******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/GTF3C2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr19:2702944-2703024 1.0000 80 chr3:50457234-50457314 1.0000 80 chr14:104314155-10431423 1.0000 80 chr1:16826083-16826163 1.0000 80 chr1:145398750-145398830 1.0000 80 chr20:44718057-44718137 1.0000 80 chr5:180644111-180644191 1.0000 80 chr16:50099647-50099727 1.0000 80 chr16:3201327-3201407 1.0000 80 chr19:18549055-18549135 1.0000 80 chr17:73106868-73106948 1.0000 80 chr1:228743487-228743567 1.0000 80 chr6:27241760-27241840 1.0000 80 chr16:25067243-25067323 1.0000 80 chr22:41776296-41776376 1.0000 80 chr7:152290068-152290148 1.0000 80 chr14:58707433-58707513 1.0000 80 chr6:27441811-27441891 1.0000 80 chr2:217363150-217363230 1.0000 80 chr17:77982384-77982464 1.0000 80 chr16:20818693-20818773 1.0000 80 chr2:136287206-136287286 1.0000 80 chr3:45706794-45706874 1.0000 80 chr12:120554049-12055412 1.0000 80 chr21:22370427-22370507 1.0000 80 chr1:76191848-76191928 1.0000 80 chr6:28692773-28692853 1.0000 80 chr20:36531903-36531983 1.0000 80 chr12:112791377-11279145 1.0000 80 chr19:41222504-41222584 1.0000 80 chr15:83877172-83877252 1.0000 80 chr6:26568488-26568568 1.0000 80 chr3:57994185-57994265 1.0000 80 chr1:41445167-41445247 1.0000 80 chr17:36858033-36858113 1.0000 80 chr6:2965082-2965162 1.0000 80 chr6:27173865-27173945 1.0000 80 chr20:48629671-48629751 1.0000 80 chr6:143770969-143771049 1.0000 80 chr17:47929004-47929084 1.0000 80 chr3:139396198-139396278 1.0000 80 chr6:28830714-28830794 1.0000 80 chr19:1788978-1789058 1.0000 80 chr19:921631-921711 1.0000 80 chr2:71558431-71558511 1.0000 80 chr6:27530004-27530084 1.0000 80 chr19:18119046-18119126 1.0000 80 chr9:127595319-127595399 1.0000 80 chr1:35736197-35736277 1.0000 80 chr5:176448753-176448833 1.0000 80 chr6:27242929-27243009 1.0000 80 chr16:14379395-14379475 1.0000 80 chr10:23286198-23286278 1.0000 80 chr11:70243627-70243707 1.0000 80 chr4:128801155-128801235 1.0000 80 chr7:142567959-142568039 1.0000 80 chr5:171881838-171881918 1.0000 80 chr6:26328804-26328884 1.0000 80 chr8:61428913-61428993 1.0000 80 chr6:26319274-26319354 1.0000 80 chr6:28709861-28709941 1.0000 80 chrX:37544862-37544942 1.0000 80 chr19:4968540-4968620 1.0000 80 chr6:28574945-28575025 1.0000 80 chr19:45931720-45931800 1.0000 80 chr17:8089688-8089768 1.0000 80 chrX:1365973-1366053 1.0000 80 chr2:70332708-70332788 1.0000 80 chr20:45829078-45829158 1.0000 80 chr14:50328906-50328986 1.0000 80 chr14:31666410-31666490 1.0000 80 chr6:27661416-27661496 1.0000 80 chr12:102224243-10222432 1.0000 80 chr1:182913523-182913603 1.0000 80 chr6:26311400-26311480 1.0000 80 chr5:55073331-55073411 1.0000 80 chr11:67771686-67771766 1.0000 80 chr1:55452360-55452440 1.0000 80 chr5:140104925-140105005 1.0000 80 chr17:76125858-76125938 1.0000 80 chr6:26312800-26312880 1.0000 80 chr7:150115114-150115194 1.0000 80 chr6:27118038-27118118 1.0000 80 chr22:50624062-50624142 1.0000 80 chr9:132483608-132483688 1.0000 80 chr7:148673874-148673954 1.0000 80 chr11:118933526-11893360 1.0000 80 chr7:54827467-54827547 1.0000 80 chr6:27177654-27177734 1.0000 80 chr6:27471535-27471615 1.0000 80 chr7:148661901-148661981 1.0000 80 chr14:102786063-10278614 1.0000 80 chr12:53399210-53399290 1.0000 80 chr6:121655014-121655094 1.0000 80 chr12:125407226-12540730 1.0000 80 chr1:161581725-161581805 1.0000 80 chr16:3241555-3241635 1.0000 80 chr20:44486645-44486725 1.0000 80 chr17:8090208-8090288 1.0000 80 chr9:139402230-139402310 1.0000 80 chr16:8715286-8715366 1.0000 80 chr4:2263280-2263360 1.0000 80 chr5:133862660-133862740 1.0000 80 chr22:36784602-36784682 1.0000 80 chr19:41946040-41946120 1.0000 80 chr14:21098598-21098678 1.0000 80 chr14:21121237-21121317 1.0000 80 chr8:67026254-67026334 1.0000 80 chr6:27553251-27553331 1.0000 80 chr16:3237883-3237963 1.0000 80 chr19:4725732-4725812 1.0000 80 chr19:55574720-55574800 1.0000 80 chr19:6280335-6280415 1.0000 80 chr2:131851681-131851761 1.0000 80 chr5:94889423-94889503 1.0000 80 chr6:26331614-26331694 1.0000 80 chr6:28949390-28949470 1.0000 80 chr6:26305671-26305751 1.0000 80 chr2:9835468-9835548 1.0000 80 chr12:72079358-72079438 1.0000 80 chr3:179279916-179279996 1.0000 80 chr16:79298394-79298474 1.0000 80 chr3:197355203-197355283 1.0000 80 chr6:32046314-32046394 1.0000 80 chr10:88466872-88466952 1.0000 80 chr6:27500013-27500093 1.0000 80 chr1:36106599-36106679 1.0000 80 chr9:99417950-99418030 1.0000 80 chr12:44153487-44153567 1.0000 80 chr17:78965492-78965572 1.0000 80 chr6:26299919-26299999 1.0000 80 chr19:43948770-43948850 1.0000 80 chr7:66205093-66205173 1.0000 80 chr19:13228834-13228914 1.0000 80 chr3:53925267-53925347 1.0000 80 chr19:33886078-33886158 1.0000 80 chr10:135203846-13520392 1.0000 80 chr6:28779845-28779925 1.0000 80 chr20:2732999-2733079 1.0000 80 chr1:26796823-26796903 1.0000 80 chr11:10772001-10772081 1.0000 80 chr1:17053792-17053872 1.0000 80 chr21:33935410-33935490 1.0000 80 chrX:47517911-47517991 1.0000 80 chr14:21131331-21131411 1.0000 80 chr14:21125612-21125692 1.0000 80 chr6:28687520-28687600 1.0000 80 chrX:119006655-119006735 1.0000 80 chr6:27551214-27551294 1.0000 80 chr12:112075397-11207547 1.0000 80 chr2:216149751-216149831 1.0000 80 chr19:39703197-39703277 1.0000 80 chr6:28615960-28616040 1.0000 80 chr1:193092472-193092552 1.0000 80 chr5:131894502-131894582 1.0000 80 chr12:122277023-12227710 1.0000 80 chr17:8150819-8150899 1.0000 80 chr6:27199079-27199159 1.0000 80 chr3:12837824-12837904 1.0000 80 chr6:26758486-26758566 1.0000 80 chr19:734360-734440 1.0000 80 chr9:137237726-137237806 1.0000 80 chr6:28611271-28611351 1.0000 80 chr6:26569493-26569573 1.0000 80 chr15:58468930-58469010 1.0000 80 chr16:85404038-85404118 1.0000 80 chr12:117020460-11702054 1.0000 80 chr8:67026455-67026535 1.0000 80 chr19:4187774-4187854 1.0000 80 chr19:13961232-13961312 1.0000 80 chr6:27759118-27759198 1.0000 80 chr6:27181026-27181106 1.0000 80 chr6:26314214-26314294 1.0000 80 chr6:26304993-26305073 1.0000 80 chr1:17188429-17188509 1.0000 80 chr6:27688872-27688952 1.0000 80 chr7:129250749-129250829 1.0000 80 chr21:9881482-9881562 1.0000 80 chr1:222638358-222638438 1.0000 80 chr6:28956824-28956904 1.0000 80 chr2:26284436-26284516 1.0000 80 chr6:28318201-28318281 1.0000 80 chr17:73030472-73030552 1.0000 80 chr7:101390698-101390778 1.0000 80 chr1:153644470-153644550 1.0000 80 chr5:1594958-1595038 1.0000 80 chr2:24713711-24713791 1.0000 80 chr2:196271792-196271872 1.0000 80 chr1:150338211-150338291 1.0000 80 chr6:27663108-27663188 1.0000 80 chr2:70476604-70476684 1.0000 80 chr6:26555547-26555627 1.0000 80 chr6:27559570-27559650 1.0000 80 chr3:57679184-57679264 1.0000 80 chr16:3225734-3225814 1.0000 80 chr17:30669784-30669864 1.0000 80 chr17:8042185-8042265 1.0000 80 chr6:28732209-28732289 1.0000 80 chr17:80170065-80170145 1.0000 80 chr6:28703185-28703265 1.0000 80 chr1:16338871-16338951 1.0000 80 chr19:17850441-17850521 1.0000 80 chr11:925620-925700 1.0000 80 chr2:70418500-70418580 1.0000 80 chr16:14379775-14379855 1.0000 80 chr17:8124864-8124944 1.0000 80 chr19:4585706-4585786 1.0000 80 chr2:220387290-220387370 1.0000 80 chr14:21151462-21151542 1.0000 80 chr19:1383300-1383380 1.0000 80 chr20:43017341-43017421 1.0000 80 chr17:8122076-8122156 1.0000 80 chr1:33211949-33212029 1.0000 80 chr6:27636378-27636458 1.0000 80 chr1:895965-896045 1.0000 80 chr7:73098671-73098751 1.0000 80 chr6:28911345-28911425 1.0000 80 chr6:28775602-28775682 1.0000 80 chr5:140092118-140092198 1.0000 80 chr7:148682769-148682849 1.0000 80 chr6:134578197-134578277 1.0000 80 chr19:4724621-4724701 1.0000 80 chr2:135208556-135208636 1.0000 80 chr6:27509531-27509611 1.0000 80 chr15:52311969-52312049 1.0000 80 chr11:59319258-59319338 1.0000 80 chr12:112278741-11227882 1.0000 80 chr17:1732677-1732757 1.0000 80 chr7:140176587-140176667 1.0000 80 chr19:2474407-2474487 1.0000 80 chr19:1905082-1905162 1.0000 80 chr7:75849600-75849680 1.0000 80 chr17:8023570-8023650 1.0000 80 chr17:37025532-37025612 1.0000 80 chr1:149298554-149298634 1.0000 80 chr19:30277272-30277352 1.0000 80 chr18:9138276-9138356 1.0000 80 chr6:26328363-26328443 1.0000 80 chr9:37467687-37467767 1.0000 80 chr1:31228354-31228434 1.0000 80 chr6:28757493-28757573 1.0000 80 chr11:2187428-2187508 1.0000 80 chr6:27515529-27515609 1.0000 80 chr6:26311953-26312033 1.0000 80 chr17:76137706-76137786 1.0000 80 chr11:66140092-66140172 1.0000 80 chr12:56583413-56583493 1.0000 80 chr3:135969016-135969096 1.0000 80 chr16:27367139-27367219 1.0000 80 chr19:40921860-40921940 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_GTF3C2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/GTF3C2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.218 C 0.277 G 0.283 T 0.221 Background letter frequencies (from file dataset with add-one prior applied): A 0.218 C 0.277 G 0.283 T 0.221 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GGGTTCGA MEME-1 width = 8 sites = 136 llr = 1023 E-value = 7.2e-095 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGTTCGA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1221::1a pos.