******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/GTF2A2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:153686491-153686571 1.0000 80 chr6:29782981-29783061 1.0000 80 chr16:88851593-88851673 1.0000 80 chr6:112668545-112668625 1.0000 80 chr5:121215683-121215763 1.0000 80 chr2:34119611-34119691 1.0000 80 chr19:5352448-5352528 1.0000 80 chr6:70320240-70320320 1.0000 80 chr1:17222321-17222401 1.0000 80 chr12:9517121-9517201 1.0000 80 chrX:132017533-132017613 1.0000 80 chr19:4969297-4969377 1.0000 80 chr19:4969093-4969173 1.0000 80 chr7:138040133-138040213 1.0000 80 chr7:138048624-138048704 1.0000 80 chr17:79008977-79009057 1.0000 80 chr11:61266524-61266604 1.0000 80 chr6:49690249-49690329 1.0000 80 chr20:60641162-60641242 1.0000 80 chr1:149783843-149783923 1.0000 80 chr6:41260582-41260662 1.0000 80 chr10:12486247-12486327 1.0000 80 chr2:108972696-108972776 1.0000 80 chr10:26051023-26051103 1.0000 80 chr7:71101034-71101114 1.0000 80 chr11:9025461-9025541 1.0000 80 chr11:121097190-12109727 1.0000 80 chr1:204136265-204136345 1.0000 80 chr1:147994004-147994084 1.0000 80 chr7:121184352-121184432 1.0000 80 chrX:47668980-47669060 1.0000 80 chr19:21803936-21804016 1.0000 80 chr1:68388890-68388970 1.0000 80 chr11:1372861-1372941 1.0000 80 chr7:2913651-2913731 1.0000 80 chr19:33793346-33793426 1.0000 80 chr16:50528586-50528666 1.0000 80 chr6:14709668-14709748 1.0000 80 chr3:125919541-125919621 1.0000 80 chr5:85868838-85868918 1.0000 80 chr2:30884089-30884169 1.0000 80 chr10:23344857-23344937 1.0000 80 chr2:131966815-131966895 1.0000 80 chr19:14116662-14116742 1.0000 80 chr2:152100183-152100263 1.0000 80 chr1:142886562-142886642 1.0000 80 chrX:99866291-99866371 1.0000 80 chr11:12400877-12400957 1.0000 80 chr12:15077597-15077677 1.0000 80 chr3:129035345-129035425 1.0000 80 chr10:17134316-17134396 1.0000 80 chr5:31362457-31362537 1.0000 80 chr1:89636328-89636408 1.0000 80 chr1:234397437-234397517 1.0000 80 chr1:36482414-36482494 1.0000 80 chr8:30060534-30060614 1.0000 80 chr22:50354358-50354438 1.0000 80 chr2:30454411-30454491 1.0000 80 chr3:151393783-151393863 1.0000 80 chr7:128540904-128540984 1.0000 80 chr7:137899841-137899921 1.0000 80 chr1:185310659-185310739 1.0000 80 chr7:123633149-123633229 1.0000 80 chr3:171695381-171695461 1.0000 80 chr11:20222017-20222097 1.0000 80 chr2:46981218-46981298 1.0000 80 chr16:89989758-89989838 1.0000 80 chr21:19062522-19062602 1.0000 80 chr5:57677980-57678060 1.0000 80 chr18:9874914-9874994 1.0000 80 chr6:86144959-86145039 1.0000 80 chr6:52569734-52569814 1.0000 80 chr2:103039956-103040036 1.0000 80 chr8:125828019-125828099 1.0000 80 chr5:42811964-42812044 1.0000 80 chr6:161632042-161632122 1.0000 80 chr11:74699688-74699768 1.0000 80 chr1:62332836-62332916 1.0000 80 chr7:137031008-137031088 1.0000 80 chr10:104215021-10421510 1.0000 80 chr7:13889178-13889258 1.0000 80 chr7:29834743-29834823 1.0000 80 chr2:146611772-146611852 1.0000 80 chr6:79967404-79967484 1.0000 80 chr2:113551263-113551343 1.0000 80 chr17:7554266-7554346 1.0000 80 chr4:165972059-165972139 1.0000 80 chr7:24818186-24818266 1.0000 80 chr7:137944561-137944641 1.0000 80 chr12:77272711-77272791 1.0000 80 chr1:185509569-185509649 1.0000 80 chr9:79052087-79052167 1.0000 80 chr2:196372715-196372795 1.0000 80 chr1:55417646-55417726 1.0000 80 chr6:86082477-86082557 1.0000 80 chr8:29474716-29474796 1.0000 80 chr6:36852529-36852609 1.0000 80 chr11:3530988-3531068 1.0000 80 chr17:41393178-41393258 1.0000 80 chr4:31998996-31999076 1.0000 80 chr5:95043462-95043542 1.0000 80 chr7:28865549-28865629 1.0000 80 chr15:39692357-39692437 1.0000 80 chr1:161527711-161527791 1.0000 80 chr7:75473141-75473221 1.0000 80 chr15:51871302-51871382 1.0000 80 chr7:105987882-105987962 1.0000 80 chr1:173443576-173443656 1.0000 80 chr1:95396964-95397044 1.0000 80 chr5:2156633-2156713 1.0000 80 chr7:137998678-137998758 1.0000 80 chr18:29277675-29277755 1.0000 80 chr20:1182792-1182872 1.0000 80 chr7:64682259-64682339 1.0000 80 chr3:111199151-111199231 1.0000 80 chr4:100656058-100656138 1.0000 80 chr7:138035001-138035081 1.0000 80 chr19:51640461-51640541 1.0000 80 chr1:207779117-207779197 1.0000 80 chr1:113360334-113360414 1.0000 80 chr1:223972443-223972523 1.0000 80 chr18:1049370-1049450 1.0000 80 chr2:10416230-10416310 1.0000 80 chr12:121581304-12158138 1.0000 80 chr6:20203922-20204002 1.0000 80 chr1:228645791-228645871 1.0000 80 chr14:32490185-32490265 1.0000 80 chr4:38319046-38319126 1.0000 80 chr1:210547632-210547712 1.0000 80 chr21:31015094-31015174 1.0000 80 chr5:132575681-132575761 1.0000 80 chr2:130076233-130076313 1.0000 80 chr10:14227391-14227471 1.0000 80 chr2:152899154-152899234 1.0000 80 chr16:26996543-26996623 1.0000 80 chr1:95078559-95078639 1.0000 80 chr1:185862149-185862229 1.0000 80 chr8:125461688-125461768 1.0000 80 chr3:14293111-14293191 1.0000 80 chr17:20771783-20771863 1.0000 80 chr7:99277140-99277220 1.0000 80 chr6:159133055-159133135 1.0000 80 chr6:137492084-137492164 1.0000 80 chr22:28985250-28985330 1.0000 80 chr3:129035145-129035225 1.0000 80 chr11:125431941-12543202 1.0000 80 chr19:29019575-29019655 1.0000 80 chr17:79009178-79009258 1.0000 80 chr6:169486226-169486306 1.0000 80 chr1:223079675-223079755 1.0000 80 chr2:133046572-133046652 1.0000 80 chr12:92028708-92028788 1.0000 80 chr20:62152121-62152201 1.0000 80 chr4:186218366-186218446 1.0000 80 chr4:138889190-138889270 1.0000 80 chr7:123139784-123139864 1.0000 80 chr3:39363821-39363901 1.0000 80 chr6:10750895-10750975 1.0000 80 chr5:16528496-16528576 1.0000 80 chr1:244325673-244325753 1.0000 80 chr10:16933786-16933866 1.0000 80 chr1:236451658-236451738 1.0000 80 chr22:21011447-21011527 1.0000 80 chrX:2467647-2467727 1.0000 80 chr7:32579139-32579219 1.0000 80 chr10:45474186-45474266 1.0000 80 chr14:90863327-90863407 1.0000 80 chr19:54020396-54020476 1.0000 80 chr5:156705804-156705884 1.0000 80 chr5:107757643-107757723 1.0000 80 chr19:39897497-39897577 1.0000 80 chr17:21515823-21515903 1.0000 80 chr7:25967369-25967449 1.0000 80 chr6:164361877-164361957 1.0000 80 chr1:103120716-103120796 1.0000 80 chr9:110438221-110438301 1.0000 80 chr1:162465819-162465899 1.0000 80 chr1:175379737-175379817 1.0000 80 chr7:54746614-54746694 1.0000 80 chr6:15211356-15211436 1.0000 80 chr17:75084102-75084182 1.0000 80 chr7:106437344-106437424 1.0000 80 chr11:117997119-11799719 1.0000 80 chr3:32090136-32090216 1.0000 80 chr5:89936405-89936485 1.0000 80 chr18:33460976-33461056 1.0000 80 chr11:64937677-64937757 1.0000 80 chr12:58241039-58241119 1.0000 80 chr10:13580037-13580117 1.0000 80 chr11:67981165-67981245 1.0000 80 chr6:158235246-158235326 1.0000 80 chr3:176065753-176065833 1.0000 80 chr6:10662504-10662584 1.0000 80 chr2:113403515-113403595 1.0000 80 chr11:86648381-86648461 1.0000 80 chr15:35286226-35286306 1.0000 80 chr2:135576172-135576252 1.0000 80 chr3:70048863-70048943 1.0000 80 chr7:75431152-75431232 1.0000 80 chr19:15936733-15936813 1.0000 80 chr2:156087912-156087992 1.0000 80 chr17:41400261-41400341 1.0000 80 chr6:27114542-27114622 1.0000 80 chr7:137908438-137908518 1.0000 80 chrX:55137295-55137375 1.0000 80 chr2:87816019-87816099 1.0000 80 chr19:45971196-45971276 1.0000 80 chr6:30783208-30783288 1.0000 80 chr4:128551476-128551556 1.0000 80 chr12:116994337-11699441 1.0000 80 chr7:92778252-92778332 1.0000 80 chr12:121455835-12145591 1.0000 80 chr3:155579713-155579793 1.0000 80 chr8:29217298-29217378 1.0000 80 chr1:222135905-222135985 1.0000 80 chr21:9652255-9652335 1.0000 80 chr2:12697963-12698043 1.0000 80 chr3:9686037-9686117 1.0000 80 chr22:21011190-21011270 1.0000 80 chr3:44482969-44483049 1.0000 80 chr1:143121252-143121332 1.0000 80 chr17:25435130-25435210 1.0000 80 chr22:21996951-21997031 1.0000 80 chr7:121156432-121156512 1.0000 80 chr13:61158248-61158328 1.0000 80 chr1:33546777-33546857 1.0000 80 chr6:134612431-134612511 1.0000 80 chr3:44479481-44479561 1.0000 80 chr7:14040932-14041012 1.0000 80 chr1:23807549-23807629 1.0000 80 chr1:18748633-18748713 1.0000 80 chr2:125751511-125751591 1.0000 80 chr6:137692516-137692596 1.0000 80 chr5:70694853-70694933 1.0000 80 chr5:67924040-67924120 1.0000 80 chr1:36864291-36864371 1.0000 80 chr2:158103721-158103801 1.0000 80 chr1:227038609-227038689 1.0000 80 chr6:31795530-31795610 1.0000 80 chr19:18476564-18476644 1.0000 80 chr4:154458993-154459073 1.0000 80 chr19:52290318-52290398 1.0000 80 chr7:142411588-142411668 1.0000 80 chr6:158176286-158176366 1.0000 80 chr8:130091083-130091163 1.0000 80 chr1:31611914-31611994 1.0000 80 chr5:138882861-138882941 1.0000 80 chr8:101734241-101734321 1.0000 80 chr6:16236417-16236497 1.0000 80 chr3:5037103-5037183 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_GTF2A2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/GTF2A2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.258 C 0.238 G 0.246 T 0.258 Background letter frequencies (from file dataset with add-one prior applied): A 0.258 C 0.238 G 0.246 T 0.258 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CTCCATCT MEME-1 width = 8 sites = 68 llr = 666 E-value = 1.7e-082 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTCCATCT MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::::a::: pos.