******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/GATAD2A.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr16:14013668-14013748 1.0000 80 chr16:56228400-56228480 1.0000 80 chr2:208394557-208394637 1.0000 80 chr2:133025758-133025838 1.0000 80 chr19:7099084-7099164 1.0000 80 chr1:1136942-1137022 1.0000 80 chr22:51021151-51021231 1.0000 80 chr3:138476401-138476481 1.0000 80 chr16:28936437-28936517 1.0000 80 chr1:154974210-154974290 1.0000 80 chr9:132259062-132259142 1.0000 80 chr4:1408942-1409022 1.0000 80 chr10:72337069-72337149 1.0000 80 chr1:54412097-54412177 1.0000 80 chr9:131314567-131314647 1.0000 80 chr16:1660772-1660852 1.0000 80 chr19:40951994-40952074 1.0000 80 chr19:39467236-39467316 1.0000 80 chr22:37595578-37595658 1.0000 80 chr15:41222845-41222925 1.0000 80 chr8:30670343-30670423 1.0000 80 chr10:75757362-75757442 1.0000 80 chr8:28558994-28559074 1.0000 80 chr1:246345586-246345666 1.0000 80 chr12:54763979-54764059 1.0000 80 chr1:7765211-7765291 1.0000 80 chr19:18169478-18169558 1.0000 80 chr21:38446100-38446180 1.0000 80 chr3:197161012-197161092 1.0000 80 chr17:40828047-40828127 1.0000 80 chr6:20213864-20213944 1.0000 80 chr19:56165962-56166042 1.0000 80 chr7:158768331-158768411 1.0000 80 chr7:123173006-123173086 1.0000 80 chr7:75496595-75496675 1.0000 80 chr1:203274696-203274776 1.0000 80 chr19:18263458-18263538 1.0000 80 chr1:2159223-2159303 1.0000 80 chr18:9707841-9707921 1.0000 80 chr8:67560707-67560787 1.0000 80 chr6:135628082-135628162 1.0000 80 chr1:226150068-226150148 1.0000 80 chr17:46688367-46688447 1.0000 80 chr1:211751278-211751358 1.0000 80 chr2:65586710-65586790 1.0000 80 chr1:31574123-31574203 1.0000 80 chr9:139481756-139481836 1.0000 80 chr1:228674430-228674510 1.0000 80 chr1:54872331-54872411 1.0000 80 chr7:50423591-50423671 1.0000 80 chr17:48891117-48891197 1.0000 80 chr19:2494617-2494697 1.0000 80 chr6:44102288-44102368 1.0000 80 chr15:69755163-69755243 1.0000 80 chr6:105404062-105404142 1.0000 80 chr5:1105827-1105907 1.0000 80 chr6:44042371-44042451 1.0000 80 chr9:131182571-131182651 1.0000 80 chr7:105516932-105517012 1.0000 80 chr19:48928215-48928295 1.0000 80 chr15:90605445-90605525 1.0000 80 chr6:26924717-26924797 1.0000 80 chr5:154215084-154215164 1.0000 80 chr1:43284770-43284850 1.0000 80 chrX:119384588-119384668 1.0000 80 chr1:167895913-167895993 1.0000 80 chr1:24828633-24828713 1.0000 80 chr6:27619302-27619382 1.0000 80 chr14:77843474-77843554 1.0000 80 chr2:61922205-61922285 1.0000 80 chr22:39679653-39679733 1.0000 80 chr17:74693973-74694053 1.0000 80 chr19:49588277-49588357 1.0000 80 chr22:23285002-23285082 1.0000 80 chr12:110906483-11090656 1.0000 80 chr19:51871218-51871298 1.0000 80 chr16:53089687-53089767 1.0000 80 chr3:194898906-194898986 1.0000 80 chr9:4852588-4852668 1.0000 80 chr6:125283050-125283130 1.0000 80 chr17:8067735-8067815 1.0000 80 chr5:121485558-121485638 1.0000 80 chr1:19734342-19734422 1.0000 80 chr14:23564243-23564323 1.0000 80 chr5:67621242-67621322 1.0000 80 chr6:16238624-16238704 1.0000 80 chr19:45348873-45348953 1.0000 80 chr5:175875206-175875286 1.0000 80 chr9:123964364-123964444 1.0000 80 chrX:39977202-39977282 1.0000 80 chr6:16005304-16005384 1.0000 80 chr2:159362108-159362188 1.0000 80 chr3:136559307-136559387 1.0000 80 chr8:128747856-128747936 1.0000 80 chr6:163834590-163834670 1.0000 80 chr19:12893313-12893393 1.0000 80 chr1:21503266-21503346 1.0000 80 chr8:38240640-38240720 1.0000 80 chr8:129060803-129060883 1.0000 80 chr5:95043419-95043499 1.0000 80 chr19:2841113-2841193 1.0000 80 chr11:62313144-62313224 1.0000 80 chr6:2989339-2989419 1.0000 80 chr9:135998648-135998728 1.0000 80 chr22:19706489-19706569 1.0000 80 chr1:33220095-33220175 1.0000 80 chr19:47616465-47616545 1.0000 80 chr11:65083114-65083194 1.0000 80 chr16:3156426-3156506 1.0000 80 chr7:149457807-149457887 1.0000 80 chr22:19974519-19974599 1.0000 80 chr1:173272518-173272598 1.0000 80 chr9:100174167-100174247 1.0000 80 chr12:111834970-11183505 1.0000 80 chr3:154994016-154994096 1.0000 80 chr19:49496876-49496956 1.0000 80 chr2:220436840-220436920 1.0000 80 chr9:134249135-134249215 1.0000 80 chr3:45252272-45252352 1.0000 80 chr9:101077920-101078000 1.0000 80 chr22:20267285-20267365 1.0000 80 chr20:60932457-60932537 1.0000 80 chr19:38761437-38761517 1.0000 80 chr17:74016073-74016153 1.0000 80 chr2:242674208-242674288 1.0000 80 chr15:93461205-93461285 1.0000 80 chr10:75911270-75911350 1.0000 80 chr7:116057885-116057965 1.0000 80 chr19:41255554-41255634 1.0000 80 chr8:33330614-33330694 1.0000 80 chr19:4081860-4081940 1.0000 80 chr19:3572711-3572791 1.0000 80 chr16:88522257-88522337 1.0000 80 chr1:167838840-167838920 1.0000 80 chr13:114897203-11489728 1.0000 80 chr15:91380629-91380709 1.0000 80 chr6:36648317-36648397 1.0000 80 chr16:1347058-1347138 1.0000 80 chr10:93368869-93368949 1.0000 80 chr6:37175880-37175960 1.0000 80 chr19:49395476-49395556 1.0000 80 chr12:112213710-11221379 1.0000 80 chr18:9848292-9848372 1.0000 80 chr17:56441744-56441824 1.0000 80 chr7:2354483-2354563 1.0000 80 chr6:52859869-52859949 1.0000 80 chr13:49684359-49684439 1.0000 80 chr15:68174881-68174961 1.0000 80 chr6:3068580-3068660 1.0000 80 chr22:19701576-19701656 1.0000 80 chr7:945279-945359 1.0000 80 chr19:13049050-13049130 1.0000 80 chr4:123697265-123697345 1.0000 80 chr6:3229216-3229296 1.0000 80 chr9:130624988-130625068 1.0000 80 chr1:161923248-161923328 1.0000 80 chr5:88425200-88425280 1.0000 80 chr3:182433958-182434038 1.0000 80 chr1:243419602-243419682 1.0000 80 chr8:125647793-125647873 1.0000 80 chr10:80808114-80808194 1.0000 80 chr1:202133699-202133779 1.0000 80 chr19:39903367-39903447 1.0000 80 chr7:101458626-101458706 1.0000 80 chr7:101457675-101457755 1.0000 80 chr9:128235682-128235762 1.0000 80 chr22:20046608-20046688 1.0000 80 chr15:41408520-41408600 1.0000 80 chr1:182284023-182284103 1.0000 80 chr7:100075934-100076014 1.0000 80 chr17:45266567-45266647 1.0000 80 chr16:50288192-50288272 1.0000 80 chr10:50374168-50374248 1.0000 80 chr1:206612706-206612786 1.0000 80 chr7:116593026-116593106 1.0000 80 chr4:160025604-160025684 1.0000 80 chr6:11921307-11921387 1.0000 80 chr19:2945317-2945397 1.0000 80 chr17:71007348-71007428 1.0000 80 chr1:142816338-142816418 1.0000 80 chr6:144164090-144164170 1.0000 80 chr16:88851982-88852062 1.0000 80 chr4:1581421-1581501 1.0000 80 chr11:695692-695772 1.0000 80 chr2:80397343-80397423 1.0000 80 chr22:19165842-19165922 1.0000 80 chr8:54680921-54681001 1.0000 80 chr5:179247620-179247700 1.0000 80 chr8:131012275-131012355 1.0000 80 chr14:23624619-23624699 1.0000 80 chr11:65153899-65153979 1.0000 80 chr20:32297882-32297962 1.0000 80 chr6:32158074-32158154 1.0000 80 chr2:55276236-55276316 1.0000 80 chr16:88521523-88521603 1.0000 80 chr1:206845504-206845584 1.0000 80 chr22:19802739-19802819 1.0000 80 chr8:22516243-22516323 1.0000 80 chr8:17925175-17925255 1.0000 80 chr6:43811076-43811156 1.0000 80 chr19:1203630-1203710 1.0000 80 chr15:28539849-28539929 1.0000 80 chr17:6918105-6918185 1.0000 80 chr3:4781477-4781557 1.0000 80 chr2:120517576-120517656 1.0000 80 chr3:46977035-46977115 1.0000 80 chr12:102249412-10224949 1.0000 80 chr16:84681821-84681901 1.0000 80 chr1:26201729-26201809 1.0000 80 chr5:132126300-132126380 1.0000 80 chr11:67080190-67080270 1.0000 80 chr1:153539118-153539198 1.0000 80 chr11:67250534-67250614 1.0000 80 chr17:55063233-55063313 1.0000 80 chr19:59070069-59070149 1.0000 80 chr4:145058863-145058943 1.0000 80 chr19:49654024-49654104 1.0000 80 chr1:54841577-54841657 1.0000 80 chr11:5186217-5186297 1.0000 80 chr17:40828679-40828759 1.0000 80 chr6:143381599-143381679 1.0000 80 chr12:1714388-1714468 1.0000 80 chr7:76009541-76009621 1.0000 80 chr5:149267528-149267608 1.0000 80 chr1:27853993-27854073 1.0000 80 chr2:201374943-201375023 1.0000 80 chr22:19702371-19702451 1.0000 80 chr1:36621347-36621427 1.0000 80 chr10:74051009-74051089 1.0000 80 chr1:43432901-43432981 1.0000 80 chr6:42939012-42939092 1.0000 80 chr4:83822069-83822149 1.0000 80 chr7:142654358-142654438 1.0000 80 chr1:12570572-12570652 1.0000 80 chr10:79669655-79669735 1.0000 80 chr9:116647014-116647094 1.0000 80 chr1:156833068-156833148 1.0000 80 chr19:13094594-13094674 1.0000 80 chr19:56904552-56904632 1.0000 80 chr8:66655622-66655702 1.0000 80 chr19:10534934-10535014 1.0000 80 chr19:10410704-10410784 1.0000 80 chr9:99445936-99446016 1.0000 80 chr11:10921145-10921225 1.0000 80 chr1:27754973-27755053 1.0000 80 chr7:105753104-105753184 1.0000 80 chr1:90372319-90372399 1.0000 80 chr6:138187427-138187507 1.0000 80 chr22:22378226-22378306 1.0000 80 chr6:43806514-43806594 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_GATAD2A/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/GATAD2A.