******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/GATAD2B.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr10:35625482-35625562 1.0000 80 chr19:52431263-52431343 1.0000 80 chr8:130721806-130721886 1.0000 80 chr1:1136918-1136998 1.0000 80 chr9:140210717-140210797 1.0000 80 chr8:67560684-67560764 1.0000 80 chr11:62528451-62528531 1.0000 80 chr6:136652789-136652869 1.0000 80 chr20:31331354-31331434 1.0000 80 chr19:1266982-1267062 1.0000 80 chr17:79917749-79917829 1.0000 80 chr20:62948172-62948252 1.0000 80 chr4:122618281-122618361 1.0000 80 chr2:65216290-65216370 1.0000 80 chr7:150945908-150945988 1.0000 80 chr13:114145150-11414523 1.0000 80 chr20:39765961-39766041 1.0000 80 chr1:208042493-208042573 1.0000 80 chr18:9708093-9708173 1.0000 80 chr4:129731039-129731119 1.0000 80 chr1:154974223-154974303 1.0000 80 chr1:27692962-27693042 1.0000 80 chr2:172058396-172058476 1.0000 80 chr8:41347787-41347867 1.0000 80 chr1:15736409-15736489 1.0000 80 chr19:982825-982905 1.0000 80 chr4:1408943-1409023 1.0000 80 chr5:10761230-10761310 1.0000 80 chr10:82422458-82422538 1.0000 80 chr20:62526416-62526496 1.0000 80 chr6:2971398-2971478 1.0000 80 chr16:46865193-46865273 1.0000 80 chr19:14184254-14184334 1.0000 80 chr8:143808512-143808592 1.0000 80 chr19:56159748-56159828 1.0000 80 chr1:9836903-9836983 1.0000 80 chr19:1249118-1249198 1.0000 80 chr10:29022342-29022422 1.0000 80 chr19:1513136-1513216 1.0000 80 chr9:139838782-139838862 1.0000 80 chr17:73892675-73892755 1.0000 80 chr2:242674206-242674286 1.0000 80 chr3:197476643-197476723 1.0000 80 chr6:107435558-107435638 1.0000 80 chr8:145561851-145561931 1.0000 80 chr7:142552614-142552694 1.0000 80 chr2:201374870-201374950 1.0000 80 chr17:43394100-43394180 1.0000 80 chr3:171695719-171695799 1.0000 80 chr17:57409196-57409276 1.0000 80 chr7:151216315-151216395 1.0000 80 chr16:66785638-66785718 1.0000 80 chr5:74532795-74532875 1.0000 80 chr19:17666585-17666665 1.0000 80 chr1:1551273-1551353 1.0000 80 chr3:45635600-45635680 1.0000 80 chr17:48891134-48891214 1.0000 80 chr17:6918124-6918204 1.0000 80 chr11:568826-568906 1.0000 80 chr1:225998016-225998096 1.0000 80 chr16:11349795-11349875 1.0000 80 chr1:32826434-32826514 1.0000 80 chr8:144349380-144349460 1.0000 80 chr13:41363565-41363645 1.0000 80 chr17:36886353-36886433 1.0000 80 chr11:64880104-64880184 1.0000 80 chr10:62703787-62703867 1.0000 80 chr7:155137626-155137706 1.0000 80 chr12:48099366-48099446 1.0000 80 chr12:117109978-11711005 1.0000 80 chr11:64126554-64126634 1.0000 80 chr3:152880064-152880144 1.0000 80 chr1:31755382-31755462 1.0000 80 chr9:131182576-131182656 1.0000 80 chr6:52226957-52227037 1.0000 80 chr3:9684614-9684694 1.0000 80 chr9:100747147-100747227 1.0000 80 chr12:132970768-13297084 1.0000 80 chr7:150624380-150624460 1.0000 80 chr20:52530639-52530719 1.0000 80 chr19:17346583-17346663 1.0000 80 chr3:133646469-133646549 1.0000 80 chr2:101034030-101034110 1.0000 80 chr1:36621883-36621963 1.0000 80 chr16:88869946-88870026 1.0000 80 chr4:110354814-110354894 1.0000 80 chr16:30406776-30406856 1.0000 80 chr17:42061422-42061502 1.0000 80 chr7:105517193-105517273 1.0000 80 chr3:171094505-171094585 1.0000 80 chr1:153575384-153575464 1.0000 80 chr1:184738494-184738574 1.0000 80 chr4:980890-980970 1.0000 80 chr1:227058193-227058273 1.0000 80 chr17:78234093-78234173 1.0000 80 chr6:35465121-35465201 1.0000 80 chr18:9857654-9857734 1.0000 80 chr15:28983030-28983110 1.0000 80 chr1:228674403-228674483 1.0000 80 chr16:84651611-84651691 1.0000 80 chr7:155089266-155089346 1.0000 80 chr1:32324811-32324891 1.0000 80 chr6:119215172-119215252 1.0000 80 chr1:32966320-32966400 1.0000 80 chr17:79480047-79480127 1.0000 80 chr7:116166156-116166236 1.0000 80 chr22:49893880-49893960 1.0000 80 chr1:212606262-212606342 1.0000 80 chr16:68298258-68298338 1.0000 80 chr6:157695816-157695896 1.0000 80 chr11:65585511-65585591 1.0000 80 chr6:146864856-146864936 1.0000 80 chr11:46368949-46369029 1.0000 80 chr3:196439239-196439319 1.0000 80 chr1:227506345-227506425 1.0000 80 chr1:142816366-142816446 1.0000 80 chr17:33446817-33446897 1.0000 80 chr7:77464016-77464096 1.0000 80 chr6:135302120-135302200 1.0000 80 chr9:140190082-140190162 1.0000 80 chr11:64611988-64612068 1.0000 80 chr19:49242374-49242454 1.0000 80 chr6:157802225-157802305 1.0000 80 chr19:1174198-1174278 1.0000 80 chr11:12695703-12695783 1.0000 80 chr7:100081096-100081176 1.0000 80 chr8:38644662-38644742 1.0000 80 chr3:194980896-194980976 1.0000 80 chr6:2245745-2245825 1.0000 80 chr1:23881349-23881429 1.0000 80 chr2:136456577-136456657 1.0000 80 chr22:17652532-17652612 1.0000 80 chr21:45139104-45139184 1.0000 80 chr1:109940370-109940450 1.0000 80 chr2:201983279-201983359 1.0000 80 chr14:81900763-81900843 1.0000 80 chr17:60781403-60781483 1.0000 80 chr11:59522885-59522965 1.0000 80 chr20:31350242-31350322 1.0000 80 chr10:72575617-72575697 1.0000 80 chr7:26437932-26438012 1.0000 80 chr2:113385365-113385445 1.0000 80 chr19:1240399-1240479 1.0000 80 chr4:57774978-57775058 1.0000 80 chr19:2841105-2841185 1.0000 80 chr19:56186691-56186771 1.0000 80 chr4:39046756-39046836 1.0000 80 chr6:138725454-138725534 1.0000 80 chr3:42695925-42696005 1.0000 80 chr7:130790878-130790958 1.0000 80 chr6:160148621-160148701 1.0000 80 chr16:30669289-30669369 1.0000 80 chr6:158402686-158402766 1.0000 80 chr18:2655747-2655827 1.0000 80 chr16:725538-725618 1.0000 80 chr9:99417430-99417510 1.0000 80 chr12:133287259-13328733 1.0000 80 chr1:25870270-25870350 1.0000 80 chr11:65153910-65153990 1.0000 80 chr17:72983879-72983959 1.0000 80 chr17:78075279-78075359 1.0000 80 chr19:49617560-49617640 1.0000 80 chr10:70167044-70167124 1.0000 80 chr7:7606583-7606663 1.0000 80 chr1:26488445-26488525 1.0000 80 chr1:117909535-117909615 1.0000 80 chr9:123964355-123964435 1.0000 80 chr8:145064320-145064400 1.0000 80 chr6:35656422-35656502 1.0000 80 chr7:100609581-100609661 1.0000 80 chr7:101457531-101457611 1.0000 80 chr6:2987563-2987643 1.0000 80 chr11:33278806-33278886 1.0000 80 chr16:2255787-2255867 1.0000 80 chr2:20850872-20850952 1.0000 80 chr17:65560062-65560142 1.0000 80 chr12:116715791-11671587 1.0000 80 chr19:12893358-12893438 1.0000 80 chr12:110318272-11031835 1.0000 80 chr10:6205741-6205821 1.0000 80 