-specific C a:aa::7: probability G :::::::: matrix T :a:::a3a bits 2.1 ** 1.9 * ** * * 1.7 ****** * 1.5 ****** * Relative 1.2 ****** * Entropy 1.0 ******** (14.1 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTCCATCT consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCATCT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:142411588-142411668 44 1.42e-05 accacagcaa ctccatct taaataggag chr1:227038609-227038689 53 1.42e-05 accagagcaa ctccatct tgaataagag chr5:70694853-70694933 54 1.42e-05 accacagcaa ctccatct tgagtagggg chr2:125751511-125751591 52 1.42e-05 accagagcaa ctccatct tgaacagtga chr1:18748633-18748713 67 1.42e-05 acaagagtga ctccatct tgaata chr8:29217298-29217378 36 1.42e-05 accagagcaa ctccatct taactcggag chr7:75431152-75431232 54 1.42e-05 accagagtga ctccatct tgaataggag chr11:86648381-86648461 52 1.42e-05 accagagcaa ctccatct tgagtagggg chr6:10662504-10662584 58 1.42e-05 accagagcga ctccatct tgaatagggg chr10:13580037-13580117 31 1.42e-05 accagatcga ctccatct tgaatgggag chr7:54746614-54746694 54 1.42e-05 accagagcaa ctccatct tgaataagag chr1:103120716-103120796 36 1.42e-05 accagagcta ctccatct tgaataggtg chr6:164361877-164361957 43 1.42e-05 accagagcga ctccatct tgaacggggg chr7:123139784-123139864 49 1.42e-05 accagagcaa ctccatct tgaataggag chr1:223079675-223079755 60 1.42e-05 accagagcaa ctccatct taaatagggg chr6:169486226-169486306 54 1.42e-05 accagagcaa ctccatct tgaatacgcc chr19:29019575-29019655 9 1.42e-05 cagaacaa ctccatct tgaataggag chr1:95078559-95078639 4 1.42e-05 caa ctccatct taaataagag chr16:26996543-26996623 65 1.42e-05 accagagcaa ctccatct gctatagg chr4:38319046-38319126 44 1.42e-05 accagagcaa ctccatct tgaatagggg chr20:1182792-1182872 58 1.42e-05 accagagtaa ctccatct tgaatagggg chr5:2156633-2156713 58 1.42e-05 gccagagtga ctccatct tgaatagggg chr1:95396964-95397044 28 1.42e-05 accaaagcaa ctccatct tgaatagggg chr1:161527711-161527791 27 1.42e-05 acataactaa ctccatct tagaaaaaga chr7:28865549-28865629 55 1.42e-05 accagagcaa ctccatct tgaataggag chr8:29474716-29474796 66 1.42e-05 accagagcaa ctccatct tgaatag chr9:79052087-79052167 21 1.42e-05 acaagagcaa ctccatct tgaataggag chr7:137944561-137944641 33 1.42e-05 acatggctga ctccatct tgcttctagc chr2:146611772-146611852 40 1.42e-05 accagagtaa ctccatct tgaatagggg chr6:52569734-52569814 36 1.42e-05 accagagcaa ctccatct tgaatagggg chr21:19062522-19062602 62 1.42e-05 actagagtga ctccatct tgaatggggg chr11:20222017-20222097 54 1.42e-05 accagagcaa ctccatct taagtaggag chr7:128540904-128540984 59 1.42e-05 accagagcaa ctccatct taaataggag chr3:151393783-151393863 26 1.42e-05 acctaactaa ctccatct tgcttctagc chr10:17134316-17134396 67 1.42e-05 accagagcaa ctccatct tgaata chr12:15077597-15077677 49 1.42e-05 gccagagcaa ctccatct tgaatagggg chr16:50528586-50528666 40 1.42e-05 accagcccaa ctccatct tgaatagggg chrX:132017533-132017613 68 1.42e-05 acataagtaa ctccatct tagaa chr8:130091083-130091163 52 2.96e-05 gcatgagtga ctccattt tggtctggtc chr5:67924040-67924120 57 2.96e-05 accagagcaa ctccattt tgaatagaag chr1:143121252-143121332 8 2.96e-05 tgagtga ctccattt tggcttggtt chr21:9652255-9652335 13 2.96e-05 gcatgagtga ctccattt tggtttggtt chr1:222135905-222135985 39 2.96e-05 gcatgggtga ctccattt tgatttttag chr12:121455835-12145591 38 2.96e-05 acataagtga ctccattt tgatactgat chr7:92778252-92778332 58 2.96e-05 accagagtga ctccattt tgaatgaggg chr2:135576172-135576252 8 2.96e-05 caagcga ctccattt tgcttctgac chr3:32090136-32090216 72 2.96e-05 accagagcaa ctccattt t chr7:64682259-64682339 17 2.96e-05 gcatgagtga ctccattt tggtttggtt chr1:173443576-173443656 55 2.96e-05 acataagaaa ctccattt tgttctgaac chr15:39692357-39692437 23 2.96e-05 gcttgagtga ctccattt tggttggtct chr6:86144959-86145039 64 2.96e-05 accaaagcaa ctccattt taataggag chr1:185310659-185310739 61 2.96e-05 gcatgagtga ctccattt tggtttggtc chr7:137899841-137899921 40 2.96e-05 gcatgaatga ctccattt tggtttggtt chr1:36482414-36482494 53 2.96e-05 gcatgagtga ctccattt tggtttggta chr1:68388890-68388970 47 2.96e-05 gcaagagtga ctccattt tgtttaggtc chr1:204136265-204136345 44 2.96e-05 gcatgactga ctccattt tgcctctgac chr7:138048624-138048704 51 2.96e-05 gcatgactga ctccattt tggtttggtt chr6:158176286-158176366 69 4.27e-05 GGGAGAAATT CTCCCTCT CAGC chr7:137908438-137908518 29 5.82e-05 caatggaaaa ttccatct cctgacacgt chr1:55417646-55417726 68 5.82e-05 accagagcaa ttccatct tgaat chr7:24818186-24818266 58 5.82e-05 gacatgcagg ttccatct tggggcatga chrX:55137295-55137375 48 7.13e-05 accagaacta ccccatct tgaattggag chr7:106437344-106437424 56 8.55e-05 catttccccc ctcccttt tataagagca chrX:47668980-47669060 46 8.55e-05 aTAttccccc ctcccttt tacaagggaa chr3:125919541-125919621 36 1.01e-04 gcatgagtga ctccatat tggcttggtc chr19:51640461-51640541 51 1.31e-04 GACATGGTGC CTCCATCC CCCACCCCCG chr2:87816019-87816099 63 1.59e-04 acgtaagtga caccatct tagaaaaaga chr7:138040133-138040213 16 1.59e-04 tagagtggga ccccattt caaacaaaaa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCATCT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:142411588-142411668 1.4e-05 43_[+1]_29 chr1:227038609-227038689 1.4e-05 52_[+1]_20 chr5:70694853-70694933 1.4e-05 53_[+1]_19 chr2:125751511-125751591 1.4e-05 51_[+1]_21 chr1:18748633-18748713 1.4e-05 66_[+1]_6 chr8:29217298-29217378 1.4e-05 35_[+1]_37 chr7:75431152-75431232 1.4e-05 53_[+1]_19 chr11:86648381-86648461 1.4e-05 51_[+1]_21 chr6:10662504-10662584 1.4e-05 57_[+1]_15 chr10:13580037-13580117 1.4e-05 30_[+1]_42 chr7:54746614-54746694 1.4e-05 53_[+1]_19 chr1:103120716-103120796 1.4e-05 35_[+1]_37 chr6:164361877-164361957 1.4e-05 42_[+1]_30 chr7:123139784-123139864 1.4e-05 48_[+1]_24 chr1:223079675-223079755 1.4e-05 59_[+1]_13 chr6:169486226-169486306 1.4e-05 53_[+1]_19 chr19:29019575-29019655 1.4e-05 8_[+1]_64 chr1:95078559-95078639 1.4e-05 3_[+1]_69 chr16:26996543-26996623 1.4e-05 64_[+1]_8 chr4:38319046-38319126 1.4e-05 43_[+1]_29 chr20:1182792-1182872 1.4e-05 57_[+1]_15 chr5:2156633-2156713 1.4e-05 57_[+1]_15 chr1:95396964-95397044 1.4e-05 27_[+1]_45 chr1:161527711-161527791 1.4e-05 26_[+1]_46 chr7:28865549-28865629 1.4e-05 54_[+1]_18 chr8:29474716-29474796 1.4e-05 65_[+1]_7 chr9:79052087-79052167 1.4e-05 20_[+1]_52 chr7:137944561-137944641 1.4e-05 32_[+1]_40 chr2:146611772-146611852 1.4e-05 39_[+1]_33 chr6:52569734-52569814 1.4e-05 35_[+1]_37 chr21:19062522-19062602 1.4e-05 61_[+1]_11 chr11:20222017-20222097 1.4e-05 53_[+1]_19 chr7:128540904-128540984 1.4e-05 58_[+1]_14 chr3:151393783-151393863 1.4e-05 25_[+1]_47 chr10:17134316-17134396 1.4e-05 66_[+1]_6 chr12:15077597-15077677 1.4e-05 48_[+1]_24 chr16:50528586-50528666 1.4e-05 39_[+1]_33 chrX:132017533-132017613 1.4e-05 67_[+1]_5 chr8:130091083-130091163 3e-05 51_[+1]_21 chr5:67924040-67924120 3e-05 56_[+1]_16 chr1:143121252-143121332 3e-05 7_[+1]_65 chr21:9652255-9652335 3e-05 12_[+1]_60 chr1:222135905-222135985 3e-05 38_[+1]_34 chr12:121455835-12145591 3e-05 37_[+1]_35 chr7:92778252-92778332 3e-05 57_[+1]_15 chr2:135576172-135576252 3e-05 7_[+1]_65 chr3:32090136-32090216 3e-05 71_[+1]_1 chr7:64682259-64682339 3e-05 16_[+1]_56 chr1:173443576-173443656 3e-05 54_[+1]_18 chr15:39692357-39692437 3e-05 22_[+1]_50 chr6:86144959-86145039 3e-05 63_[+1]_9 chr1:185310659-185310739 3e-05 60_[+1]_12 chr7:137899841-137899921 3e-05 39_[+1]_33 