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.204 C 0.29 G 0.305 T 0.201 Background letter frequencies (from file dataset with add-one prior applied): A 0.204 C 0.29 G 0.305 T 0.201 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGTGTGTG MEME-1 width = 8 sites = 30 llr = 265 E-value = 1.5e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::2::::: pos.-specific C 12:1:::: probability G :8:9:a19 matrix T 9:8:a:91 bits 2.3 * 2.1 * 1.9 * * 1.6 * * *** Relative 1.4 * * **** Entropy 1.2 ******** (12.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGTGTGTG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:12570572-12570652 28 1.41e-05 tgtgtgtgtg tgtgtgtg CGCGCGCGCG chr5:149267528-149267608 6 1.41e-05 ttctg tgtgtgtg tgtgtgtgtg chr12:1714388-1714468 14 1.41e-05 ggagggtgtg tgtgtgtg agagtgagtg chr16:88521523-88521603 35 1.41e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtg chr2:80397343-80397423 21 1.41e-05 tctctgtgtg tgtgtgtg tgtttgtgtg chr7:100075934-100076014 41 1.41e-05 agagagagag tgtgtgtg tgtgtgtgtg chr6:3229216-3229296 27 1.41e-05 CGCGCGTGTG TGTGTGTG TGTGTgagag chr3:45252272-45252352 32 1.41e-05 TGTGCACGCG TGTGTGTG TTTAGGTGGA chr5:121485558-121485638 39 1.41e-05 tgtgtgtgtg tgtgtgtg tgtgcgcgcg chr6:125283050-125283130 2 1.41e-05 g tgtgtgtg tgcgcgggtg chr6:27619302-27619382 37 1.41e-05 ACTGAAGGGg tgtgtgtg tgtgtgtgtg chr1:43284770-43284850 73 1.41e-05 GTTAGGAGCg tgtgtgtg chr7:75496595-75496675 17 1.41e-05 tctctctGTG TGTGTGTG TATGTTagac chr6:37175880-37175960 14 2.85e-05 atttctaccc tgagtgtg gtggggagcc chr1:7765211-7765291 60 2.85e-05 GAGTGGGGAG TGAGTGTG AGGAGCAAGG chr3:182433958-182434038 55 4.19e-05 cccagctcct tctgtgtg ggagctgtct chr18:9848292-9848372 4 4.19e-05 cca tctgtgtg tatatccatc chr6:16005304-16005384 7 4.19e-05 GCAGAC TCTGTGTG GGGAAGTGTG chr10:80808114-80808194 1 6.46e-05 . TGTGTGTT GGTGACAGGA chr21:38446100-38446180 36 6.46e-05 TTACTGCCCC TGTCTGTG GGCTGCGCGT chr4:83822069-83822149 68 8.50e-05 ggtcgcgccg cgtgtgtg acgcg chr22:20046608-20046688 62 8.50e-05 ggtctgataa cgtgtgtg atctctactg chr4:1408942-1409022 69 8.50e-05 TGTCCGTGTC CGTGTGTG ACCG chr6:42939012-42939092 44 9.45e-05 TGAGTCATGG TGTGTATG ACTCACCATG chr2:61922205-61922285 35 1.30e-04 GGGTCTGCGC TGTGTGGG TAGGGGGTCT chr3:4781477-4781557 52 1.53e-04 gtcactcata tgactgtg gccattggtg chr1:206845504-206845584 11 1.53e-04 ATCTAAAGGA TGACTGTG TCACCATTGT chr1:173272518-173272598 44 1.95e-04 agctgtctta tctgtgtt ttcctgtctg chr22:20267285-20267365 42 2.63e-04 ATAAAAAGTA TGAGTGGG GAACAGGATT chr16:53089687-53089767 72 4.53e-04 CAGAAAGACA CCAGTGTG G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:12570572-12570652 1.4e-05 27_[+1]_45 chr5:149267528-149267608 1.4e-05 5_[+1]_67 chr12:1714388-1714468 1.4e-05 13_[+1]_59 chr16:88521523-88521603 1.4e-05 34_[+1]_38 chr2:80397343-80397423 1.4e-05 20_[+1]_52 chr7:100075934-100076014 1.4e-05 40_[+1]_32 chr6:3229216-3229296 1.4e-05 26_[+1]_46 chr3:45252272-45252352 1.4e-05 31_[+1]_41 chr5:121485558-121485638 1.4e-05 38_[+1]_34 chr6:125283050-125283130 1.4e-05 1_[+1]_71 chr6:27619302-27619382 1.4e-05 36_[+1]_36 chr1:43284770-43284850 1.4e-05 72_[+1] chr7:75496595-75496675 1.4e-05 16_[+1]_56 chr6:37175880-37175960 2.8e-05 13_[+1]_59 chr1:7765211-7765291 2.8e-05 59_[+1]_13 chr3:182433958-182434038 4.2e-05 54_[+1]_18 chr18:9848292-9848372 4.2e-05 3_[+1]_69 chr6:16005304-16005384 4.2e-05 6_[+1]_66 chr10:80808114-80808194 6.5e-05 [+1]_72 chr21:38446100-38446180 6.5e-05 35_[+1]_37 chr4:83822069-83822149 8.5e-05 67_[+1]_5 chr22:20046608-20046688 8.5e-05 61_[+1]_11 chr4:1408942-1409022 8.5e-05 68_[+1]_4 chr6:42939012-42939092 9.4e-05 43_[+1]_29 chr2:61922205-61922285 0.00013 34_[+1]_38 chr3:4781477-4781557 0.00015 51_[+1]_21 chr1:206845504-206845584 0.00015 10_[+1]_62 chr1:173272518-173272598 0.00019 43_[+1]_29 chr22:20267285-20267365 0.00026 41_[+1]_31 chr16:53089687-53089767 0.00045 71_[+1]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTGTGTG width=8 seqs=30 chr1:12570572-12570652 ( 28) TGTGTGTG 1 chr5:149267528-149267608 ( 6) TGTGTGTG 1 chr12:1714388-1714468 ( 14) TGTGTGTG 1 chr16:88521523-88521603 ( 35) TGTGTGTG 1 chr2:80397343-80397423 ( 21) TGTGTGTG 1 chr7:100075934-100076014 ( 41) TGTGTGTG 1 chr6:3229216-3229296 ( 27) TGTGTGTG 1 chr3:45252272-45252352 ( 32) TGTGTGTG 1 chr5:121485558-121485638 ( 39) TGTGTGTG 1 chr6:125283050-125283130 ( 2) TGTGTGTG 1 chr6:27619302-27619382 ( 37) TGTGTGTG 1 chr1:43284770-43284850 ( 73) TGTGTGTG 1 chr7:75496595-75496675 ( 17) TGTGTGTG 1 chr6:37175880-37175960 ( 14) TGAGTGTG 1 chr1:7765211-7765291 ( 60) TGAGTGTG 1 chr3:182433958-182434038 ( 55) TCTGTGTG 1 chr18:9848292-9848372 ( 4) TCTGTGTG 1 chr6:16005304-16005384 ( 7) TCTGTGTG 1 chr10:80808114-80808194 ( 1) TGTGTGTT 1 chr21:38446100-38446180 ( 36) TGTCTGTG 1 chr4:83822069-83822149 ( 68) CGTGTGTG 1 chr22:20046608-20046688 ( 62) CGTGTGTG 1 chr4:1408942-1409022 ( 69) CGTGTGTG 1 chr6:42939012-42939092 ( 44) TGTGTATG 1 chr2:61922205-61922285 ( 35) TGTGTGGG 1 chr3:4781477-4781557 ( 52) TGACTGTG 1 chr1:206845504-206845584 ( 11) TGACTGTG 1 chr1:173272518-173272598 ( 44) TCTGTGTT 1 chr22:20267285-20267365 ( 42) TGAGTGGG 1 chr16:53089687-53089767 ( 72) CCAGTGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.92146 E= 1.5e-005 -1155 -112 -1155 211 -1155 -80 145 -1155 -3 -1155 -1155 199 -1155 -153 156 -1155 -1155 -1155 -1155 231 -261 -1155 166 -1155 -1155 -1155 -219 221 -1155 -1155 161 -159 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 1.5e-005 0.000000 0.133333 0.000000 0.866667 0.000000 0.166667 0.833333 0.000000 0.200000 0.000000 0.000000 0.800000 0.000000 0.100000 0.900000 0.000000 0.000000 0.000000 0.000000 1.000000 0.033333 0.000000 0.966667 0.000000 0.000000 0.000000 0.066667 0.933333 0.000000 0.000000 0.933333 0.066667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-1 regular expression -------------------------------------------------------------------------------- TG[TA]GTGTG -------------------------------------------------------------------------------- Time 5.03 secs. ******************************************************************************** ******************************************************************************** MOTIF CYCTYCCT MEME-2 width = 8 sites = 62 llr = 459 E-value = 1.4e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CYCTYCCT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 757:78a3 probability G :::::::: matrix T 353a31:7 bits 2.3 * 2.1 * 1.9 * * 1.6 * * Relative 1.4 * * Entropy 1.2 ******** (10.