chr3:45266609-45266689 1.0000 80 chr15:65282156-65282236 1.0000 80 chr11:62380040-62380120 1.0000 80 chr1:249169074-249169154 1.0000 80 chr11:67056522-67056602 1.0000 80 chr9:100174187-100174267 1.0000 80 chr19:680238-680318 1.0000 80 chr6:34759781-34759861 1.0000 80 chr7:43623030-43623110 1.0000 80 chr20:22412204-22412284 1.0000 80 chr1:59389819-59389899 1.0000 80 chr5:34656377-34656457 1.0000 80 chr19:41222953-41223033 1.0000 80 chr1:211752116-211752196 1.0000 80 chr6:49703807-49703887 1.0000 80 chr2:183903160-183903240 1.0000 80 chr3:47205114-47205194 1.0000 80 chr1:24153199-24153279 1.0000 80 chr21:40720837-40720917 1.0000 80 chr16:89160196-89160276 1.0000 80 chr6:36648326-36648406 1.0000 80 chr19:13961395-13961475 1.0000 80 chr6:16238748-16238828 1.0000 80 chr4:1341166-1341246 1.0000 80 chr1:26856333-26856413 1.0000 80 chr2:64836575-64836655 1.0000 80 chr1:29562936-29563016 1.0000 80 chr4:178230787-178230867 1.0000 80 chr3:49377523-49377603 1.0000 80 chr8:21966945-21967025 1.0000 80 chr5:53813488-53813568 1.0000 80 chr7:50423599-50423679 1.0000 80 chr3:140950634-140950714 1.0000 80 chr1:7765104-7765184 1.0000 80 chr19:1401590-1401670 1.0000 80 chr1:229694375-229694455 1.0000 80 chr6:163834575-163834655 1.0000 80 chr7:23509365-23509445 1.0000 80 chr16:2723252-2723332 1.0000 80 chr6:44225313-44225393 1.0000 80 chr9:140195805-140195885 1.0000 80 chr12:111834922-11183500 1.0000 80 chr19:13049035-13049115 1.0000 80 chr6:44044361-44044441 1.0000 80 chr7:29788242-29788322 1.0000 80 chr19:32896861-32896941 1.0000 80 chr5:96268625-96268705 1.0000 80 chr9:132372874-132372954 1.0000 80 chr6:292011-292091 1.0000 80 chr1:1709986-1710066 1.0000 80 chr16:88522283-88522363 1.0000 80 chr7:127775857-127775937 1.0000 80 chr12:93771994-93772074 1.0000 80 chr3:196696716-196696796 1.0000 80 chr17:79451471-79451551 1.0000 80 chr12:6904373-6904453 1.0000 80 chr4:17513746-17513826 1.0000 80 chr9:139010383-139010463 1.0000 80 chr17:77785318-77785398 1.0000 80 chr2:55276261-55276341 1.0000 80 chr1:54872269-54872349 1.0000 80 chr12:122906905-12290698 1.0000 80 chr5:175843528-175843608 1.0000 80 chr7:138916401-138916481 1.0000 80 chr7:6629595-6629675 1.0000 80 chr4:2757905-2757985 1.0000 80 chr2:46769621-46769701 1.0000 80 chr2:172963900-172963980 1.0000 80 chr1:26202084-26202164 1.0000 80 chr2:30370805-30370885 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_GATAD2B/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/GATAD2B.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.14 C 0.346 G 0.367 T 0.146 Background letter frequencies (from file dataset with add-one prior applied): A 0.14 C 0.346 G 0.367 T 0.146 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF ATMKATMT MEME-1 width = 8 sites = 34 llr = 364 E-value = 1.9e-036 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATMKATMT MEME-1 Description -------------------------------------------------------------------------------- Simplified A a:5:a:52 pos.-specific C ::5:::5: probability G :::5:::2 matrix T :a:4:a:6 bits 2.8 * ** 2.5 ** ** 2.3 ** ** 2.0 ** ** Relative 1.7 ** ** Entropy 1.4 ** ** (15.4 bits) 1.1 *** **** 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel ATAGATCT consensus CT A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATMKATMT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:29788242-29788322 65 6.13e-07 gagatagatg atagatat gatagatg chr17:65560062-65560142 17 6.13e-07 tagatgattg atagatat taatagataa chr18:9857654-9857734 73 6.13e-07 atagatagat aTAGATAT chr7:150624380-150624460 54 6.13e-07 tggatgattg atagatat aagatagata chr8:130721806-130721886 72 6.13e-07 agatagatag atagatat g chr12:6904373-6904453 73 5.30e-06 aatctatttt atctatct chr1:24153199-24153279 73 5.30e-06 ctatctatct atctatct chr1:59389819-59389899 34 5.30e-06 catctgcctt atctatct aatttatcta chr20:22412204-22412284 31 5.30e-06 ctatctatct atctatct atctatctat chr2:136456577-136456657 32 5.30e-06 agatagatag atagataa gatagataag chr22:49893880-49893960 40 5.30e-06 aatagattag atagataa tagattagat chr20:52530639-52530719 4 5.30e-06 tct atctatct atctatctat chr1:31755382-31755462 34 5.30e-06 ctatctatct atctatct atctatctat chr12:117109978-11711005 24 5.30e-06 ttgatagatg atagataa gatagatgat chr1:32826434-32826514 68 5.30e-06 tagatgatag atagataa gatag chr3:171695719-171695799 31 5.30e-06 ctgtctatct atctatct atctatctat chr10:29022342-29022422 30 5.30e-06 tctattatct atctatct atctatctat chr1:9836903-9836983 31 5.30e-06 ctatctatct atctatct atctatctat chr10:82422458-82422538 6 5.30e-06 tacct atctatct atctatctat chr2:172058396-172058476 33 5.30e-06 ctatctatct atctatct atctatctat chr6:136652789-136652869 33 5.30e-06 atcatctatc atctatct aatctatcat chr11:62528451-62528531 14 5.30e-06 ctatctatct atctatct atctatctat chr8:67560684-67560764 35 5.30e-06 ctaatctgtc atctatct gatctaatct chr19:52431263-52431343 18 5.30e-06 ctatctatct atctatct aatctgtcta chr3:9684614-9684694 27 9.41e-06 aagctagttt atcgatct gggtggtacc chr1:249169074-249169154 35 1.28e-05 atagagatag atagatag atagatagat chr2:113385365-113385445 54 1.28e-05 agatagatag atagatag atagatagat chr1:184738494-184738574 26 1.28e-05 agatagatag atagatag atagatagat chr1:153575384-153575464 27 1.28e-05 agatagatag atagatag atagatagat chr3:171094505-171094585 32 1.28e-05 tagatagatg atagatag atagatagat chr17:48891134-48891214 39 1.28e-05 gatagattag atagatag atgatggata chr3:196439239-196439319 61 1.70e-05 GTCCCAGCCG ATAAATCT GGGGCAGCGC chr1:32324811-32324891 34 3.33e-05 cagataggtg atagatta gatagaagat chr6:135302120-135302200 36 4.53e-05 TACACTGATA AAAGATAA TACTTTAGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATMKATMT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:29788242-29788322 6.1e-07 64_[+1]_8 chr17:65560062-65560142 6.1e-07 16_[+1]_56 chr18:9857654-9857734 6.1e-07 72_[+1] chr7:150624380-150624460 6.1e-07 53_[+1]_19 chr8:130721806-130721886 6.1e-07 71_[+1]_1 chr12:6904373-6904453 5.3e-06 72_[+1] chr1:24153199-24153279 5.3e-06 72_[+1] chr1:59389819-59389899 5.3e-06 33_[+1]_39 chr20:22412204-22412284 5.3e-06 30_[+1]_42 chr2:136456577-136456657 5.3e-06 31_[+1]_41 chr22:49893880-49893960 5.3e-06 39_[+1]_33 chr20:52530639-52530719 5.3e-06 3_[+1]_69 chr1:31755382-31755462 5.3e-06 33_[+1]_39 chr12:117109978-11711005 5.3e-06 23_[+1]_49 