr16:50105144-50105224 0.00017 33_[+5]_39 chr12:26999101-26999181 0.00017 60_[+5]_12 chr2:43558702-43558782 0.00017 23_[+5]_49 chr16:30560858-30560938 0.00022 38_[+5]_34 chr9:114364090-114364170 0.00025 65_[+5]_7 chr5:176924922-176925002 0.00031 10_[+5]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATCWCWG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AATCWCWG width=8 seqs=35 chr6:142433766-142433846 ( 59) AATCACTG 1 chr2:159595031-159595111 ( 38) AATCACTG 1 chr1:154077006-154077086 ( 36) AATCACTG 1 chr17:27046342-27046422 ( 26) AATCACTG 1 chr4:153494092-153494172 ( 47) AATCACTG 1 chr13:41255672-41255752 ( 64) AATCACAG 1 chr12:7394172-7394252 ( 43) AATCACAG 1 chr4:39559988-39560068 ( 26) AATCACAG 1 chr17:42084522-42084602 ( 12) AATCACAG 1 chr6:16056808-16056888 ( 50) AATCTCTG 1 chr6:170863012-170863092 ( 43) AATCTCTG 1 chr1:109757526-109757606 ( 20) AATCTCTG 1 chr4:128454691-128454771 ( 58) AATCTCTG 1 chr9:132806038-132806118 ( 10) AATCTCTG 1 chr5:159546895-159546975 ( 30) AATCTCTG 1 chr22:26880264-26880344 ( 28) AATCTCTG 1 chr5:141742540-141742620 ( 56) AATCTCAG 1 chr7:102624238-102624318 ( 52) AATCTCAG 1 chr1:111019935-111020015 ( 35) AATCCCTG 1 chr6:38764366-38764446 ( 45) AATCCCTG 1 chr4:129181214-129181294 ( 40) AATCCCTG 1 chr21:45277514-45277594 ( 8) AATCCCAG 1 chr1:205720047-205720127 ( 9) AATCCCAG 1 chr12:4430028-4430108 ( 54) AATCAGTG 1 chr2:120916410-120916490 ( 70) AATCAGTG 1 chr16:75543470-75543550 ( 53) AAGCACTG 1 chr3:5236543-5236623 ( 10) AATCAGAG 1 chr20:37089060-37089140 ( 33) AATCAGAG 1 chr12:1281031-1281111 ( 53) AATCTGTG 1 chr16:50105144-50105224 ( 34) AAGCACAG 1 chr12:26999101-26999181 ( 61) AAGCACAG 1 chr2:43558702-43558782 ( 24) AAGCACAG 1 chr16:30560858-30560938 ( 39) AGTCACTG 1 chr9:114364090-114364170 ( 66) AATCACGG 1 chr5:176924922-176925002 ( 11) AGTCTCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATCWCWG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.12623 E= 9.7e-003 197 -1177 -1177 -1177 188 -1177 -207 -1177 -1177 -1177 -107 175 -1177 205 -1177 -1177 109 -75 -1177 25 -1177 183 -75 -1177 54 -1177 -306 119 -1177 -1177 206 -1177 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATCWCWG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 9.7e-003 1.000000 0.000000 0.000000 0.000000 0.942857 0.000000 0.057143 0.000000 0.000000 0.000000 0.114286 0.885714 0.000000 1.000000 0.000000 0.000000 0.542857 0.142857 0.000000 0.314286 0.000000 0.857143 0.142857 0.000000 0.371429 0.000000 0.028571 0.600000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATCWCWG MEME-5 regular expression -------------------------------------------------------------------------------- AATC[AT]C[TA]G -------------------------------------------------------------------------------- Time 18.97 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:120916410-120916490 