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCCTCCCT consensus TTT T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCTYCCT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr4:145058863-145058943 34 1.67e-05 ctccctccct ctctccct cctctcttct chr2:55276236-55276316 27 1.67e-05 ACTGGAGGCG CTCTCCCT TCACTGCGGT chr1:161923248-161923328 9 1.67e-05 TAGACAAG CTCTCCCT ATCTGAATCC chr3:136559307-136559387 59 1.67e-05 cttcctctct ctctccct ccctccctct chr6:26924717-26924797 28 1.67e-05 cggcccgcgc ctctccct ccacacctcc chr1:156833068-156833148 36 2.82e-05 tctctctgac ctcttcct gtcagtttct chr17:55063233-55063313 44 2.82e-05 TTCTTATCGT CTCTTCCT TCCCTCACCC chr19:4081860-4081940 51 2.82e-05 ctcctccctg ctcttcct tcctccctcc chr1:246345586-246345666 62 2.82e-05 TCTCTATCAC CTCTTCCT CCCTGATAGT chr10:72337069-72337149 42 2.82e-05 ttcattcttt ctcttcct tttttctttt chr6:138187427-138187507 19 5.22e-05 ACATGACTCA CCCTCCCT GTGCAACGCA chr19:10534934-10535014 33 5.22e-05 CCTGCGTCCC CCCTCCCT GGGCCCTAAA chrX:39977202-39977282 56 5.22e-05 CCCTTTTCCT CCCTCCCT ATCTGTCTTC chr8:30670343-30670423 4 5.22e-05 CTC CCCTCCCT CCGGGTTTCC chr5:88425200-88425280 59 6.38e-05 TCTTACCTCT TTCTCCCT GTCCTTATCC chr8:33330614-33330694 14 6.38e-05 GCAGCTTCCT TTCTCCCT ATGAGCCCAA chr1:27754973-27755053 27 9.20e-05 TTTGCTGCAG CCCTTCCT GCCACCCTTC chr11:62313144-62313224 45 9.20e-05 CACACACAGC CCCTTCCT CCTCCCCTTT chr1:54412097-54412177 15 9.20e-05 CTGTGTCCCA CCCTTCCT AGCTTTGTGC chr19:10410704-10410784 73 1.25e-04 CCTCTGCCCC TCCTCCCT chr9:130624988-130625068 57 1.25e-04 TCCTCCACAC TCCTCCCT GAGCTCCTGC chr13:49684359-49684439 57 1.25e-04 GTCAAAGGAT CTTTTCCT CTTACAGCCT chr15:90605445-90605525 31 1.25e-04 ctctGATATG TCCTCCCT TCCCCCACTC chr3:197161012-197161092 26 1.25e-04 ATAACTAGTC TCCTCCCT CCACATAACT chr9:99445936-99446016 2 1.41e-04 g ccttccct aactccgtta chr5:149267528-149267608 41 1.41e-04 ttaaccctcg ccttccct tcaaaaccta chr5:132126300-132126380 38 1.41e-04 CCTTATCTCT CCTTCCCT TTCCTGTCCT chr1:154974210-154974290 40 1.41e-04 CCTGGGGCGC CCTTCCCT CCCCGCGGGG chr9:116647014-116647094 14 1.61e-04 AGCCAGTTTT TCCTTCCT TATCGAGACA chr10:79669655-79669735 10 1.61e-04 AAAAGGCTT TTTTCCCT GGGACAAGAG chr1:26201729-26201809 15 1.61e-04 AGCGAGCTCC TCCTTCCT GCGCCCTCCG chr7:105516932-105517012 9 1.61e-04 TTGTTGCT TTTTCCCT GTTCCTTCGG chr17:46688367-46688447 20 1.78e-04 AAGGACCCCC TTTTTCCT CTCCGGACCA chr2:80397343-80397423 2 2.50e-04 t ctctctct ctctctgtgt chr10:93368869-93368949 37 2.50e-04 CTGTACATTt ctctctct ctctctctct chr19:48928215-48928295 70 2.50e-04 tctcttctct ctctctct ctc chr7:75496595-75496675 6 2.50e-04 tctct ctctctct GTGTGTGTGT chr1:153539118-153539198 20 2.84e-04 TAGCTTCTTC CCCTCCCC CAGCCCCTCT chr1:206845504-206845584 45 2.84e-04 GATAATGGCT CCCTCCCC CGCTTCCCTC chr19:12893313-12893393 16 2.84e-04 CCGGGAGGCG CCCTCCCC GCGTTGCGGG chr12:110906483-11090656 38 2.84e-04 GCGCTCCTGC CCCTCCCC CACCGTAACT chr6:105404062-105404142 49 2.84e-04 CCTGGCGATC CCCTCCCC CTCCTGCCCT chr10:50374168-50374248 21 3.09e-04 TGAGGCTCTA TTCTCCCC AGAAGCACCC chr1:182284023-182284103 43 3.09e-04 CCTTATCTCC TTCTCCCC TCACCCACTC chr1:173272518-173272598 62 3.09e-04 ttcctgtctg ctctttct ggctgctctt chr20:32297882-32297962 13 3.66e-04 tgaaccacac cccttccc cgactcccac chr8:128747856-128747936 22 3.66e-04 AAGCGCGGCC CTTTCCCC AGCCTTAGCG chr19:18263458-18263538 38 3.66e-04 GCGGCAGGCC CTTTCCCC ACTCTACTGC chr6:135628082-135628162 67 3.86e-04 TAGGGAATAG TTCTTCCC AAACCA chr8:129060803-129060883 15 4.41e-04 TATGAGCCGA TCCTCCCC AGAAGCTGGG chr6:44102288-44102368 40 4.41e-04 AGCCATGCTG CCCTTTCT GCTGGCCACA chr1:31574123-31574203 32 4.41e-04 gagaggaggC CTTTTCCC CTGACCTGGG chr1:202133699-202133779 14 4.71e-04 TCCCTGGCCA CCTTCCCC ATAGTATAGG chr8:17925175-17925255 50 5.16e-04 TCTTACCATT TCCTTCCC ACACTCACAG chr3:182433958-182434038 40 5.16e-04 acccaggaga ttttcccc agctccttct chr7:50423591-50423671 31 5.16e-04 TAGATAAGGA CTTTTTCT CAGCAACTTC chr18:9707841-9707921 10 5.16e-04 GTGGCCTGA CTTTTTCT GCGTGGGACC chr4:160025604-160025684 14 5.44e-04 CCATGACTGA CCTTTCCC ACTATGTTGC chr19:13094594-13094674 16 5.90e-04 GAAGGGGCGG TCTTCCCC ACTTCAAGGG chr1:203274696-203274776 11 6.59e-04 CACCCGAGAC CTCTCACT GAGCCCGAGC chr7:105753104-105753184 60 7.48e-04 CTCAGAGACA CCCTCACT TGACCCCGAG chr6:163834590-163834670 23 8.09e-04 AGTGCAAGGC TCCTCTCC GCCGTGCTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCTYCCT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:145058863-145058943 1.7e-05 33_[+2]_39 chr2:55276236-55276316 1.7e-05 26_[+2]_46 chr1:161923248-161923328 1.7e-05 8_[+2]_64 chr3:136559307-136559387 1.7e-05 58_[+2]_14 chr6:26924717-26924797 1.7e-05 27_[+2]_45 chr1:156833068-156833148 2.8e-05 35_[+2]_37 chr17:55063233-55063313 2.8e-05 43_[+2]_29 chr19:4081860-4081940 2.8e-05 50_[+2]_22 chr1:246345586-246345666 2.8e-05 61_[+2]_11 chr10:72337069-72337149 2.8e-05 41_[+2]_31 chr6:138187427-138187507 5.2e-05 18_[+2]_54 chr19:10534934-10535014 5.2e-05 32_[+2]_40 chrX:39977202-39977282 5.2e-05 55_[+2]_17 chr8:30670343-30670423 5.2e-05 3_[+2]_69 chr5:88425200-88425280 6.4e-05 58_[+2]_14 chr8:33330614-33330694 6.4e-05 13_[+2]_59 chr1:27754973-27755053 9.2e-05 26_[+2]_46 chr11:62313144-62313224 9.2e-05 44_[+2]_28 chr1:54412097-54412177 9.2e-05 14_[+2]_58 chr19:10410704-10410784 0.00012 72_[+2] chr9:130624988-130625068 0.00012 56_[+2]_16 chr13:49684359-49684439 0.00012 56_[+2]_16 chr15:90605445-90605525 0.00012 30_[+2]_42 chr3:197161012-197161092 0.00012 25_[+2]_47 chr9:99445936-99446016 0.00014 1_[+2]_71 chr5:149267528-149267608 0.00014 40_[+2]_32 chr5:132126300-132126380 0.00014 37_[+2]_35 chr1:154974210-154974290 0.00014 39_[+2]_33 chr9:116647014-116647094 0.00016 13_[+2]_59 chr10:79669655-79669735 0.00016 9_[+2]_63 chr1:26201729-26201809 0.00016 14_[+2]_58 chr7:105516932-105517012 0.00016 8_[+2]_64 chr17:46688367-46688447 0.00018 19_[+2]_53 chr2:80397343-80397423 0.00025 1_[+2]_71 chr10:93368869-93368949 0.00025 36_[+2]_36 chr19:48928215-48928295 0.00025 69_[+2]_3 chr7:75496595-75496675 0.00025 5_[+2]_67 chr1:153539118-153539198 0.00028 19_[+2]_53 chr1:206845504-206845584 0.00028 44_[+2]_28 chr19:12893313-12893393 0.00028 15_[+2]_57 chr12:110906483-11090656 0.00028 37_[+2]_35 chr6:105404062-105404142 0.00028 48_[+2]_24 chr10:50374168-50374248 0.00031 20_[+2]_52 chr1:182284023-182284103 0.00031 42_[+2]_30 chr1:173272518-173272598 0.00031 61_[+2]_11 chr20:32297882-32297962 0.00037 12_[+2]_60 chr8:128747856-128747936 0.00037 21_[+2]_51 chr19:18263458-18263538 0.00037 37_[+2]_35 chr6:135628082-135628162 0.00039 66_[+2]_6 chr8:129060803-129060883 0.00044 14_[+2]_58 chr6:44102288-44102368 0.00044 39_[+2]_33 chr1:31574123-31574203 0.00044 31_[+2]_41 chr1:202133699-202133779 0.00047 13_[+2]_59 chr8:17925175-17925255 0.00052 49_[+2]_23 chr3:182433958-182434038 0.00052 39_[+2]_33 chr7:50423591-50423671 0.00052 30_[+2]_42 chr18:9707841-9707921 0.00052 9_[+2]_63 chr4:160025604-160025684 0.00054 13_[+2]_59 chr19:13094594-13094674 0.00059 15_[+2]_57 chr1:203274696-203274776 0.00066 10_[+2]_62 chr7:105753104-105753184 0.00075 59_[+2]_13 chr6:163834590-163834670 0.00081 22_[+2]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCTYCCT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CYCTYCCT width=8 seqs=62 chr4:145058863-145058943 ( 34) CTCTCCCT 1 chr2:55276236-55276316 ( 27) CTCTCCCT 1 chr1:161923248-161923328 ( 9) CTCTCCCT 1 chr3:136559307-136559387 ( 59) CTCTCCCT 1 chr6:26924717-26924797 ( 28) CTCTCCCT 1 chr1:156833068-156833148 ( 36) CTCTTCCT 1 chr17:55063233-55063313 ( 44) CTCTTCCT 1 chr19:4081860-4081940 ( 51) CTCTTCCT 1 chr1:246345586-246345666 ( 62) CTCTTCCT 1 chr10:72337069-72337149 ( 42) CTCTTCCT 1 chr6:138187427-138187507 ( 19) CCCTCCCT 1 chr19:10534934-10535014 ( 33) CCCTCCCT 1 chrX:39977202-39977282 ( 56) CCCTCCCT 1 chr8:30670343-30670423 ( 4) CCCTCCCT 1 chr5:88425200-88425280 ( 59) TTCTCCCT 1 chr8:33330614-33330694 ( 14) TTCTCCCT 1 chr1:27754973-27755053 ( 27) CCCTTCCT 1 chr11:62313144-62313224 ( 45) CCCTTCCT 1 