chr1:32826434-32826514 5.3e-06 67_[+1]_5 chr3:171695719-171695799 5.3e-06 30_[+1]_42 chr10:29022342-29022422 5.3e-06 29_[+1]_43 chr1:9836903-9836983 5.3e-06 30_[+1]_42 chr10:82422458-82422538 5.3e-06 5_[+1]_67 chr2:172058396-172058476 5.3e-06 32_[+1]_40 chr6:136652789-136652869 5.3e-06 32_[+1]_40 chr11:62528451-62528531 5.3e-06 13_[+1]_59 chr8:67560684-67560764 5.3e-06 34_[+1]_38 chr19:52431263-52431343 5.3e-06 17_[+1]_55 chr3:9684614-9684694 9.4e-06 26_[+1]_46 chr1:249169074-249169154 1.3e-05 34_[+1]_38 chr2:113385365-113385445 1.3e-05 53_[+1]_19 chr1:184738494-184738574 1.3e-05 25_[+1]_47 chr1:153575384-153575464 1.3e-05 26_[+1]_46 chr3:171094505-171094585 1.3e-05 31_[+1]_41 chr17:48891134-48891214 1.3e-05 38_[+1]_34 chr3:196439239-196439319 1.7e-05 60_[+1]_12 chr1:32324811-32324891 3.3e-05 33_[+1]_39 chr6:135302120-135302200 4.5e-05 35_[+1]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATMKATMT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATMKATMT width=8 seqs=34 chr7:29788242-29788322 ( 65) ATAGATAT 1 chr17:65560062-65560142 ( 17) ATAGATAT 1 chr18:9857654-9857734 ( 73) ATAGATAT 1 chr7:150624380-150624460 ( 54) ATAGATAT 1 chr8:130721806-130721886 ( 72) ATAGATAT 1 chr12:6904373-6904453 ( 73) ATCTATCT 1 chr1:24153199-24153279 ( 73) ATCTATCT 1 chr1:59389819-59389899 ( 34) ATCTATCT 1 chr20:22412204-22412284 ( 31) ATCTATCT 1 chr2:136456577-136456657 ( 32) ATAGATAA 1 chr22:49893880-49893960 ( 40) ATAGATAA 1 chr20:52530639-52530719 ( 4) ATCTATCT 1 chr1:31755382-31755462 ( 34) ATCTATCT 1 chr12:117109978-11711005 ( 24) ATAGATAA 1 chr1:32826434-32826514 ( 68) ATAGATAA 1 chr3:171695719-171695799 ( 31) ATCTATCT 1 chr10:29022342-29022422 ( 30) ATCTATCT 1 chr1:9836903-9836983 ( 31) ATCTATCT 1 chr10:82422458-82422538 ( 6) ATCTATCT 1 chr2:172058396-172058476 ( 33) ATCTATCT 1 chr6:136652789-136652869 ( 33) ATCTATCT 1 chr11:62528451-62528531 ( 14) ATCTATCT 1 chr8:67560684-67560764 ( 35) ATCTATCT 1 chr19:52431263-52431343 ( 18) ATCTATCT 1 chr3:9684614-9684694 ( 27) ATCGATCT 1 chr1:249169074-249169154 ( 35) ATAGATAG 1 chr2:113385365-113385445 ( 54) ATAGATAG 1 chr1:184738494-184738574 ( 26) ATAGATAG 1 chr1:153575384-153575464 ( 27) ATAGATAG 1 chr3:171094505-171094585 ( 32) ATAGATAG 1 chr17:48891134-48891214 ( 39) ATAGATAG 1 chr3:196439239-196439319 ( 61) ATAAATCT 1 chr1:32324811-32324891 ( 34) ATAGATTA 1 chr6:135302120-135302200 ( 36) AAAGATAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATMKATMT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8329 E= 1.9e-036 283 -1173 -1173 -1173 -225 -1173 -1173 273 192 44 -1173 -1173 -225 -1173 53 159 283 -1173 -1173 -1173 -1173 -1173 -1173 277 175 53 -1173 -231 33 -1173 -106 214 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATMKATMT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 34 E= 1.9e-036 1.000000 0.000000 0.000000 0.000000 0.029412 0.000000 0.000000 0.970588 0.529412 0.470588 0.000000 0.000000 0.029412 0.000000 0.529412 0.441176 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.470588 0.500000 0.000000 0.029412 0.176471 0.000000 0.176471 0.647059 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATMKATMT MEME-1 regular expression -------------------------------------------------------------------------------- AT[AC][GT]AT[CA]T -------------------------------------------------------------------------------- Time 5.09 secs. ******************************************************************************** ******************************************************************************** MOTIF KMTAKMTA MEME-2 width = 8 sites = 37 llr = 376 E-value = 5.8e-033 ******************************************************************************** -------------------------------------------------------------------------------- Motif KMTAKMTA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :5:a:5:a pos.-specific C :52::5:: probability G 5:::5::: matrix T 5:8:4:a: bits 2.8 * ** 2.5 * ** 2.3 * ** 2.0 * ** Relative 1.7 ** ** Entropy 1.4 ** ** (14.6 bits) 1.1 **** *** 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GATAGATA consensus TC TC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KMTAKMTA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr10:29022342-29022422 16 1.91e-06 atctatcatt tatatcta ttatctatct chr7:29788242-29788322 1 5.19e-06 . gatagata ggcagataga chr1:249169074-249169154 12 5.19e-06 TTCCAaggta gatagata ggtagataga chr17:65560062-65560142 69 5.19e-06 agattaagta gatagata gatg chr2:113385365-113385445 73 5.19e-06 tagatagata gatagata chr2:136456577-136456657 23 5.19e-06 tagatagata gatagata gatagataag chr18:9857654-9857734 30 5.19e-06 atagatagat gatagata gatagataga chr1:184738494-184738574 17 5.19e-06 TCTCTGATta gatagata gatagataga chr1:153575384-153575464 18 5.19e-06 GATAGCgata gatagata gatagataga chr3:171094505-171094585 20 5.19e-06 TATACagata gatagata gatgatagat chr7:150624380-150624460 16 5.19e-06 atgattgatt gatagata caaagaaaat chr12:117109978-11711005 43 5.19e-06 atagatgatt gatagata agatagattg chr1:32826434-32826514 24 5.19e-06 tagatagata gatagata gatagataga chr17:48891134-48891214 73 5.19e-06 tgatagatta gatagata chr8:130721806-130721886 20 5.19e-06 atagatgata gatagata gatgatagat chr12:6904373-6904453 56 8.42e-06 atctaatctg tctatcta atctatttta chr1:24153199-24153279 58 8.42e-06 ctatctatca tctatcta tctatctatc chr1:59389819-59389899 11 8.42e-06 atctatcttg tctatcta cctatcatct chr20:22412204-22412284 20 8.42e-06 tatctatcta tctatcta tctatctatc chr20:52530639-52530719 21 8.42e-06 tatctatcta tctatcta tcatctatca chr1:31755382-31755462 43 8.42e-06 tatctatcta tctatcta tctatctatc chr3:171695719-171695799 52 8.42e-06 tatctatcta tctatcta tctatctatc chr1:9836903-9836983 20 8.42e-06 tcagcattta tctatcta tctatctatc chr10:82422458-82422538 30 8.42e-06 ctatctatca tctatcta tcatctatct chr2:172058396-172058476 22 8.42e-06 catctatcta tctatcta tctatctatc chr6:136652789-136652869 7 8.42e-06 ctatca tctatcta tctaatctat chr11:62528451-62528531 23 8.42e-06 tatctatcta tctatcta tctatctatc chr19:52431263-52431343 3 8.42e-06 ta tctatcta tctatctatc chr22:49893880-49893960 64 8.84e-06 agatagatga tacatata ttagataga chr7:50423599-50423679 11 1.70e-05 CTGTGAAAAT GCTAGATA AGGACTTTTT chr6:2987563-2987643 50 2.07e-05 cagctgcaca tacagata aagcttcact chr6:49703807-49703887 