-specific C :::3:9:: probability G 986:::9: matrix T ::26a1:: bits 2.2 * 2.0 * * 1.8 * * 1.5 ** * Relative 1.3 * **** Entropy 1.1 ** **** (10.8 bits) 0.9 ** ***** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGTTCGA consensus TC sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTTCGA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr11:59319258-59319338 30 1.89e-05 atatccgcgt gggttcga accccacttc chr6:27636378-27636458 35 1.89e-05 ccaaggtcgc gggttcga tccccgtacg chr17:8124864-8124944 51 1.89e-05 cagttgaccc gggttcga ttcccggcca chr16:14379775-14379855 24 1.89e-05 cgaagatcac gggttcga accccgtccg chr16:3225734-3225814 8 1.89e-05 gggtcgt gggttcga gccccacgtt chr6:27688872-27688952 37 1.89e-05 accgagagtg gggttcga acccacgcgg chr6:26314214-26314294 24 1.89e-05 ttgaagtcag gggttcga gaccagcctg chr6:26299919-26299999 36 1.89e-05 agaagattga gggttcga atcccttcgt chr19:6280335-6280415 17 1.89e-05 CTGAGGTTAC GGGTTCGA GCCCTGTGGA chr16:8715286-8715366 21 1.89e-05 cccacacccc gggttcga atccaggctt chr17:8090208-8090288 35 1.89e-05 ctgcacgcgt gggttcga atcccatcct chr14:102786063-10278614 14 1.89e-05 TCAGCGACCC GGGTTCGA GTCCCCGCCT chr6:27471535-27471615 37 1.89e-05 cgggagaccg gggttcga ttccccgacg chr5:171881838-171881918 4 1.89e-05 ccc gggttcga atcccggctt chr6:27530004-27530084 23 1.89e-05 caaaggttgc gggttcga gtccctccag chr6:27241760-27241840 30 1.89e-05 ccaaggtcgt gggttcga tccccatatc chr5:140092118-140092198 63 3.37e-05 tggccaggct ggtttcga actcttgacc chr17:78965492-78965572 57 3.37e-05 GGCGGGCTGT GGTTTCGA ACCCGCGGCA chr19:4968540-4968620 42 3.37e-05 TCCGGCCACG GGTTTCGA ACCTCCAGCC chr17:8023570-8023650 73 4.83e-05 ggcagcggtg ggattcga chr19:1905082-1905162 56 4.83e-05 CCGCTTGATG GGATTCGA ACCTGCAAAC chr6:27509531-27509611 34 4.83e-05 gtagtcggca ggattcga acctgcgcgg chr6:28911345-28911425 65 4.83e-05 ggcagcggtg ggattcga acccacgc chr17:8042185-8042265 25 4.83e-05 gctgtgagca ggattcga acctgcgcgg chr3:12837824-12837904 46 4.83e-05 ggcagaagtg ggattcga acctgagact chr6:28615960-28616040 35 4.83e-05 ggccccgctg ggattcga acccaggatc chrX:47517911-47517991 50 4.83e-05 ggccgagcca ggattcga acccgagaac chr19:13228834-13228914 40 4.83e-05 ggcggggcca ggattcga accATCGAGC chr6:26305671-26305751 58 4.83e-05 gacgaggatg ggattcga acccacgcgt chr1:161581725-161581805 22 4.83e-05 gtcaaaagtg ggattcga acccacgcct chr6:26312800-26312880 35 4.83e-05 gtagtcggca ggattcga acctgcgcgg chr16:14379395-14379475 67 4.83e-05 GGCGGGGCTG GGATTCGA ACCCGA chr17:47929004-47929084 48 4.83e-05 ggcagaggtg ggattcga acctagacct chr21:9881482-9881562 40 7.20e-05 ggcgcaacct gggctcga accagggtcg chr20:36531903-36531983 49 7.20e-05 GGCCGCCCCG GGGCTCGA ACCGGCGCCA chr9:37467687-37467767 31 8.65e-05 acgaggtcag gagttcga ggccagcctg chr18:9138276-9138356 27 8.65e-05 ctgaggtcag gagttcga gaccagcctg chr7:148682769-148682849 31 8.65e-05 ctgaggtcgg gagttcga gaccagcctg chr2:70418500-70418580 39 8.65e-05 ttgaggctag gagttcga gaccagcctg chr2:196271792-196271872 20 8.65e-05 tcgagcccag gagttcga gaccagcctg chr1:222638358-222638438 39 8.65e-05 caggggtcgc gagttcga tcctcgctgg chr7:129250749-129250829 30 8.65e-05 ttgggcccag gagttcga gaccagccta chr6:27181026-27181106 7 8.65e-05 gatcgg gagttcga atccagcctg chr6:27199079-27199159 40 8.65e-05 ctgaggtcag gagttcga ggccagtctg chr10:135203846-13520392 27 8.65e-05 ctgaggccaa gagttcga gaccagcctg chr9:99417950-99418030 39 8.65e-05 ttgaggccag gagttcga gaccagcctg chr19:41946040-41946120 22 8.65e-05 ttgaagccag gagttcga gaccagcctg chr22:36784602-36784682 31 8.65e-05 TGAGCGTCTT GAGTTCGA TTCCTGACCC chr12:53399210-53399290 31 8.65e-05 ttgagtccag gagttcga gaccagccca chr7:148661901-148661981 43 8.65e-05 ttgaggtcag gagttcga gaccagcctg chr11:67771686-67771766 35 8.65e-05 TCTGGGGTGt gagttcga atccccactc chr6:28709861-28709941 11 8.65e-05 ctgaggtcag gagttcga gaccagcctg chr19:18119046-18119126 26 8.65e-05 GCCGGTTCGC GAGTTCGA GGCCAGGTTC chr12:112791377-11279145 47 8.65e-05 acaaggtcag gagttcga taccagtctg chr1:76191848-76191928 37 8.65e-05 ttaaggccag gagttcga gaccagcctg chr14:58707433-58707513 63 8.65e-05 acgaggtcag gagttcga gaccagcctg chr1:145398750-145398830 45 8.65e-05 ctgaggtcag gagttcga gaccggcctc chr19:2702944-2703024 11 8.65e-05 GTAGTTTCGC GAGTTCGA ATCCCGCGCT chr3:135969016-135969096 49 1.05e-04 GGCAGCACCG GGTCTCGA ACTCTCACGC chr19:2474407-2474487 39 1.05e-04 tggtcaggtt ggtctcga actcctgacc chr12:112278741-11227882 51 1.05e-04 tggccaggcc ggtctcga actcctgact chr1:150338211-150338291 70 1.05e-04 tggcctggct ggtctcga act chr2:26284436-26284516 38 1.05e-04 ttcccaggct ggtctcga actcctacct chr6:26304993-26305073 32 1.05e-04 tgctcaggtt ggtctcga actcctggac chr17:8150819-8150899 23 1.05e-04 tggtcaggct ggtctcga actcctgacc chrX:119006655-119006735 42 1.05e-04 tggcgaggct ggtctcga acttctgacc chr1:26796823-26796903 29 1.05e-04 tgtcctggct ggtctcga actcctgacc chr19:43948770-43948850 41 1.05e-04 tgaccaggct ggtctcga acccctgacc chr3:197355203-197355283 48 1.05e-04 tgcccaggct ggtctcga acttgtggcc chr5:94889423-94889503 54 1.05e-04 tggccaggct ggtctcga acccctaacc chr19:4725732-4725812 32 1.05e-04 ggtcatggct ggtctcga actcctgacc chr14:31666410-31666490 36 1.05e-04 CACCGTggct ggtctcga actcctgacc chr8:61428913-61428993 46 1.05e-04 tggccaggct ggtctcga actcctgacc chr11:70243627-70243707 39 1.05e-04 tgaccaggct ggtctcga actcctggcc chr19:921631-921711 70 1.05e-04 tagccaggat ggtctcga tct chr19:41222504-41222584 51 1.05e-04 ggcagaggaa ggtctcga acccacaccc chr2:217363150-217363230 43 1.05e-04 tggccaggct ggtctcga actcctgacc chr6:27441811-27441891 44 1.05e-04 tggccaggct ggtctcga actcctgacc chr16:3201327-3201407 35 1.05e-04 tggccaggct ggtctcga actcccgacc chr16:50099647-50099727 38 1.05e-04 tgcccaagat ggtctcga acttctggcc chr5:180644111-180644191 31 1.05e-04 tgcctaggct ggtctcga actcttaagc chr17:73030472-73030552 65 1.35e-04 accccaggtg ggactcga acccacaa chr6:27177654-27177734 2 1.35e-04 t ggactcga aatccaatgg chr22:50624062-50624142 54 1.35e-04 gaccgcggcg ggactcga accctccctc chr6:28757493-28757573 65 1.79e-04 ggaggtgccg gggatcga acccggga chr19:4724621-4724701 37 1.79e-04 gtttccgccc gggatcga accggggacc chr19:1383300-1383380 72 1.79e-04 gccgaaaccc gggatcga a chr2:220387290-220387370 36 1.79e-04 CTGAGGTCGC GGGTTCAA ATCCCACCCG chr6:28703185-28703265 32 1.79e-04 ggaagtgctg gggatcga acccagagcc chr6:28956824-28956904 14 1.79e-04 tcgggggcgt gggttcaa atcccaccgc chr1:17188429-17188509 35 1.79e-04 cgggagaccc gggttcaa ttcccggcca chr8:67026455-67026535 19 1.79e-04 gagaggtagc gggatcga tgcccgcatc chr19:39703197-39703277 22 1.79e-04 ccaggactgt gggttcaa atcctgcctc chr6:28687520-28687600 10 1.79e-04 cgaggcccc gggttcaa tccctggcac chr1:17053792-17053872 36 1.79e-04 tgggagaccc gggttcaa ttcccggcca chr11:10772001-10772081 37 1.79e-04 tccgtctccc gggttcaa gcgagtctcc chr6:28949390-28949470 70 1.79e-04 gccgaaaccc gggatcga acc chr6:28574945-28575025 37 1.79e-04 acgaggtccc gggttcaa tccccggcac chr6:27242929-27243009 72 1.79e-04 ggccagtacg gggatcga a chr20:48629671-48629751 11 1.79e-04 ccagctgcct gggttcaa atcctggctc chr6:26328363-26328443 55 2.38e-04 agaagattcc aggttcga ctcctggctg chr6:27500013-27500093 33 2.38e-04 ttccccacgc aggttcga atcctgccga chr19:55574720-55574800 32 2.38e-04 ggagtgaaat aggttcga atcccaccac chr9:127595319-127595399 7 2.38e-04 GGTTCC AGGTTCGA ATCCCATCTC chr6:27173865-27173945 13 2.38e-04 gtttccgcct ggtttcaa accggggacc chr6:26311953-26312033 53 2.64e-04 tcggatcgct ggattcaa agtccagagt chr6:27551214-27551294 33 2.64e-04 tccccgtcgg ggaatcga accccggtct chr14:21125612-21125692 22 2.64e-04 ccttcgagct ggaatcga accagcgacc chr14:21131331-21131411 31 2.64e-04 ccttcgagcc ggaatcga accagcgacc chr14:21121237-21121317 32 2.64e-04 ccttcgagcc ggaatcga accagcgacc chr6:26311400-26311480 55 2.64e-04 tcggatcgct ggattcaa agtccagagt chr1:149298554-149298634 12 3.51e-04 gtttccgccc agtttcga accggggacc chr14:21151462-21151542 36 3.51e-04 cttaggtcgc tggttcga ttccggctcg chr6:28732209-28732289 