chr1:36482414-36482494 3e-05 52_[+1]_20 chr1:68388890-68388970 3e-05 46_[+1]_26 chr1:204136265-204136345 3e-05 43_[+1]_29 chr7:138048624-138048704 3e-05 50_[+1]_22 chr6:158176286-158176366 4.3e-05 68_[+1]_4 chr7:137908438-137908518 5.8e-05 28_[+1]_44 chr1:55417646-55417726 5.8e-05 67_[+1]_5 chr7:24818186-24818266 5.8e-05 57_[+1]_15 chrX:55137295-55137375 7.1e-05 47_[+1]_25 chr7:106437344-106437424 8.5e-05 55_[+1]_17 chrX:47668980-47669060 8.5e-05 45_[+1]_27 chr3:125919541-125919621 0.0001 35_[+1]_37 chr19:51640461-51640541 0.00013 50_[+1]_22 chr2:87816019-87816099 0.00016 62_[+1]_10 chr7:138040133-138040213 0.00016 15_[+1]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCATCT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTCCATCT width=8 seqs=68 chr7:142411588-142411668 ( 44) CTCCATCT 1 chr1:227038609-227038689 ( 53) CTCCATCT 1 chr5:70694853-70694933 ( 54) CTCCATCT 1 chr2:125751511-125751591 ( 52) CTCCATCT 1 chr1:18748633-18748713 ( 67) CTCCATCT 1 chr8:29217298-29217378 ( 36) CTCCATCT 1 chr7:75431152-75431232 ( 54) CTCCATCT 1 chr11:86648381-86648461 ( 52) CTCCATCT 1 chr6:10662504-10662584 ( 58) CTCCATCT 1 chr10:13580037-13580117 ( 31) CTCCATCT 1 chr7:54746614-54746694 ( 54) CTCCATCT 1 chr1:103120716-103120796 ( 36) CTCCATCT 1 chr6:164361877-164361957 ( 43) CTCCATCT 1 chr7:123139784-123139864 ( 49) CTCCATCT 1 chr1:223079675-223079755 ( 60) CTCCATCT 1 chr6:169486226-169486306 ( 54) CTCCATCT 1 chr19:29019575-29019655 ( 9) CTCCATCT 1 chr1:95078559-95078639 ( 4) CTCCATCT 1 chr16:26996543-26996623 ( 65) CTCCATCT 1 chr4:38319046-38319126 ( 44) CTCCATCT 1 chr20:1182792-1182872 ( 58) CTCCATCT 1 chr5:2156633-2156713 ( 58) CTCCATCT 1 chr1:95396964-95397044 ( 28) CTCCATCT 1 chr1:161527711-161527791 ( 27) CTCCATCT 1 chr7:28865549-28865629 ( 55) CTCCATCT 1 chr8:29474716-29474796 ( 66) CTCCATCT 1 chr9:79052087-79052167 ( 21) CTCCATCT 1 chr7:137944561-137944641 ( 33) CTCCATCT 1 chr2:146611772-146611852 ( 40) CTCCATCT 1 chr6:52569734-52569814 ( 36) CTCCATCT 1 chr21:19062522-19062602 ( 62) CTCCATCT 1 chr11:20222017-20222097 ( 54) CTCCATCT 1 chr7:128540904-128540984 ( 59) CTCCATCT 1 chr3:151393783-151393863 ( 26) CTCCATCT 1 chr10:17134316-17134396 ( 67) CTCCATCT 1 chr12:15077597-15077677 ( 49) CTCCATCT 1 chr16:50528586-50528666 ( 40) CTCCATCT 1 chrX:132017533-132017613 ( 68) CTCCATCT 1 chr8:130091083-130091163 ( 52) CTCCATTT 1 chr5:67924040-67924120 ( 57) CTCCATTT 1 chr1:143121252-143121332 ( 8) CTCCATTT 1 chr21:9652255-9652335 ( 13) CTCCATTT 1 chr1:222135905-222135985 ( 39) CTCCATTT 1 chr12:121455835-12145591 ( 38) CTCCATTT 1 chr7:92778252-92778332 ( 58) CTCCATTT 1 chr2:135576172-135576252 ( 8) CTCCATTT 1 chr3:32090136-32090216 ( 72) CTCCATTT 1 chr7:64682259-64682339 ( 17) CTCCATTT 1 chr1:173443576-173443656 ( 55) CTCCATTT 1 chr15:39692357-39692437 ( 23) CTCCATTT 1 chr6:86144959-86145039 ( 64) CTCCATTT 1 chr1:185310659-185310739 ( 61) CTCCATTT 1 chr7:137899841-137899921 ( 40) CTCCATTT 1 chr1:36482414-36482494 ( 53) CTCCATTT 1 chr1:68388890-68388970 ( 47) CTCCATTT 1 chr1:204136265-204136345 ( 44) CTCCATTT 1 chr7:138048624-138048704 ( 51) CTCCATTT 1 chr6:158176286-158176366 ( 69) CTCCCTCT 1 chr7:137908438-137908518 ( 29) TTCCATCT 1 chr1:55417646-55417726 ( 68) TTCCATCT 1 chr7:24818186-24818266 ( 58) TTCCATCT 1 chrX:55137295-55137375 ( 48) CCCCATCT 1 chr7:106437344-106437424 ( 56) CTCCCTTT 1 chrX:47668980-47669060 ( 46) CTCCCTTT 1 chr3:125919541-125919621 ( 36) CTCCATAT 1 chr19:51640461-51640541 ( 51) CTCCATCC 1 chr2:87816019-87816099 ( 63) CACCATCT 1 chr7:138040133-138040213 ( 16) CCCCATTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCATCT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.85972 E= 1.7e-082 -1273 201 -1273 -255 -413 -301 -1273 189 -1273 207 -1273 -1273 -1273 207 -1273 -1273 189 -243 -1273 -1273 -1273 -1273 -1273 195 -413 148 -1273 33 -1273 -401 -1273 193 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCATCT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 68 E= 1.7e-082 0.000000 0.955882 0.000000 0.044118 0.014706 0.029412 0.000000 0.955882 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.955882 0.044118 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.014706 0.661765 0.000000 0.323529 0.000000 0.014706 0.000000 0.985294 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCATCT MEME-1 regular expression -------------------------------------------------------------------------------- CTCCAT[CT]T -------------------------------------------------------------------------------- Time 4.92 secs. ******************************************************************************** ******************************************************************************** MOTIF ATGGAGTY MEME-2 width = 8 sites = 66 llr = 633 E-value = 4.0e-073 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATGGAGTY MEME-2 Description -------------------------------------------------------------------------------- Simplified A a:::a::: pos.-specific C :::::::6 probability G ::aa:a:: matrix T :a::::a4 bits 2.1 ** 1.9 **** 1.7 ******* 1.5 ******* Relative 1.2 ******* Entropy 1.0 ******* (13.8 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ATGGAGTC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGAGTY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:16236417-16236497 34 1.57e-05 taaaagcaag atggagtc agttaggtca chr1:36864291-36864371 35 1.57e-05 cagaaccaaa atggagtc actcatgcta chr6:134612431-134612511 61 1.57e-05 aaaaatcaaa atggagtc acctatgcta chr3:44482969-44483049 20 1.57e-05 cctattcaag atggagtc actctggttc chr2:12697963-12698043 25 1.57e-05 cctactcaag atggagtc actctggttc chr4:128551476-128551556 53 1.57e-05 cctattcaag atggagtc gctctggttc chr19:15936733-15936813 16 1.57e-05 acaaaccaaa atggagtc actcaggcta chr15:35286226-35286306 3 1.57e-05 ag atggagtc gattaggtca chr9:110438221-110438301 30 1.57e-05 cctattcaag atggagtc actctggttc chr5:156705804-156705884 42 1.57e-05 ccaaatcaaa atggagtc actcatgcta chr7:32579139-32579219 37 1.57e-05 tttattcaag atggagtc actctggtta chr6:10750895-10750975 61 1.57e-05 aagagccaag atggagtc tgtctggctc chr22:28985250-28985330 39 1.57e-05 ccaaacagaa atggagtc actcatgttt chr3:14293111-14293191 34 1.57e-05 tagaagcaag atggagtc aattatgtca chr8:125461688-125461768 51 1.57e-05 tttattcaag atggagtc actctggttt chr6:20203922-20204002 53 1.57e-05 ccaaaccaga atggagtc actgatgcca chr2:10416230-10416310 59 1.57e-05 gctattcaag atggagtc actctggttt chr1:113360334-113360414 21 1.57e-05 ctttttcaaa atggagtc tcttatgtct chr7:75473141-75473221 40 1.57e-05 ctcactcaag atggagtc actctggttc chr5:95043462-95043542 7 1.57e-05 gccaag atggagtc tgtctggctc chr11:3530988-3531068 21 1.57e-05 aagagccaag atggagtc tgtctggctc chr6:36852529-36852609 32 1.57e-05 ccaaactaaa atggagtc actcatgcta chr6:86082477-86082557 3 1.57e-05 aa atggagtc actcatgcta chr2:196372715-196372795 19 1.57e-05 tacagacaag atggagtc agccatgtca chr6:161632042-161632122 55 1.57e-05 aaaaagcaag atggagtc agttacgtca chr7:123633149-123633229 34 1.57e-05 cctattcaag atggagtc actctggttc chr8:30060534-30060614 4 1.57e-05 aaa atggagtc tttttctaag chr1:234397437-234397517 31 1.57e-05 tctattcaaa atggagtc actcttgttc chr1:89636328-89636408 63 1.57e-05 ccctaacaaa atggagtc aggagttcat chr1:142886562-142886642 29 1.57e-05 ccaaaccaaa atggagtc actcatgcta chr19:21803936-21804016 36 1.57e-05 ctttttcaaa atggagtc ccttatgtct chr7:71101034-71101114 25 1.57e-05 cctattcaag atggagtc actctggttc chr1:31611914-31611994 53 3.27e-05 cctattcaag atggagtt gctctggttc chr6:158176286-158176366 25 3.27e-05 tgtattcaag atggagtt gctctggttc chr7:14040932-14041012 6 3.27e-05 TAaaa atggagtt actcatgcta chr3:44479481-44479561 45 3.27e-05 cctattcaac atggagtt gctctcgttc chr3:9686037-9686117 48 3.27e-05 Aagaagcaag atggagtt ggttaggtca chr12:116994337-11699441 17 3.27e-05 cctattcaag atggagtt gctcttgttc chr7:106437344-106437424 18 3.27e-05 tctattcaag atggagtt gctccagttc chr1:244325673-244325753 58 3.27e-05 cctattcaag atggagtt gctctggttc chr11:125431941-12543202 53 3.27e-05 ccaaaccaaa atggagtt actcatgcta chr6:159133055-159133135 24 3.27e-05 cctattcaag atggagtt gctgtggttc chr18:29277675-29277755 7 3.27e-05 aacaaa atggagtt agtcacgcta chr1:185509569-185509649 60 3.27e-05 cctattcaag atggagtt gctctggttc chr7:29834743-29834823 37 