8 3.87e-05 AGATTAG GACAGATA AGATAAGGAG chr1:32324811-32324891 22 3.87e-05 taagataaat gacagata ggtgatagat chr8:67560684-67560764 16 4.63e-05 catccatccg tccatcta cctaatctgt chr11:64880104-64880184 57 8.27e-05 CAGGCGGCGC TCTACCTA CTGCCGGCGC chr17:77785318-77785398 63 9.87e-05 GCGTGGGAGG GCCAGCTA GAGTGGGGGA chr11:46368949-46369029 30 9.87e-05 CAGCGGCCCG GCCAGCTA TGCGGGGTCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KMTAKMTA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:29022342-29022422 1.9e-06 15_[+2]_57 chr7:29788242-29788322 5.2e-06 [+2]_72 chr1:249169074-249169154 5.2e-06 11_[+2]_61 chr17:65560062-65560142 5.2e-06 68_[+2]_4 chr2:113385365-113385445 5.2e-06 72_[+2] chr2:136456577-136456657 5.2e-06 22_[+2]_50 chr18:9857654-9857734 5.2e-06 29_[+2]_43 chr1:184738494-184738574 5.2e-06 16_[+2]_56 chr1:153575384-153575464 5.2e-06 17_[+2]_55 chr3:171094505-171094585 5.2e-06 19_[+2]_53 chr7:150624380-150624460 5.2e-06 15_[+2]_57 chr12:117109978-11711005 5.2e-06 42_[+2]_30 chr1:32826434-32826514 5.2e-06 23_[+2]_49 chr17:48891134-48891214 5.2e-06 72_[+2] chr8:130721806-130721886 5.2e-06 19_[+2]_53 chr12:6904373-6904453 8.4e-06 55_[+2]_17 chr1:24153199-24153279 8.4e-06 57_[+2]_15 chr1:59389819-59389899 8.4e-06 10_[+2]_62 chr20:22412204-22412284 8.4e-06 19_[+2]_53 chr20:52530639-52530719 8.4e-06 20_[+2]_52 chr1:31755382-31755462 8.4e-06 42_[+2]_30 chr3:171695719-171695799 8.4e-06 51_[+2]_21 chr1:9836903-9836983 8.4e-06 19_[+2]_53 chr10:82422458-82422538 8.4e-06 29_[+2]_43 chr2:172058396-172058476 8.4e-06 21_[+2]_51 chr6:136652789-136652869 8.4e-06 6_[+2]_66 chr11:62528451-62528531 8.4e-06 22_[+2]_50 chr19:52431263-52431343 8.4e-06 2_[+2]_70 chr22:49893880-49893960 8.8e-06 63_[+2]_9 chr7:50423599-50423679 1.7e-05 10_[+2]_62 chr6:2987563-2987643 2.1e-05 49_[+2]_23 chr6:49703807-49703887 3.9e-05 7_[+2]_65 chr1:32324811-32324891 3.9e-05 21_[+2]_51 chr8:67560684-67560764 4.6e-05 15_[+2]_57 chr11:64880104-64880184 8.3e-05 56_[+2]_16 chr17:77785318-77785398 9.9e-05 62_[+2]_10 chr11:46368949-46369029 9.9e-05 29_[+2]_43 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KMTAKMTA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KMTAKMTA width=8 seqs=37 chr10:29022342-29022422 ( 16) TATATCTA 1 chr7:29788242-29788322 ( 1) GATAGATA 1 chr1:249169074-249169154 ( 12) GATAGATA 1 chr17:65560062-65560142 ( 69) GATAGATA 1 chr2:113385365-113385445 ( 73) GATAGATA 1 chr2:136456577-136456657 ( 23) GATAGATA 1 chr18:9857654-9857734 ( 30) GATAGATA 1 chr1:184738494-184738574 ( 17) GATAGATA 1 chr1:153575384-153575464 ( 18) GATAGATA 1 chr3:171094505-171094585 ( 20) GATAGATA 1 chr7:150624380-150624460 ( 16) GATAGATA 1 chr12:117109978-11711005 ( 43) GATAGATA 1 chr1:32826434-32826514 ( 24) GATAGATA 1 chr17:48891134-48891214 ( 73) GATAGATA 1 chr8:130721806-130721886 ( 20) GATAGATA 1 chr12:6904373-6904453 ( 56) TCTATCTA 1 chr1:24153199-24153279 ( 58) TCTATCTA 1 chr1:59389819-59389899 ( 11) TCTATCTA 1 chr20:22412204-22412284 ( 20) TCTATCTA 1 chr20:52530639-52530719 ( 21) TCTATCTA 1 chr1:31755382-31755462 ( 43) TCTATCTA 1 chr3:171695719-171695799 ( 52) TCTATCTA 1 chr1:9836903-9836983 ( 20) TCTATCTA 1 chr10:82422458-82422538 ( 30) TCTATCTA 1 chr2:172058396-172058476 ( 22) TCTATCTA 1 chr6:136652789-136652869 ( 7) TCTATCTA 1 chr11:62528451-62528531 ( 23) TCTATCTA 1 chr19:52431263-52431343 ( 3) TCTATCTA 1 chr22:49893880-49893960 ( 64) TACATATA 1 chr7:50423599-50423679 ( 11) GCTAGATA 1 chr6:2987563-2987643 ( 50) TACAGATA 1 chr6:49703807-49703887 ( 8) GACAGATA 1 chr1:32324811-32324891 ( 22) GACAGATA 1 chr8:67560684-67560764 ( 16) TCCATCTA 1 chr11:64880104-64880184 ( 57) TCTACCTA 1 chr17:77785318-77785398 ( 63) GCCAGCTA 1 chr11:46368949-46369029 ( 30) GCCAGCTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KMTAKMTA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.7488 E= 5.8e-033 -1185 -1185 48 173 187 49 -1185 -1185 -1185 -87 -1185 247 283 -1185 -1185 -1185 -1185 -367 56 156 187 49 -1185 -1185 -1185 -1185 -1185 277 283 -1185 -1185 -1185 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KMTAKMTA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 37 E= 5.8e-033 0.000000 0.000000 0.513514 0.486486 0.513514 0.486486 0.000000 0.000000 0.000000 0.189189 0.000000 0.810811 1.000000 0.000000 0.000000 0.000000 0.000000 0.027027 0.540541 0.432432 0.513514 0.486486 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KMTAKMTA MEME-2 regular expression -------------------------------------------------------------------------------- [GT][AC]TA[GT][AC]TA -------------------------------------------------------------------------------- Time 8.85 secs. ******************************************************************************** ******************************************************************************** MOTIF WKATMKAT MEME-3 width = 8 sites = 32 llr = 338 E-value = 8.5e-031 ******************************************************************************** -------------------------------------------------------------------------------- Motif WKATMKAT MEME-3 Description -------------------------------------------------------------------------------- Simplified A 52a:5:a: pos.-specific C 1:::5::: probability G :5:::5:: matrix T 43:a:5:a bits 2.8 * ** 2.5 ** ** 2.3 ** ** 2.0 ** ** Relative 1.7 ** ** Entropy 1.4 ** ** (15.2 bits) 1.1 * ****** 0.8 * ****** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel AGATAGAT consensus TT CT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WKATMKAT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:171094505-171094585 5 9.63e-07 ACAT AAATATAT ACagatagat chr2:172058396-172058476 67 2.47e-06 atcatcaatc atatctat tatcta chr1:24153199-24153279 44 3.37e-06 aactagaatt ttatctat ctatcatcta chr1:59389819-59389899 45 3.37e-06 tctatctaat ttatctat ttatcttatc chr20:22412204-22412284 9 3.37e-06 ctatctat ttatctat ctatctatct chr20:52530639-52530719 69 3.37e-06 atcatctatc ttatctat gtat chr19:52431263-52431343 72 3.37e-06 tctatctaat ttatctat c chr7:29788242-29788322 23 4.90e-06 gatagataga agatagat gatagagata chr1:249169074-249169154 73 4.90e-06 atagatagat agatagat chr17:65560062-65560142 4 4.90e-06 aat agatagat gattgataga chr2:113385365-113385445 64 4.90e-06 atagatagat agatagat agatagata