5 3.51e-04 tccc tggttcga tcccgggttt chr8:67026254-67026334 35 3.51e-04 cttaggtcgc tggttcga ttccggctcg chr6:27118038-27118118 34 3.51e-04 gaaaggtccc tggttcga aaccaggtgg chr6:27553251-27553331 42 3.88e-04 ctgaggtcag gagttcaa gaccaacttg chr17:76137706-76137786 38 4.12e-04 gccagagctg ggatttga acccaggcac chr17:37025532-37025612 24 4.12e-04 gggggcaccc ggatttga accagggacc chr16:79298394-79298474 67 4.12e-04 GGCTGAGCCA GGATTTGA CCCCAA chr19:13961232-13961312 66 4.56e-04 CCCCGGCCTG AGGCTCGA ACCCAGG chr11:66140092-66140172 47 6.28e-04 tggccagtct agtctcga actcatcttt chr12:117020460-11702054 34 6.28e-04 tgcccgggct agtctcga actcctgacc chr7:150115114-150115194 15 6.28e-04 GGAGCTCCTG GGGTTCCA TACTGCCTCC chr12:120554049-12055412 57 6.77e-04 ggtagtcctg agactcga acccacgtct chr12:112075397-11207547 45 7.37e-04 tgcccaggct ggtcttga actcccagcc chr6:27559570-27559650 34 7.96e-04 gcctgaacag ggacttga accctggacc chr20:2732999-2733079 39 7.96e-04 GTCCCCCCGC GGGTTCGC GCCCAGCCCC chrX:37544862-37544942 14 7.96e-04 CGTAGGGCGC GGGTTCGC GGCCCGCCAG chr6:28775602-28775682 19 8.46e-04 gccgaaaccc gggattga accagggacc chr2:24713711-24713791 41 8.46e-04 GAGCGCCCTG GTGTTCGA GGCCGCTTCC chr6:28779845-28779925 15 8.46e-04 ggaggtattg gggattga acccaggacc chr3:50457234-50457314 18 9.37e-04 tatctcttct gatctcaa aagctaagca chr6:28318201-28318281 34 1.02e-03 tcagattacc tggttcaa atcctgcctc chr5:55073331-55073411 24 1.02e-03 aagctaagca gggttgga cctggttagt chr16:85404038-85404118 32 1.20e-03 CAACCCAGGA GGGCTCCA GGGAGGAGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTTCGA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:59319258-59319338 1.9e-05 29_[+1]_43 chr6:27636378-27636458 1.9e-05 34_[+1]_38 chr17:8124864-8124944 1.9e-05 50_[+1]_22 chr16:14379775-14379855 1.9e-05 23_[+1]_49 chr16:3225734-3225814 1.9e-05 7_[+1]_65 chr6:27688872-27688952 1.9e-05 36_[+1]_36 chr6:26314214-26314294 1.9e-05 23_[+1]_49 chr6:26299919-26299999 1.9e-05 35_[+1]_37 chr19:6280335-6280415 1.9e-05 16_[+1]_56 chr16:8715286-8715366 1.9e-05 20_[+1]_52 chr17:8090208-8090288 1.9e-05 34_[+1]_38 chr14:102786063-10278614 1.9e-05 13_[+1]_59 chr6:27471535-27471615 1.9e-05 36_[+1]_36 chr5:171881838-171881918 1.9e-05 3_[+1]_69 chr6:27530004-27530084 1.9e-05 22_[+1]_50 chr6:27241760-27241840 1.9e-05 29_[+1]_43 chr5:140092118-140092198 3.4e-05 62_[+1]_10 chr17:78965492-78965572 3.4e-05 56_[+1]_16 chr19:4968540-4968620 3.4e-05 41_[+1]_31 chr17:8023570-8023650 4.8e-05 72_[+1] chr19:1905082-1905162 4.8e-05 55_[+1]_17 chr6:27509531-27509611 4.8e-05 33_[+1]_39 chr6:28911345-28911425 4.8e-05 64_[+1]_8 chr17:8042185-8042265 4.8e-05 24_[+1]_48 chr3:12837824-12837904 4.8e-05 45_[+1]_27 chr6:28615960-28616040 4.8e-05 34_[+1]_38 chrX:47517911-47517991 4.8e-05 49_[+1]_23 chr19:13228834-13228914 4.8e-05 39_[+1]_33 chr6:26305671-26305751 4.8e-05 57_[+1]_15 chr1:161581725-161581805 4.8e-05 21_[+1]_51 chr6:26312800-26312880 4.8e-05 34_[+1]_38 chr16:14379395-14379475 4.8e-05 66_[+1]_6 chr17:47929004-47929084 4.8e-05 47_[+1]_25 chr21:9881482-9881562 7.2e-05 39_[+1]_33 chr20:36531903-36531983 7.2e-05 48_[+1]_24 chr9:37467687-37467767 8.7e-05 30_[+1]_42 chr18:9138276-9138356 8.7e-05 26_[+1]_46 chr7:148682769-148682849 8.7e-05 30_[+1]_42 chr2:70418500-70418580 8.7e-05 38_[+1]_34 chr2:196271792-196271872 8.7e-05 19_[+1]_53 chr1:222638358-222638438 8.7e-05 38_[+1]_34 chr7:129250749-129250829 8.7e-05 29_[+1]_43 chr6:27181026-27181106 8.7e-05 6_[+1]_66 chr6:27199079-27199159 8.7e-05 39_[+1]_33 chr10:135203846-13520392 8.7e-05 26_[+1]_46 chr9:99417950-99418030 8.7e-05 38_[+1]_34 chr19:41946040-41946120 8.7e-05 21_[+1]_51 chr22:36784602-36784682 8.7e-05 30_[+1]_42 chr12:53399210-53399290 8.7e-05 30_[+1]_42 chr7:148661901-148661981 8.7e-05 42_[+1]_30 chr11:67771686-67771766 8.7e-05 34_[+1]_38 chr6:28709861-28709941 8.7e-05 10_[+1]_62 chr19:18119046-18119126 8.7e-05 25_[+1]_47 chr12:112791377-11279145 8.7e-05 46_[+1]_26 chr1:76191848-76191928 8.7e-05 36_[+1]_36 chr14:58707433-58707513 8.7e-05 62_[+1]_10 chr1:145398750-145398830 8.7e-05 44_[+1]_28 chr19:2702944-2703024 8.7e-05 10_[+1]_62 chr3:135969016-135969096 0.00011 48_[+1]_24 chr19:2474407-2474487 0.00011 38_[+1]_34 chr12:112278741-11227882 0.00011 50_[+1]_22 chr1:150338211-150338291 0.00011 69_[+1]_3 chr2:26284436-26284516 0.00011 37_[+1]_35 chr6:26304993-26305073 0.00011 31_[+1]_41 chr17:8150819-8150899 0.00011 22_[+1]_50 chrX:119006655-119006735 0.00011 41_[+1]_31 chr1:26796823-26796903 0.00011 28_[+1]_44 chr19:43948770-43948850 0.00011 40_[+1]_32 chr3:197355203-197355283 0.00011 47_[+1]_25 chr5:94889423-94889503 0.00011 53_[+1]_19 chr19:4725732-4725812 0.00011 31_[+1]_41 chr14:31666410-31666490 0.00011 35_[+1]_37 chr8:61428913-61428993 0.00011 45_[+1]_27 chr11:70243627-70243707 0.00011 38_[+1]_34 chr19:921631-921711 0.00011 69_[+1]_3 chr19:41222504-41222584 0.00011 50_[+1]_22 chr2:217363150-217363230 0.00011 42_[+1]_30 chr6:27441811-27441891 0.00011 43_[+1]_29 chr16:3201327-3201407 0.00011 34_[+1]_38 chr16:50099647-50099727 0.00011 37_[+1]_35 chr5:180644111-180644191 0.00011 30_[+1]_42 chr17:73030472-73030552 0.00013 64_[+1]_8 chr6:27177654-27177734 0.00013 1_[+1]_71 chr22:50624062-50624142 0.00013 53_[+1]_19 chr6:28757493-28757573 0.00018 64_[+1]_8 chr19:4724621-4724701 0.00018 36_[+1]_36 chr19:1383300-1383380 0.00018 71_[+1]_1 chr2:220387290-220387370 0.00018 35_[+1]_37 chr6:28703185-28703265 0.00018 31_[+1]_41 chr6:28956824-28956904 0.00018 13_[+1]_59 chr1:17188429-17188509 0.00018 34_[+1]_38 chr8:67026455-67026535 0.00018 18_[+1]_54 chr19:39703197-39703277 0.00018 21_[+1]_51 chr6:28687520-28687600 0.00018 9_[+1]_63 chr1:17053792-17053872 0.00018 35_[+1]_37 chr11:10772001-10772081 0.00018 36_[+1]_36 chr6:28949390-28949470 0.00018 69_[+1]_3 chr6:28574945-28575025 0.00018 36_[+1]_36 chr6:27242929-27243009 0.00018 71_[+1]_1 chr20:48629671-48629751 0.00018 10_[+1]_62 chr6:26328363-26328443 0.00024 54_[+1]_18 chr6:27500013-27500093 0.00024 32_[+1]_40 chr19:55574720-55574800 0.00024 31_[+1]_41 chr9:127595319-127595399 0.00024 6_[+1]_66 chr6:27173865-27173945 0.00024 12_[+1]_60 chr6:26311953-26312033 0.00026 52_[+1]_20 chr6:27551214-27551294 0.00026 32_[+1]_40 chr14:21125612-21125692 0.00026 21_[+1]_51 chr14:21131331-21131411 0.00026 30_[+1]_42 chr14:21121237-21121317 0.00026 31_[+1]_41 chr6:26311400-26311480 0.00026 54_[+1]_18 chr1:149298554-149298634 0.00035 11_[+1]_61 chr14:21151462-21151542 0.00035 35_[+1]_37 chr6:28732209-28732289 0.00035 4_[+1]_68 chr8:67026254-67026334 0.00035 34_[+1]_38 chr6:27118038-27118118 0.00035 33_[+1]_39 chr6:27553251-27553331 0.00039 41_[+1]_31 chr17:76137706-76137786 0.00041 37_[+1]_35 chr17:37025532-37025612 0.00041 23_[+1]_49 chr16:79298394-79298474 0.00041 66_[+1]_6 chr19:13961232-13961312 0.00046 65_[+1]_7 chr11:66140092-66140172 0.00063 46_[+1]_26 chr12:117020460-11702054 0.00063 33_[+1]_39 chr7:150115114-150115194 0.00063 14_[+1]_58 chr12:120554049-12055412 0.00068 56_[+1]_16 chr12:112075397-11207547 0.00074 44_[+1]_28 chr6:27559570-27559650 0.0008 33_[+1]_39 chr20:2732999-2733079 0.0008 38_[+1]_34 chrX:37544862-37544942 0.0008 13_[+1]_59 chr6:28775602-28775682 0.00085 18_[+1]_54 chr2:24713711-24713791 0.00085 40_[+1]_32 chr6:28779845-28779925 0.00085 14_[+1]_58 chr3:50457234-50457314 0.00094 17_[+1]_55 chr6:28318201-28318281 0.001 33_[+1]_39 chr5:55073331-55073411 0.001 23_[+1]_49 chr16:85404038-85404118 0.0012 31_[+1]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTTCGA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGTTCGA width=8 seqs=136 chr11:59319258-59319338 ( 30) GGGTTCGA 1 chr6:27636378-27636458 ( 35) GGGTTCGA 1 chr17:8124864-8124944 ( 51) GGGTTCGA 1 chr16:14379775-14379855 ( 24) GGGTTCGA 1 chr16:3225734-3225814 ( 8) GGGTTCGA 1 chr6:27688872-27688952 ( 37) GGGTTCGA 1 chr6:26314214-26314294 ( 24) GGGTTCGA 1 chr6:26299919-26299999 ( 36) GGGTTCGA 1 chr19:6280335-6280415 ( 17) GGGTTCGA 1 chr16:8715286-8715366 ( 21) GGGTTCGA 1 chr17:8090208-8090288 ( 35) GGGTTCGA 1 chr14:102786063-10278614 ( 14) GGGTTCGA 1 chr6:27471535-27471615 ( 37) GGGTTCGA 1 chr5:171881838-171881918 ( 4) GGGTTCGA 1 chr6:27530004-27530084 ( 23) GGGTTCGA 1 chr6:27241760-27241840 ( 30) GGGTTCGA 1 chr5:140092118-140092198 ( 63) GGTTTCGA 1 chr17:78965492-78965572 ( 57) GGTTTCGA 1 chr19:4968540-4968620 ( 42) GGTTTCGA 1 chr17:8023570-8023650 ( 73) GGATTCGA 1 chr19:1905082-1905162 ( 56) GGATTCGA 1 chr6:27509531-27509611 ( 34) GGATTCGA 1 chr6:28911345-28911425 ( 65) GGATTCGA 1 chr17:8042185-8042265 ( 25) GGATTCGA 1 chr3:12837824-12837904 ( 46) GGATTCGA 1 chr6:28615960-28616040 ( 35) GGATTCGA 1 chrX:47517911-47517991 ( 50) GGATTCGA 1 chr19:13228834-13228914 ( 40) GGATTCGA 1 chr6:26305671-26305751 ( 58) GGATTCGA 1 chr1:161581725-161581805 ( 22) GGATTCGA 1 chr6:26312800-26312880 ( 35) GGATTCGA 1 chr16:14379395-14379475 ( 67) GGATTCGA 1 chr17:47929004-47929084 ( 48) GGATTCGA 1 chr21:9881482-9881562 ( 40) GGGCTCGA 1 chr20:36531903-36531983 ( 49) GGGCTCGA 1 chr9:37467687-37467767 ( 31) GAGTTCGA 1 chr18:9138276-9138356 ( 27) GAGTTCGA 1 chr7:148682769-148682849 ( 31) GAGTTCGA 1 chr2:70418500-70418580 ( 39) GAGTTCGA 1 chr2:196271792-196271872 ( 20) GAGTTCGA 1 chr1:222638358-222638438 ( 39) GAGTTCGA 1 chr7:129250749-129250829 ( 30) GAGTTCGA 1 chr6:27181026-27181106 ( 7) GAGTTCGA 1 chr6:27199079-27199159 ( 40) GAGTTCGA 1 chr10:135203846-13520392 ( 27) GAGTTCGA 1 chr9:99417950-99418030 ( 39) GAGTTCGA 1 chr19:41946040-41946120 ( 22) GAGTTCGA 1 chr22:36784602-36784682 ( 31) GAGTTCGA 1 chr12:53399210-53399290 ( 31) GAGTTCGA 1 chr7:148661901-148661981 ( 43) GAGTTCGA 1 chr11:67771686-67771766 ( 35) GAGTTCGA 1 chr6:28709861-28709941 ( 11) GAGTTCGA 1 chr19:18119046-18119126 ( 26) GAGTTCGA 1 chr12:112791377-11279145 ( 47) GAGTTCGA 1 chr1:76191848-76191928 ( 37) GAGTTCGA 1 chr14:58707433-58707513 ( 63) GAGTTCGA 1 chr1:145398750-145398830 ( 45) GAGTTCGA 1 chr19:2702944-2703024 ( 11) GAGTTCGA 1 chr3:135969016-135969096 ( 49) GGTCTCGA 1 chr19:2474407-2474487 ( 39) GGTCTCGA 1 chr12:112278741-11227882 ( 51) GGTCTCGA 1 chr1:150338211-150338291 ( 70) GGTCTCGA 1 chr2:26284436-26284516 ( 38) GGTCTCGA 1 chr6:26304993-26305073 ( 32) GGTCTCGA 1 chr17:8150819-8150899 ( 23) GGTCTCGA 1 chrX:119006655-119006735 ( 42) GGTCTCGA 1 chr1:26796823-26796903 ( 29) GGTCTCGA 1 chr19:43948770-43948850 ( 41) GGTCTCGA 1 chr3:197355203-197355283 ( 48) GGTCTCGA 1 chr5:94889423-94889503 ( 54) GGTCTCGA 1 chr19:4725732-4725812 ( 32) GGTCTCGA 1 chr14:31666410-31666490 ( 36) GGTCTCGA 1 chr8:61428913-61428993 ( 46) GGTCTCGA 1 chr11:70243627-70243707 ( 39) GGTCTCGA 1 chr19:921631-921711 ( 70) GGTCTCGA 1 chr19:41222504-41222584 ( 51) GGTCTCGA 1 chr2:217363150-217363230 ( 43) GGTCTCGA 1 chr6:27441811-27441891 ( 44) GGTCTCGA 1 chr16:3201327-3201407 ( 35) GGTCTCGA 1 chr16:50099647-50099727 ( 38) GGTCTCGA 1 chr5:180644111-180644191 ( 31) GGTCTCGA 1 chr17:73030472-73030552 ( 65) GGACTCGA 1 chr6:27177654-27177734 ( 2) GGACTCGA 1 chr22:50624062-50624142 ( 54) GGACTCGA 1 chr6:28757493-28757573 ( 65) GGGATCGA 1 chr19:4724621-4724701 ( 37) GGGATCGA 1 chr19:1383300-1383380 ( 72) GGGATCGA 1 chr2:220387290-220387370 ( 36) GGGTTCAA 1 chr6:28703185-28703265 ( 32) GGGATCGA 1 chr6:28956824-28956904 ( 14) GGGTTCAA 1 chr1:17188429-17188509 ( 35) GGGTTCAA 1 chr8:67026455-67026535 ( 19) GGGATCGA 1 chr19:39703197-39703277 ( 22) GGGTTCAA 1 chr6:28687520-28687600 ( 10) GGGTTCAA 1 chr1:17053792-17053872 ( 36) GGGTTCAA 1 chr11:10772001-10772081 ( 37) GGGTTCAA 1 chr6:28949390-28949470 ( 70) GGGATCGA 1 chr6:28574945-28575025 ( 37) GGGTTCAA 1 chr6:27242929-27243009 ( 72) GGGATCGA 1 chr20:48629671-48629751 ( 11) GGGTTCAA 1 chr6:26328363-26328443 ( 55) AGGTTCGA 1 chr6:27500013-27500093 ( 33) AGGTTCGA 1 chr19:55574720-55574800 ( 32) AGGTTCGA 1 chr9:127595319-127595399 ( 7) AGGTTCGA 1 chr6:27173865-27173945 ( 13) GGTTTCAA 1 chr6:26311953-26312033 ( 53) GGATTCAA 1 chr6:27551214-27551294 ( 33) GGAATCGA 1 chr14:21125612-21125692 ( 22) GGAATCGA 1 chr14:21131331-21131411 ( 31) GGAATCGA 1 chr14:21121237-21121317 ( 32) GGAATCGA 1 chr6:26311400-26311480 ( 55) GGATTCAA 1 chr1:149298554-149298634 ( 12) AGTTTCGA 1 chr14:21151462-21151542 ( 36) TGGTTCGA 1 chr6:28732209-28732289 ( 5) TGGTTCGA 1 chr8:67026254-67026334 ( 35) TGGTTCGA 1 chr6:27118038-27118118 ( 34) TGGTTCGA 1 chr6:27553251-27553331 ( 42) GAGTTCAA 1 chr17:76137706-76137786 ( 38) GGATTTGA 1 chr17:37025532-37025612 ( 24) GGATTTGA 1 chr16:79298394-79298474 ( 67) GGATTTGA 1 chr19:13961232-13961312 ( 66) AGGCTCGA 1 chr11:66140092-66140172 ( 47) AGTCTCGA 1 chr12:117020460-11702054 ( 34) AGTCTCGA 1 chr7:150115114-150115194 ( 15) GGGTTCCA 1 chr12:120554049-12055412 ( 57) AGACTCGA 1 chr12:112075397-11207547 ( 45) GGTCTTGA 1 chr6:27559570-27559650 ( 34) GGACTTGA 1 chr20:2732999-2733079 ( 39) GGGTTCGC 1 chrX:37544862-37544942 ( 14) GGGTTCGC 1 chr6:28775602-28775682 ( 19) GGGATTGA 1 chr2:24713711-24713791 ( 41) GTGTTCGA 1 chr6:28779845-28779925 ( 15) GGGATTGA 1 chr3:50457234-50457314 ( 18) GATCTCAA 1 chr6:28318201-28318281 ( 34) TGGTTCAA 1 chr5:55073331-55073411 ( 24) GGGTTGGA 1 chr16:85404038-85404118 ( 32) GGGCTCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTTCGA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.12741 E= 7.2e-095 -172 -1373 166 -259 -25 -1373 151 -491 -8 -1373 98 9 -119 -7 -1373 153 -1373 -1373 -1373 218 -1373 176 -526 -210 -98 -424 163 -1373 217 -424 -1373 -1373 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTTCGA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 136 E= 7.2e-095 0.066176 0.000000 0.897059 0.036765 0.183824 0.000000 0.808824 0.007353 0.205882 0.000000 0.558824 0.235294 0.095588 0.264706 0.000000 0.639706 0.000000 0.000000 0.000000 1.000000 0.000000 0.941176 0.007353 0.051471 0.110294 0.014706 0.875000 0.000000 0.985294 0.014706 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTTCGA MEME-1 regular expression -------------------------------------------------------------------------------- GG[GTA][TC]TCGA -------------------------------------------------------------------------------- Time 5.41 secs. ******************************************************************************** ******************************************************************************** MOTIF CCAGCCTG MEME-2 width = 8 sites = 56 llr = 464 E-value = 1.0e-022 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCAGCCTG MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::7::::: pos.-specific C aa2:7a:3 probability G :::a2::7 matrix T ::1:1:a: bits 2.2 2.0 * 1.8 ** * ** 1.5 ** * ** Relative 1.3 ** * ** Entropy 1.1 ** * ** (12.0 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCAGCCTG consensus G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGCCTG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr9:37467687-37467767 41 2.27e-05 gagttcgagg ccagcctg accaatatgg chr18:9138276-9138356 37 2.27e-05 gagttcgaga ccagcctg accaatatag chr17:8023570-8023650 56 2.27e-05 CAGAAAAACT CCAGCCtg gcagcggtgg chr7:148682769-148682849 41 2.27e-05 gagttcgaga ccagcctg accaacatgg chr7:73098671-73098751 2 2.27e-05 a ccagcctg ggcaacgtag chr17:8122076-8122156 7 2.27e-05 tcgaga ccagcctg gccaacatga chr2:70418500-70418580 49 2.27e-05 gagttcgaga ccagcctg agcgacatag chr2:196271792-196271872 30 2.27e-05 gagttcgaga ccagcctg ggcaacaggg chr6:26314214-26314294 34 2.27e-05 gggttcgaga ccagcctg gccaacaggg chr6:27181026-27181106 17 2.27e-05 gagttcgaat ccagcctg accaacatgg chr19:734360-734440 2 2.27e-05 a ccagcctg accaacatgg chr10:135203846-13520392 37 2.27e-05 gagttcgaga ccagcctg ggcaacatag chr9:99417950-99418030 49 2.27e-05 gagttcgaga ccagcctg ggtaggtaac chr19:41946040-41946120 32 2.27e-05 gagttcgaga ccagcctg ggcaacatag chr7:148661901-148661981 53 2.27e-05 gagttcgaga ccagcctg ccaatggtga chr19:4968540-4968620 54 2.27e-05 TTTCGAACCT CCAGCCTG CACGTTCCCG chr6:28709861-28709941 21 2.27e-05 gagttcgaga ccagcctg gccaatatgg chr1:76191848-76191928 47 2.27e-05 gagttcgaga ccagcctg gccaaagcag chr14:58707433-58707513 73 2.27e-05 gagttcgaga ccagcctg chr16:25067243-25067323 1 2.27e-05 . ccagcctg gccaacctga chr12:112075397-11207547 57 4.50e-05 tcttgaactc ccagcctc aagcgatcct chr16:3201327-3201407 65 4.50e-05 aggtgatcgt ccagcctc ggtctccc chr11:66140092-66140172 68 6.82e-05 catcttttga ccaggctg gtctc chr6:27663108-27663188 70 6.82e-05 cccatgttgg ccaggctg gtc chr2:9835468-9835548 31 6.82e-05 gccatgttgc ccaggctg gtcttgaact chr4:2263280-2263360 39 6.82e-05 gcctcctcct ccaggctg gccgccgggg chr12:125407226-12540730 70 6.82e-05 agcatgttgg ccaggctg gtc chr12:102224243-10222432 70 6.82e-05 GGCGCCCGGT CCAGGCTG CGG chr7:142567959-142568039 50 6.82e-05 GCCCCCGCCT CCAGGCTG TCCTCCTGGA chr6:2965082-2965162 30 6.82e-05 acgctgtcgc ccaggctg gaatgcagtt chr22:41776296-41776376 71 6.82e-05 gccctgttgg ccaggctg gt chr19:17850441-17850521 27 9.12e-05 GTGGTGGAGC CCTGCCTG GTATGGTacc chr11:67771686-67771766 8 9.12e-05 gCAGGGG CCTGCCTG TGTGTGCCCT chr2:220387290-220387370 9 1.20e-04 GTCTCACT CCCGCCTG GCTGGGGATC chr19:4725732-4725812 62 1.20e-04 