4.08e-03 80 chr7:45027704-45027784 2.95e-02 67_[+4(7.02e-05)]_5 chr11:3465704-3465784 5.12e-02 80 chr6:161827825-161827905 3.55e-01 80 chr20:37089060-37089140 8.72e-02 80 chr17:42084522-42084602 3.32e-03 11_[+5(3.19e-05)]_61 chr17:62530047-62530127 4.70e-01 80 chr22:26880264-26880344 3.03e-07 27_[+5(4.85e-05)]_3_[+1(1.71e-05)]_\ 1_[+3(1.56e-05)]_25 chr10:1096206-1096286 6.04e-02 55_[+4(7.02e-05)]_17 chr4:39559988-39560068 2.83e-03 25_[+5(3.19e-05)]_14_[+4(7.02e-05)]_\ 6_[+4(7.02e-05)]_11 chr2:111920530-111920610 4.10e-01 80 chr1:167833331-167833411 6.60e-01 80 chr12:31910153-31910233 1.93e-01 80 chr1:155829364-155829444 3.21e-01 80 chr6:105123205-105123285 4.26e-02 80 chr9:373837-373917 8.37e-01 80 chr4:153494092-153494172 4.80e-04 46_[+5(1.62e-05)]_26 chr5:159546895-159546975 1.32e-01 29_[+5(4.85e-05)]_43 chr17:27046342-27046422 1.63e-03 25_[+5(1.62e-05)]_31_[+1(9.99e-05)]_\ 8 chr1:154077006-154077086 3.92e-03 35_[+5(1.62e-05)]_37 chr6:27204222-27204302 1.66e-01 80 chr9:132806038-132806118 1.53e-02 9_[+5(4.85e-05)]_63 chr16:67523114-67523194 3.43e-02 38_[+3(3.27e-05)]_34 chr9:135820753-135820833 1.87e-03 50_[+1(1.71e-05)]_22 chr12:1281031-1281111 4.80e-03 8_[+2(7.65e-05)]_64 chr1:26404148-26404228 1.65e-04 11_[+1(6.86e-05)]_10_[+2(4.60e-05)]_\ 43 chr10:97321516-97321596 2.08e-03 27_[+1(1.71e-05)]_1_[+3(6.28e-05)]_\ 36 chr7:129595329-129595409 2.38e-01 80 chr11:96037279-96037359 5.53e-02 80 chr1:228352359-228352439 3.71e-02 80 chr19:54605758-54605838 7.35e-04 13_[+1(1.71e-05)]_10_[+2(4.60e-05)]_\ 18_[+2(4.60e-05)]_15 chr4:48700513-48700593 6.27e-01 80 chr19:13959054-13959134 5.88e-04 36_[+1(1.71e-05)]_10_[+2(4.60e-05)]_\ 18 chr11:44564053-44564133 9.47e-01 80 chr1:16471288-16471368 8.27e-06 46_[+1(1.71e-05)]_1_[+3(1.56e-05)]_\ 1_[+2(4.60e-05)]_8 chr17:74449422-74449502 2.65e-01 80 chr20:32891396-32891476 2.45e-05 61_[+3(1.56e-05)]_1_[+2(4.60e-05)]_\ 2 chr13:114919144-11491922 7.61e-01 80 chr20:48895857-48895937 2.54e-01 80 chr6:158403786-158403866 1.65e-04 20_[+1(6.86e-05)]_10_[+2(4.60e-05)]_\ 34 chr19:17858100-17858180 2.62e-01 80 chr16:21623413-21623493 1.15e-01 80 chr19:10534178-10534258 6.83e-02 80 chr7:97847753-97847833 7.93e-01 80 chr4:128454691-128454771 1.28e-02 57_[+5(4.85e-05)]_15 chr7:134278850-134278930 1.77e-01 80 chr19:13905703-13905783 7.62e-03 34_[+4(2.81e-05)]_38 chr17:40713698-40713778 1.27e-04 13_[+1(1.71e-05)]_59 chr12:4430028-4430108 9.22e-04 71_[+3(3.27e-05)]_1 chr16:87527021-87527101 1.09e-01 80 chrX:49091648-49091728 8.21e-04 10_[+1(6.86e-05)]_62 chr19:3627374-3627454 6.39e-06 36_[+1(6.86e-05)]_10_[+2(4.60e-05)]_\ 3_[+4(2.81e-05)]_7 chr11:64612699-64612779 1.24e-02 80 chr17:56415998-56416078 4.82e-05 39_[+1(1.71e-05)]_1_[+3(1.56e-05)]_\ 24 chr12:54753706-54753786 3.14e-02 80 chr4:129181214-129181294 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chr9:127534148-127534228 