chr1:54412097-54412177 ( 15) CCCTTCCT 1 chr19:10410704-10410784 ( 73) TCCTCCCT 1 chr9:130624988-130625068 ( 57) TCCTCCCT 1 chr13:49684359-49684439 ( 57) CTTTTCCT 1 chr15:90605445-90605525 ( 31) TCCTCCCT 1 chr3:197161012-197161092 ( 26) TCCTCCCT 1 chr9:99445936-99446016 ( 2) CCTTCCCT 1 chr5:149267528-149267608 ( 41) CCTTCCCT 1 chr5:132126300-132126380 ( 38) CCTTCCCT 1 chr1:154974210-154974290 ( 40) CCTTCCCT 1 chr9:116647014-116647094 ( 14) TCCTTCCT 1 chr10:79669655-79669735 ( 10) TTTTCCCT 1 chr1:26201729-26201809 ( 15) TCCTTCCT 1 chr7:105516932-105517012 ( 9) TTTTCCCT 1 chr17:46688367-46688447 ( 20) TTTTTCCT 1 chr2:80397343-80397423 ( 2) CTCTCTCT 1 chr10:93368869-93368949 ( 37) CTCTCTCT 1 chr19:48928215-48928295 ( 70) CTCTCTCT 1 chr7:75496595-75496675 ( 6) CTCTCTCT 1 chr1:153539118-153539198 ( 20) CCCTCCCC 1 chr1:206845504-206845584 ( 45) CCCTCCCC 1 chr19:12893313-12893393 ( 16) CCCTCCCC 1 chr12:110906483-11090656 ( 38) CCCTCCCC 1 chr6:105404062-105404142 ( 49) CCCTCCCC 1 chr10:50374168-50374248 ( 21) TTCTCCCC 1 chr1:182284023-182284103 ( 43) TTCTCCCC 1 chr1:173272518-173272598 ( 62) CTCTTTCT 1 chr20:32297882-32297962 ( 13) CCCTTCCC 1 chr8:128747856-128747936 ( 22) CTTTCCCC 1 chr19:18263458-18263538 ( 38) CTTTCCCC 1 chr6:135628082-135628162 ( 67) TTCTTCCC 1 chr8:129060803-129060883 ( 15) TCCTCCCC 1 chr6:44102288-44102368 ( 40) CCCTTTCT 1 chr1:31574123-31574203 ( 32) CTTTTCCC 1 chr1:202133699-202133779 ( 14) CCTTCCCC 1 chr8:17925175-17925255 ( 50) TCCTTCCC 1 chr3:182433958-182434038 ( 40) TTTTCCCC 1 chr7:50423591-50423671 ( 31) CTTTTTCT 1 chr18:9707841-9707921 ( 10) CTTTTTCT 1 chr4:160025604-160025684 ( 14) CCTTTCCC 1 chr19:13094594-13094674 ( 16) TCTTCCCC 1 chr1:203274696-203274776 ( 11) CTCTCACT 1 chr7:105753104-105753184 ( 60) CCCTCACT 1 chr6:163834590-163834670 ( 23) TCCTCTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCTYCCT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.49826 E= 1.4e-004 -1260 126 -1260 61 -1260 79 -1260 131 -1260 132 -1260 45 -1260 -1260 -1260 231 -1260 119 -1260 75 -266 151 -1260 -47 -1260 179 -1260 -1260 -1260 8 -1260 179 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCTYCCT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 62 E= 1.4e-004 0.000000 0.693548 0.000000 0.306452 0.000000 0.500000 0.000000 0.500000 0.000000 0.725806 0.000000 0.274194 0.000000 0.000000 0.000000 1.000000 0.000000 0.661290 0.000000 0.338710 0.032258 0.822581 0.000000 0.145161 0.000000 1.000000 0.000000 0.000000 0.000000 0.306452 0.000000 0.693548 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCTYCCT MEME-2 regular expression -------------------------------------------------------------------------------- [CT][CT][CT]T[CT]CC[TC] -------------------------------------------------------------------------------- Time 8.85 secs. ******************************************************************************** ******************************************************************************** MOTIF RGAGGRAG MEME-3 width = 8 sites = 96 llr = 638 E-value = 3.6e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif RGAGGRAG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 5192357: pos.-specific C :2:::::: probability G 5818753a matrix T :::::::: bits 2.3 2.1 * 1.9 * 1.6 * * Relative 1.4 * ** Entropy 1.2 ** ** (9.6 bits) 0.9 * ****** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGAGGGAG consensus A AAAG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAGGRAG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:12570572-12570652 57 1.50e-05 GTGCATGCAG AGAGGAAG GAAGGGAGCT chr1:54841577-54841657 56 1.50e-05 agagcaggga agaggaag gagagggata chr11:67080190-67080270 61 1.50e-05 GTAAGAGAAG AGAGGAAG TCAGTGCTAT chr19:2945317-2945397 25 1.50e-05 TGCGGGGAGG AGAGGAAG GGCACGGAGT chr6:52859869-52859949 38 1.50e-05 ACAAAGGACA AGAGGAAG AAAAGACAAG chr7:149457807-149457887 17 1.50e-05 GAAAGGACTG AGAGGAAG ATGAAGGGTT chr8:38240640-38240720 69 1.50e-05 GATAAGAACG AGAGGAAG AACC chr19:45348873-45348953 5 1.50e-05 acag agaggaag acccaaagag chr5:67621242-67621322 22 1.50e-05 ggatgacaga agaggaag aagaagagga chr3:138476401-138476481 29 1.50e-05 ATGTAAGAAA AGAggaag gaagaaagga chr6:3229216-3229296 49 4.74e-05 Tgagagagag agagaaag agagagagag chr4:123697265-123697345 73 4.74e-05 ggagggagag agagaaag chr1:21503266-21503346 4 4.74e-05 CCC GGAGGAAG CGGCGCCCTT chr6:16238624-16238704 51 4.74e-05 GGCGGCGCGA GGAGGAAG GGCTTCGCCG chr7:123173006-123173086 40 4.74e-05 GGAGGAGGCA GGAGGAAG AAAGGGGGGT chr4:160025604-160025684 71 6.98e-05 agagagagag agagggag ag chr17:74693973-74694053 71 6.98e-05 gaacactaac agagggag ag chr6:26924717-26924797 54 6.98e-05 ccccgccggc agagggag cccgctcagg chr1:31574123-31574203 5 6.98e-05 gtag agagggag gaagggggag chr19:18169478-18169558 53 6.98e-05 GTGGGCAGAA AGAGGGAG GATTCAGGGT chr7:945279-945359 66 8.48e-05 aaaggagaaa ggagaaag gagaaag chr9:116647014-116647094 55 1.33e-04 agagagagag agagagag agagagagag chr6:32158074-32158154 4 1.33e-04 cgg agagagag acacagaaac chr1:206612706-206612786 40 1.33e-04 TGCAGATAAG GGAGGGAG AAGATAAGCC chr7:100075934-100076014 27 1.33e-04 agagagagag agagagag agagagtgtg chr5:95043419-95043499 22 1.33e-04 aagtccttga ggagggag ctgccagtga chr6:16005304-16005384 64 1.33e-04 GATGAGAGAG AGAGAGAG AGATCCCTG chr5:121485558-121485638 71 1.33e-04 agagagagag agagagag gg chr22:39679653-39679733 25 1.33e-04 GTCCCTGGCC GGAGGGAG GGGGCGGACC chr1:24828633-24828713 67 1.33e-04 agtaagagga ggagggag agcggg chr1:54412097-54412177 73 1.33e-04 GGCCGCGGGA GGAGGGAG chr19:7099084-7099164 62 1.33e-04 TGGCCAGGAC GGAGGGAG GGGAAGTTTC chr19:38761437-38761517 68 1.66e-04 ATGTGAGGCG GGAGAGAG CCCAG chr10:93368869-93368949 13 1.87e-04 ATAGAAACTC AGAAAAAG CTAAACCTGT chr14:77843474-77843554 26 1.87e-04 CCTGCAGGCC GGAAGAAG CGGCGCGGCG chr19:56165962-56166042 43 1.87e-04 GCAAGTCCGT GGAAGAAG CCAAAGACTG chr12:102249412-10224949 34 2.02e-04 TTCAACAGGG AGAAGGAG CTATGTGTAA chr17:71007348-71007428 72 2.39e-04 ggcagggggg acaggaag g chr15:68174881-68174961 32 2.39e-04 ATATAGCAGA ACAGGAAG CTACTGTCAA chr6:37175880-37175960 53 2.39e-04 ggaccggagt agaggagg gacttgatct chr19:41255554-41255634 63 2.39e-04 ACTTGGGGGT AGAGGAGG AGATGGAATG chrX:119384588-119384668 9 2.39e-04 CGCTCGGA AGAGGAGG GCGCCTTTGG chr17:56441744-56441824 55 2.82e-04 TAGCAGTGCC AGAAAGAG AACAAAAAGC chr1:226150068-226150148 34 2.82e-04 CTGTAGCGGG GGAAGGAG GAAAGAAGAC chr17:40828047-40828127 55 2.82e-04 TGGCGGAGGC GGAAGGAG ACGGGATGGG chr10:75757362-75757442 40 2.82e-04 GGGAGGGAAT GGAAGGAG TATTTTGAGG chr7:142654358-142654438 49 3.61e-04 ggggtaaggg agagaagg aatgtacggg chr2:201374943-201375023 65 3.61e-04 AACACACGGT AGAGAAGG CCAGGGCT chr7:76009541-76009621 20 3.61e-04 CCGTGACTCA GCAGGAAG GCGCGACCAG chr17:40828679-40828759 33 3.61e-04 aagaggacag ggaggagg CAGTGTCCTG chr12:112213710-11221379 21 3.61e-04 AATGTAAACC GGAGGAGG TTTCCAGCGT chr19:49496876-49496956 61 3.61e-04 CTGAGCAAAA GGAGGAGG AGCCAGGAGA chr16:53089687-53089767 61 3.61e-04 TGGACAAGGA ACAGAAAG ACACCAGTGT chr2:120517576-120517656 41 4.41e-04 GAGCGGGAGA GGAAAGAG ACTTGGCTTT chr19:47616465-47616545 41 4.41e-04 GAAGGCCGGC GGAAAGAG CCGAAGGCAA chr5:154215084-154215164 23 4.41e-04 TATTTTAGAA GGAAAGAG TGAATTGTAC chr16:1660772-1660852 9 4.41e-04 GAGCGGCC GGAAAGAG CCGAAGGCGA chr19:56904552-56904632 73 4.77e-04 GAGGCTGGAA GCAGAAAG chr19:1203630-1203710 18 4.77e-04 AACCATATGA GCAGAAAG CAGTTAAGCT chr1:43284770-43284850 15 4.77e-04 TGTTGAAAGT GGAGAAGG TGTGATGAGT chr1:27754973-27755053 69 5.96e-04 TGAAGCAGGT GGAGGGGG AGGG chr2:242674208-242674288 20 5.96e-04 GCCTGTGGGG GGAGGGGG ACGGCGCTGC chr1:19734342-19734422 1 5.96e-04 . GGAGGGGG AGAGACCCTC chr1:54872331-54872411 35 5.96e-04 GCCCCAGCGA GGAGGGGG ATCTGACCCG chr2:65586710-65586790 14 5.96e-04 CATGTTTGCA GCAGGGAG CCCAACCAAG