aagagatccg cccgcctg agtctcccag chr6:27471535-27471615 14 1.20e-04 ggtgagtatc cccgcctg tcacgcggga chr19:18549055-18549135 41 1.20e-04 CCATCGGGTC CCCGCCTG GCGGAAGTGG chr6:27199079-27199159 50 1.38e-04 gagttcgagg ccagtctg gtcaagatgg chr12:112791377-11279145 57 1.38e-04 gagttcgata ccagtctg gccaatatgg chr7:101390698-101390778 48 1.61e-04 aggaagcctt ccaggctc tacaggctgc chr6:28318201-28318281 44 1.83e-04 tggttcaaat cctgcctc tgccacttac chr19:39703197-39703277 32 1.83e-04 gggttcaaat cctgcctc tgccttttat chr16:3237883-3237963 26 1.83e-04 AGGAGTAAAG CCTGCCTC GGAAATCTGA chr22:36784602-36784682 47 1.83e-04 GATTCCTGAC CCTGCCTC TTTAGGATCC chr19:40921860-40921940 9 2.29e-04 tggctgcc ccagccta ggaagagaaa chr19:2474407-2474487 69 2.29e-04 agttgatccg cccgcctc ggac chr7:129250749-129250829 40 2.29e-04 gagttcgaga ccagccta ggcaacatag chr17:8150819-8150899 53 2.29e-04 aagtaatccg cccgcctc cgcctcccac chr14:102786063-10278614 25 2.29e-04 GGTTCGAGTC CCCGCCTC GGCCGCCATG chr17:77982384-77982464 53 2.29e-04 GAGTTCGGGC CCCGCCTC CCCCACACCT chr2:217363150-217363230 64 2.29e-04 cctgacccac cccgcctc ccaaagtgt chr6:26328363-26328443 65 2.53e-04 aggttcgact cctggctg gctcgTTC chr6:134578197-134578277 32 2.53e-04 caggatcgga cctggctg gtacttggat chr17:30669784-30669864 68 3.00e-04 agctacCctt ccagtctc tgccc chr6:26304993-26305073 62 3.00e-04 aagtgatcct ccagtctc aaccttccaa chr1:16826083-16826163 60 4.34e-04 GACCCATCGC CCAGCCAG AACGAGGGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGCCTG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:37467687-37467767 2.3e-05 40_[+2]_32 chr18:9138276-9138356 2.3e-05 36_[+2]_36 chr17:8023570-8023650 2.3e-05 55_[+2]_17 chr7:148682769-148682849 2.3e-05 40_[+2]_32 chr7:73098671-73098751 2.3e-05 1_[+2]_71 chr17:8122076-8122156 2.3e-05 6_[+2]_66 chr2:70418500-70418580 2.3e-05 48_[+2]_24 chr2:196271792-196271872 2.3e-05 29_[+2]_43 chr6:26314214-26314294 2.3e-05 33_[+2]_39 chr6:27181026-27181106 2.3e-05 16_[+2]_56 chr19:734360-734440 2.3e-05 1_[+2]_71 chr10:135203846-13520392 2.3e-05 36_[+2]_36 chr9:99417950-99418030 2.3e-05 48_[+2]_24 chr19:41946040-41946120 2.3e-05 31_[+2]_41 chr7:148661901-148661981 2.3e-05 52_[+2]_20 chr19:4968540-4968620 2.3e-05 53_[+2]_19 chr6:28709861-28709941 2.3e-05 20_[+2]_52 chr1:76191848-76191928 2.3e-05 46_[+2]_26 chr14:58707433-58707513 2.3e-05 72_[+2] chr16:25067243-25067323 2.3e-05 [+2]_72 chr12:112075397-11207547 4.5e-05 56_[+2]_16 chr16:3201327-3201407 4.5e-05 64_[+2]_8 chr11:66140092-66140172 6.8e-05 67_[+2]_5 chr6:27663108-27663188 6.8e-05 69_[+2]_3 chr2:9835468-9835548 6.8e-05 30_[+2]_42 chr4:2263280-2263360 6.8e-05 38_[+2]_34 chr12:125407226-12540730 6.8e-05 69_[+2]_3 chr12:102224243-10222432 6.8e-05 69_[+2]_3 chr7:142567959-142568039 6.8e-05 49_[+2]_23 chr6:2965082-2965162 6.8e-05 29_[+2]_43 chr22:41776296-41776376 6.8e-05 70_[+2]_2 chr19:17850441-17850521 9.1e-05 26_[+2]_46 chr11:67771686-67771766 9.1e-05 7_[+2]_65 chr2:220387290-220387370 0.00012 8_[+2]_64 chr19:4725732-4725812 0.00012 61_[+2]_11 chr6:27471535-27471615 0.00012 13_[+2]_59 chr19:18549055-18549135 0.00012 40_[+2]_32 chr6:27199079-27199159 0.00014 49_[+2]_23 chr12:112791377-11279145 0.00014 56_[+2]_16 chr7:101390698-101390778 0.00016 47_[+2]_25 chr6:28318201-28318281 0.00018 43_[+2]_29 chr19:39703197-39703277 0.00018 31_[+2]_41 chr16:3237883-3237963 0.00018 25_[+2]_47 chr22:36784602-36784682 0.00018 46_[+2]_26 chr19:40921860-40921940 0.00023 8_[+2]_64 chr19:2474407-2474487 0.00023 68_[+2]_4 chr7:129250749-129250829 0.00023 39_[+2]_33 chr17:8150819-8150899 0.00023 52_[+2]_20 chr14:102786063-10278614 0.00023 24_[+2]_48 chr17:77982384-77982464 0.00023 52_[+2]_20 chr2:217363150-217363230 0.00023 63_[+2]_9 chr6:26328363-26328443 0.00025 64_[+2]_8 chr6:134578197-134578277 0.00025 31_[+2]_41 chr17:30669784-30669864 0.0003 67_[+2]_5 chr6:26304993-26305073 0.0003 61_[+2]_11 chr1:16826083-16826163 0.00043 59_[+2]_13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGCCTG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCAGCCTG width=8 seqs=56 chr9:37467687-37467767 ( 41) CCAGCCTG 1 chr18:9138276-9138356 ( 37) CCAGCCTG 1 chr17:8023570-8023650 ( 56) CCAGCCTG 1 chr7:148682769-148682849 ( 41) CCAGCCTG 1 chr7:73098671-73098751 ( 2) CCAGCCTG 1 chr17:8122076-8122156 ( 7) CCAGCCTG 1 chr2:70418500-70418580 ( 49) CCAGCCTG 1 chr2:196271792-196271872 ( 30) CCAGCCTG 1 chr6:26314214-26314294 ( 34) CCAGCCTG 1 chr6:27181026-27181106 ( 17) CCAGCCTG 1 chr19:734360-734440 ( 2) CCAGCCTG 1 chr10:135203846-13520392 ( 37) CCAGCCTG 1 chr9:99417950-99418030 ( 49) CCAGCCTG 1 chr19:41946040-41946120 ( 32) CCAGCCTG 1 chr7:148661901-148661981 ( 53) CCAGCCTG 1 chr19:4968540-4968620 ( 54) CCAGCCTG 1 chr6:28709861-28709941 ( 21) CCAGCCTG 1 chr1:76191848-76191928 ( 47) CCAGCCTG 1 chr14:58707433-58707513 ( 73) CCAGCCTG 1 chr16:25067243-25067323 ( 1) CCAGCCTG 1 chr12:112075397-11207547 ( 57) CCAGCCTC 1 chr16:3201327-3201407 ( 65) CCAGCCTC 1 chr11:66140092-66140172 ( 68) CCAGGCTG 1 chr6:27663108-27663188 ( 70) CCAGGCTG 1 chr2:9835468-9835548 ( 31) CCAGGCTG 1 chr4:2263280-2263360 ( 39) CCAGGCTG 1 chr12:125407226-12540730 ( 70) CCAGGCTG 1 chr12:102224243-10222432 ( 70) CCAGGCTG 1 chr7:142567959-142568039 ( 50) CCAGGCTG 1 chr6:2965082-2965162 ( 30) CCAGGCTG 1 chr22:41776296-41776376 ( 71) CCAGGCTG 1 chr19:17850441-17850521 ( 27) CCTGCCTG 1 chr11:67771686-67771766 ( 8) CCTGCCTG 1 chr2:220387290-220387370 ( 9) CCCGCCTG 1 chr19:4725732-4725812 ( 62) CCCGCCTG 1 chr6:27471535-27471615 ( 14) CCCGCCTG 1 chr19:18549055-18549135 ( 41) CCCGCCTG 1 chr6:27199079-27199159 ( 50) CCAGTCTG 1 chr12:112791377-11279145 ( 57) CCAGTCTG 1 chr7:101390698-101390778 ( 48) CCAGGCTC 1 chr6:28318201-28318281 ( 44) CCTGCCTC 1 chr19:39703197-39703277 ( 32) CCTGCCTC 1 chr16:3237883-3237963 ( 26) CCTGCCTC 1 chr22:36784602-36784682 ( 47) CCTGCCTC 1 chr19:40921860-40921940 ( 9) CCAGCCTA 1 chr19:2474407-2474487 ( 69) CCCGCCTC 1 chr7:129250749-129250829 ( 40) CCAGCCTA 1 chr17:8150819-8150899 ( 53) CCCGCCTC 1 chr14:102786063-10278614 ( 25) CCCGCCTC 1 chr17:77982384-77982464 ( 53) CCCGCCTC 1 chr2:217363150-217363230 ( 64) CCCGCCTC 1 chr6:26328363-26328443 ( 65) CCTGGCTG 1 chr6:134578197-134578277 ( 32) CCTGGCTG 1 chr17:30669784-30669864 ( 68) CCAGTCTC 1 chr6:26304993-26305073 ( 62) CCAGTCTC 1 chr1:16826083-16826163 ( 60) CCAGCCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGCCTG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.95106 E= 1.0e-022 -1245 185 -1245 -1245 -1245 185 -1245 -1245 167 -79 -1245 -63 -1245 -1245 182 -1245 -1245 136 -40 -163 -1245 185 -1245 -1245 -361 -1245 -1245 215 -261 -15 133 -1245 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGCCTG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 56 E= 1.0e-022 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.696429 0.160714 0.000000 0.142857 0.000000 0.000000 1.000000 0.000000 0.000000 0.714286 0.214286 0.071429 0.000000 1.000000 0.000000 0.000000 0.017857 0.000000 0.000000 0.982143 0.035714 0.250000 0.714286 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAGCCTG MEME-2 regular expression -------------------------------------------------------------------------------- CCAG[CG]CT[GC] -------------------------------------------------------------------------------- Time 9.00 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAAATTA MEME-3 width = 8 sites = 27 llr = 279 E-value = 4.6e-021 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAATTA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 9aaa92:a pos.