3.27e-05 cctattcaag atggagtt gctctggttc chr1:62332836-62332916 36 3.27e-05 gctattcaag atggagtt gctctggttc chr11:12400877-12400957 22 3.27e-05 cccattcaag atggagtt gctctggttc chrX:99866291-99866371 39 3.27e-05 cctattcaag atggagtt gctctggttc chrX:47668980-47669060 5 3.27e-05 caag atggagtt actctggttc chr7:121184352-121184432 49 3.27e-05 ccaaattata atggagtt acttgggcta chr10:26051023-26051103 20 3.27e-05 cctattcaag atggagtt gctgtggttc chr10:12486247-12486327 42 3.27e-05 cctattcaag atggagtt gctctggttc chr6:41260582-41260662 47 3.27e-05 cctattcaag atggagtt gctctggttc chr6:49690249-49690329 27 3.27e-05 cttatttaag atggagtt tctctggttc chr5:121215683-121215763 48 3.27e-05 cctattcaag atggagtt gctctggttc chr17:25435130-25435210 45 4.97e-05 taaaggcaag atggagta ggttaggtca chr7:137908438-137908518 71 4.97e-05 atgacacaat atggagta ac chr5:89936405-89936485 7 7.97e-05 CTGGCC ATGGGGTC ATCTTCCATA chr7:25967369-25967449 62 7.97e-05 atgatccaag atggaggc aattatgttc chr1:223972443-223972523 31 7.97e-05 AGAAAAAAAG ATGGAGGC ACAATGGTCT chr2:158103721-158103801 2 9.61e-05 a atggaatc actcgtgcta chr2:46981218-46981298 39 1.29e-04 cctattcaag atggggtt gctctggttc chr12:77272711-77272791 72 1.61e-04 GGGAGGGTCC AGGGAGTC C chr10:23344857-23344937 6 1.61e-04 CCTAG ATGGAATT TACCCTTTGT chr4:154458993-154459073 49 1.92e-04 GTTATATCTG ATGGACTC CTTTCTCCCT chr5:57677980-57678060 45 2.42e-04 aaatatgtta atggtgtt tgaaccagag -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGAGTY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:16236417-16236497 1.6e-05 33_[+2]_39 chr1:36864291-36864371 1.6e-05 34_[+2]_38 chr6:134612431-134612511 1.6e-05 60_[+2]_12 chr3:44482969-44483049 1.6e-05 19_[+2]_53 chr2:12697963-12698043 1.6e-05 24_[+2]_48 chr4:128551476-128551556 1.6e-05 52_[+2]_20 chr19:15936733-15936813 1.6e-05 15_[+2]_57 chr15:35286226-35286306 1.6e-05 2_[+2]_70 chr9:110438221-110438301 1.6e-05 29_[+2]_43 chr5:156705804-156705884 1.6e-05 41_[+2]_31 chr7:32579139-32579219 1.6e-05 36_[+2]_36 chr6:10750895-10750975 1.6e-05 60_[+2]_12 chr22:28985250-28985330 1.6e-05 38_[+2]_34 chr3:14293111-14293191 1.6e-05 33_[+2]_39 chr8:125461688-125461768 1.6e-05 50_[+2]_22 chr6:20203922-20204002 1.6e-05 52_[+2]_20 chr2:10416230-10416310 1.6e-05 58_[+2]_14 chr1:113360334-113360414 1.6e-05 20_[+2]_52 chr7:75473141-75473221 1.6e-05 39_[+2]_33 chr5:95043462-95043542 1.6e-05 6_[+2]_66 chr11:3530988-3531068 1.6e-05 20_[+2]_52 chr6:36852529-36852609 1.6e-05 31_[+2]_41 chr6:86082477-86082557 1.6e-05 2_[+2]_70 chr2:196372715-196372795 1.6e-05 18_[+2]_54 chr6:161632042-161632122 1.6e-05 54_[+2]_18 chr7:123633149-123633229 1.6e-05 33_[+2]_39 chr8:30060534-30060614 1.6e-05 3_[+2]_69 chr1:234397437-234397517 1.6e-05 30_[+2]_42 chr1:89636328-89636408 1.6e-05 62_[+2]_10 chr1:142886562-142886642 1.6e-05 28_[+2]_44 chr19:21803936-21804016 1.6e-05 35_[+2]_37 chr7:71101034-71101114 1.6e-05 24_[+2]_48 chr1:31611914-31611994 3.3e-05 52_[+2]_20 chr6:158176286-158176366 3.3e-05 24_[+2]_48 chr7:14040932-14041012 3.3e-05 5_[+2]_67 chr3:44479481-44479561 3.3e-05 44_[+2]_28 chr3:9686037-9686117 3.3e-05 47_[+2]_25 chr12:116994337-11699441 3.3e-05 16_[+2]_56 chr7:106437344-106437424 3.3e-05 17_[+2]_55 chr1:244325673-244325753 3.3e-05 57_[+2]_15 chr11:125431941-12543202 3.3e-05 52_[+2]_20 chr6:159133055-159133135 3.3e-05 23_[+2]_49 chr18:29277675-29277755 3.3e-05 6_[+2]_66 chr1:185509569-185509649 3.3e-05 59_[+2]_13 chr7:29834743-29834823 3.3e-05 36_[+2]_36 chr1:62332836-62332916 3.3e-05 35_[+2]_37 chr11:12400877-12400957 3.3e-05 21_[+2]_51 chrX:99866291-99866371 3.3e-05 38_[+2]_34 chrX:47668980-47669060 3.3e-05 4_[+2]_68 chr7:121184352-121184432 3.3e-05 48_[+2]_24 chr10:26051023-26051103 3.3e-05 19_[+2]_53 chr10:12486247-12486327 3.3e-05 41_[+2]_31 chr6:41260582-41260662 3.3e-05 46_[+2]_26 chr6:49690249-49690329 3.3e-05 26_[+2]_46 chr5:121215683-121215763 3.3e-05 47_[+2]_25 chr17:25435130-25435210 5e-05 44_[+2]_28 chr7:137908438-137908518 5e-05 70_[+2]_2 chr5:89936405-89936485 8e-05 6_[+2]_66 chr7:25967369-25967449 8e-05 61_[+2]_11 chr1:223972443-223972523 8e-05 30_[+2]_42 chr2:158103721-158103801 9.6e-05 1_[+2]_71 chr2:46981218-46981298 0.00013 38_[+2]_34 chr12:77272711-77272791 0.00016 71_[+2]_1 chr10:23344857-23344937 0.00016 5_[+2]_67 chr4:154458993-154459073 0.00019 48_[+2]_24 chr5:57677980-57678060 0.00024 44_[+2]_28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGAGTY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATGGAGTY width=8 seqs=66 chr6:16236417-16236497 ( 34) ATGGAGTC 1 chr1:36864291-36864371 ( 35) ATGGAGTC 1 chr6:134612431-134612511 ( 61) ATGGAGTC 1 chr3:44482969-44483049 ( 20) ATGGAGTC 1 chr2:12697963-12698043 ( 25) ATGGAGTC 1 chr4:128551476-128551556 ( 53) ATGGAGTC 1 chr19:15936733-15936813 ( 16) ATGGAGTC 1 chr15:35286226-35286306 ( 3) ATGGAGTC 1 chr9:110438221-110438301 ( 30) ATGGAGTC 1 chr5:156705804-156705884 ( 42) ATGGAGTC 1 chr7:32579139-32579219 ( 37) ATGGAGTC 1 chr6:10750895-10750975 ( 61) ATGGAGTC 1 chr22:28985250-28985330 ( 39) ATGGAGTC 1 chr3:14293111-14293191 ( 34) ATGGAGTC 1 chr8:125461688-125461768 ( 51) ATGGAGTC 1 chr6:20203922-20204002 ( 53) ATGGAGTC 1 chr2:10416230-10416310 ( 59) ATGGAGTC 1 chr1:113360334-113360414 ( 21) ATGGAGTC 1 chr7:75473141-75473221 ( 40) ATGGAGTC 1 chr5:95043462-95043542 ( 7) ATGGAGTC 1 chr11:3530988-3531068 ( 21) ATGGAGTC 1 chr6:36852529-36852609 ( 32) ATGGAGTC 1 chr6:86082477-86082557 ( 3) ATGGAGTC 1 chr2:196372715-196372795 ( 19) ATGGAGTC 1 chr6:161632042-161632122 ( 55) ATGGAGTC 1 chr7:123633149-123633229 ( 34) ATGGAGTC 1 chr8:30060534-30060614 ( 4) ATGGAGTC 1 chr1:234397437-234397517 ( 31) ATGGAGTC 1 chr1:89636328-89636408 ( 63) ATGGAGTC 1 chr1:142886562-142886642 ( 29) ATGGAGTC 1 chr19:21803936-21804016 ( 36) ATGGAGTC 1 chr7:71101034-71101114 ( 25) ATGGAGTC 1 chr1:31611914-31611994 ( 53) ATGGAGTT 1 chr6:158176286-158176366 ( 25) ATGGAGTT 1 chr7:14040932-14041012 ( 6) ATGGAGTT 1 chr3:44479481-44479561 ( 45) ATGGAGTT 1 chr3:9686037-9686117 ( 48) ATGGAGTT 1 chr12:116994337-11699441 ( 17) ATGGAGTT 1 chr7:106437344-106437424 ( 18) ATGGAGTT 1 chr1:244325673-244325753 ( 58) ATGGAGTT 1 chr11:125431941-12543202 ( 53) ATGGAGTT 1 chr6:159133055-159133135 ( 24) ATGGAGTT 1 chr18:29277675-29277755 ( 7) ATGGAGTT 1 chr1:185509569-185509649 ( 60) ATGGAGTT 1 chr7:29834743-29834823 ( 37) ATGGAGTT 1 chr1:62332836-62332916 ( 36) ATGGAGTT 1 chr11:12400877-12400957 ( 22) ATGGAGTT 1 chrX:99866291-99866371 ( 39) ATGGAGTT 1 chrX:47668980-47669060 ( 5) ATGGAGTT 1 chr7:121184352-121184432 ( 49) ATGGAGTT 1 chr10:26051023-26051103 ( 20) ATGGAGTT 1 chr10:12486247-12486327 ( 42) ATGGAGTT 1 chr6:41260582-41260662 ( 47) ATGGAGTT 1 chr6:49690249-49690329 ( 27) ATGGAGTT 1 chr5:121215683-121215763 ( 48) ATGGAGTT 1 chr17:25435130-25435210 ( 45) ATGGAGTA 1 chr7:137908438-137908518 ( 71) ATGGAGTA 1 chr5:89936405-89936485 ( 7) ATGGGGTC 1 chr7:25967369-25967449 ( 62) ATGGAGGC 1 chr1:223972443-223972523 ( 31) ATGGAGGC 1 chr2:158103721-158103801 ( 2) ATGGAATC 1 chr2:46981218-46981298 ( 39) ATGGGGTT 1 chr12:77272711-77272791 ( 72) AGGGAGTC 1 chr10:23344857-23344937 ( 6) ATGGAATT 1 chr4:154458993-154459073 ( 49) ATGGACTC 1 chr5:57677980-57678060 ( 45) ATGGTGTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGAGTY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.14152 E= 4.0e-073 195 -1269 -1269 -1269 -1269 -1269 -402 193 -1269 -1269 202 -1269 -1269 -1269 202 -1269 189 -1269 -302 -409 -309 -397 196 -1269 -1269 -1269 -302 191 -309 128 -1269 61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGAGTY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 66 E= 4.0e-073 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.015152 0.984848 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.954545 0.000000 0.030303 0.015152 0.030303 0.015152 0.954545 0.000000 0.000000 0.000000 0.030303 0.969697 0.030303 0.575758 0.000000 0.393939 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGAGTY MEME-2 regular expression -------------------------------------------------------------------------------- ATGGAGT[CT] -------------------------------------------------------------------------------- Time 8.44 secs. ******************************************************************************** ******************************************************************************** MOTIF TGAACCAG MEME-3 width = 8 sites = 63 llr = 543 E-value = 7.7e-040 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGAACCAG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::a7:1a: pos.