1.26e-03 41_[+4(4.19e-05)]_31 chr19:3184251-3184331 1.88e-02 69_[+3(1.56e-05)]_3 chr19:10728251-10728331 3.74e-02 80 chr11:33979006-33979086 4.09e-04 34_[+1(1.71e-05)]_1_[+3(1.56e-05)]_\ 29 chr19:56213886-56213966 4.14e-03 17_[+3(3.27e-05)]_55 chr8:61705482-61705562 2.24e-01 80 chr16:87811408-87811488 5.58e-01 80 chr20:55989943-55990023 3.70e-05 32_[+4(4.19e-05)]_40 chr16:85562550-85562630 5.85e-02 80 chr3:9994232-9994312 9.91e-02 80 chr10:73078759-73078839 4.08e-02 80 chr17:64503397-64503477 1.97e-01 80 chr2:152991150-152991230 9.26e-04 53_[+3(3.27e-05)]_19 chr19:14896309-14896389 5.84e-01 80 chr11:73727494-73727574 1.06e-02 47_[+3(3.27e-05)]_25 chr9:114364090-114364170 1.39e-01 80 chr17:65852191-65852271 7.14e-01 80 chr17:25681776-25681856 1.45e-02 45_[+3(7.98e-05)]_27 chr19:40791770-40791850 9.76e-02 80 chr21:45277514-45277594 1.42e-02 80 chr11:77899460-77899540 1.41e-04 40_[+4(4.19e-05)]_32 chr1:54355110-54355190 6.50e-06 12_[+1(1.71e-05)]_1_[+3(1.56e-05)]_\ 1_[+2(4.60e-05)]_42 chr1:39634308-39634388 5.95e-05 60_[+1(1.71e-05)]_1_[+3(7.98e-05)]_\ 3 chr9:37968295-37968375 5.18e-02 80 chr1:23811379-23811459 4.58e-04 27_[+1(1.71e-05)]_1_[+3(3.27e-05)]_\ 36 chr19:39616015-39616095 3.77e-01 80 chr16:2844612-2844692 9.47e-01 80 chr12:93571628-93571708 1.27e-02 61_[+4(7.02e-05)]_11 chr5:176852859-176852939 7.05e-02 80 chr1:31359717-31359797 6.12e-03 3_[+4(4.19e-05)]_12_[+4(2.81e-05)]_\ 49 chr16:15149456-15149536 5.49e-01 80 chr21:40467183-40467263 9.15e-02 26_[+4(7.02e-05)]_46 chr19:1040822-1040902 2.76e-01 80 chr6:43879883-43879963 4.95e-05 18_[+1(6.86e-05)]_10_[+2(4.60e-05)]_\ 36 chr22:23270335-23270415 3.24e-04 80 chr3:8899703-8899783 3.22e-01 80 chr16:23568349-23568429 2.28e-03 21_[+1(1.71e-05)]_10_[+2(4.60e-05)]_\ 33 chr7:150484822-150484902 2.75e-01 80 chr16:28858152-28858232 6.46e-02 71_[+3(9.65e-05)]_1 chr1:120930416-120930496 9.16e-01 80 chr5:81652674-81652754 1.51e-03 20_[+1(6.86e-05)]_52 chr15:74907324-74907404 9.13e-05 7_[+1(1.71e-05)]_1_[+3(1.56e-05)]_\ 56 chr3:5061494-5061574 7.44e-05 43_[+1(1.71e-05)]_29 chr1:109757526-109757606 2.85e-02 19_[+5(4.85e-05)]_53 chr6:170863012-170863092 2.58e-02 42_[+5(4.85e-05)]_30 chr19:17716069-17716149 2.07e-04 25_[+1(1.71e-05)]_47 chr1:28851648-28851728 5.69e-01 80 chr12:123921697-12392177 1.27e-03 36_[+1(9.99e-05)]_10_[+2(4.60e-05)]_\ 18 chr16:75543470-75543550 1.17e-01 80 chr2:43558702-43558782 2.62e-02 80 chr1:212732608-212732688 3.40e-02 80 chr6:31739254-31739334 3.45e-02 18_[+1(6.86e-05)]_54 chr19:18668362-18668442 5.90e-01 80 chr20:31162227-31162307 1.29e-02 80 chr6:38764366-38764446 1.08e-01 44_[+5(7.99e-05)]_28 chr19:2974624-2974704 6.55e-01 80 chr5:148832091-148832171 3.06e-02 80 chr1:151961009-151961089 3.63e-02 80 chr19:45199181-45199261 1.26e-05 6_[+3(1.56e-05)]_30_[+1(1.71e-05)]_\ 