-specific C 1:::::1: probability G :::::::: matrix T ::::189: bits 2.2 *** * 2.0 *** * 1.8 **** * 1.5 ***** ** Relative 1.3 ******** Entropy 1.1 ******** (14.9 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAAATTA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAATTA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:73098671-73098751 46 5.24e-06 caagtaataa aaaaaTTA GCCGGGTGTG chr17:30669784-30669864 19 5.24e-06 aaaagtacaa aaaaatta gccacgtgtg chr3:57679184-57679264 38 5.24e-06 aaaaatacga aaaaatta gccaggcgtg chr1:153644470-153644550 35 5.24e-06 ctaaaaatac aaaaatta gccggcgtgc chr1:36106599-36106679 40 5.24e-06 ctaataatac aaaaatta gccaggcgtg chr12:72079358-72079438 3 5.24e-06 at aaaaatta gccgggcgtg chr6:121655014-121655094 45 5.24e-06 ctaaaaacac aaaaatta gccggccgcg chr7:148673874-148673954 40 5.24e-06 ctaaaaatac aaaaatta gcttggtgtg chr5:140104925-140105005 26 5.24e-06 taaaaaatat aaaaatta gctgggtgtg chrX:1365973-1366053 13 5.24e-06 taaaaataca aaaaatta gccgggggtg chr4:128801155-128801235 41 5.24e-06 ctaaaaatac aaaaatta gccagtcgtg chr1:35736197-35736277 10 5.24e-06 aaaaataca aaaaatta acccggcgtg chr6:26568488-26568568 1 5.24e-06 . aaaaatta ggcgggcgtg chr6:28692773-28692853 44 5.24e-06 ctaaaaacac aaaaatta gcagggtgtc chr17:73106868-73106948 28 5.24e-06 cgtctcgtac aaaaatta gctagacgtg chr6:28911345-28911425 38 1.04e-05 AGGGGGAAAA AAAAAATA CCTCACACtg chr12:102224243-10222432 2 1.04e-05 g aaaaaaTA CATACTGTAT chr6:27181026-27181106 60 2.36e-05 actaaaaata caaaatta gacaggcgtg chr6:28709861-28709941 65 2.36e-05 ccaacaatac aaaaatca gccaggca chr16:20818693-20818773 58 2.36e-05 aacacacaca caaaatta gccaggcgtg chr16:25067243-25067323 45 2.36e-05 actaaaaata caaaatta gcgggacctg chr12:44153487-44153567 31 2.90e-05 actaagatac aaaattta gctggcatag chr6:27242929-27243009 39 3.55e-05 AACTGCCATA AAAAACTA CTGGGGAAAA chr6:27688872-27688952 15 4.22e-05 AAAGGAGTCG AAAACTTA ACCtaccgag chr2:196271792-196271872 65 5.52e-05 ctgtctttac aaaaaaca caaaaatt chr6:28615960-28616040 5 5.52e-05 GAAA AAAAAACA CGCACACCCT chr17:8122076-8122156 44 6.05e-05 gtctctacta aaaatata aaaaaaaggc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAATTA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:73098671-73098751 5.2e-06 45_[+3]_27 chr17:30669784-30669864 5.2e-06 18_[+3]_54 chr3:57679184-57679264 5.2e-06 37_[+3]_35 chr1:153644470-153644550 5.2e-06 34_[+3]_38 chr1:36106599-36106679 5.2e-06 39_[+3]_33 chr12:72079358-72079438 5.2e-06 2_[+3]_70 chr6:121655014-121655094 5.2e-06 44_[+3]_28 chr7:148673874-148673954 5.2e-06 39_[+3]_33 chr5:140104925-140105005 5.2e-06 25_[+3]_47 chrX:1365973-1366053 5.2e-06 12_[+3]_60 chr4:128801155-128801235 5.2e-06 40_[+3]_32 chr1:35736197-35736277 5.2e-06 9_[+3]_63 chr6:26568488-26568568 5.2e-06 [+3]_72 chr6:28692773-28692853 5.2e-06 43_[+3]_29 chr17:73106868-73106948 5.2e-06 27_[+3]_45 chr6:28911345-28911425 1e-05 37_[+3]_35 chr12:102224243-10222432 1e-05 1_[+3]_71 chr6:27181026-27181106 2.4e-05 59_[+3]_13 chr6:28709861-28709941 2.4e-05 64_[+3]_8 chr16:20818693-20818773 2.4e-05 57_[+3]_15 chr16:25067243-25067323 2.4e-05 44_[+3]_28 chr12:44153487-44153567 2.9e-05 30_[+3]_42 chr6:27242929-27243009 3.6e-05 38_[+3]_34 chr6:27688872-27688952 4.2e-05 14_[+3]_58 chr2:196271792-196271872 5.5e-05 64_[+3]_8 chr6:28615960-28616040 5.5e-05 4_[+3]_68 chr17:8122076-8122156 6e-05 43_[+3]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAATTA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAATTA width=8 seqs=27 chr7:73098671-73098751 ( 46) AAAAATTA 1 chr17:30669784-30669864 ( 19) AAAAATTA 1 chr3:57679184-57679264 ( 38) AAAAATTA 1 chr1:153644470-153644550 ( 35) AAAAATTA 1 chr1:36106599-36106679 ( 40) AAAAATTA 1 chr12:72079358-72079438 ( 3) AAAAATTA 1 chr6:121655014-121655094 ( 45) AAAAATTA 1 chr7:148673874-148673954 ( 40) AAAAATTA 1 chr5:140104925-140105005 ( 26) AAAAATTA 1 chrX:1365973-1366053 ( 13) AAAAATTA 1 chr4:128801155-128801235 ( 41) AAAAATTA 1 chr1:35736197-35736277 ( 10) AAAAATTA 1 chr6:26568488-26568568 ( 1) AAAAATTA 1 chr6:28692773-28692853 ( 44) AAAAATTA 1 chr17:73106868-73106948 ( 28) AAAAATTA 1 chr6:28911345-28911425 ( 38) AAAAAATA 1 chr12:102224243-10222432 ( 2) AAAAAATA 1 chr6:27181026-27181106 ( 60) CAAAATTA 1 chr6:28709861-28709941 ( 65) AAAAATCA 1 chr16:20818693-20818773 ( 58) CAAAATTA 1 chr16:25067243-25067323 ( 45) CAAAATTA 1 chr12:44153487-44153567 ( 31) AAAATTTA 1 chr6:27242929-27243009 ( 39) AAAAACTA 1 chr6:27688872-27688952 ( 15) AAAACTTA 1 chr2:196271792-196271872 ( 65) AAAAAACA 1 chr6:28615960-28616040 ( 5) AAAAAACA 1 chr17:8122076-8122156 ( 44) AAAATATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAATTA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.3477 E= 4.6e-021 203 -132 -1140 -1140 220 -1140 -1140 -1140 220 -1140 -1140 -1140 220 -1140 -1140 -1140 203 -290 -1140 -158 -24 -290 -1140 181 -1140 -132 -1140 201 220 -1140 -1140 -1140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAATTA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 4.6e-021 0.888889 0.111111 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.888889 0.037037 0.000000 0.074074 0.185185 0.037037 0.000000 0.777778 0.000000 0.111111 0.000000 0.888889 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAATTA MEME-3 regular expression -------------------------------------------------------------------------------- AAAAATTA -------------------------------------------------------------------------------- Time 12.48 secs. ******************************************************************************** ******************************************************************************** MOTIF TTAGTAGA MEME-4 width = 8 sites = 22 llr = 233 E-value = 3.9e-015 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTAGTAGA MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::91:a:a pos.-specific C :::::::: probability G :::9::9: matrix T aa1:a::: bits 2.2 ** ** * 2.0 ** ** * 1.8 ** ** * 1.5 *** ** * Relative 1.3 ******** Entropy 1.1 ******** (15.3 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTAGTAGA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTAGTAGA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:80170065-80170145 73 8.96e-06 ttttgtattt ttagtaga chr6:27663108-27663188 41 8.96e-06 gcccagctac ttagtaga gccgaggttt chr1:150338211-150338291 34 8.96e-06 atttgtattt ttagtaga gacggggttt chr15:58468930-58469010 58 8.96e-06 ttttgtattt ttagtaga gacggggttt chr1:193092472-193092552 63 8.96e-06 tttatgtagt ttagtaga gatgtggttt chr2:216149751-216149831 65 8.96e-06 ttttgtattt ttagtaga gatggggt chr12:112075397-11207547 13 8.96e-06 tttttaattt ttagtaga gacaaggtct chr19:43948770-43948850 4 8.96e-06 ttt ttagtaga gacgggggtg chr3:179279916-179279996 43 8.96e-06 tttctcattt ttagtaga cacagggttt chr2:9835468-9835548 1 8.96e-06 . ttagtaga gatggtcgtc chr2:131851681-131851761 12 8.96e-06 aatttttgtg ttagtaga gacgggggtt chr12:125407226-12540730 37 8.96e-06 ttctgtattt ttagtaga gatggggggg chr8:61428913-61428993 10 8.96e-06 aatgtattt ttagtaga gacgcggttt chr19:921631-921711 34 8.96e-06 ttttgtacat ttagtaga gacggggttt chr6:27441811-27441891 7 8.96e-06 gtattt ttagtaga gacgaggggg chrX:119006655-119006735 6 1.80e-05 ttttt tttgtaga ggcggggttt chr7:66205093-66205173 44 1.80e-05 taaaatttct tttgtaga gatggtgacc chr3:197355203-197355283 12 1.80e-05 ttttaaattt tttgtaga ggccggatct chr5:140092118-140092198 27 2.49e-05 ttctgtattt ttaataga ggcggggttt chr6:26328804-26328884 73 2.49e-05 ttttgtattt ttaataga chr6:26555547-26555627 67 3.19e-05 TCGCCCAACC TTAGTATA TAAGTT chr6:27661416-27661496 39 4.07e-05 ttttgtattt ttagtaca gacgaggttt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTAGTAGA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:80170065-80170145 9e-06 72_[+4] chr6:27663108-27663188 9e-06 40_[+4]_32 chr1:150338211-150338291 9e-06 33_[+4]_39 chr15:58468930-58469010 9e-06 57_[+4]_15 chr1:193092472-193092552 9e-06 62_[+4]_10 chr2:216149751-216149831 9e-06 64_[+4]_8 chr12:112075397-11207547 9e-06 12_[+4]_60 chr19:43948770-43948850 9e-06 3_[+4]_69 chr3:179279916-179279996 9e-06 42_[+4]_30 chr2:9835468-9835548 9e-06 [+4]_72 chr2:131851681-131851761 9e-06 11_[+4]_61 chr12:125407226-12540730 9e-06 36_[+4]_36 chr8:61428913-61428993 9e-06 9_[+4]_63 chr19:921631-921711 9e-06 33_[+4]_39 chr6:27441811-27441891 9e-06 6_[+4]_66 chrX:119006655-119006735 1.8e-05 5_[+4]_67 chr7:66205093-66205173 1.8e-05 43_[+4]_29 chr3:197355203-197355283 1.8e-05 11_[+4]_61 chr5:140092118-140092198 2.5e-05 26_[+4]_46 chr6:26328804-26328884 2.5e-05 72_[+4] chr6:26555547-26555627 3.2e-05 66_[+4]_6 chr6:27661416-27661496 4.1e-05 38_[+4]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTAGTAGA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTAGTAGA width=8 seqs=22 chr17:80170065-80170145 ( 73) TTAGTAGA 1 chr6:27663108-27663188 ( 41) TTAGTAGA 1 chr1:150338211-150338291 ( 34) TTAGTAGA 1 chr15:58468930-58469010 ( 58) TTAGTAGA 1 chr1:193092472-193092552 ( 63) TTAGTAGA 1 chr2:216149751-216149831 ( 65) TTAGTAGA 1 chr12:112075397-11207547 ( 13) TTAGTAGA 1 chr19:43948770-43948850 ( 4) TTAGTAGA 1 chr3:179279916-179279996 ( 43) TTAGTAGA 1 chr2:9835468-9835548 ( 1) TTAGTAGA 1 chr2:131851681-131851761 ( 12) TTAGTAGA 1 chr12:125407226-12540730 ( 37) TTAGTAGA 1 chr8:61428913-61428993 ( 10) TTAGTAGA 1 chr19:921631-921711 ( 34) TTAGTAGA 1 chr6:27441811-27441891 ( 7) TTAGTAGA 1 chrX:119006655-119006735 ( 6) TTTGTAGA 1 chr7:66205093-66205173 ( 44) TTTGTAGA 1 chr3:197355203-197355283 ( 