-specific C :::3a9:: probability G :7:::::9 matrix T 93:::::: bits 2.1 * 1.9 * * 1.7 * * * 1.5 * * **** Relative 1.2 *** **** Entropy 1.0 *** **** (12.4 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGAACCAG consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAACCAG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:227038609-227038689 40 1.52e-05 cagaggcatg tgaaccag agcaactcca chr5:67924040-67924120 44 1.52e-05 cagaggtgtt tgaaccag agcaactcca chr8:29217298-29217378 23 1.52e-05 cagaggcatg tgaaccag agcaactcca chrX:55137295-55137375 35 1.52e-05 cagaggcatg tgaaccag aactacccca chr7:75431152-75431232 41 1.52e-05 cagaggtgtg tgaaccag agtgactcca chr11:86648381-86648461 39 1.52e-05 cagaggcgtc tgaaccag agcaactcca chr6:10662504-10662584 45 1.52e-05 aagagtcatt tgaaccag agcgactcca chr10:13580037-13580117 18 1.52e-05 cccaggcatg tgaaccag atcgactcca chr3:32090136-32090216 59 1.52e-05 cagaggtgtt tgaaccag agcaactcca chr7:54746614-54746694 41 1.52e-05 tagaagcgtg tgaaccag agcaactcca chr1:103120716-103120796 23 1.52e-05 aagagacgtt tgaaccag agctactcca chr6:164361877-164361957 30 1.52e-05 caaaggtgat tgaaccag agcgactcca chr7:123139784-123139864 36 1.52e-05 cagaggcgtg tgaaccag agcaactcca chr1:223079675-223079755 47 1.52e-05 cagaggcgtt tgaaccag agcaactcca chr6:169486226-169486306 41 1.52e-05 cagagctgtt tgaaccag agcaactcca chr16:26996543-26996623 52 1.52e-05 cagaagtgtg tgaaccag agcaactcca chr4:38319046-38319126 31 1.52e-05 cagaagcgtt tgaaccag agcaactcca chr20:1182792-1182872 45 1.52e-05 cagtggcatt tgaaccag agtaactcca chr7:28865549-28865629 42 1.52e-05 cagaggcatg tgaaccag agcaactcca chr1:55417646-55417726 55 1.52e-05 cagaagcatt tgaaccag agcaattcca chr4:165972059-165972139 68 1.52e-05 cagaggtgtc tgaaccag agcaa chr2:146611772-146611852 27 1.52e-05 cagaggtgtt tgaaccag agtaactcca chr6:52569734-52569814 23 1.52e-05 cagaggtgtt tgaaccag agcaactcca chr5:57677980-57678060 53 1.52e-05 taatggtgtt tgaaccag agtgagtcca chr11:20222017-20222097 41 1.52e-05 cagaggtgtg tgaaccag agcaactcca chr7:128540904-128540984 46 1.52e-05 cagaggcatt tgaaccag agcaactcca chr16:50528586-50528666 27 1.52e-05 cagaggcatt tgaaccag cccaactcca chr2:125751511-125751591 39 4.51e-05 cagaggtgtt ttaaccag agcaactcca chr7:29834743-29834823 17 4.51e-05 cagccttact ttaaccag ctcctattca chr1:31611914-31611994 33 5.98e-05 ctgccttatt ttacccag cccctattca chr6:158176286-158176366 4 5.98e-05 att ttacccag ctctgtattc chr3:44479481-44479561 25 5.98e-05 tctgacaCtt ttacccag cccctattca chr4:128551476-128551556 33 5.98e-05 cagccttatt ttacccag cccctattca chr9:110438221-110438301 10 5.98e-05 agctttatt ttacccag cccctattca chr6:159133055-159133135 4 5.98e-05 att ttacccag ctcctattca chr2:10416230-10416310 39 5.98e-05 cagccttatt ttacccag ccgctattca chr1:62332836-62332916 17 5.98e-05 cagcctcatt ttacccag cgctattcaa chr7:123633149-123633229 15 5.98e-05 cagcctcatt ttacccag ccctattcaa chrX:99866291-99866371 19 5.98e-05 cagcctcatt ttacccag ctcctattca chr7:71101034-71101114 5 5.98e-05 tatt ttacccag cccctattca chr10:12486247-12486327 22 5.98e-05 cagccttatt ttacccag ctcctattca chr6:41260582-41260662 27 5.98e-05 cagcctcatt ttacccag ctcctattca chr5:121215683-121215763 28 5.98e-05 cagcctcatt ttacccag ctcctattca chr6:16236417-16236497 2 7.63e-05 a tgaacaag gacaccttgg chr1:18748633-18748713 54 7.63e-05 caggggcgtt tgaacaag agtgactcca chr9:79052087-79052167 8 7.63e-05 aaacatg tgaacaag agcaactcca chr19:52290318-52290398 67 9.08e-05 cagaggcact ggaaccag agcaac chr7:142411588-142411668 31 1.20e-04 cagagacatg tgaaccac agcaactcca chr5:70694853-70694933 41 1.20e-04 cagaggcctt tgaaccac agcaactcca chr5:2156633-2156713 45 1.20e-04 cacaggtgtt tgagccag agtgactcca chr12:15077597-15077677 36 1.20e-04 cagagatgtt tgagccag agcaactcca chr7:92778252-92778332 45 1.49e-04 cagagacatt cgaaccag agtgactcca chr12:58241039-58241119 39 1.49e-04 CCTTCAGGGG TGACCAAG ACAAGCCGCT chr3:14293111-14293191 2 1.49e-04 t tgaccaag gacagcttgg chr8:29474716-29474796 53 1.49e-04 cagagatgtt cgaaccag agcaactcca chr6:20203922-20204002 19 1.63e-04 accgagctcc tgcaccag gccccaacag chr1:95396964-95397044 15 1.79e-04 cagaggcatg tgaaccaa agcaactcca chr6:86144959-86145039 51 1.79e-04 tcaaggcatt tgaaccaa agcaactcca chr22:21011447-21011527 6 1.92e-04 gttca ggacccag tggtgtaact chr17:79008977-79009057 66 1.92e-04 GGTGCAGCCG GGACCCAG GACCATG chr7:24818186-24818266 1 3.11e-04 . TGCCCCAG GTGTTgggtt chr7:137031008-137031088 1 3.11e-04 . ttaaccac ctctgacacc chr21:19062522-19062602 49 3.11e-04 caggggcatt tgaactag agtgactcca -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAACCAG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:227038609-227038689 1.5e-05 39_[+3]_33 chr5:67924040-67924120 1.5e-05 43_[+3]_29 chr8:29217298-29217378 1.5e-05 22_[+3]_50 chrX:55137295-55137375 1.5e-05 34_[+3]_38 chr7:75431152-75431232 1.5e-05 40_[+3]_32 chr11:86648381-86648461 1.5e-05 38_[+3]_34 chr6:10662504-10662584 1.5e-05 44_[+3]_28 chr10:13580037-13580117 1.5e-05 17_[+3]_55 chr3:32090136-32090216 1.5e-05 58_[+3]_14 chr7:54746614-54746694 1.5e-05 40_[+3]_32 chr1:103120716-103120796 1.5e-05 22_[+3]_50 chr6:164361877-164361957 1.5e-05 29_[+3]_43 chr7:123139784-123139864 1.5e-05 35_[+3]_37 chr1:223079675-223079755 1.5e-05 46_[+3]_26 chr6:169486226-169486306 1.5e-05 40_[+3]_32 chr16:26996543-26996623 1.5e-05 51_[+3]_21 chr4:38319046-38319126 1.5e-05 30_[+3]_42 chr20:1182792-1182872 1.5e-05 44_[+3]_28 chr7:28865549-28865629 1.5e-05 41_[+3]_31 chr1:55417646-55417726 1.5e-05 54_[+3]_18 chr4:165972059-165972139 1.5e-05 67_[+3]_5 chr2:146611772-146611852 1.5e-05 26_[+3]_46 chr6:52569734-52569814 1.5e-05 22_[+3]_50 chr5:57677980-57678060 1.5e-05 52_[+3]_20 chr11:20222017-20222097 1.5e-05 40_[+3]_32 chr7:128540904-128540984 1.5e-05 45_[+3]_27 chr16:50528586-50528666 1.5e-05 26_[+3]_46 chr2:125751511-125751591 4.5e-05 38_[+3]_34 chr7:29834743-29834823 4.5e-05 16_[+3]_56 chr1:31611914-31611994 6e-05 32_[+3]_40 chr6:158176286-158176366 6e-05 3_[+3]_69 chr3:44479481-44479561 6e-05 24_[+3]_48 chr4:128551476-128551556 6e-05 32_[+3]_40 chr9:110438221-110438301 6e-05 9_[+3]_63 chr6:159133055-159133135 6e-05 3_[+3]_69 chr2:10416230-10416310 6e-05 38_[+3]_34 chr1:62332836-62332916 6e-05 16_[+3]_56 chr7:123633149-123633229 6e-05 14_[+3]_58 chrX:99866291-99866371 6e-05 18_[+3]_54 chr7:71101034-71101114 6e-05 4_[+3]_68 chr10:12486247-12486327 6e-05 21_[+3]_51 chr6:41260582-41260662 6e-05 26_[+3]_46 chr5:121215683-121215763 6e-05 27_[+3]_45 chr6:16236417-16236497 7.6e-05 1_[+3]_71 chr1:18748633-18748713 7.6e-05 53_[+3]_19 chr9:79052087-79052167 7.6e-05 7_[+3]_65 chr19:52290318-52290398 9.1e-05 66_[+3]_6 chr7:142411588-142411668 0.00012 30_[+3]_42 chr5:70694853-70694933 0.00012 40_[+3]_32 chr5:2156633-2156713 0.00012 44_[+3]_28 chr12:15077597-15077677 0.00012 35_[+3]_37 chr7:92778252-92778332 0.00015 44_[+3]_28 chr12:58241039-58241119 0.00015 38_[+3]_34 chr3:14293111-14293191 0.00015 1_[+3]_71 chr8:29474716-29474796 0.00015 52_[+3]_20 chr6:20203922-20204002 0.00016 18_[+3]_54 chr1:95396964-95397044 0.00018 14_[+3]_58 chr6:86144959-86145039 0.00018 50_[+3]_22 chr22:21011447-21011527 0.00019 5_[+3]_67 chr17:79008977-79009057 0.00019 65_[+3]_7 chr7:24818186-24818266 0.00031 [+3]_72 chr7:137031008-137031088 0.00031 [+3]_72 chr21:19062522-19062602 0.00031 48_[+3]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAACCAG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGAACCAG width=8 seqs=63 chr1:227038609-227038689 ( 40) TGAACCAG 1 chr5:67924040-67924120 ( 44) TGAACCAG 1 chr8:29217298-29217378 ( 23) TGAACCAG 1 chrX:55137295-55137375 ( 35) TGAACCAG 1 chr7:75431152-75431232 ( 41) TGAACCAG 1 chr11:86648381-86648461 ( 39) TGAACCAG 1 chr6:10662504-10662584 ( 45) TGAACCAG 1 chr10:13580037-13580117 ( 18) TGAACCAG 1 chr3:32090136-32090216 ( 59) TGAACCAG 1 chr7:54746614-54746694 ( 41) TGAACCAG 1 chr1:103120716-103120796 ( 23) TGAACCAG 1 chr6:164361877-164361957 ( 30) TGAACCAG 1 chr7:123139784-123139864 ( 36) TGAACCAG 1 chr1:223079675-223079755 ( 47) TGAACCAG 1 chr6:169486226-169486306 ( 41) TGAACCAG 1 chr16:26996543-26996623 ( 52) TGAACCAG 1 chr4:38319046-38319126 ( 31) TGAACCAG 1 chr20:1182792-1182872 ( 45) TGAACCAG 1 chr7:28865549-28865629 ( 42) TGAACCAG 1 chr1:55417646-55417726 ( 55) TGAACCAG 1 chr4:165972059-165972139 ( 68) TGAACCAG 1 chr2:146611772-146611852 ( 27) TGAACCAG 1 chr6:52569734-52569814 ( 23) TGAACCAG 1 chr5:57677980-57678060 ( 53) TGAACCAG 1 chr11:20222017-20222097 ( 41) TGAACCAG 1 chr7:128540904-128540984 ( 46) TGAACCAG 1 chr16:50528586-50528666 ( 27) TGAACCAG 1 chr2:125751511-125751591 ( 39) TTAACCAG 1 chr7:29834743-29834823 ( 17) TTAACCAG 1 chr1:31611914-31611994 ( 33) TTACCCAG 1 chr6:158176286-158176366 ( 4) TTACCCAG 1 chr3:44479481-44479561 ( 25) TTACCCAG 1 chr4:128551476-128551556 ( 33) TTACCCAG 1 chr9:110438221-110438301 ( 10) TTACCCAG 1 chr6:159133055-159133135 ( 4) TTACCCAG 1 chr2:10416230-10416310 ( 39) TTACCCAG 1 chr1:62332836-62332916 ( 17) TTACCCAG 1 chr7:123633149-123633229 ( 15) TTACCCAG 1 chrX:99866291-99866371 ( 19) TTACCCAG 1 chr7:71101034-71101114 ( 5) TTACCCAG 1 chr10:12486247-12486327 ( 22) TTACCCAG 1 chr6:41260582-41260662 ( 27) TTACCCAG 1 chr5:121215683-121215763 ( 28) TTACCCAG 1 chr6:16236417-16236497 ( 2) TGAACAAG 1 chr1:18748633-18748713 ( 54) TGAACAAG 1 chr9:79052087-79052167 ( 8) TGAACAAG 1 chr19:52290318-52290398 ( 67) GGAACCAG 1 chr7:142411588-142411668 ( 31) TGAACCAC 1 chr5:70694853-70694933 ( 41) TGAACCAC 1 chr5:2156633-2156713 ( 45) TGAGCCAG 1 chr12:15077597-15077677 ( 36) TGAGCCAG 1 chr7:92778252-92778332 ( 45) CGAACCAG 1 chr12:58241039-58241119 ( 39) TGACCAAG 1 chr3:14293111-14293191 ( 2) TGACCAAG 1 chr8:29474716-29474796 ( 53) CGAACCAG 1 chr6:20203922-20204002 ( 19) TGCACCAG 1 chr1:95396964-95397044 ( 15) TGAACCAA 1 chr6:86144959-86145039 ( 51) TGAACCAA 1 chr22:21011447-21011527 ( 6) GGACCCAG 1 chr17:79008977-79009057 ( 66) GGACCCAG 1 chr7:24818186-24818266 ( 1) TGCCCCAG 1 chr7:137031008-137031088 ( 1) TTAACCAC 1 chr21:19062522-19062602 ( 49) TGAACTAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAACCAG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.15507 E= 7.7e-040 -1262 -290 -237 183 -1262 -1262 157 6 191 -290 -1262 -1262 137 34 -295 -1262 -1262 207 -1262 -1262 -170 193 -1262 -402 195 -1262 -1262 -1262 -302 -232 190 -1262 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAACCAG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 63 E= 7.7e-040 0.000000 0.031746 0.047619 0.920635 0.000000 0.000000 0.730159 0.269841 0.968254 0.031746 0.000000 0.000000 0.666667 0.301587 0.031746 0.000000 0.000000 1.000000 0.000000 0.000000 0.079365 0.904762 0.000000 0.015873 1.000000 0.000000 0.000000 0.000000 0.031746 0.047619 0.920635 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGAACCAG MEME-3 regular expression -------------------------------------------------------------------------------- T[GT]A[AC]CCAG -------------------------------------------------------------------------------- Time 11.95 secs. ******************************************************************************** ******************************************************************************** MOTIF CTCTGGTT MEME-4 width = 8 sites = 33 llr = 339 E-value = 1.5e-029 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTCTGGTT MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a:9::::: probability G ::1:99:: matrix T :a:a1:aa bits 2.1 * 1.9 ** * ** 1.7 ******** 1.5 ******** Relative 1.2 ******** Entropy 1.0 ******** (14.8 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTCTGGTT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTGGTT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:31611914-31611994 62 1.52e-05 gatggagttg ctctggtt caaatgcttc chr6:158176286-158176366 34 1.52e-05 gatggagttg ctctggtt cgcatgcctc chr3:44482969-44483049 29 1.52e-05 gatggagtca ctctggtt caaacgcctc chr2:12697963-12698043 34 1.52e-05 gatggagtca ctctggtt caaacgcctg chr4:128551476-128551556 62 1.52e-05 gatggagtcg ctctggtt caaatgcctc chr3:176065753-176065833 3 1.52e-05 ca ctctggtt caaacacctc chr1:162465819-162465899 8 1.52e-05 ggagttg ctctggtt tgaacacctc chr9:110438221-110438301 39 1.52e-05 gatggagtca ctctggtt caaacgcctc chr7:32579139-32579219 46 1.52e-05 gatggagtca ctctggtt agggtgcctc chr1:244325673-244325753 67 1.52e-05 gatggagttg ctctggtt caaatg chr8:125461688-125461768 60 1.52e-05 gatggagtca ctctggtt tggactcctc chr2:10416230-10416310 68 1.52e-05 gatggagtca ctctggtt tgaat chr7:75473141-75473221 49 1.52e-05 gatggagtca ctctggtt ctaacgcctc chr1:185509569-185509649 69 1.52e-05 gatggagttg ctctggtt caaa chr7:29834743-29834823 46 1.52e-05 gatggagttg ctctggtt caaacgcctc chr1:62332836-62332916 45 1.52e-05 gatggagttg ctctggtt ccagcacctc chr2:46981218-46981298 48 1.52e-05 gatggggttg ctctggtt caaacacctc chr7:123633149-123633229 43 1.52e-05 gatggagtca ctctggtt ccaatgcttc chr11:12400877-12400957 31 1.52e-05 gatggagttg ctctggtt cacatgcctc chrX:99866291-99866371 48 1.52e-05 gatggagttg ctctggtt cacactcctc chrX:47668980-47669060 14 1.52e-05 gatggagtta ctctggtt cgaacacctc chr7:71101034-71101114 34 1.52e-05 gatggagtca ctctggtt caaacgcctc chr10:12486247-12486327 51 1.52e-05 gatggagttg ctctggtt caaacgcctc chr6:41260582-41260662 56 1.52e-05 gatggagttg ctctggtt cacacgcctc chr6:49690249-49690329 36 1.52e-05 gatggagttt ctctggtt cacacacctc chr5:121215683-121215763 57 1.52e-05 gatggagttg ctctggtt cacaggcctc chr6:159133055-159133135 33 3.09e-05 gatggagttg ctgtggtt cacatacctc chr3:111199151-111199231 3 3.09e-05 AT CTGTGGTT AGCTGTCTAT chr10:26051023-26051103 29 3.09e-05 gatggagttg ctgtggtt catacacctc chr12:116994337-11699441 26 4.68e-05 gatggagttg ctcttgtt cacaagtctc chr1:234397437-234397517 40 4.68e-05 aatggagtca ctcttgtt caaatgcctc chr1:236451658-236451738 54 6.15e-05 tagagagcta ctctgctt tctctttctt chr2:196372715-196372795 42 7.74e-05 tgtcaaattt ctctgttt gacagtttcc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTGGTT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:31611914-31611994 1.5e-05 61_[+4]_11 chr6:158176286-158176366 1.5e-05 33_[+4]_39 chr3:44482969-44483049 1.5e-05 28_[+4]_44 chr2:12697963-12698043 1.5e-05 33_[+4]_39 chr4:128551476-128551556 1.5e-05 61_[+4]_11 chr3:176065753-176065833 1.5e-05 2_[+4]_70 chr1:162465819-162465899 1.5e-05 7_[+4]_65 chr9:110438221-110438301 1.5e-05 38_[+4]_34 chr7:32579139-32579219 1.5e-05 45_[+4]_27 chr1:244325673-244325753 1.5e-05 66_[+4]_6 chr8:125461688-125461768 1.5e-05 59_[+4]_13 chr2:10416230-10416310 1.5e-05 67_[+4]_5 chr7:75473141-75473221 1.5e-05 48_[+4]_24 chr1:185509569-185509649 1.5e-05 68_[+4]_4 chr7:29834743-29834823 1.5e-05 45_[+4]_27 chr1:62332836-62332916 1.5e-05 44_[+4]_28 chr2:46981218-46981298 1.5e-05 47_[+4]_25 chr7:123633149-123633229 1.5e-05 42_[+4]_30 chr11:12400877-12400957 1.5e-05 30_[+4]_42 chrX:99866291-99866371 1.5e-05 47_[+4]_25 chrX:47668980-47669060 1.5e-05 13_[+4]_59 chr7:71101034-71101114 1.5e-05 33_[+4]_39 chr10:12486247-12486327 1.5e-05 50_[+4]_22 chr6:41260582-41260662 1.5e-05 55_[+4]_17 chr6:49690249-49690329 1.5e-05 35_[+4]_37 chr5:121215683-121215763 1.5e-05 56_[+4]_16 chr6:159133055-159133135 3.1e-05 32_[+4]_40 chr3:111199151-111199231 3.1e-05 2_[+4]_70 chr10:26051023-26051103 3.1e-05 28_[+4]_44 chr12:116994337-11699441 4.7e-05 25_[+4]_47 chr1:234397437-234397517 4.7e-05 39_[+4]_33 chr1:236451658-236451738 6.2e-05 53_[+4]_19 chr2:196372715-196372795 7.7e-05 41_[+4]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTGGTT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTCTGGTT width=8 seqs=33 chr1:31611914-31611994 ( 62) CTCTGGTT 1 chr6:158176286-158176366 ( 34) CTCTGGTT 1 chr3:44482969-44483049 ( 29) CTCTGGTT 1 chr2:12697963-12698043 ( 34) CTCTGGTT 1 chr4:128551476-128551556 ( 62) CTCTGGTT 1 chr3:176065753-176065833 ( 3) CTCTGGTT 1 chr1:162465819-162465899 ( 8) CTCTGGTT 1 chr9:110438221-110438301 ( 39) CTCTGGTT 1 chr7:32579139-32579219 ( 46) CTCTGGTT 1 chr1:244325673-244325753 ( 67) CTCTGGTT 1 chr8:125461688-125461768 ( 60) CTCTGGTT 1 chr2:10416230-10416310 ( 68) CTCTGGTT 1 chr7:75473141-75473221 ( 49) CTCTGGTT 1 chr1:185509569-185509649 ( 69) CTCTGGTT 1 chr7:29834743-29834823 ( 46) CTCTGGTT 1 chr1:62332836-62332916 ( 45) CTCTGGTT 1 chr2:46981218-46981298 ( 