10_[+2(4.60e-05)]_10 chr3:5236543-5236623 1.01e-03 72_[+4(2.81e-05)] chr19:18174540-18174620 1.64e-01 80 chr18:987637-987717 1.00e-02 68_[+2(6.27e-05)]_4 chr3:12909812-12909892 4.76e-01 80 chr16:11707850-11707930 1.97e-03 80 chr22:21448110-21448190 3.87e-02 80 chr12:26999101-26999181 1.24e-02 80 chr10:21455574-21455654 1.66e-02 80 chr19:45829823-45829903 4.87e-02 80 chr12:122250270-12225035 1.72e-05 22_[+1(1.71e-05)]_50 chr19:18451123-18451203 2.68e-01 80 chr3:58457134-58457214 1.18e-01 80 chr5:141742540-141742620 1.70e-01 55_[+5(6.47e-05)]_17 chr19:14253551-14253631 4.51e-01 80 chr4:119606109-119606189 1.65e-02 12_[+2(4.60e-05)]_60 chr7:1500456-1500536 6.30e-01 80 chr20:44600183-44600263 7.58e-03 [+1(6.86e-05)]_72 chr11:74919733-74919813 7.28e-01 80 chr22:31460141-31460221 1.20e-01 80 chr17:76142703-76142783 3.38e-03 44_[+3(6.28e-05)]_28 chr1:51985238-51985318 5.13e-05 1_[+4(9.79e-05)]_31_[+2(4.60e-05)]_\ 32 chr15:78730117-78730197 7.02e-01 80 chr6:30910574-30910654 2.79e-01 80 chr6:35889146-35889226 4.54e-04 36_[+2(7.65e-05)]_6_[+1(1.71e-05)]_\ 22 chr8:131027659-131027739 2.50e-02 21_[+4(2.81e-05)]_51 chr19:1400697-1400777 4.69e-02 38_[+1(6.86e-05)]_34 chr11:74204027-74204107 4.16e-01 80 chr16:85362814-85362894 7.36e-05 20_[+1(1.71e-05)]_1_[+3(7.98e-05)]_\ 1_[+2(4.60e-05)]_34 chr20:634389-634469 4.05e-03 31_[+1(6.86e-05)]_41 chr9:130547159-130547239 7.96e-01 80 chr10:97051230-97051310 2.97e-03 32_[+1(6.86e-05)]_40 chr15:45709910-45709990 6.19e-01 80 chr1:229485297-229485377 1.17e-02 15_[+1(6.86e-05)]_57 chr3:46441797-46441877 1.15e-02 80 chr19:46406312-46406392 7.19e-01 80 chr6:106968855-106968935 1.00e-02 63_[+1(9.99e-05)]_9 chr10:80843148-80843228 2.10e-01 80 chr2:42876762-42876842 1.04e-01 80 chr11:75255078-75255158 4.28e-03 66_[+2(4.60e-05)]_6 chr6:16056808-16056888 7.88e-05 49_[+5(4.85e-05)]_3_[+1(1.71e-05)]_\ 12 chr16:85359891-85359971 8.81e-04 52_[+3(1.56e-05)]_1_[+2(4.60e-05)]_\ 11 chr19:4555866-4555946 3.99e-01 80 chr16:3018968-3019048 3.60e-01 80 chr15:62386780-62386860 5.56e-01 80 chr19:13049016-13049096 1.08e-03 69_[+4(4.19e-05)]_3 chr5:175624467-175624547 8.79e-02 80 chr1:223866723-223866803 6.78e-01 80 chr16:50105144-50105224 1.03e-01 80 chr1:245126907-245126987 5.95e-05 50_[+4(4.19e-05)]_13_[+4(2.81e-05)]_\ 1 chr2:42149440-42149520 8.61e-02 80 chr13:41255672-41255752 6.89e-03 63_[+5(3.19e-05)]_9 chr1:111019935-111020015 2.56e-05 26_[+1(9.99e-05)]_[+5(7.99e-05)]_10_\ [+3(3.27e-05)]_20 chr5:148819753-148819833 6.62e-02 80 chr6:43902522-43902602 1.74e-04 33_[+1(6.86e-05)]_10_[+2(4.60e-05)]_\ 21 chr20:3776514-3776594 1.59e-03 18_[+2(4.60e-05)]_54 chr6:43707033-43707113 2.23e-04 11_[+1(1.71e-05)]_1_[+3(1.56e-05)]_\ 52 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n05.farnam.hpc.yale.internal ********************************************************************************