chr2:136456577-136456657 10 4.90e-06 tagatagat agatagat agatagatag chr22:49893880-49893960 54 4.90e-06 ataatagatt agatagat gatacatata chr1:32324811-32324891 48 4.90e-06 attagataga agatagat tagatagatg chr18:9857654-9857734 22 4.90e-06 atagatagat agatagat gatagataga chr1:184738494-184738574 36 4.90e-06 atagatagat agatagat agatagatag chr1:153575384-153575464 37 4.90e-06 atagatagat agatagat agatagatag chr7:150624380-150624460 67 4.90e-06 gatataagat agatagat agatac chr12:117109978-11711005 51 4.90e-06 ttgatagata agatagat tgatgaaaga chr1:32826434-32826514 35 4.90e-06 atagatagat agatagat agatagatag chr8:130721806-130721886 34 4.90e-06 gatagatgat agatagat agatagatag chr17:48891134-48891214 28 7.98e-06 agatgatagg tgatagat tagatagata chr12:6904373-6904453 20 9.55e-06 tctatttacc taatctat caatctatca chr10:29022342-29022422 4 9.55e-06 atc taatctat catttatatc chr10:82422458-82422538 47 9.55e-06 atcatctatc taatctat ctaatctgtc chr6:136652789-136652869 17 9.55e-06 tctatctatc taatctat catctatcat chr8:67560684-67560764 47 9.55e-06 ctatctgatc taatctat ccaatgtatc chr1:31755382-31755462 72 2.37e-05 atctatctat ctatctat c chr3:171695719-171695799 61 2.37e-05 atctatctat ctatctat ctTTAATTCG chr1:9836903-9836983 49 2.37e-05 atctatctat ctatctat ctatcagcat chr11:62528451-62528531 32 2.37e-05 atctatctat ctatctat ctatctGttg chr14:81900763-81900843 24 5.06e-05 ATCTGAGACT TGAAAGAT TGCATCTGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WKATMKAT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:171094505-171094585 9.6e-07 4_[+3]_68 chr2:172058396-172058476 2.5e-06 66_[+3]_6 chr1:24153199-24153279 3.4e-06 43_[+3]_29 chr1:59389819-59389899 3.4e-06 44_[+3]_28 chr20:22412204-22412284 3.4e-06 8_[+3]_64 chr20:52530639-52530719 3.4e-06 68_[+3]_4 chr19:52431263-52431343 3.4e-06 71_[+3]_1 chr7:29788242-29788322 4.9e-06 22_[+3]_50 chr1:249169074-249169154 4.9e-06 72_[+3] chr17:65560062-65560142 4.9e-06 3_[+3]_69 chr2:113385365-113385445 4.9e-06 63_[+3]_9 chr2:136456577-136456657 4.9e-06 9_[+3]_63 chr22:49893880-49893960 4.9e-06 53_[+3]_19 chr1:32324811-32324891 4.9e-06 47_[+3]_25 chr18:9857654-9857734 4.9e-06 21_[+3]_51 chr1:184738494-184738574 4.9e-06 35_[+3]_37 chr1:153575384-153575464 4.9e-06 36_[+3]_36 chr7:150624380-150624460 4.9e-06 66_[+3]_6 chr12:117109978-11711005 4.9e-06 50_[+3]_22 chr1:32826434-32826514 4.9e-06 34_[+3]_38 chr8:130721806-130721886 4.9e-06 33_[+3]_39 chr17:48891134-48891214 8e-06 27_[+3]_45 chr12:6904373-6904453 9.5e-06 19_[+3]_53 chr10:29022342-29022422 9.5e-06 3_[+3]_69 chr10:82422458-82422538 9.5e-06 46_[+3]_26 chr6:136652789-136652869 9.5e-06 16_[+3]_56 chr8:67560684-67560764 9.5e-06 46_[+3]_26 chr1:31755382-31755462 2.4e-05 71_[+3]_1 chr3:171695719-171695799 2.4e-05 60_[+3]_12 chr1:9836903-9836983 2.4e-05 48_[+3]_24 chr11:62528451-62528531 2.4e-05 31_[+3]_41 chr14:81900763-81900843 5.1e-05 23_[+3]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WKATMKAT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WKATMKAT width=8 seqs=32 chr3:171094505-171094585 ( 5) AAATATAT 1 chr2:172058396-172058476 ( 67) ATATCTAT 1 chr1:24153199-24153279 ( 44) TTATCTAT 1 chr1:59389819-59389899 ( 45) TTATCTAT 1 chr20:22412204-22412284 ( 9) TTATCTAT 1 chr20:52530639-52530719 ( 69) TTATCTAT 1 chr19:52431263-52431343 ( 72) TTATCTAT 1 chr7:29788242-29788322 ( 23) AGATAGAT 1 chr1:249169074-249169154 ( 73) AGATAGAT 1 chr17:65560062-65560142 ( 4) AGATAGAT 1 chr2:113385365-113385445 ( 64) AGATAGAT 1 chr2:136456577-136456657 ( 10) AGATAGAT 1 chr22:49893880-49893960 ( 54) AGATAGAT 1 chr1:32324811-32324891 ( 48) AGATAGAT 1 chr18:9857654-9857734 ( 22) AGATAGAT 1 chr1:184738494-184738574 ( 36) AGATAGAT 1 chr1:153575384-153575464 ( 37) AGATAGAT 1 chr7:150624380-150624460 ( 67) AGATAGAT 1 chr12:117109978-11711005 ( 51) AGATAGAT 1 chr1:32826434-32826514 ( 35) AGATAGAT 1 chr8:130721806-130721886 ( 34) AGATAGAT 1 chr17:48891134-48891214 ( 28) TGATAGAT 1 chr12:6904373-6904453 ( 20) TAATCTAT 1 chr10:29022342-29022422 ( 4) TAATCTAT 1 chr10:82422458-82422538 ( 47) TAATCTAT 1 chr6:136652789-136652869 ( 17) TAATCTAT 1 chr8:67560684-67560764 ( 47) TAATCTAT 1 chr1:31755382-31755462 ( 72) CTATCTAT 1 chr3:171695719-171695799 ( 61) CTATCTAT 1 chr1:9836903-9836983 ( 49) CTATCTAT 1 chr11:62528451-62528531 ( 32) CTATCTAT 1 chr14:81900763-81900843 ( 24) TGAAAGAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WKATMKAT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.4765 E= 8.5e-031 183 -147 -1164 136 42 -1164 44 109 283 -1164 -1164 -1164 -217 -1164 -1164 273 192 44 -1164 -1164 -1164 -1164 44 177 283 -1164 -1164 -1164 -1164 -1164 -1164 277 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WKATMKAT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 8.5e-031 0.500000 0.125000 0.000000 0.375000 0.187500 0.000000 0.500000 0.312500 1.000000 0.000000 0.000000 0.000000 0.031250 0.000000 0.000000 0.968750 0.531250 0.468750 0.000000 0.000000 0.000000 0.000000 0.500000 0.500000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WKATMKAT MEME-3 regular expression -------------------------------------------------------------------------------- [AT][GT]AT[AC][GT]AT -------------------------------------------------------------------------------- Time 12.48 secs. ******************************************************************************** ******************************************************************************** MOTIF TAKMTARA MEME-4 width = 8 sites = 36 llr = 348 E-value = 5.6e-024 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAKMTARA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :9:5:936 pos.