chr5:1105827-1105907 29 6.42e-04 CAGCATCTGA GAAGGAAG GCCAAAGGAG chr1:228674430-228674510 20 6.42e-04 GCGGGTCCCT GAAGGAAG GGTGCACGCA chr7:158768331-158768411 2 6.42e-04 g gaaggaaG ACAggagggg chr12:54763979-54764059 72 6.42e-04 CAGTACGGGG AGAAGAGG A chr11:67250534-67250614 73 6.57e-04 GAAGTTGCCG AAAGGGAG chr7:116057885-116057965 69 7.12e-04 ACTTCCTTAG GCAGAGAG AAAC chr19:2841113-2841193 25 7.12e-04 CGAACTGCGG GGAGAGGG CGATTCCGCC chr10:79669655-79669735 73 7.75e-04 CTGTGACTAA GCAAGAAG chr8:33330614-33330694 71 7.75e-04 GATCAGGAGC GGAAGAGG CG chr19:13094594-13094674 5 8.44e-04 AGTC AGAAGGGG CGGTCTTCCC chr8:131012275-131012355 24 8.44e-04 AACTGTAAGG ACAAGGAG CATGCATGAC chr2:159362108-159362188 35 8.72e-04 TTAAGGTGAG AAAAGAAG CAGGGTGGGT chr8:30670343-30670423 46 8.97e-04 ATTTCCGCCG GGAAAAGG CGAGCAGGCG chr8:66655622-66655702 34 1.00e-03 AGGAAAAGTA GAAGAGAG ATAGCGAAGG chr10:80808114-80808194 37 1.00e-03 ATCACTTCAG AGAGGAAA AGGCCACCGG chr8:125647793-125647873 11 1.06e-03 TACCCAGAGC ACAGAAGG TCcttatcac chr6:163834590-163834670 71 1.06e-03 CACGAACACC GAAAGAAG CC chr3:46977035-46977115 64 1.10e-03 TGGGCAGTAC ACAGGGGG CTGGGGGAA chr15:41222845-41222925 58 1.10e-03 CTCCGCCACC ACAGGGGG GCGACACGGC chr16:14013668-14013748 44 1.10e-03 AGCTACACCG ACAGGGGG CGCCAGCCCC chr1:36621347-36621427 62 1.20e-03 CTCCAGGGTG GGAAAGGG GAGTCCCAGC chr3:194898906-194898986 66 1.24e-03 cttggctgca gcagaagg ttcaaac chr12:1714388-1714468 42 1.33e-03 tatgtgAGAG ACAGAGGG TGGTGTGTGT chr10:75911270-75911350 73 1.33e-03 GTCGTGGCCC GCAGGGGG chr3:154994016-154994096 35 1.44e-03 ctgatgtgaa ggagaaaa actggccatg chr6:138187427-138187507 46 1.53e-03 ATGGGGGTAG GGAGGGAA GCGCCAGTAT chr1:202133699-202133779 36 1.53e-03 TATAGGCAGC AGGGGGAG TGGGCGACTT chr8:28558994-28559074 59 1.53e-03 GCCGGCCGGC AGGGGGAG CGGCGGATCA chr22:20267285-20267365 60 1.80e-03 GAACAGGATT GGGGGGAG CAGAAGAGCC chr5:175875206-175875286 67 1.80e-03 GGCGGGGGGC GGGGGGAG GTTAGT chr19:51871218-51871298 65 1.99e-03 CAGCGTGGCT GGGGAGAG CGGGCGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAGGRAG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:12570572-12570652 1.5e-05 56_[+3]_16 chr1:54841577-54841657 1.5e-05 55_[+3]_17 chr11:67080190-67080270 1.5e-05 60_[+3]_12 chr19:2945317-2945397 1.5e-05 24_[+3]_48 chr6:52859869-52859949 1.5e-05 37_[+3]_35 chr7:149457807-149457887 1.5e-05 16_[+3]_56 chr8:38240640-38240720 1.5e-05 68_[+3]_4 chr19:45348873-45348953 1.5e-05 4_[+3]_68 chr5:67621242-67621322 1.5e-05 21_[+3]_51 chr3:138476401-138476481 1.5e-05 28_[+3]_44 chr6:3229216-3229296 4.7e-05 48_[+3]_24 chr4:123697265-123697345 4.7e-05 72_[+3] chr1:21503266-21503346 4.7e-05 3_[+3]_69 chr6:16238624-16238704 4.7e-05 50_[+3]_22 chr7:123173006-123173086 4.7e-05 39_[+3]_33 chr4:160025604-160025684 7e-05 70_[+3]_2 chr17:74693973-74694053 7e-05 70_[+3]_2 chr6:26924717-26924797 7e-05 53_[+3]_19 chr1:31574123-31574203 7e-05 4_[+3]_68 chr19:18169478-18169558 7e-05 52_[+3]_20 chr7:945279-945359 8.5e-05 65_[+3]_7 chr9:116647014-116647094 0.00013 54_[+3]_18 chr6:32158074-32158154 0.00013 3_[+3]_69 chr1:206612706-206612786 0.00013 39_[+3]_33 chr7:100075934-100076014 0.00013 26_[+3]_46 chr5:95043419-95043499 0.00013 21_[+3]_51 chr6:16005304-16005384 0.00013 63_[+3]_9 chr5:121485558-121485638 0.00013 70_[+3]_2 chr22:39679653-39679733 0.00013 24_[+3]_48 chr1:24828633-24828713 0.00013 66_[+3]_6 chr1:54412097-54412177 0.00013 72_[+3] chr19:7099084-7099164 0.00013 61_[+3]_11 chr19:38761437-38761517 0.00017 67_[+3]_5 chr10:93368869-93368949 0.00019 12_[+3]_60 chr14:77843474-77843554 0.00019 25_[+3]_47 chr19:56165962-56166042 0.00019 42_[+3]_30 chr12:102249412-10224949 0.0002 33_[+3]_39 chr17:71007348-71007428 0.00024 71_[+3]_1 chr15:68174881-68174961 0.00024 31_[+3]_41 chr6:37175880-37175960 0.00024 52_[+3]_20 chr19:41255554-41255634 0.00024 62_[+3]_10 chrX:119384588-119384668 0.00024 8_[+3]_64 chr17:56441744-56441824 0.00028 54_[+3]_18 chr1:226150068-226150148 0.00028 33_[+3]_39 chr17:40828047-40828127 0.00028 54_[+3]_18 chr10:75757362-75757442 0.00028 39_[+3]_33 chr7:142654358-142654438 0.00036 48_[+3]_24 chr2:201374943-201375023 0.00036 64_[+3]_8 chr7:76009541-76009621 0.00036 19_[+3]_53 chr17:40828679-40828759 0.00036 32_[+3]_40 chr12:112213710-11221379 0.00036 20_[+3]_52 chr19:49496876-49496956 0.00036 60_[+3]_12 chr16:53089687-53089767 0.00036 60_[+3]_12 chr2:120517576-120517656 0.00044 40_[+3]_32 chr19:47616465-47616545 0.00044 40_[+3]_32 chr5:154215084-154215164 0.00044 22_[+3]_50 chr16:1660772-1660852 0.00044 8_[+3]_64 chr19:56904552-56904632 0.00048 72_[+3] chr19:1203630-1203710 0.00048 17_[+3]_55 chr1:43284770-43284850 0.00048 14_[+3]_58 chr1:27754973-27755053 0.0006 68_[+3]_4 chr2:242674208-242674288 0.0006 19_[+3]_53 chr1:19734342-19734422 0.0006 [+3]_72 chr1:54872331-54872411 0.0006 34_[+3]_38 chr2:65586710-65586790 0.0006 13_[+3]_59 chr5:1105827-1105907 0.00064 28_[+3]_44 chr1:228674430-228674510 0.00064 19_[+3]_53 chr7:158768331-158768411 0.00064 1_[+3]_71 chr12:54763979-54764059 0.00064 71_[+3]_1 chr11:67250534-67250614 0.00066 72_[+3] chr7:116057885-116057965 0.00071 68_[+3]_4 chr19:2841113-2841193 0.00071 24_[+3]_48 chr10:79669655-79669735 0.00078 72_[+3] chr8:33330614-33330694 0.00078 70_[+3]_2 chr19:13094594-13094674 0.00084 4_[+3]_68 chr8:131012275-131012355 0.00084 23_[+3]_49 chr2:159362108-159362188 0.00087 34_[+3]_38 chr8:30670343-30670423 0.0009 45_[+3]_27 chr8:66655622-66655702 0.001 33_[+3]_39 chr10:80808114-80808194 0.001 36_[+3]_36 chr8:125647793-125647873 0.0011 10_[+3]_62 chr6:163834590-163834670 0.0011 70_[+3]_2 chr3:46977035-46977115 0.0011 63_[+3]_9 chr15:41222845-41222925 0.0011 57_[+3]_15 chr16:14013668-14013748 0.0011 43_[+3]_29 chr1:36621347-36621427 0.0012 61_[+3]_11 chr3:194898906-194898986 0.0012 65_[+3]_7 chr12:1714388-1714468 0.0013 41_[+3]_31 chr10:75911270-75911350 0.0013 72_[+3] chr3:154994016-154994096 0.0014 34_[+3]_38 chr6:138187427-138187507 0.0015 45_[+3]_27 chr1:202133699-202133779 0.0015 35_[+3]_37 chr8:28558994-28559074 0.0015 58_[+3]_14 chr22:20267285-20267365 0.0018 59_[+3]_13 chr5:175875206-175875286 0.0018 66_[+3]_6 chr19:51871218-51871298 0.002 64_[+3]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAGGRAG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RGAGGRAG width=8 seqs=96 chr1:12570572-12570652 ( 57) AGAGGAAG 1 chr1:54841577-54841657 ( 56) AGAGGAAG 1 chr11:67080190-67080270 ( 61) AGAGGAAG 1 chr19:2945317-2945397 ( 25) AGAGGAAG 1 chr6:52859869-52859949 ( 38) AGAGGAAG 1 chr7:149457807-149457887 ( 17) AGAGGAAG 1 chr8:38240640-38240720 ( 69) AGAGGAAG 1 chr19:45348873-45348953 ( 5) AGAGGAAG 1 chr5:67621242-67621322 ( 22) AGAGGAAG 1 chr3:138476401-138476481 ( 29) AGAGGAAG 1 chr6:3229216-3229296 ( 49) AGAGAAAG 1 chr4:123697265-123697345 ( 73) AGAGAAAG 1 chr1:21503266-21503346 ( 4) GGAGGAAG 1 chr6:16238624-16238704 ( 51) GGAGGAAG 1 chr7:123173006-123173086 ( 40) GGAGGAAG 1 chr4:160025604-160025684 ( 71) AGAGGGAG 1 chr17:74693973-74694053 ( 71) AGAGGGAG 1 chr6:26924717-26924797 ( 54) AGAGGGAG 1 chr1:31574123-31574203 ( 5) AGAGGGAG 1 chr19:18169478-18169558 ( 53) AGAGGGAG 1 chr7:945279-945359 ( 66) GGAGAAAG 1 chr9:116647014-116647094 ( 55) AGAGAGAG 1 chr6:32158074-32158154 ( 4) AGAGAGAG 1 chr1:206612706-206612786 ( 40) GGAGGGAG 1 chr7:100075934-100076014 ( 27) AGAGAGAG 1 chr5:95043419-95043499 ( 22) GGAGGGAG 1 chr6:16005304-16005384 ( 64) AGAGAGAG 1 chr5:121485558-121485638 ( 71) AGAGAGAG 1 chr22:39679653-39679733 ( 25) GGAGGGAG 1 chr1:24828633-24828713 ( 67) GGAGGGAG 1 chr1:54412097-54412177 ( 73) GGAGGGAG 1 chr19:7099084-7099164 ( 62) GGAGGGAG 1 chr19:38761437-38761517 ( 68) GGAGAGAG 1 chr10:93368869-93368949 ( 13) AGAAAAAG 1 chr14:77843474-77843554 ( 26) GGAAGAAG 1 chr19:56165962-56166042 ( 