48) CTCTGGTT 1 chr7:123633149-123633229 ( 43) CTCTGGTT 1 chr11:12400877-12400957 ( 31) CTCTGGTT 1 chrX:99866291-99866371 ( 48) CTCTGGTT 1 chrX:47668980-47669060 ( 14) CTCTGGTT 1 chr7:71101034-71101114 ( 34) CTCTGGTT 1 chr10:12486247-12486327 ( 51) CTCTGGTT 1 chr6:41260582-41260662 ( 56) CTCTGGTT 1 chr6:49690249-49690329 ( 36) CTCTGGTT 1 chr5:121215683-121215763 ( 57) CTCTGGTT 1 chr6:159133055-159133135 ( 33) CTGTGGTT 1 chr3:111199151-111199231 ( 3) CTGTGGTT 1 chr10:26051023-26051103 ( 29) CTGTGGTT 1 chr12:116994337-11699441 ( 26) CTCTTGTT 1 chr1:234397437-234397517 ( 40) CTCTTGTT 1 chr1:236451658-236451738 ( 54) CTCTGCTT 1 chr2:196372715-196372795 ( 42) CTCTGTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTGGTT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.14407 E= 1.5e-029 -1169 207 -1169 -1169 -1169 -1169 -1169 195 -1169 194 -144 -1169 -1169 -1169 -1169 195 -1169 -1169 193 -209 -1169 -297 193 -309 -1169 -1169 -1169 195 -1169 -1169 -1169 195 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTGGTT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 1.5e-029 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.909091 0.090909 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.939394 0.060606 0.000000 0.030303 0.939394 0.030303 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTGGTT MEME-4 regular expression -------------------------------------------------------------------------------- CTCTGGTT -------------------------------------------------------------------------------- Time 15.38 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTCAGAG MEME-5 width = 8 sites = 36 llr = 352 E-value = 1.5e-026 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTCAGAG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::a:91 pos.-specific C :::a:::: probability G :a:::919 matrix T a:a::1:: bits 2.1 * 1.9 ***** 1.7 ***** 1.5 ******** Relative 1.2 ******** Entropy 1.0 ******** (14.1 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTCAGAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCAGAG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:142411588-142411668 18 1.57e-05 AGGGTGGATT tgtcagag acatgtgaac chr19:52290318-52290398 54 1.57e-05 ACTGTAATGA tgtcagag gcactggaac chr1:227038609-227038689 27 1.57e-05 gaagtataag tgtcagag gcatgtgaac chr5:67924040-67924120 31 1.57e-05 tgtgaccttg tgtcagag gtgtttgaac chr5:70694853-70694933 28 1.57e-05 tttttcctta tgtcagag gcctttgaac chr8:29217298-29217378 10 1.57e-05 GACTTTAAG tgtcagag gcatgtgaac chr7:92778252-92778332 32 1.57e-05 accctgATAA tgtcagag acattcgaac chrX:55137295-55137375 22 1.57e-05 aggggggaaa tgtcagag gcatgtgaac chr7:75431152-75431232 28 1.57e-05 ATTGCCATCC tgtcagag gtgtgtgaac chr11:86648381-86648461 26 1.57e-05 ATTATAGAAT tgtcagag gcgtctgaac chr3:32090136-32090216 46 1.57e-05 CAGCTGGTCA tgtcagag gtgtttgaac chr7:123139784-123139864 23 1.57e-05 tatgagtaac tgtcagag gcgtgtgaac chr6:169486226-169486306 28 1.57e-05 GGTACACTAG tgtcagag ctgtttgaac chr1:95396964-95397044 2 1.57e-05 C tgtcagag gcatgtgaac chr7:28865549-28865629 29 1.57e-05 CACATAGTCT tgtcagag gcatgtgaac chr8:29474716-29474796 40 1.57e-05 ATGCTGACAT tgtcagag atgttcgaac chr2:146611772-146611852 14 1.57e-05 GTAACAGAAA tgtcagag gtgtttgaac chr6:52569734-52569814 10 1.57e-05 agatcatgc tgtcagag gtgtttgaac chr11:20222017-20222097 28 1.57e-05 ATCGTGCAGT tgtcagag gtgtgtgaac chr7:128540904-128540984 33 1.57e-05 agagggaaaa tgtcagag gcatttgaac chr12:15077597-15077677 23 1.57e-05 AGCCTATCGC tgtcagag atgtttgagc chr16:50528586-50528666 14 1.57e-05 ttagccaTCC tgtcagag gcatttgaac chr2:34119611-34119691 65 1.57e-05 AATATACCTG tgtcagag gtgtatga chr3:14293111-14293191 64 3.22e-05 tttctcttac tgtcagaa tgttGCAAA chr16:26996543-26996623 39 3.22e-05 aaagtgggct tgtcagaa gtgtgtgaac chr4:38319046-38319126 18 3.22e-05 GAAGCCATTG tgtcagaa gcgtttgaac chr1:55417646-55417726 42 3.22e-05 GAAGCAGTAC tgtcagaa gcatttgaac chr1:89636328-89636408 20 3.22e-05 Ctgcaaaagt tgtcagaa gcaaaatgga chr21:19062522-19062602 36 4.71e-05 CAAGTCCTCA tgtcaggg gcatttgaac chr1:147994004-147994084 33 4.71e-05 CCCAGCTGTG TGTCAGGG CTAGGAGGGC chr1:17222321-17222401 54 4.71e-05 CCCAGCTGTG TGTCAGGG CTGGAAAGGG chr2:87816019-87816099 19 6.36e-05 CTAAGGGAGC TGTCATAG GTTCTTCCCt chr4:138889190-138889270 17 6.36e-05 tctctttcac tgtcatag ttttctctct chr5:2156633-2156713 32 7.88e-05 tctcaacatt tgtcacag gtgtttgagc chr1:175379737-175379817 52 1.11e-04 gctgatgaat tgtgagag gaagtggtgt chr6:164361877-164361957 17 1.11e-04 AAGGCAGGGG tgtcaaag gtgattgaac -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCAGAG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:142411588-142411668 1.6e-05 17_[+5]_55 chr19:52290318-52290398 1.6e-05 53_[+5]_19 chr1:227038609-227038689 1.6e-05 26_[+5]_46 chr5:67924040-67924120 1.6e-05 30_[+5]_42 chr5:70694853-70694933 1.6e-05 27_[+5]_45 chr8:29217298-29217378 1.6e-05 9_[+5]_63 chr7:92778252-92778332 1.6e-05 31_[+5]_41 chrX:55137295-55137375 1.6e-05 21_[+5]_51 chr7:75431152-75431232 1.6e-05 27_[+5]_45 chr11:86648381-86648461 1.6e-05 25_[+5]_47 chr3:32090136-32090216 1.6e-05 45_[+5]_27 chr7:123139784-123139864 1.6e-05 22_[+5]_50 chr6:169486226-169486306 1.6e-05 27_[+5]_45 chr1:95396964-95397044 1.6e-05 1_[+5]_71 chr7:28865549-28865629 1.6e-05 28_[+5]_44 chr8:29474716-29474796 1.6e-05 39_[+5]_33 chr2:146611772-146611852 1.6e-05 13_[+5]_59 chr6:52569734-52569814 1.6e-05 9_[+5]_63 chr11:20222017-20222097 1.6e-05 27_[+5]_45 chr7:128540904-128540984 1.6e-05 32_[+5]_40 chr12:15077597-15077677 1.6e-05 22_[+5]_50 chr16:50528586-50528666 1.6e-05 13_[+5]_59 chr2:34119611-34119691 1.6e-05 64_[+5]_8 chr3:14293111-14293191 3.2e-05 63_[+5]_9 chr16:26996543-26996623 3.2e-05 38_[+5]_34 chr4:38319046-38319126 3.2e-05 17_[+5]_55 chr1:55417646-55417726 3.2e-05 41_[+5]_31 chr1:89636328-89636408 3.2e-05 19_[+5]_53 chr21:19062522-19062602 4.7e-05 35_[+5]_37 chr1:147994004-147994084 4.7e-05 32_[+5]_40 chr1:17222321-17222401 4.7e-05 53_[+5]_19 chr2:87816019-87816099 6.4e-05 18_[+5]_54 chr4:138889190-138889270 6.4e-05 16_[+5]_56 chr5:2156633-2156713 7.9e-05 31_[+5]_41 chr1:175379737-175379817 0.00011 51_[+5]_21 chr6:164361877-164361957 0.00011 16_[+5]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCAGAG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTCAGAG width=8 seqs=36 chr7:142411588-142411668 ( 18) TGTCAGAG 1 chr19:52290318-52290398 ( 54) TGTCAGAG 1 chr1:227038609-227038689 ( 27) TGTCAGAG 1 chr5:67924040-67924120 ( 31) TGTCAGAG 1 chr5:70694853-70694933 ( 28) TGTCAGAG 1 chr8:29217298-29217378 ( 10) TGTCAGAG 1 chr7:92778252-92778332 ( 32) TGTCAGAG 1 chrX:55137295-55137375 ( 22) TGTCAGAG 1 chr7:75431152-75431232 ( 28) TGTCAGAG 1 chr11:86648381-86648461 ( 26) TGTCAGAG 1 chr3:32090136-32090216 ( 46) TGTCAGAG 1 chr7:123139784-123139864 ( 23) TGTCAGAG 1 chr6:169486226-169486306 ( 28) TGTCAGAG 1 chr1:95396964-95397044 ( 2) TGTCAGAG 1 chr7:28865549-28865629 ( 29) TGTCAGAG 1 chr8:29474716-29474796 ( 40) TGTCAGAG 1 chr2:146611772-146611852 ( 14) TGTCAGAG 1 chr6:52569734-52569814 ( 10) TGTCAGAG 1 chr11:20222017-20222097 ( 28) TGTCAGAG 1 chr7:128540904-128540984 ( 33) TGTCAGAG 1 chr12:15077597-15077677 ( 23) TGTCAGAG 1 chr16:50528586-50528666 ( 14) TGTCAGAG 1 chr2:34119611-34119691 ( 65) TGTCAGAG 1 chr3:14293111-14293191 ( 64) TGTCAGAA 1 chr16:26996543-26996623 ( 39) TGTCAGAA 1 chr4:38319046-38319126 ( 18) TGTCAGAA 1 chr1:55417646-55417726 ( 42) TGTCAGAA 1 chr1:89636328-89636408 ( 20) TGTCAGAA 1 chr21:19062522-19062602 ( 36) TGTCAGGG 1 chr1:147994004-147994084 ( 33) TGTCAGGG 1 chr1:17222321-17222401 ( 54) TGTCAGGG 1 chr2:87816019-87816099 ( 19) TGTCATAG 1 chr4:138889190-138889270 ( 17) TGTCATAG 1 chr5:2156633-2156713 ( 32) TGTCACAG 1 chr1:175379737-175379817 ( 52) TGTGAGAG 1 chr6:164361877-164361957 ( 17) TGTCAAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCAGAG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.11739 E= 1.5e-026 -1181 -1181 -1181 195 -1181 -1181 202 -1181 -1181 -1181 -1181 195 -1181 203 -314 -1181 195 -1181 -1181 -1181 -321 -309 185 -221 183 -1181 -156 -1181 -89 -1181 181 -1181 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCAGAG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 1.5e-026 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.972222 