-specific C :::5:::2 probability G ::5:::5: matrix T a151a122 bits 2.8 * * 2.5 * ** 2.3 ** ** 2.0 ** ** Relative 1.7 ** ** Entropy 1.4 ** ** (14.0 bits) 1.1 *** ** * 0.8 ****** * 0.6 ******** 0.3 ******** 0.0 -------- Multilevel TAGATAGA consensus TC AC sequence TT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAKMTARA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr10:82422458-82422538 71 1.62e-06 tgtctatgtc tatctaAA AA chr7:29788242-29788322 15 3.76e-06 gataggcaga tagataga agatagatga chr1:249169074-249169154 22 3.76e-06 gatagatagg tagataga gatagataga chr17:65560062-65560142 45 3.76e-06 gagagatgga tagataga ttagctagat chr2:113385365-113385445 43 3.76e-06 TTAAAAAAAa tagataga tagatagata chr2:136456577-136456657 73 3.76e-06 atagattaga tagataga chr22:49893880-49893960 73 3.76e-06 atacatatat tagataga chr1:32324811-32324891 56 3.76e-06 gaagatagat tagataga tgattgatag chr18:9857654-9857734 9 3.76e-06 tagataga tagataga tagatagata chr1:184738494-184738574 47 3.76e-06 gatagataga tagataga tgatagatag chr1:153575384-153575464 59 3.76e-06 agatagatga tagataga tagcagatag chr3:171094505-171094585 69 3.76e-06 gatagataga tagataga tgag chr1:32826434-32826514 14 3.76e-06 ctccatctca tagataga tagatagata chr8:130721806-130721886 49 3.76e-06 gatagataga tagataga tagatagata chr17:48891134-48891214 10 7.38e-06 gataatagg tagataat agatgatagg chr12:6904373-6904453 3 7.98e-06 tt tatctaat ctatttacct chr20:22412204-22412284 54 7.98e-06 tctatctatc tatctaat ctatctGCTT chr6:136652789-136652869 61 7.98e-06 ctgtctaatc tatctaat ctatcatcta chr8:67560684-67560764 72 7.98e-06 atcatctatg tatctaat c chr19:52431263-52431343 64 7.98e-06 tctatctatc tatctaat ttatctatc chr1:24153199-24153279 20 1.57e-05 gtacaaactt tatttaaa acaaagaact chr1:59389819-59389899 71 2.99e-05 tctacccacc tatctatc aa chr20:52530639-52530719 54 2.99e-05 ctatgtgtct tatctatc atctatctta chr1:31755382-31755462 25 2.99e-05 tcgcctaggc tatctatc tatctatcta chr3:171695719-171695799 42 2.99e-05 tctatctatc tatctatc tatctatcta chr10:29022342-29022422 49 2.99e-05 tctatctatc tatctatc tatctatcat chr2:172058396-172058476 48 2.99e-05 tctatctatc tatctatc tatcatcaat chr11:62528451-62528531 5 2.99e-05 tatc tatctatc tatctatcta chr7:150624380-150624460 33 3.70e-05 acaaagaaaa ttgataga tgatggatga chr12:117109978-11711005 14 3.70e-05 ggatagatga ttgataga tgatagataa chr5:96268625-96268705 10 4.89e-05 TTATCTCCT TTGATAAT GAATCGTAAC chr7:77464016-77464096 47 5.34e-05 agaacccaat tatcttga tgcttagtca chr11:59522885-59522965 41 6.17e-05 ACGCTCCTCC TAGCTAgc ggccgccgcc chr4:178230787-178230867 47 7.66e-05 CAGTTCAGCC TAGTTAGT TGTCCTCCAC chr1:142816366-142816446 61 1.14e-04 TCCATCACCT TTTCTTAA TGGATAATCA chr19:13049035-13049115 37 1.33e-04 GCTCCCGCGG TTTCTTTA AACGCCCAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAKMTARA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:82422458-82422538 1.6e-06 70_[+4]_2 chr7:29788242-29788322 3.8e-06 14_[+4]_58 chr1:249169074-249169154 3.8e-06 21_[+4]_51 chr17:65560062-65560142 3.8e-06 44_[+4]_28 chr2:113385365-113385445 3.8e-06 42_[+4]_30 chr2:136456577-136456657 3.8e-06 72_[+4] chr22:49893880-49893960 3.8e-06 72_[+4] chr1:32324811-32324891 3.8e-06 55_[+4]_17 chr18:9857654-9857734 3.8e-06 8_[+4]_64 chr1:184738494-184738574 3.8e-06 46_[+4]_26 chr1:153575384-153575464 3.8e-06 58_[+4]_14 chr3:171094505-171094585 3.8e-06 68_[+4]_4 chr1:32826434-32826514 3.8e-06 13_[+4]_59 chr8:130721806-130721886 3.8e-06 48_[+4]_24 chr17:48891134-48891214 7.4e-06 9_[+4]_63 chr12:6904373-6904453 8e-06 2_[+4]_70 chr20:22412204-22412284 8e-06 53_[+4]_19 chr6:136652789-136652869 8e-06 60_[+4]_12 chr8:67560684-67560764 8e-06 71_[+4]_1 chr19:52431263-52431343 8e-06 63_[+4]_9 chr1:24153199-24153279 1.6e-05 19_[+4]_53 chr1:59389819-59389899 3e-05 70_[+4]_2 chr20:52530639-52530719 3e-05 53_[+4]_19 chr1:31755382-31755462 3e-05 24_[+4]_48 chr3:171695719-171695799 3e-05 41_[+4]_31 chr10:29022342-29022422 3e-05 48_[+4]_24 chr2:172058396-172058476 3e-05 47_[+4]_25 chr11:62528451-62528531 3e-05 4_[+4]_68 chr7:150624380-150624460 3.7e-05 32_[+4]_40 chr12:117109978-11711005 3.7e-05 13_[+4]_59 chr5:96268625-96268705 4.9e-05 9_[+4]_63 chr7:77464016-77464096 5.3e-05 46_[+4]_26 chr11:59522885-59522965 6.2e-05 40_[+4]_32 chr4:178230787-178230867 7.7e-05 46_[+4]_26 chr1:142816366-142816446 0.00011 60_[+4]_12 chr19:13049035-13049115 0.00013 36_[+4]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAKMTARA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAKMTARA width=8 seqs=36 chr10:82422458-82422538 ( 71) TATCTAAA 1 chr7:29788242-29788322 ( 15) TAGATAGA 1 chr1:249169074-249169154 ( 22) TAGATAGA 1 chr17:65560062-65560142 ( 45) TAGATAGA 1 chr2:113385365-113385445 ( 43) TAGATAGA 1 chr2:136456577-136456657 ( 73) TAGATAGA 1 chr22:49893880-49893960 ( 73) TAGATAGA 1 chr1:32324811-32324891 ( 56) TAGATAGA 1 chr18:9857654-9857734 ( 9) TAGATAGA 1 chr1:184738494-184738574 ( 47) TAGATAGA 1 chr1:153575384-153575464 ( 59) TAGATAGA 1 chr3:171094505-171094585 ( 69) TAGATAGA 1 chr1:32826434-32826514 ( 14) TAGATAGA 1 chr8:130721806-130721886 ( 49) TAGATAGA 1 chr17:48891134-48891214 ( 10) TAGATAAT 1 chr12:6904373-6904453 ( 3) TATCTAAT 1 chr20:22412204-22412284 ( 54) TATCTAAT 1 chr6:136652789-136652869 ( 61) TATCTAAT 1 chr8:67560684-67560764 ( 72) TATCTAAT 1 chr19:52431263-52431343 ( 64) TATCTAAT 1 chr1:24153199-24153279 ( 20) TATTTAAA 1 chr1:59389819-59389899 ( 71) TATCTATC 1 chr20:52530639-52530719 ( 54) TATCTATC 1 chr1:31755382-31755462 ( 25) TATCTATC 1 chr3:171695719-171695799 ( 42) TATCTATC 1 chr10:29022342-29022422 ( 49) TATCTATC 1 chr2:172058396-172058476 ( 48) TATCTATC 1 chr11:62528451-62528531 ( 5) TATCTATC 1 chr7:150624380-150624460 ( 33) TTGATAGA 1 chr12:117109978-11711005 ( 14) TTGATAGA 1 chr5:96268625-96268705 ( 10) TTGATAAT 1 chr7:77464016-77464096 ( 47) TATCTTGA 1 chr11:59522885-59522965 ( 41) TAGCTAGC 1 chr4:178230787-178230867 ( 47) TAGTTAGT 1 chr1:142816366-142816446 ( 61) TTTCTTAA 1 chr19:13049035-13049115 ( 37) TTTCTTTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAKMTARA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.8321 E= 5.6e-024 -1181 -1181 -1181 277 262 -1181 -1181 -8 -1181 -1181 52 169 175 45 -1181 -140 -1181 -1181 -1181 277 271 -1181 -1181 -81 98 -1181 44 60 198 -64 -1181 60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAKMTARA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 5.6e-024 0.000000 0.000000 0.000000 1.000000 0.861111 0.000000 0.000000 0.138889 0.000000 0.000000 0.527778 0.472222 0.472222 0.472222 0.000000 0.055556 0.000000 0.000000 0.000000 1.000000 0.916667 0.000000 0.000000 0.083333 0.277778 0.000000 0.500000 0.222222 0.555556 0.222222 0.000000 0.222222 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAKMTARA MEME-4 regular expression -------------------------------------------------------------------------------- TA[GT][AC]TA[GAT][ACT] -------------------------------------------------------------------------------- Time 16.07 secs. ******************************************************************************** ******************************************************************************** MOTIF ATMKATVA MEME-5 width = 8 sites = 30 llr = 292 E-value = 5.7e-017 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATMKATVA MEME-5 Description -------------------------------------------------------------------------------- Simplified A a:5:a:27 pos.