43) GGAAGAAG 1 chr12:102249412-10224949 ( 34) AGAAGGAG 1 chr17:71007348-71007428 ( 72) ACAGGAAG 1 chr15:68174881-68174961 ( 32) ACAGGAAG 1 chr6:37175880-37175960 ( 53) AGAGGAGG 1 chr19:41255554-41255634 ( 63) AGAGGAGG 1 chrX:119384588-119384668 ( 9) AGAGGAGG 1 chr17:56441744-56441824 ( 55) AGAAAGAG 1 chr1:226150068-226150148 ( 34) GGAAGGAG 1 chr17:40828047-40828127 ( 55) GGAAGGAG 1 chr10:75757362-75757442 ( 40) GGAAGGAG 1 chr7:142654358-142654438 ( 49) AGAGAAGG 1 chr2:201374943-201375023 ( 65) AGAGAAGG 1 chr7:76009541-76009621 ( 20) GCAGGAAG 1 chr17:40828679-40828759 ( 33) GGAGGAGG 1 chr12:112213710-11221379 ( 21) GGAGGAGG 1 chr19:49496876-49496956 ( 61) GGAGGAGG 1 chr16:53089687-53089767 ( 61) ACAGAAAG 1 chr2:120517576-120517656 ( 41) GGAAAGAG 1 chr19:47616465-47616545 ( 41) GGAAAGAG 1 chr5:154215084-154215164 ( 23) GGAAAGAG 1 chr16:1660772-1660852 ( 9) GGAAAGAG 1 chr19:56904552-56904632 ( 73) GCAGAAAG 1 chr19:1203630-1203710 ( 18) GCAGAAAG 1 chr1:43284770-43284850 ( 15) GGAGAAGG 1 chr1:27754973-27755053 ( 69) GGAGGGGG 1 chr2:242674208-242674288 ( 20) GGAGGGGG 1 chr1:19734342-19734422 ( 1) GGAGGGGG 1 chr1:54872331-54872411 ( 35) GGAGGGGG 1 chr2:65586710-65586790 ( 14) GCAGGGAG 1 chr5:1105827-1105907 ( 29) GAAGGAAG 1 chr1:228674430-228674510 ( 20) GAAGGAAG 1 chr7:158768331-158768411 ( 2) GAAGGAAG 1 chr12:54763979-54764059 ( 72) AGAAGAGG 1 chr11:67250534-67250614 ( 73) AAAGGGAG 1 chr7:116057885-116057965 ( 69) GCAGAGAG 1 chr19:2841113-2841193 ( 25) GGAGAGGG 1 chr10:79669655-79669735 ( 73) GCAAGAAG 1 chr8:33330614-33330694 ( 71) GGAAGAGG 1 chr19:13094594-13094674 ( 5) AGAAGGGG 1 chr8:131012275-131012355 ( 24) ACAAGGAG 1 chr2:159362108-159362188 ( 35) AAAAGAAG 1 chr8:30670343-30670423 ( 46) GGAAAAGG 1 chr8:66655622-66655702 ( 34) GAAGAGAG 1 chr10:80808114-80808194 ( 37) AGAGGAAA 1 chr8:125647793-125647873 ( 11) ACAGAAGG 1 chr6:163834590-163834670 ( 71) GAAAGAAG 1 chr3:46977035-46977115 ( 64) ACAGGGGG 1 chr15:41222845-41222925 ( 58) ACAGGGGG 1 chr16:14013668-14013748 ( 44) ACAGGGGG 1 chr1:36621347-36621427 ( 62) GGAAAGGG 1 chr3:194898906-194898986 ( 66) GCAGAAGG 1 chr12:1714388-1714468 ( 42) ACAGAGGG 1 chr10:75911270-75911350 ( 73) GCAGGGGG 1 chr3:154994016-154994096 ( 35) GGAGAAAA 1 chr6:138187427-138187507 ( 46) GGAGGGAA 1 chr1:202133699-202133779 ( 36) AGGGGGAG 1 chr8:28558994-28559074 ( 59) AGGGGGAG 1 chr22:20267285-20267365 ( 60) GGGGGGAG 1 chr5:175875206-175875286 ( 67) GGGGGGAG 1 chr19:51871218-51871298 ( 65) GGGGAGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAGGRAG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.15308 E= 3.6e-005 123 -1323 77 -1323 -148 -71 130 -1323 222 -1323 -255 -1323 10 -1323 136 -1323 66 -1323 115 -1323 126 -1323 74 -1323 184 -1323 -17 -1323 -271 -1323 167 -1323 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAGGRAG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 96 E= 3.6e-005 0.479167 0.000000 0.520833 0.000000 0.072917 0.177083 0.750000 0.000000 0.947917 0.000000 0.052083 0.000000 0.218750 0.000000 0.781250 0.000000 0.322917 0.000000 0.677083 0.000000 0.489583 0.000000 0.510417 0.000000 0.729167 0.000000 0.270833 0.000000 0.031250 0.000000 0.968750 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAGGRAG MEME-3 regular expression -------------------------------------------------------------------------------- [GA]GA[GA][GA][GA][AG]G -------------------------------------------------------------------------------- Time 12.59 secs. ******************************************************************************** ******************************************************************************** MOTIF TTMTCTCT MEME-4 width = 8 sites = 25 llr = 225 E-value = 1.5e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTMTCTCT MEME-4 Description -------------------------------------------------------------------------------- Simplified A :16:::2: pos.-specific C 2:4:9:81 probability G ::::::1: matrix T 89:a1a:9 bits 2.3 * * 2.1 * * 1.9 * * * 1.6 * * * * Relative 1.4 ** *** * Entropy 1.2 ****** * (13.0 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTATCTCT consensus C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTMTCTCT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr5:132126300-132126380 30 5.63e-06 TGGGTCCTCC TTATCTCT CCTTCCCTTT chr5:88425200-88425280 44 5.63e-06 CATTTCTATC TTATCTCT TACCTCTTTC chr1:19734342-19734422 55 5.63e-06 CAGATGACCC TTATCTCT GCAGAATGGA chr4:145058863-145058943 3 1.36e-05 cc ttctctct tctcccttct chrX:39977202-39977282 11 1.36e-05 CTCGCActct ttctctct ctctctctct chr15:90605445-90605525 7 1.36e-05 ctccct ttctctct ctctctctct chr19:48928215-48928295 57 1.36e-05 GAATTCCAGA Ttctctct tctctctctc chr3:197161012-197161092 48 1.36e-05 ATAACTAGTC TTCTCTCT CCACATAACT chr1:167838840-167838920 3 1.76e-05 tg ttatctat agattccaca chr1:156833068-156833148 23 2.57e-05 ttgcctgtca ctatctct ctgacctctt chr8:22516243-22516323 19 2.57e-05 TATCTTTCTG CTATCTCT AGCTGGGCAA chr1:246345586-246345666 51 3.13e-05 ATCTCTCGAC TTCTCTAT CACCTCTTCC chr12:102249412-10224949 70 4.10e-05 TCTTGGTGTC TAATCTCT TCC chr6:135628082-135628162 43 4.10e-05 AACTATTTCC TAATCTCT TATCACTAGG chr6:20213864-20213944 9 4.10e-05 CCAGATGA TAATCTCT ACcactcaca chr3:182433958-182434038 72 4.69e-05 gggagctgtc ttatctgt g chr1:182284023-182284103 35 5.50e-05 CCTCCAAGCC TTATCTCC TTCTCCCCTC chr8:125647793-125647873 60 5.50e-05 agctttcagg ttatctcc catctgccat chr9:135998648-135998728 29 5.50e-05 TCTGCTCTCT TTATCTCC TTCGCTGAGT chr10:93368869-93368949 51 6.65e-05 ctctctctct ctctctct gtctctctgt chr3:136559307-136559387 14 8.02e-05 TGCCCTTCTT TTCTTTct tcctcctcct chr10:72337069-72337149 24 8.02e-05 cctcctcttt ttctttct ttcattcttt chr22:20046608-20046688 2 9.43e-05 g ttctctgt ccagtcaggg chr18:9848292-9848372 61 9.43e-05 gtccgtctat ctatctat tcatctgtac chr8:67560707-67560787 69 9.43e-05 atctatctat ctatctat ctat -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTMTCTCT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:132126300-132126380 5.6e-06 29_[+4]_43 chr5:88425200-88425280 5.6e-06 43_[+4]_29 chr1:19734342-19734422 5.6e-06 54_[+4]_18 chr4:145058863-145058943 1.4e-05 2_[+4]_70 chrX:39977202-39977282 1.4e-05 10_[+4]_62 chr15:90605445-90605525 1.4e-05 6_[+4]_66 chr19:48928215-48928295 1.4e-05 56_[+4]_16 chr3:197161012-197161092 1.4e-05 47_[+4]_25 chr1:167838840-167838920 1.8e-05 2_[+4]_70 chr1:156833068-156833148 2.6e-05 22_[+4]_50 chr8:22516243-22516323 2.6e-05 18_[+4]_54 chr1:246345586-246345666 3.1e-05 50_[+4]_22 chr12:102249412-10224949 4.1e-05 69_[+4]_3 chr6:135628082-135628162 4.1e-05 42_[+4]_30 chr6:20213864-20213944 4.1e-05 8_[+4]_64 chr3:182433958-182434038 4.7e-05 71_[+4]_1 chr1:182284023-182284103 5.5e-05 34_[+4]_38 chr8:125647793-125647873 5.5e-05 59_[+4]_13 chr9:135998648-135998728 5.5e-05 28_[+4]_44 chr10:93368869-93368949 6.7e-05 50_[+4]_22 chr3:136559307-136559387 8e-05 13_[+4]_59 chr10:72337069-72337149 8e-05 23_[+4]_49 chr22:20046608-20046688 9.4e-05 1_[+4]_71 chr18:9848292-9848372 9.4e-05 60_[+4]_12 chr8:67560707-67560787 9.4e-05 68_[+4]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTMTCTCT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTMTCTCT width=8 seqs=25 chr5:132126300-132126380 ( 30) TTATCTCT 1 chr5:88425200-88425280 ( 44) TTATCTCT 1 chr1:19734342-19734422 ( 55) TTATCTCT 1 chr4:145058863-145058943 ( 3) TTCTCTCT 1 chrX:39977202-39977282 ( 11) TTCTCTCT 1 chr15:90605445-90605525 ( 7) TTCTCTCT 1 chr19:48928215-48928295 ( 57) TTCTCTCT 1 chr3:197161012-197161092 ( 48) TTCTCTCT 1 chr1:167838840-167838920 ( 3) TTATCTAT 1 chr1:156833068-156833148 ( 23) CTATCTCT 1 chr8:22516243-22516323 ( 19) CTATCTCT 1 chr1:246345586-246345666 ( 51) TTCTCTAT 1 chr12:102249412-10224949 ( 70) TAATCTCT 1 chr6:135628082-135628162 ( 