12) TTTGTAGA 1 chr5:140092118-140092198 ( 27) TTAATAGA 1 chr6:26328804-26328884 ( 73) TTAATAGA 1 chr6:26555547-26555627 ( 67) TTAGTATA 1 chr6:27661416-27661496 ( 39) TTAGTACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTAGTAGA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0499 E= 3.9e-015 -1110 -1110 -1110 218 -1110 -1110 -1110 218 198 -1110 -1110 -70 -126 -1110 168 -1110 -1110 -1110 -1110 218 220 -1110 -1110 -1110 -1110 -261 168 -228 220 -1110 -1110 -1110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTAGTAGA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 3.9e-015 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.863636 0.000000 0.000000 0.136364 0.090909 0.000000 0.909091 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.045455 0.909091 0.045455 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTAGTAGA MEME-4 regular expression -------------------------------------------------------------------------------- TTAGTAGA -------------------------------------------------------------------------------- Time 15.80 secs. ******************************************************************************** ******************************************************************************** MOTIF CTCTACTA MEME-5 width = 8 sites = 24 llr = 245 E-value = 8.8e-015 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTCTACTA MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::a::a pos.-specific C a:a1:a3: probability G :::::::: matrix T :a:9::8: bits 2.2 * * 2.0 * * * 1.8 *** ** * 1.5 ****** * Relative 1.3 ******** Entropy 1.1 ******** (14.7 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTCTACTA consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTACTA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr18:9138276-9138356 67 1.09e-05 aaacccccgt ctctacta aatata chr17:8122076-8122156 36 1.09e-05 gaaaccccgt ctctacta aaaatataaa chr17:30669784-30669864 2 1.09e-05 t ctctacta aaagtacaaa chr3:57679184-57679264 21 1.09e-05 gaaaccccgt ctctacta aaaatacgaa chr1:153644470-153644550 20 1.09e-05 gaaactccgt ctctacta aaaatacaaa chr6:26314214-26314294 63 1.09e-05 gacaccctgt ctctacta aaaatacaaa chr6:27181026-27181106 46 1.09e-05 gaaactctgt ctctacta aaaatacaaa chr12:44153487-44153567 17 1.09e-05 aaacccctgt ctctacta agatacaaaa chr1:36106599-36106679 25 1.09e-05 aaatccacat ctctacta ataatacaaa chr6:121655014-121655094 30 1.09e-05 gaaacaccgt ctctacta aaaacacaaa chr7:148673874-148673954 25 1.09e-05 gaaaccctgt ctctacta aaaatacaaa chr5:140104925-140105005 10 1.09e-05 aaacttcct ctctacta aaaaatataa chr4:128801155-128801235 26 1.09e-05 gaaaccccgt ctctacta aaaatacaaa chr6:28692773-28692853 29 1.09e-05 aaacccccgt ctctacta aaaacacaaa chr16:25067243-25067323 31 1.09e-05 aaacccccgt ctctacta aaaatacaaa chr17:37025532-37025612 62 2.46e-05 cagtcaaatg ctctacca ctgagctata chr6:28703185-28703265 70 2.46e-05 taagcatacg ctctacca ctg chr14:21098598-21098678 49 2.46e-05 gagtcctccg ctctacca ggtgagctat chr6:28709861-28709941 50 2.46e-05 gaaacccctt ctctacca acaatacaaa chr16:20818693-20818773 38 2.46e-05 aaatccccgt ctctacca aaaacacaca chr7:148682769-148682849 70 3.82e-05 ggaaccccgt ctccacta aaa chr6:27173865-27173945 60 3.82e-05 gtgataacca ctccacta cggaaacAAC chr17:36858033-36858113 38 4.90e-05 ccagataagt cactacta atccatggtc chr6:28574945-28575025 55 6.61e-05 tccccggcac ctccacca GTTTTGGGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTACTA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr18:9138276-9138356 1.1e-05 66_[+5]_6 chr17:8122076-8122156 1.1e-05 35_[+5]_37 chr17:30669784-30669864 1.1e-05 1_[+5]_71 chr3:57679184-57679264 1.1e-05 20_[+5]_52 chr1:153644470-153644550 1.1e-05 19_[+5]_53 chr6:26314214-26314294 1.1e-05 62_[+5]_10 chr6:27181026-27181106 1.1e-05 45_[+5]_27 chr12:44153487-44153567 1.1e-05 16_[+5]_56 chr1:36106599-36106679 1.1e-05 24_[+5]_48 chr6:121655014-121655094 1.1e-05 29_[+5]_43 chr7:148673874-148673954 1.1e-05 24_[+5]_48 chr5:140104925-140105005 1.1e-05 9_[+5]_63 chr4:128801155-128801235 1.1e-05 25_[+5]_47 chr6:28692773-28692853 1.1e-05 28_[+5]_44 chr16:25067243-25067323 1.1e-05 30_[+5]_42 chr17:37025532-37025612 2.5e-05 61_[+5]_11 chr6:28703185-28703265 2.5e-05 69_[+5]_3 chr14:21098598-21098678 2.5e-05 48_[+5]_24 chr6:28709861-28709941 2.5e-05 49_[+5]_23 chr16:20818693-20818773 2.5e-05 37_[+5]_35 chr7:148682769-148682849 3.8e-05 69_[+5]_3 chr6:27173865-27173945 3.8e-05 59_[+5]_13 chr17:36858033-36858113 4.9e-05 37_[+5]_35 chr6:28574945-28575025 6.6e-05 54_[+5]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTACTA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTCTACTA width=8 seqs=24 chr18:9138276-9138356 ( 67) CTCTACTA 1 chr17:8122076-8122156 ( 36) CTCTACTA 1 chr17:30669784-30669864 ( 2) CTCTACTA 1 chr3:57679184-57679264 ( 21) CTCTACTA 1 chr1:153644470-153644550 ( 20) CTCTACTA 1 chr6:26314214-26314294 ( 63) CTCTACTA 1 chr6:27181026-27181106 ( 46) CTCTACTA 1 chr12:44153487-44153567 ( 17) CTCTACTA 1 chr1:36106599-36106679 ( 25) CTCTACTA 1 chr6:121655014-121655094 ( 30) CTCTACTA 1 chr7:148673874-148673954 ( 25) CTCTACTA 1 chr5:140104925-140105005 ( 10) CTCTACTA 1 chr4:128801155-128801235 ( 26) CTCTACTA 1 chr6:28692773-28692853 ( 29) CTCTACTA 1 chr16:25067243-25067323 ( 31) CTCTACTA 1 chr17:37025532-37025612 ( 62) CTCTACCA 1 chr6:28703185-28703265 ( 70) CTCTACCA 1 chr14:21098598-21098678 ( 49) CTCTACCA 1 chr6:28709861-28709941 ( 50) CTCTACCA 1 chr16:20818693-20818773 ( 38) CTCTACCA 1 chr7:148682769-148682849 ( 70) CTCCACTA 1 chr6:27173865-27173945 ( 60) CTCCACTA 1 chr17:36858033-36858113 ( 38) CACTACTA 1 chr6:28574945-28575025 ( 55) CTCCACCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTACTA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.2272 E= 8.8e-015 -1123 185 -1123 -1123 -239 -1123 -1123 212 -1123 185 -1123 -1123 -1123 -115 -1123 198 220 -1123 -1123 -1123 -1123 185 -1123 -1123 -1123 -15 -1123 176 220 -1123 -1123 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTACTA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 8.8e-015 0.000000 1.000000 0.000000 0.000000 0.041667 0.000000 0.000000 0.958333 0.000000 1.000000 0.000000 0.000000 0.000000 0.125000 0.000000 0.875000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.750000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTACTA MEME-5 regular expression -------------------------------------------------------------------------------- CTCTAC[TC]A -------------------------------------------------------------------------------- Time 19.09 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:2702944-2703024 1.68e-01 10_[+1(8.65e-05)]_62 chr3:50457234-50457314 2.72e-02 80 chr14:104314155-10431423 8.77e-01 80 chr1:16826083-16826163 4.72e-01 80 chr1:145398750-145398830 2.68e-02 44_[+1(8.65e-05)]_28 chr20:44718057-44718137 3.85e-01 80 chr5:180644111-180644191 8.16e-02 80 chr16:50099647-50099727 2.48e-01 80 chr16:3201327-3201407 1.63e-02 27_[+2(6.82e-05)]_29_[+2(4.50e-05)]_\ 8 chr19:18549055-18549135 1.58e-01 80 chr17:73106868-73106948 2.28e-03 27_[+3(5.24e-06)]_45 chr1:228743487-228743567 2.08e-01 80 chr6:27241760-27241840 8.45e-02 29_[+1(1.89e-05)]_43 chr16:25067243-25067323 1.21e-05 [+2(2.27e-05)]_22_[+5(1.09e-05)]_6_\ [+3(2.36e-05)]_28 chr22:41776296-41776376 5.66e-02 70_[+2(6.82e-05)]_2 chr7:152290068-152290148 3.70e-01 80 chr14:58707433-58707513 5.20e-03 62_[+1(8.65e-05)]_2_[+2(2.27e-05)] chr6:27441811-27441891 9.15e-05 6_[+4(8.96e-06)]_22_[+2(6.82e-05)]_\ 36 chr2:217363150-217363230 1.22e-02 35_[+2(6.82e-05)]_37 chr17:77982384-77982464 1.60e-01 80 chr16:20818693-20818773 2.25e-04 37_[+5(2.46e-05)]_12_[+3(2.36e-05)]_\ 15 chr2:136287206-136287286 2.72e-02 80 chr3:45706794-45706874 5.26e-01 80 chr12:120554049-12055412 2.49e-01 80 chr21:22370427-22370507 7.62e-01 80 chr1:76191848-76191928 6.37e-03 36_[+1(8.65e-05)]_2_[+2(2.27e-05)]_\ 26 chr6:28692773-28692853 2.10e-05 28_[+5(1.09e-05)]_7_[+3(5.24e-06)]_\ 29 chr20:36531903-36531983 1.13e-01 48_[+1(7.20e-05)]_24 chr12:112791377-11279145 4.01e-03 46_[+1(8.65e-05)]_26 chr19:41222504-41222584 1.93e-01 80 chr15:83877172-83877252 9.36e-01 80 chr6:26568488-26568568 1.09e-02 [+3(5.24e-06)]_72 chr3:57994185-57994265 2.49e-01 80 chr1:41445167-41445247 3.27e-01 80 chr17:36858033-36858113 1.29e-01 37_[+5(4.90e-05)]_35 chr6:2965082-2965162 5.32e-02 29_[+2(6.82e-05)]_43 chr6:27173865-27173945 6.05e-03 59_[+5(3.82e-05)]_13 chr20:48629671-48629751 1.37e-02 80 chr6:143770969-143771049 4.48e-01 80 chr17:47929004-47929084 6.64e-02 