-specific C ::4:::4: probability G ::15::21 matrix T :a:4:a12 bits 2.8 * * 2.5 ** ** 2.3 ** ** 2.0 ** ** Relative 1.7 ** ** Entropy 1.4 ** ** * (14.1 bits) 1.1 ** ** * 0.8 ****** * 0.6 ****** * 0.3 ****** * 0.0 -------- Multilevel ATAGATCA consensus CT A sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATMKATVA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:65560062-65560142 27 1.00e-06 atagatatta atagataa gagagatgga chr2:136456577-136456657 41 1.00e-06 gatagataag atagataa gatagattga chr12:6904373-6904453 30 4.09e-06 taatctatca atctatca tctaatctat chr20:52530639-52530719 31 4.09e-06 tctatctatc atctatca atcatctatg chr10:29022342-29022422 58 4.09e-06 ctatctatct atctatca tctCATAAGT chr1:9836903-9836983 5 4.09e-06 tatc atctatca gcatttatct chr10:82422458-82422538 22 4.09e-06 ctatctatct atctatca tctatctatc chr6:136652789-136652869 42 4.09e-06 catctatcta atctatca tctgtctaat chr7:29788242-29788322 45 6.24e-06 gagatagaag atagatga tagagataga chr22:49893880-49893960 31 6.24e-06 gataaagaca atagatta gatagataat chr1:32324811-32324891 70 6.24e-06 tagatgattg atagatga tgg chr1:153575384-153575464 51 6.24e-06 agatagatag atagatga tagatagata chr12:117109978-11711005 33 6.24e-06 gatagataag atagatga ttgatagata chr1:32826434-32826514 57 6.24e-06 agatagatag atagatga tagatagata chr17:48891134-48891214 65 6.24e-06 tagacagatg atagatta gatagata chr8:130721806-130721886 10 6.24e-06 tggtagatg atagatga tagatagata chr1:59389819-59389899 1 1.93e-05 . atctatct tgtctatcta chr20:22412204-22412284 39 1.93e-05 ctatctatct atctatct atctatctat chr1:31755382-31755462 58 1.93e-05 ctatctatct atctatct atctatctat chr2:172058396-172058476 13 1.93e-05 ATCAGctatc atctatct atctatctat chr19:52431263-52431343 53 1.93e-05 ctatctatct atctatct atctatctaa chr8:67560684-67560764 58 2.46e-05 aatctatcca atgtatca tctatgtatc chr1:249169074-249169154 63 3.01e-05 agatagatag atagatag atagatagat chr18:9857654-9857734 59 3.01e-05 agatagatag atagatag atagataTAG chr1:184738494-184738574 57 3.01e-05 tagatagatg atagatag ctggagagat chr3:171094505-171094585 52 3.01e-05 agatagatag atagatag atagatagat chr7:150624380-150624460 2 8.22e-05 g atggatga ttgattgata chr3:9684614-9684694 50 8.22e-05 gtaccagctg atccatca agtgcagggt chr6:49703807-49703887 59 8.46e-05 CCGTATGTCC AAAGATTA GGTTTTAATT chr7:77464016-77464096 33 1.16e-04 cagaacttgg atctagaa cccaattatc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATMKATVA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:65560062-65560142 1e-06 26_[+5]_46 chr2:136456577-136456657 1e-06 40_[+5]_32 chr12:6904373-6904453 4.1e-06 29_[+5]_43 chr20:52530639-52530719 4.1e-06 30_[+5]_42 chr10:29022342-29022422 4.1e-06 57_[+5]_15 chr1:9836903-9836983 4.1e-06 4_[+5]_68 chr10:82422458-82422538 4.1e-06 21_[+5]_51 chr6:136652789-136652869 4.1e-06 41_[+5]_31 chr7:29788242-29788322 6.2e-06 44_[+5]_28 chr22:49893880-49893960 6.2e-06 30_[+5]_42 chr1:32324811-32324891 6.2e-06 69_[+5]_3 chr1:153575384-153575464 6.2e-06 50_[+5]_22 chr12:117109978-11711005 6.2e-06 32_[+5]_40 chr1:32826434-32826514 6.2e-06 56_[+5]_16 chr17:48891134-48891214 6.2e-06 64_[+5]_8 chr8:130721806-130721886 6.2e-06 9_[+5]_63 chr1:59389819-59389899 1.9e-05 [+5]_72 chr20:22412204-22412284 1.9e-05 38_[+5]_34 chr1:31755382-31755462 1.9e-05 57_[+5]_15 chr2:172058396-172058476 1.9e-05 12_[+5]_60 chr19:52431263-52431343 1.9e-05 52_[+5]_20 chr8:67560684-67560764 2.5e-05 57_[+5]_15 chr1:249169074-249169154 3e-05 62_[+5]_10 chr18:9857654-9857734 3e-05 58_[+5]_14 chr1:184738494-184738574 3e-05 56_[+5]_16 chr3:171094505-171094585 3e-05 51_[+5]_21 chr7:150624380-150624460 8.2e-05 1_[+5]_71 chr3:9684614-9684694 8.2e-05 49_[+5]_23 chr6:49703807-49703887 8.5e-05 58_[+5]_14 chr7:77464016-77464096 0.00012 32_[+5]_40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATMKATVA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATMKATVA width=8 seqs=30 chr17:65560062-65560142 ( 27) ATAGATAA 1 chr2:136456577-136456657 ( 41) ATAGATAA 1 chr12:6904373-6904453 ( 30) ATCTATCA 1 chr20:52530639-52530719 ( 31) ATCTATCA 1 chr10:29022342-29022422 ( 58) ATCTATCA 1 chr1:9836903-9836983 ( 5) ATCTATCA 1 chr10:82422458-82422538 ( 22) ATCTATCA 1 chr6:136652789-136652869 ( 42) ATCTATCA 1 chr7:29788242-29788322 ( 45) ATAGATGA 1 chr22:49893880-49893960 ( 31) ATAGATTA 1 chr1:32324811-32324891 ( 70) ATAGATGA 1 chr1:153575384-153575464 ( 51) ATAGATGA 1 chr12:117109978-11711005 ( 33) ATAGATGA 1 chr1:32826434-32826514 ( 57) ATAGATGA 1 chr17:48891134-48891214 ( 65) ATAGATTA 1 chr8:130721806-130721886 ( 10) ATAGATGA 1 chr1:59389819-59389899 ( 1) ATCTATCT 1 chr20:22412204-22412284 ( 39) ATCTATCT 1 chr1:31755382-31755462 ( 58) ATCTATCT 1 chr2:172058396-172058476 ( 13) ATCTATCT 1 chr19:52431263-52431343 ( 53) ATCTATCT 1 chr8:67560684-67560764 ( 58) ATGTATCA 1 chr1:249169074-249169154 ( 63) ATAGATAG 1 chr18:9857654-9857734 ( 59) ATAGATAG 1 chr1:184738494-184738574 ( 57) ATAGATAG 1 chr3:171094505-171094585 ( 52) ATAGATAG 1 chr7:150624380-150624460 ( 2) ATGGATGA 1 chr3:9684614-9684694 ( 50) ATCCATCA 1 chr6:49703807-49703887 ( 59) AAAGATTA 1 chr7:77464016-77464096 ( 33) ATCTAGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATMKATVA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.17126 E= 5.7e-017 283 -1155 -1155 -1155 -207 -1155 -1155 272 183 32 -246 -1155 -1155 -337 54 156 283 -1155 -1155 -1155 -1155 -1155 -346 272 73 32 -65 -55 232 -1155 -146 19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATMKATVA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 5.7e-017 1.000000 0.000000 0.000000 0.000000 0.033333 0.000000 0.000000 0.966667 0.500000 0.433333 0.066667 0.000000 0.000000 0.033333 0.533333 0.433333 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.033333 0.966667 0.233333 0.433333 0.233333 0.100000 0.700000 0.000000 0.133333 