43) TAATCTCT 1 chr6:20213864-20213944 ( 9) TAATCTCT 1 chr3:182433958-182434038 ( 72) TTATCTGT 1 chr1:182284023-182284103 ( 35) TTATCTCC 1 chr8:125647793-125647873 ( 60) TTATCTCC 1 chr9:135998648-135998728 ( 29) TTATCTCC 1 chr10:93368869-93368949 ( 51) CTCTCTCT 1 chr3:136559307-136559387 ( 14) TTCTTTCT 1 chr10:72337069-72337149 ( 24) TTCTTTCT 1 chr22:20046608-20046688 ( 2) TTCTCTGT 1 chr18:9848292-9848372 ( 61) CTATCTAT 1 chr8:67560707-67560787 ( 69) CTATCTAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTMTCTCT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.4326 E= 1.5e-002 -1129 -53 -1129 199 -77 -1129 -1129 213 156 47 -1129 -1129 -1129 -1129 -1129 231 -1129 167 -1129 -133 -1129 -1129 -1129 231 -35 139 -193 -1129 -1129 -127 -1129 213 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTMTCTCT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 1.5e-002 0.000000 0.200000 0.000000 0.800000 0.120000 0.000000 0.000000 0.880000 0.600000 0.400000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.920000 0.000000 0.080000 0.000000 0.000000 0.000000 1.000000 0.160000 0.760000 0.080000 0.000000 0.000000 0.120000 0.000000 0.880000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTMTCTCT MEME-4 regular expression -------------------------------------------------------------------------------- [TC]T[AC]TCTCT -------------------------------------------------------------------------------- Time 16.13 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTGTGWG MEME-5 width = 8 sites = 15 llr = 143 E-value = 9.3e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTGTGWG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::1:15: pos.-specific C :::::1:: probability G :a:9:8:a matrix T a:a:a:5: bits 2.3 * * * 2.1 * * * 1.9 * * * 1.6 *** * * Relative 1.4 *** * ** Entropy 1.2 ***** ** (13.8 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGTGTGTG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGWG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:12570572-12570652 20 1.41e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgCG chr5:149267528-149267608 16 1.41e-05 tgtgtgtgtg tgtgtgtg tctttcttta chr16:88521523-88521603 27 1.41e-05 Ggtgtgtgtg tgtgtgtg tgtgtgtgtg chr2:80397343-80397423 33 1.41e-05 tgtgtgtgtt tgtgtgtg tgtgtgGAGT chr7:100075934-100076014 71 1.41e-05 tgtgtgtgtg tgtgtgtg tg chr3:45252272-45252352 16 1.41e-05 GGGGGGGGTG TGTGTGTG TGCACGCGTG chr5:121485558-121485638 29 1.41e-05 ACTCtgtgtg tgtgtgtg tgtgtgtgtg chr6:27619302-27619382 51 1.41e-05 tgtgtgtgtg tgtgtgtg tgtgCCTGTA chr12:1714388-1714468 67 2.85e-05 TGTTTGTGCC TGTGTGAG TGTGTG chr6:3229216-3229296 35 2.85e-05 TGTGTGTGTG TGTGTgag agagagagag chr5:179247620-179247700 26 4.75e-05 AGCCCAGGCC TGTATGAG TGCCAGGGCC chr8:129060803-129060883 3 4.75e-05 GA TGTATGAG CCGATCCTCC chr6:11921307-11921387 63 7.46e-05 GGTGTCCTGG TGTGTCAG GGTGAGAGAG chr16:1347058-1347138 26 7.46e-05 tgactcagga tgtgtcag ggcagagcag chr19:18169478-18169558 70 9.36e-05 GGATTCAGGG TGTGTAAG GGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGWG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:12570572-12570652 1.4e-05 19_[+5]_53 chr5:149267528-149267608 1.4e-05 15_[+5]_57 chr16:88521523-88521603 1.4e-05 26_[+5]_46 chr2:80397343-80397423 1.4e-05 32_[+5]_40 chr7:100075934-100076014 1.4e-05 70_[+5]_2 chr3:45252272-45252352 1.4e-05 15_[+5]_57 chr5:121485558-121485638 1.4e-05 28_[+5]_44 chr6:27619302-27619382 1.4e-05 50_[+5]_22 chr12:1714388-1714468 2.8e-05 66_[+5]_6 chr6:3229216-3229296 2.8e-05 34_[+5]_38 chr5:179247620-179247700 4.7e-05 25_[+5]_47 chr8:129060803-129060883 4.7e-05 2_[+5]_70 chr6:11921307-11921387 7.5e-05 62_[+5]_10 chr16:1347058-1347138 7.5e-05 25_[+5]_47 chr19:18169478-18169558 9.4e-05 69_[+5]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGWG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTGTGWG width=8 seqs=15 chr1:12570572-12570652 ( 20) TGTGTGTG 1 chr5:149267528-149267608 ( 16) TGTGTGTG 1 chr16:88521523-88521603 ( 27) TGTGTGTG 1 chr2:80397343-80397423 ( 33) TGTGTGTG 1 chr7:100075934-100076014 ( 71) TGTGTGTG 1 chr3:45252272-45252352 ( 16) TGTGTGTG 1 chr5:121485558-121485638 ( 29) TGTGTGTG 1 chr6:27619302-27619382 ( 51) TGTGTGTG 1 chr12:1714388-1714468 ( 67) TGTGTGAG 1 chr6:3229216-3229296 ( 35) TGTGTGAG 1 chr5:179247620-179247700 ( 26) TGTATGAG 1 chr8:129060803-129060883 ( 3) TGTATGAG 1 chr6:11921307-11921387 ( 63) TGTGTCAG 1 chr16:1347058-1347138 ( 26) TGTGTCAG 1 chr19:18169478-18169558 ( 70) TGTGTAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGWG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.9222 E= 9.3e+002 -1055 -1055 -1055 231 -1055 -1055 171 -1055 -1055 -1055 -1055 231 -61 -1055 151 -1055 -1055 -1055 -1055 231 -161 -112 139 -1055 119 -1055 -1055 141 -1055 -1055 171 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGWG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 9.3e+002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.133333 0.000000 0.866667 0.000000 0.000000 0.000000 0.000000 1.000000 0.066667 0.133333 0.800000 0.000000 0.466667 0.000000 0.000000 0.533333 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGWG MEME-5 regular expression -------------------------------------------------------------------------------- TGTGTG[TA]G -------------------------------------------------------------------------------- Time 19.60 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:14013668-14013748 4.28e-01 80 chr16:56228400-56228480 9.85e-01 80 chr2:208394557-208394637 6.59e-01 80 chr2:133025758-133025838 3.22e-01 80 chr19:7099084-7099164 4.53e-01 80 chr1:1136942-1137022 3.14e-01 80 chr22:51021151-51021231 9.99e-01 80 chr3:138476401-138476481 1.23e-01 28_[+3(1.50e-05)]_44 chr16:28936437-28936517 9.88e-01 80 chr1:154974210-154974290 5.87e-02 80 chr9:132259062-132259142 6.71e-01 80 chr4:1408942-1409022 4.81e-02 68_[+1(8.50e-05)]_4 chr10:72337069-72337149 7.72e-03 23_[+4(8.02e-05)]_10_[+2(2.82e-05)]_\ 12_[+4(8.02e-05)]_3_[+2(1.00e-04)] chr1:54412097-54412177 4.79e-04 14_[+2(9.20e-05)]_58 chr9:131314567-131314647 7.00e-01 80 chr16:1660772-1660852 5.48e-01 80 chr19:40951994-40952074 7.53e-01 80 chr19:39467236-39467316 5.91e-01 80 chr22:37595578-37595658 9.75e-01 80 chr15:41222845-41222925 4.58e-01 80 chr8:30670343-30670423 3.37e-02 3_[+2(5.22e-05)]_69 chr10:75757362-75757442 1.09e-01 80 chr8:28558994-28559074 6.21e-01 80 chr1:246345586-246345666 3.16e-03 50_[+4(3.13e-05)]_3_[+2(2.82e-05)]_\ 11 chr12:54763979-54764059 4.43e-01 80 chr1:7765211-7765291 1.64e-02 59_[+1(2.85e-05)]_13 chr19:18169478-18169558 8.93e-03 52_[+3(6.98e-05)]_9_[+5(9.36e-05)]_\ 3 chr21:38446100-38446180 4.18e-03 35_[+1(6.46e-05)]_37 chr3:197161012-197161092 8.69e-03 47_[+4(1.36e-05)]_25 chr17:40828047-40828127 4.64e-01 80 chr6:20213864-20213944 1.73e-01 8_[+4(4.10e-05)]_64 chr19:56165962-56166042 3.94e-01 80 chr7:158768331-158768411 2.75e-01 80 chr7:123173006-123173086 2.41e-01 39_[+3(4.74e-05)]_33 chr7:75496595-75496675 8.50e-07 1_[+4(6.65e-05)]_3_[+1(1.41e-05)]_\ [+5(8.40e-05)]_52 chr1:203274696-203274776 1.07e-01 80 chr19:18263458-18263538 7.55e-02 80 chr1:2159223-2159303 8.40e-01 80 chr18:9707841-9707921 8.15e-02 80 chr8:67560707-67560787 1.21e-01 56_[+4(9.43e-05)]_[+4(9.43e-05)]_\ [+4(9.43e-05)] chr6:135628082-135628162 1.03e-02 42_[+4(4.10e-05)]_30 chr1:226150068-226150148 2.92e-01 80 chr17:46688367-46688447 1.54e-01 80 chr1:211751278-211751358 7.06e-01 80 chr2:65586710-65586790 7.73e-02 80 chr1:31574123-31574203 1.59e-02 8_[+3(4.74e-05)]_64 chr9:139481756-139481836 4.48e-01 80 chr1:228674430-228674510 7.49e-01 80 chr1:54872331-54872411 1.43e-01 80 chr7:50423591-50423671 1.99e-02 80 chr17:48891117-48891197 1.00e+00 80 chr19:2494617-2494697 6.82e-01 80 chr6:44102288-44102368 