47_[+1(4.83e-05)]_25 chr3:139396198-139396278 8.44e-01 80 chr6:28830714-28830794 7.58e-01 80 chr19:1788978-1789058 5.90e-01 80 chr19:921631-921711 2.67e-04 24_[+4(6.91e-05)]_1_[+4(8.96e-06)]_\ 39 chr2:71558431-71558511 4.69e-01 80 chr6:27530004-27530084 5.55e-02 22_[+1(1.89e-05)]_50 chr19:18119046-18119126 1.82e-01 25_[+1(8.65e-05)]_47 chr9:127595319-127595399 1.07e-01 80 chr1:35736197-35736277 1.67e-02 9_[+3(5.24e-06)]_63 chr5:176448753-176448833 1.14e-01 80 chr6:27242929-27243009 7.12e-03 38_[+3(3.55e-05)]_34 chr16:14379395-14379475 1.93e-01 66_[+1(4.83e-05)]_6 chr10:23286198-23286278 7.94e-01 80 chr11:70243627-70243707 8.86e-03 31_[+2(6.82e-05)]_41 chr4:128801155-128801235 4.04e-05 25_[+5(1.09e-05)]_7_[+3(5.24e-06)]_\ 32 chr7:142567959-142568039 7.78e-02 49_[+2(6.82e-05)]_23 chr5:171881838-171881918 4.63e-02 3_[+1(1.89e-05)]_69 chr6:26328804-26328884 3.74e-02 72_[+4(2.49e-05)] chr8:61428913-61428993 9.15e-05 9_[+4(8.96e-06)]_21_[+2(6.82e-05)]_\ 34 chr6:26319274-26319354 9.30e-02 80 chr6:28709861-28709941 3.93e-07 10_[+1(8.65e-05)]_2_[+2(2.27e-05)]_\ 21_[+5(2.46e-05)]_7_[+3(2.36e-05)]_8 chrX:37544862-37544942 2.26e-01 80 chr19:4968540-4968620 1.19e-03 41_[+1(3.37e-05)]_4_[+2(2.27e-05)]_\ 19 chr6:28574945-28575025 1.69e-03 54_[+5(6.61e-05)]_18 chr19:45931720-45931800 2.61e-01 80 chr17:8089688-8089768 6.44e-01 80 chrX:1365973-1366053 1.37e-02 12_[+3(5.24e-06)]_60 chr2:70332708-70332788 3.13e-01 80 chr20:45829078-45829158 5.24e-01 80 chr14:50328906-50328986 6.64e-01 80 chr14:31666410-31666490 1.21e-02 80 chr6:27661416-27661496 5.62e-03 38_[+4(4.07e-05)]_34 chr12:102224243-10222432 2.74e-03 1_[+3(1.04e-05)]_60_[+2(6.82e-05)]_\ 3 chr1:182913523-182913603 4.86e-01 80 chr6:26311400-26311480 9.61e-02 80 chr5:55073331-55073411 1.34e-01 80 chr11:67771686-67771766 1.32e-02 7_[+2(9.12e-05)]_19_[+1(8.65e-05)]_\ 38 chr1:55452360-55452440 4.45e-01 80 chr5:140104925-140105005 1.43e-04 16_[+3(1.04e-05)]_1_[+3(5.24e-06)]_\ 47 chr17:76125858-76125938 4.17e-01 80 chr6:26312800-26312880 3.93e-02 34_[+1(4.83e-05)]_38 chr7:150115114-150115194 1.01e-01 80 chr6:27118038-27118118 1.69e-01 80 chr22:50624062-50624142 2.29e-01 80 chr9:132483608-132483688 6.01e-01 80 chr7:148673874-148673954 3.85e-05 24_[+5(1.09e-05)]_7_[+3(5.24e-06)]_\ 33 chr11:118933526-11893360 3.40e-02 80 chr7:54827467-54827547 1.50e-01 80 chr6:27177654-27177734 1.75e-01 80 chr6:27471535-27471615 3.18e-03 36_[+1(1.89e-05)]_36 chr7:148661901-148661981 6.15e-03 42_[+1(8.65e-05)]_2_[+2(2.27e-05)]_\ 20 chr14:102786063-10278614 1.68e-02 13_[+1(1.89e-05)]_59 chr12:53399210-53399290 1.30e-01 30_[+1(8.65e-05)]_42 chr6:121655014-121655094 2.28e-04 29_[+5(1.09e-05)]_7_[+3(5.24e-06)]_\ 28 chr12:125407226-12540730 6.85e-05 36_[+4(8.96e-06)]_25_[+2(6.82e-05)]_\ 3 chr1:161581725-161581805 6.29e-02 21_[+1(4.83e-05)]_51 chr16:3241555-3241635 6.20e-01 80 chr20:44486645-44486725 7.64e-01 80 chr17:8090208-8090288 1.82e-02 34_[+1(1.89e-05)]_38 chr9:139402230-139402310 1.41e-01 80 chr16:8715286-8715366 1.67e-04 20_[+1(1.89e-05)]_52 chr4:2263280-2263360 9.11e-02 38_[+2(6.82e-05)]_34 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chr6:32046314-32046394 8.25e-01 80 chr10:88466872-88466952 3.75e-01 80 chr6:27500013-27500093 1.93e-01 80 chr1:36106599-36106679 3.92e-05 24_[+5(1.09e-05)]_7_[+3(5.24e-06)]_\ 33 chr9:99417950-99418030 2.56e-03 38_[+1(8.65e-05)]_2_[+2(2.27e-05)]_\ 24 chr12:44153487-44153567 1.40e-04 16_[+5(1.09e-05)]_6_[+3(2.90e-05)]_\ 42 chr17:78965492-78965572 2.32e-01 56_[+1(3.37e-05)]_16 chr6:26299919-26299999 6.05e-02 35_[+1(1.89e-05)]_37 chr19:43948770-43948850 9.59e-05 3_[+4(8.96e-06)]_22_[+2(6.82e-05)]_\ 39 chr7:66205093-66205173 1.28e-02 43_[+4(1.80e-05)]_29 chr19:13228834-13228914 2.38e-01 39_[+1(4.83e-05)]_33 chr3:53925267-53925347 1.72e-01 80 chr19:33886078-33886158 1.22e-01 80 chr10:135203846-13520392 1.41e-03 26_[+1(8.65e-05)]_2_[+2(2.27e-05)]_\ 36 chr6:28779845-28779925 1.67e-01 80 chr20:2732999-2733079 1.67e-01 80 chr1:26796823-26796903 2.81e-02 80 chr11:10772001-10772081 3.04e-01 80 chr1:17053792-17053872 1.15e-01 80 chr21:33935410-33935490 2.49e-01 80 chrX:47517911-47517991 1.23e-01 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chr16:85404038-85404118 1.33e-01 80 chr12:117020460-11702054 5.34e-01 80 chr8:67026455-67026535 1.73e-01 80 chr19:4187774-4187854 4.25e-01 80 chr19:13961232-13961312 5.97e-02 80 chr6:27759118-27759198 5.71e-01 80 chr6:27181026-27181106 1.93e-07 6_[+1(8.65e-05)]_2_[+2(2.27e-05)]_\ 21_[+5(1.09e-05)]_6_[+3(2.36e-05)]_13 chr6:26314214-26314294 2.54e-07 23_[+1(1.89e-05)]_2_[+2(2.27e-05)]_\ 21_[+5(1.09e-05)]_10 chr6:26304993-26305073 6.08e-03 80 chr1:17188429-17188509 1.15e-01 80 chr6:27688872-27688952 1.47e-03 14_[+3(4.22e-05)]_14_[+1(1.89e-05)]_\ 36 chr7:129250749-129250829 2.98e-02 29_[+1(8.65e-05)]_43 chr21:9881482-9881562 2.43e-02 39_[+1(7.20e-05)]_33 chr1:222638358-222638438 9.59e-02 38_[+1(8.65e-05)]_34 chr6:28956824-28956904 1.68e-02 80 chr2:26284436-26284516 4.51e-04 30_[+2(6.82e-05)]_42 chr6:28318201-28318281 1.20e-02 80 chr17:73030472-73030552 1.32e-01 80 chr7:101390698-101390778 8.11e-02 80 chr1:153644470-153644550 1.34e-04 19_[+5(1.09e-05)]_7_[+3(5.24e-06)]_\ 38 chr5:1594958-1595038 5.29e-01 80 chr2:24713711-24713791 3.32e-01 80 chr2:196271792-196271872 2.73e-05 19_[+1(8.65e-05)]_2_[+2(2.27e-05)]_\ 27_[+3(5.52e-05)]_8 chr1:150338211-150338291 4.93e-05 33_[+4(8.96e-06)]_39 chr6:27663108-27663188 1.28e-03 40_[+4(8.96e-06)]_21_[+2(6.82e-05)]_\ 3 chr2:70476604-70476684 6.16e-01 80 chr6:26555547-26555627 3.84e-02 66_[+4(3.19e-05)]_6 chr6:27559570-27559650 3.70e-02 80 chr3:57679184-57679264 3.93e-05 20_[+5(1.09e-05)]_9_[+3(5.24e-06)]_\ 35 chr16:3225734-3225814 2.84e-02 7_[+1(1.89e-05)]_65 chr17:30669784-30669864 1.02e-05 1_[+5(1.09e-05)]_9_[+3(5.24e-06)]_\ 54 chr17:8042185-8042265 6.69e-03 24_[+1(4.83e-05)]_48 chr6:28732209-28732289 8.88e-02 80 chr17:80170065-80170145 3.53e-04 72_[+4(8.96e-06)] chr6:28703185-28703265 4.06e-03 69_[+5(2.46e-05)]_3 chr1:16338871-16338951 2.17e-01 80 chr19:17850441-17850521 2.79e-02 26_[+2(9.12e-05)]_46 chr11:925620-925700 7.26e-01 80 chr2:70418500-70418580 8.51e-03 38_[+1(8.65e-05)]_2_[+2(2.27e-05)]_\ 24 chr16:14379775-14379855 3.67e-02 23_[+1(1.89e-05)]_49 chr17:8124864-8124944 7.15e-02 50_[+1(1.89e-05)]_22 chr19:4585706-4585786 4.37e-01 80 chr2:220387290-220387370 1.78e-02 80 chr14:21151462-21151542 1.29e-01 80 chr19:1383300-1383380 7.60e-02 80 chr20:43017341-43017421 9.16e-01 80 chr17:8122076-8122156 2.39e-05 6_[+2(2.27e-05)]_21_[+5(1.09e-05)]_\ [+3(6.05e-05)]_29 chr1:33211949-33212029 4.50e-01 80 chr6:27636378-27636458 1.64e-01 34_[+1(1.89e-05)]_38 chr1:895965-896045 9.70e-01 80 chr7:73098671-73098751 1.77e-04 1_[+2(2.27e-05)]_36_[+3(5.24e-06)]_\ 27 chr6:28911345-28911425 8.67e-04 37_[+3(1.04e-05)]_19_[+1(4.83e-05)]_\ 8 chr6:28775602-28775682 1.21e-01 80 chr5:140092118-140092198 6.47e-05 26_[+4(2.49e-05)]_28_[+1(3.37e-05)]_\ 10 chr7:148682769-148682849 1.10e-04 30_[+1(8.65e-05)]_2_[+2(2.27e-05)]_\ 21_[+5(3.82e-05)]_3 chr6:134578197-134578277 3.61e-01 80 chr19:4724621-4724701 3.98e-02 80 chr2:135208556-135208636 4.96e-01 80 chr6:27509531-27509611 6.53e-02 33_[+1(4.83e-05)]_39 chr15:52311969-52312049 6.90e-01 80 chr11:59319258-59319338 9.30e-03 29_[+1(1.89e-05)]_43 chr12:112278741-11227882 7.14e-02 80 chr17:1732677-1732757 6.85e-01 80 chr7:140176587-140176667 3.79e-01 80 chr19:2474407-2474487 2.07e-02 80 chr19:1905082-1905162 1.45e-02 55_[+1(4.83e-05)]_17 chr7:75849600-75849680 4.78e-01 80 chr17:8023570-8023650 1.37e-05 55_[+2(2.27e-05)]_9_[+1(4.83e-05)] chr17:37025532-37025612 1.50e-02 61_[+5(2.46e-05)]_11 chr1:149298554-149298634 4.46e-02 80 chr19:30277272-30277352 8.18e-01 80 chr18:9138276-9138356 1.23e-06 26_[+1(8.65e-05)]_2_[+2(2.27e-05)]_\ 22_[+5(1.09e-05)]_6 chr6:26328363-26328443 3.09e-02 80 chr9:37467687-37467767 9.63e-04 30_[+1(8.65e-05)]_2_[+2(2.27e-05)]_\ 32 chr1:31228354-31228434 1.88e-01 80 chr6:28757493-28757573 2.13e-03 27_[+5(7.96e-05)]_45 chr11:2187428-2187508 3.32e-01 80 chr6:27515529-27515609 6.20e-01 80 chr6:26311953-26312033 9.61e-02 80 chr17:76137706-76137786 1.35e-01 80 chr11:66140092-66140172 2.05e-03 67_[+2(6.82e-05)]_5 chr12:56583413-56583493 4.76e-01 80 chr3:135969016-135969096 1.13e-01 80 chr16:27367139-27367219 9.30e-01 80 chr19:40921860-40921940 2.76e-02 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n08.farnam.hpc.yale.internal ********************************************************************************