0.166667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATMKATVA MEME-5 regular expression -------------------------------------------------------------------------------- AT[AC][GT]AT[CAG]A -------------------------------------------------------------------------------- Time 19.57 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:35625482-35625562 9.99e-01 80 chr19:52431263-52431343 4.45e-12 1_[+1(5.30e-06)]_[+1(5.30e-06)]_\ [+1(5.30e-06)]_15_[+1(5.30e-06)]_[+1(5.30e-06)]_[+1(5.30e-06)]_7_\ [+3(3.37e-06)]_1 chr8:130721806-130721886 1.06e-13 9_[+5(6.24e-06)]_[+4(3.76e-06)]_5_\ [+2(5.19e-06)]_[+2(5.19e-06)]_[+2(5.19e-06)]_[+2(5.19e-06)]_[+2(5.19e-06)]_\ 1_[+1(6.13e-07)]_1 chr1:1136918-1136998 9.99e-01 80 chr9:140210717-140210797 2.91e-02 80 chr8:67560684-67560764 5.15e-11 15_[+2(4.63e-05)]_11_[+1(5.30e-06)]_\ 4_[+3(9.55e-06)]_3_[+5(2.46e-05)]_6_[+4(7.98e-06)]_1 chr11:62528451-62528531 8.19e-11 1_[+1(5.30e-06)]_[+1(5.30e-06)]_\ [+1(5.30e-06)]_[+1(5.30e-06)]_[+1(5.30e-06)]_39 chr6:136652789-136652869 2.82e-12 5_[+1(5.30e-06)]_5_[+5(4.09e-06)]_6_\ [+1(5.30e-06)]_1_[+5(4.09e-06)]_8_[+1(5.30e-06)]_1_[+5(4.09e-06)]_6 chr20:31331354-31331434 1.00e+00 80 chr19:1266982-1267062 9.98e-01 80 chr17:79917749-79917829 9.38e-01 80 chr20:62948172-62948252 8.49e-01 80 chr4:122618281-122618361 9.98e-01 80 chr2:65216290-65216370 1.00e+00 80 chr7:150945908-150945988 3.45e-01 80 chr13:114145150-11414523 9.98e-01 80 chr20:39765961-39766041 1.00e+00 80 chr1:208042493-208042573 9.62e-01 80 chr18:9708093-9708173 1.00e+00 80 chr4:129731039-129731119 1.00e+00 80 chr1:154974223-154974303 9.88e-01 80 chr1:27692962-27693042 9.99e-01 80 chr2:172058396-172058476 1.53e-12 12_[+1(5.30e-06)]_[+1(5.30e-06)]_\ [+1(5.30e-06)]_[+1(5.30e-06)]_[+1(5.30e-06)]_[+5(4.09e-06)]_6_\ [+3(2.47e-06)]_6 chr8:41347787-41347867 9.73e-01 80 chr1:15736409-15736489 9.74e-01 80 chr19:982825-982905 9.54e-01 80 chr4:1408943-1409023 6.15e-01 80 chr5:10761230-10761310 7.01e-01 80 chr10:82422458-82422538 6.68e-13 5_[+1(5.30e-06)]_[+1(5.30e-06)]_\ [+5(4.09e-06)]_3_[+5(4.09e-06)]_8_[+1(5.30e-06)]_14_[+4(1.62e-06)]_2 chr20:62526416-62526496 1.00e+00 80 chr6:2971398-2971478 1.00e+00 80 chr16:46865193-46865273 1.00e+00 80 chr19:14184254-14184334 2.83e-02 80 chr8:143808512-143808592 9.87e-01 80 chr19:56159748-56159828 9.40e-01 80 chr1:9836903-9836983 3.61e-12 4_[+5(4.09e-06)]_4_[+3(3.37e-06)]_2_\ [+1(5.30e-06)]_[+1(5.30e-06)]_[+1(5.30e-06)]_4_[+5(4.09e-06)]_18 chr19:1249118-1249198 9.93e-01 80 chr10:29022342-29022422 4.03e-13 5_[+5(4.09e-06)]_2_[+2(1.91e-06)]_\ [+3(3.37e-06)]_2_[+1(5.30e-06)]_[+1(5.30e-06)]_[+1(5.30e-06)]_\ [+5(4.09e-06)]_15 chr19:1513136-1513216 1.00e+00 80 chr9:139838782-139838862 1.00e+00 80 chr17:73892675-73892755 9.83e-01 80 chr2:242674206-242674286 9.72e-01 80 chr3:197476643-197476723 1.00e+00 80 chr6:107435558-107435638 9.99e-01 80 chr8:145561851-145561931 1.00e+00 80 chr7:142552614-142552694 1.00e+00 80 chr2:201374870-201374950 9.90e-01 80 chr17:43394100-43394180 1.00e+00 80 chr3:171695719-171695799 8.19e-11 26_[+1(5.30e-06)]_[+1(5.30e-06)]_\ [+1(5.30e-06)]_[+1(5.30e-06)]_[+1(5.30e-06)]_14 chr17:57409196-57409276 1.00e+00 80 chr7:151216315-151216395 6.79e-01 80 chr16:66785638-66785718 5.53e-01 80 chr5:74532795-74532875 9.76e-01 80 chr19:17666585-17666665 9.63e-01 80 chr1:1551273-1551353 1.00e+00 80 chr3:45635600-45635680 7.87e-01 80 chr17:48891134-48891214 1.64e-12 15_[+5(6.24e-06)]_4_[+3(7.98e-06)]_\ [+4(3.76e-06)]_19_[+3(7.98e-06)]_[+4(3.76e-06)]_2 chr17:6918124-6918204 7.68e-01 80 chr11:568826-568906 1.00e+00 80 chr1:225998016-225998096 6.57e-01 80 chr16:11349795-11349875 1.00e+00 80 chr1:32826434-32826514 1.42e-13 12_[+1(1.28e-05)]_[+1(1.28e-05)]_\ [+1(1.28e-05)]_[+1(1.28e-05)]_1_[+4(3.76e-06)]_[+4(3.76e-06)]_6_\ [+5(1.00e-06)]_5 chr8:144349380-144349460 9.87e-01 80 chr13:41363565-41363645 1.00e+00 80 chr17:36886353-36886433 9.75e-01 80 chr11:64880104-64880184 8.11e-02 56_[+2(8.27e-05)]_16 chr10:62703787-62703867 1.00e+00 80 chr7:155137626-155137706 9.97e-01 80 chr12:48099366-48099446 6.88e-01 80 chr12:117109978-11711005 1.12e-12 5_[+5(6.24e-06)]_1_[+3(7.98e-06)]_\ [+2(5.19e-06)]_[+3(4.90e-06)]_4_[+2(5.19e-06)]_[+3(4.90e-06)]_5_\ [+1(4.53e-05)]_1_[+1(4.09e-05)] chr11:64126554-64126634 1.00e+00 80 chr3:152880064-152880144 7.73e-01 80 chr1:31755382-31755462 8.19e-11 25_[+1(5.30e-06)]_[+1(5.30e-06)]_\ [+1(5.30e-06)]_[+1(5.30e-06)]_[+1(5.30e-06)]_[+1(5.30e-06)]_7 chr9:131182576-131182656 6.22e-01 80 chr6:52226957-52227037 9.99e-01 80 chr3:9684614-9684694 2.70e-08 26_[+1(9.41e-06)]_15_[+5(8.22e-05)]_\ 23 chr9:100747147-100747227 8.78e-01 80 chr12:132970768-13297084 7.77e-01 80 chr7:150624380-150624460 6.56e-14 1_[+5(8.22e-05)]_6_[+2(5.19e-06)]_\ 12_[+5(6.24e-06)]_10_[+1(6.13e-07)]_1_[+3(4.90e-06)]_[+3(4.90e-06)]_2 chr20:52530639-52530719 3.61e-12 3_[+1(5.30e-06)]_[+1(5.30e-06)]_\ [+1(5.30e-06)]_3_[+5(4.09e-06)]_3_[+5(3.01e-05)]_3_[+3(3.37e-06)]_8_\ [+3(3.37e-06)]_4 chr19:17346583-17346663 2.20e-01 80 chr3:133646469-133646549 9.99e-01 80 chr2:101034030-101034110 7.37e-01 80 chr1:36621883-36621963 9.89e-01 80 chr16:88869946-88870026 9.04e-01 80 chr4:110354814-110354894 9.90e-01 80 chr16:30406776-30406856 9.99e-01 80 chr17:42061422-42061502 3.85e-01 80 chr7:105517193-105517273 9.98e-01 80 chr3:171094505-171094585 2.87e-13 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chr3:196696716-196696796 9.99e-01 80 chr17:79451471-79451551 1.00e+00 80 chr12:6904373-6904453 1.11e-12 2_[+4(7.98e-06)]_11_[+5(4.09e-06)]_\ [+5(4.09e-06)]_4_[+1(5.30e-06)]_6_[+2(8.42e-06)]_[+1(2.33e-05)]_1_\ [+1(5.30e-06)] chr4:17513746-17513826 9.17e-01 80 chr9:139010383-139010463 9.95e-01 80 chr17:77785318-77785398 1.66e-02 62_[+2(9.87e-05)]_10 chr2:55276261-55276341 6.17e-01 80 chr1:54872269-54872349 3.32e-01 80 chr12:122906905-12290698 1.00e+00 80 chr5:175843528-175843608 1.00e+00 80 chr7:138916401-138916481 1.00e+00 80 chr7:6629595-6629675 1.00e+00 80 chr4:2757905-2757985 9.98e-01 80 chr2:46769621-46769701 1.00e+00 80 chr2:172963900-172963980 9.16e-01 80 chr1:26202084-26202164 5.67e-01 80 chr2:30370805-30370885 9.60e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n04.farnam.hpc.yale.internal ********************************************************************************