0.027778 0.000000 1.000000 0.000000 0.000000 0.000000 0.027778 0.027778 0.888889 0.055556 0.916667 0.000000 0.083333 0.000000 0.138889 0.000000 0.861111 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCAGAG MEME-5 regular expression -------------------------------------------------------------------------------- TGTCAGAG -------------------------------------------------------------------------------- Time 18.76 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:153686491-153686571 9.68e-01 80 chr6:29782981-29783061 1.35e-01 80 chr16:88851593-88851673 7.87e-01 80 chr6:112668545-112668625 7.09e-01 80 chr5:121215683-121215763 8.15e-06 27_[+3(5.98e-05)]_12_[+2(3.27e-05)]_\ 1_[+4(1.52e-05)]_16 chr2:34119611-34119691 5.89e-03 64_[+5(1.57e-05)]_8 chr19:5352448-5352528 5.76e-01 80 chr6:70320240-70320320 6.63e-01 80 chr1:17222321-17222401 3.29e-02 53_[+5(4.71e-05)]_19 chr12:9517121-9517201 4.85e-01 80 chrX:132017533-132017613 4.63e-02 67_[+1(1.42e-05)]_5 chr19:4969297-4969377 9.93e-01 80 chr19:4969093-4969173 9.36e-01 80 chr7:138040133-138040213 4.82e-02 80 chr7:138048624-138048704 3.24e-02 50_[+1(2.96e-05)]_22 chr17:79008977-79009057 6.91e-02 80 chr11:61266524-61266604 7.01e-01 80 chr6:49690249-49690329 3.00e-04 26_[+2(3.27e-05)]_1_[+4(1.52e-05)]_\ 37 chr20:60641162-60641242 9.56e-01 80 chr1:149783843-149783923 8.91e-01 80 chr6:41260582-41260662 9.66e-06 26_[+3(5.98e-05)]_12_[+2(3.27e-05)]_\ 1_[+4(1.52e-05)]_17 chr10:12486247-12486327 1.81e-05 21_[+3(5.98e-05)]_12_[+2(3.27e-05)]_\ 1_[+4(1.52e-05)]_22 chr2:108972696-108972776 1.71e-01 80 chr10:26051023-26051103 1.72e-03 19_[+2(3.27e-05)]_1_[+4(3.09e-05)]_\ 44 chr7:71101034-71101114 5.01e-06 4_[+3(5.98e-05)]_12_[+2(1.57e-05)]_\ 1_[+4(1.52e-05)]_39 chr11:9025461-9025541 9.87e-01 80 chr11:121097190-12109727 5.75e-01 80 chr1:204136265-204136345 2.27e-02 43_[+1(2.96e-05)]_29 chr1:147994004-147994084 3.56e-02 32_[+5(4.71e-05)]_40 chr7:121184352-121184432 1.87e-02 48_[+2(3.27e-05)]_24 chrX:47668980-47669060 2.99e-05 4_[+2(3.27e-05)]_1_[+4(1.52e-05)]_\ 24_[+1(8.55e-05)]_27 chr19:21803936-21804016 1.90e-03 35_[+2(1.57e-05)]_37 chr1:68388890-68388970 8.34e-04 46_[+1(2.96e-05)]_26 chr11:1372861-1372941 5.87e-01 80 chr7:2913651-2913731 8.48e-01 80 chr19:33793346-33793426 8.84e-01 80 chr16:50528586-50528666 4.82e-06 13_[+5(1.57e-05)]_5_[+3(1.52e-05)]_\ 5_[+1(1.42e-05)]_33 chr6:14709668-14709748 8.02e-01 80 chr3:125919541-125919621 1.59e-01 80 chr5:85868838-85868918 6.94e-01 80 chr2:30884089-30884169 1.71e-01 80 chr10:23344857-23344937 4.37e-02 80 chr2:131966815-131966895 5.60e-01 80 chr19:14116662-14116742 8.32e-01 80 chr2:152100183-152100263 6.68e-01 80 chr1:142886562-142886642 8.78e-02 28_[+2(1.57e-05)]_44 chrX:99866291-99866371 8.15e-06 18_[+3(5.98e-05)]_12_[+2(3.27e-05)]_\ 1_[+4(1.52e-05)]_25 chr11:12400877-12400957 2.10e-04 21_[+2(3.27e-05)]_1_[+4(1.52e-05)]_\ 42 chr12:15077597-15077677 1.69e-05 22_[+5(1.57e-05)]_18_[+1(1.42e-05)]_\ 24 chr3:129035345-129035425 7.33e-01 80 chr10:17134316-17134396 6.71e-03 66_[+1(1.42e-05)]_6 chr5:31362457-31362537 5.51e-01 80 chr1:89636328-89636408 1.23e-03 19_[+5(3.22e-05)]_5_[+2(1.57e-05)]_\ 22_[+2(1.57e-05)]_10 chr1:234397437-234397517 8.47e-06 30_[+2(1.57e-05)]_1_[+4(4.68e-05)]_\ 33 chr1:36482414-36482494 3.78e-02 52_[+1(2.96e-05)]_20 chr8:30060534-30060614 2.86e-03 3_[+2(1.57e-05)]_10_[+2(3.27e-05)]_\ 51 chr22:50354358-50354438 8.52e-01 80 chr2:30454411-30454491 5.26e-01 80 chr3:151393783-151393863 7.39e-03 25_[+1(1.42e-05)]_47 chr7:128540904-128540984 4.70e-06 32_[+5(1.57e-05)]_5_[+3(1.52e-05)]_\ 5_[+1(1.42e-05)]_14 chr7:137899841-137899921 8.82e-02 39_[+1(2.96e-05)]_33 chr1:185310659-185310739 1.93e-02 60_[+1(2.96e-05)]_12 chr7:123633149-123633229 4.46e-06 14_[+3(5.98e-05)]_11_[+2(1.57e-05)]_\ 1_[+4(1.52e-05)]_30 chr3:171695381-171695461 6.12e-01 80 chr11:20222017-20222097 6.61e-06 27_[+5(1.57e-05)]_5_[+3(1.52e-05)]_\ 5_[+1(1.42e-05)]_19 chr2:46981218-46981298 1.07e-03 47_[+4(1.52e-05)]_25 chr16:89989758-89989838 8.41e-01 80 chr21:19062522-19062602 8.59e-06 35_[+5(4.71e-05)]_18_[+1(1.42e-05)]_\ 11 chr5:57677980-57678060 4.35e-04 52_[+3(1.52e-05)]_20 chr18:9874914-9874994 6.40e-01 80 chr6:86144959-86145039 4.59e-05 63_[+1(2.96e-05)]_9 chr6:52569734-52569814 3.22e-06 9_[+5(1.57e-05)]_5_[+3(1.52e-05)]_5_\ [+1(1.42e-05)]_37 chr2:103039956-103040036 2.72e-01 80 chr8:125828019-125828099 3.81e-02 80 chr5:42811964-42812044 2.04e-01 64_[+4(9.39e-05)]_8 chr6:161632042-161632122 2.21e-02 54_[+2(1.57e-05)]_18 chr11:74699688-74699768 8.03e-01 80 chr1:62332836-62332916 5.08e-06 16_[+3(5.98e-05)]_11_[+2(3.27e-05)]_\ 1_[+4(1.52e-05)]_28 chr7:137031008-137031088 6.82e-02 80 chr10:104215021-10421510 1.78e-01 80 chr7:13889178-13889258 3.65e-01 80 chr7:29834743-29834823 1.92e-05 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25_[+5(1.57e-05)]_5_[+3(1.52e-05)]_\ 5_[+1(1.42e-05)]_21 chr15:35286226-35286306 1.76e-02 2_[+2(1.57e-05)]_70 chr2:135576172-135576252 1.01e-02 7_[+1(2.96e-05)]_65 chr3:70048863-70048943 8.03e-01 80 chr7:75431152-75431232 6.92e-06 27_[+5(1.57e-05)]_5_[+3(1.52e-05)]_\ 5_[+1(1.42e-05)]_19 chr19:15936733-15936813 5.24e-02 15_[+2(1.57e-05)]_57 chr2:156087912-156087992 5.91e-01 80 chr17:41400261-41400341 2.54e-01 80 chr6:27114542-27114622 2.70e-01 80 chr7:137908438-137908518 1.36e-03 28_[+1(5.82e-05)]_34_[+2(4.97e-05)]_\ 2 chrX:55137295-55137375 9.25e-06 21_[+5(1.57e-05)]_5_[+3(1.52e-05)]_\ 5_[+1(7.13e-05)]_25 chr2:87816019-87816099 6.95e-03 18_[+5(6.36e-05)]_54 chr19:45971196-45971276 2.82e-02 80 chr6:30783208-30783288 5.37e-01 80 chr4:128551476-128551556 1.53e-05 32_[+3(5.98e-05)]_12_[+2(1.57e-05)]_\ 1_[+4(1.52e-05)]_11 chr12:116994337-11699441 8.53e-04 16_[+2(3.27e-05)]_1_[+4(4.68e-05)]_\ 47 chr7:92778252-92778332 4.09e-05 31_[+5(1.57e-05)]_18_[+1(2.96e-05)]_\ 15 chr12:121455835-12145591 1.05e-02 37_[+1(2.96e-05)]_35 chr3:155579713-155579793 4.28e-01 80 chr8:29217298-29217378 9.80e-06 9_[+5(1.57e-05)]_5_[+3(1.52e-05)]_5_\ [+1(1.42e-05)]_37 chr1:222135905-222135985 2.44e-02 38_[+1(2.96e-05)]_34 chr21:9652255-9652335 5.43e-02 12_[+1(2.96e-05)]_60 chr2:12697963-12698043 3.69e-04 24_[+2(1.57e-05)]_1_[+4(1.52e-05)]_\ 39 chr3:9686037-9686117 6.98e-02 47_[+2(3.27e-05)]_25 chr22:21011190-21011270 4.35e-01 80 chr3:44482969-44483049 8.47e-05 19_[+2(1.57e-05)]_1_[+4(1.52e-05)]_\ 44 chr1:143121252-143121332 5.43e-02 7_[+1(2.96e-05)]_65 chr17:25435130-25435210 9.58e-02 44_[+2(4.97e-05)]_28 chr22:21996951-21997031 3.56e-01 80 chr7:121156432-121156512 3.54e-01 80 chr13:61158248-61158328 1.21e-01 80 chr1:33546777-33546857 9.53e-01 80 chr6:134612431-134612511 2.72e-02 60_[+2(1.57e-05)]_12 chr3:44479481-44479561 4.78e-04 24_[+3(5.98e-05)]_12_[+2(3.27e-05)]_\ 28 chr7:14040932-14041012 4.11e-02 5_[+2(3.27e-05)]_67 chr1:23807549-23807629 6.19e-01 80 chr1:18748633-18748713 9.65e-06 21_[+4(9.39e-05)]_24_[+3(7.63e-05)]_\ 5_[+1(1.42e-05)]_6 chr2:125751511-125751591 6.76e-04 38_[+3(4.51e-05)]_5_[+1(1.42e-05)]_\ 21 chr6:137692516-137692596 6.21e-01 80 chr5:70694853-70694933 1.04e-06 27_[+5(1.57e-05)]_18_[+1(1.42e-05)]_\ 19 chr5:67924040-67924120 6.73e-06 30_[+5(1.57e-05)]_5_[+3(1.52e-05)]_\ 5_[+1(2.96e-05)]_16 chr1:36864291-36864371 1.47e-02 34_[+2(1.57e-05)]_38 chr2:158103721-158103801 3.39e-02 1_[+2(9.61e-05)]_71 chr1:227038609-227038689 5.26e-06 26_[+5(1.57e-05)]_5_[+3(1.52e-05)]_\ 5_[+1(1.42e-05)]_20 chr6:31795530-31795610 5.22e-01 80 chr19:18476564-18476644 3.71e-01 80 chr4:154458993-154459073 3.39e-02 80 chr19:52290318-52290398 1.08e-03 53_[+5(1.57e-05)]_5_[+3(9.08e-05)]_\ 6 chr7:142411588-142411668 2.08e-05 17_[+5(1.57e-05)]_18_[+1(1.42e-05)]_\ 29 chr6:158176286-158176366 4.54e-07 3_[+3(5.98e-05)]_13_[+2(3.27e-05)]_\ 1_[+4(1.52e-05)]_27_[+1(4.27e-05)]_4 chr8:130091083-130091163 3.17e-02 51_[+1(2.96e-05)]_21 chr1:31611914-31611994 3.48e-05 32_[+3(5.98e-05)]_12_[+2(3.27e-05)]_\ 1_[+4(1.52e-05)]_11 chr5:138882861-138882941 2.56e-01 80 chr8:101734241-101734321 9.48e-01 80 chr6:16236417-16236497 5.52e-04 1_[+3(7.63e-05)]_24_[+2(1.57e-05)]_\ 39 chr3:5037103-5037183 8.04e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n09.farnam.hpc.yale.internal ********************************************************************************