3.04e-01 80 chr15:69755163-69755243 8.10e-01 80 chr6:105404062-105404142 3.43e-01 80 chr5:1105827-1105907 2.23e-01 80 chr6:44042371-44042451 4.42e-01 80 chr9:131182571-131182651 9.48e-01 80 chr7:105516932-105517012 1.46e-01 80 chr19:48928215-48928295 3.07e-03 56_[+4(1.36e-05)]_1_[+4(6.65e-05)]_\ 7 chr15:90605445-90605525 2.12e-03 6_[+4(1.36e-05)]_[+4(6.65e-05)]_58 chr6:26924717-26924797 1.80e-03 27_[+2(1.67e-05)]_18_[+3(6.98e-05)]_\ 19 chr5:154215084-154215164 7.77e-02 80 chr1:43284770-43284850 1.63e-04 72_[+1(1.41e-05)] chrX:119384588-119384668 9.07e-02 80 chr1:167895913-167895993 9.86e-01 80 chr1:24828633-24828713 8.62e-02 80 chr6:27619302-27619382 2.69e-04 36_[+1(1.41e-05)]_[+1(1.41e-05)]_\ [+1(1.41e-05)]_20 chr14:77843474-77843554 5.06e-01 80 chr2:61922205-61922285 1.73e-02 80 chr22:39679653-39679733 6.95e-02 80 chr17:74693973-74694053 3.49e-01 70_[+3(6.98e-05)]_2 chr19:49588277-49588357 5.17e-01 80 chr22:23285002-23285082 9.35e-01 80 chr12:110906483-11090656 5.51e-01 80 chr19:51871218-51871298 7.62e-01 80 chr16:53089687-53089767 6.37e-02 80 chr3:194898906-194898986 1.12e-01 80 chr9:4852588-4852668 8.92e-01 80 chr6:125283050-125283130 1.67e-03 1_[+1(1.41e-05)]_71 chr17:8067735-8067815 5.50e-01 80 chr5:121485558-121485638 1.99e-05 22_[+1(1.41e-05)]_[+1(1.41e-05)]_\ [+1(1.41e-05)]_34 chr1:19734342-19734422 1.81e-04 54_[+4(5.63e-06)]_18 chr14:23564243-23564323 9.89e-01 80 chr5:67621242-67621322 1.38e-01 21_[+3(1.50e-05)]_13_[+3(8.48e-05)]_\ 7_[+3(4.74e-05)]_4_[+3(4.74e-05)]_3 chr6:16238624-16238704 1.56e-02 50_[+3(4.74e-05)]_22 chr19:45348873-45348953 1.07e-01 4_[+3(1.50e-05)]_68 chr5:175875206-175875286 6.74e-01 80 chr9:123964364-123964444 5.46e-01 80 chrX:39977202-39977282 1.16e-03 10_[+4(1.36e-05)]_[+4(6.65e-05)]_29_\ [+2(5.22e-05)]_7_[+4(1.36e-05)]_2 chr6:16005304-16005384 1.93e-04 6_[+1(4.19e-05)]_66 chr2:159362108-159362188 1.81e-01 80 chr3:136559307-136559387 6.81e-03 13_[+4(8.02e-05)]_8_[+2(2.82e-05)]_\ 1_[+2(5.22e-05)]_[+2(9.20e-05)]_4_[+2(1.67e-05)]_[+2(5.22e-05)]_6 chr8:128747856-128747936 4.73e-01 80 chr6:163834590-163834670 1.25e-01 80 chr19:12893313-12893393 2.03e-01 80 chr1:21503266-21503346 2.39e-02 3_[+3(4.74e-05)]_69 chr8:38240640-38240720 5.62e-02 68_[+3(1.50e-05)]_4 chr8:129060803-129060883 3.51e-02 2_[+5(4.75e-05)]_70 chr5:95043419-95043499 2.29e-02 80 chr19:2841113-2841193 4.84e-01 80 chr11:62313144-62313224 3.43e-01 44_[+2(9.20e-05)]_28 chr6:2989339-2989419 4.68e-01 80 chr9:135998648-135998728 2.41e-02 10_[+4(5.50e-05)]_10_[+4(5.50e-05)]_\ 44 chr22:19706489-19706569 9.07e-01 80 chr1:33220095-33220175 9.89e-01 80 chr19:47616465-47616545 6.28e-01 80 chr11:65083114-65083194 8.12e-01 80 chr16:3156426-3156506 7.74e-01 80 chr7:149457807-149457887 5.07e-03 16_[+3(1.50e-05)]_56 chr22:19974519-19974599 5.80e-01 80 chr1:173272518-173272598 6.27e-04 40_[+4(4.69e-05)]_32 chr9:100174167-100174247 3.56e-01 80 chr12:111834970-11183505 9.87e-01 80 chr3:154994016-154994096 4.73e-01 80 chr19:49496876-49496956 3.34e-01 80 chr2:220436840-220436920 4.85e-01 80 chr9:134249135-134249215 6.67e-01 80 chr3:45252272-45252352 2.25e-04 13_[+1(1.41e-05)]_10_[+1(1.41e-05)]_\ 41 chr9:101077920-101078000 6.12e-01 80 chr22:20267285-20267365 7.80e-02 80 chr20:60932457-60932537 3.64e-01 80 chr19:38761437-38761517 1.21e-01 80 chr17:74016073-74016153 1.00e+00 80 chr2:242674208-242674288 1.31e-01 80 chr15:93461205-93461285 1.29e-01 80 chr10:75911270-75911350 3.69e-02 80 chr7:116057885-116057965 1.52e-01 80 chr19:41255554-41255634 5.15e-01 80 chr8:33330614-33330694 7.00e-03 13_[+2(6.38e-05)]_59 chr19:4081860-4081940 2.18e-02 50_[+2(2.82e-05)]_22 chr19:3572711-3572791 7.33e-01 80 chr16:88522257-88522337 5.49e-01 80 chr1:167838840-167838920 5.14e-03 2_[+4(1.76e-05)]_70 chr13:114897203-11489728 1.00e+00 80 chr15:91380629-91380709 4.95e-01 80 chr6:36648317-36648397 5.65e-01 80 chr16:1347058-1347138 1.96e-01 25_[+5(7.46e-05)]_47 chr10:93368869-93368949 1.37e-04 34_[+4(1.36e-05)]_[+4(6.65e-05)]_\ [+4(6.65e-05)]_10_[+4(6.65e-05)]_4 chr6:37175880-37175960 7.60e-04 13_[+1(2.85e-05)]_59 chr19:49395476-49395556 4.20e-01 80 chr12:112213710-11221379 1.81e-01 80 chr18:9848292-9848372 4.17e-04 3_[+1(4.19e-05)]_45_[+4(9.43e-05)]_\ 16 chr17:56441744-56441824 5.33e-01 80 chr7:2354483-2354563 9.20e-01 80 chr6:52859869-52859949 1.05e-01 37_[+3(1.50e-05)]_35 chr13:49684359-49684439 1.58e-01 80 chr15:68174881-68174961 3.35e-01 80 chr6:3068580-3068660 9.57e-01 80 chr22:19701576-19701656 7.12e-01 80 chr7:945279-945359 4.25e-01 10_[+3(8.48e-05)]_6_[+3(8.48e-05)]_\ 5_[+3(8.48e-05)]_6_[+3(8.48e-05)]_6_[+3(8.48e-05)]_7 chr19:13049050-13049130 8.91e-01 80 chr4:123697265-123697345 2.24e-01 54_[+3(6.98e-05)]_10_[+3(4.74e-05)] chr6:3229216-3229296 6.69e-06 22_[+1(1.41e-05)]_[+1(1.41e-05)]_10_\ [+3(4.74e-05)]_24 chr9:130624988-130625068 3.11e-02 80 chr1:161923248-161923328 2.87e-02 8_[+2(1.67e-05)]_64 chr5:88425200-88425280 1.51e-03 43_[+4(5.63e-06)]_7_[+2(6.38e-05)]_\ 14 chr3:182433958-182434038 3.21e-05 54_[+1(4.19e-05)]_9_[+4(4.69e-05)]_\ 1 chr1:243419602-243419682 4.03e-01 80 chr8:125647793-125647873 4.44e-02 59_[+4(5.50e-05)]_13 chr10:80808114-80808194 7.24e-03 [+1(6.46e-05)]_72 chr1:202133699-202133779 8.32e-02 80 chr19:39903367-39903447 9.50e-01 80 chr7:101458626-101458706 2.62e-01 80 chr7:101457675-101457755 9.03e-01 80 chr9:128235682-128235762 5.66e-01 80 chr22:20046608-20046688 1.06e-03 1_[+4(9.43e-05)]_52_[+1(8.50e-05)]_\ 11 chr15:41408520-41408600 8.61e-01 80 chr1:182284023-182284103 3.89e-02 34_[+4(5.50e-05)]_38 chr7:100075934-100076014 6.16e-05 40_[+1(1.41e-05)]_[+1(1.41e-05)]_\ [+1(1.41e-05)]_[+1(1.41e-05)]_[+1(1.41e-05)] chr17:45266567-45266647 8.29e-01 80 chr16:50288192-50288272 3.28e-02 80 chr10:50374168-50374248 2.27e-01 80 chr1:206612706-206612786 5.58e-02 80 chr7:116593026-116593106 9.52e-01 80 chr4:160025604-160025684 1.01e-02 70_[+3(6.98e-05)]_2 chr6:11921307-11921387 1.36e-01 62_[+5(7.46e-05)]_10 chr19:2945317-2945397 3.05e-02 24_[+3(1.50e-05)]_48 chr17:71007348-71007428 5.06e-01 80 chr1:142816338-142816418 8.07e-01 80 chr6:144164090-144164170 3.76e-01 80 chr16:88851982-88852062 8.06e-01 80 chr4:1581421-1581501 9.84e-01 80 chr11:695692-695772 7.99e-01 80 chr2:80397343-80397423 1.32e-06 1_[+4(6.65e-05)]_5_[+1(1.41e-05)]_\ [+1(1.41e-05)]_2_[+1(1.41e-05)]_40 chr22:19165842-19165922 6.72e-01 80 chr8:54680921-54681001 9.18e-01 80 chr5:179247620-179247700 5.09e-02 25_[+5(4.75e-05)]_47 chr8:131012275-131012355 4.12e-01 80 chr14:23624619-23624699 5.80e-01 80 chr11:65153899-65153979 1.41e-01 80 chr20:32297882-32297962 3.91e-01 80 chr6:32158074-32158154 4.26e-01 80 chr2:55276236-55276316 1.32e-02 26_[+2(1.67e-05)]_46 chr16:88521523-88521603 3.46e-04 18_[+1(1.41e-05)]_[+1(1.41e-05)]_\ [+1(1.41e-05)]_[+1(1.41e-05)]_[+1(1.41e-05)]_22 chr1:206845504-206845584 2.10e-03 80 chr22:19802739-19802819 6.17e-01 80 chr8:22516243-22516323 2.83e-02 18_[+4(2.57e-05)]_54 chr8:17925175-17925255 3.98e-01 80 chr6:43811076-43811156 5.03e-02 80 chr19:1203630-1203710 4.48e-01 80 chr15:28539849-28539929 1.85e-01 80 chr17:6918105-6918185 1.89e-01 80 chr3:4781477-4781557 2.31e-01 80 chr2:120517576-120517656 4.55e-01 80 chr3:46977035-46977115 9.76e-02 80 chr12:102249412-10224949 2.77e-03 69_[+4(4.10e-05)]_3 chr16:84681821-84681901 2.92e-01 80 chr1:26201729-26201809 2.28e-01 80 chr5:132126300-132126380 5.63e-03 29_[+4(5.63e-06)]_43 chr11:67080190-67080270 9.86e-03 37_[+3(4.74e-05)]_15_[+3(1.50e-05)]_\ 12 chr1:153539118-153539198 3.87e-01 80 chr11:67250534-67250614 7.79e-01 80 chr17:55063233-55063313 1.73e-02 43_[+2(2.82e-05)]_29 chr19:59070069-59070149 9.40e-01 80 chr4:145058863-145058943 1.32e-03 2_[+4(1.36e-05)]_15_[+2(5.22e-05)]_\ [+2(1.67e-05)]_28_[+4(8.02e-05)]_3 chr19:49654024-49654104 6.30e-01 80 chr1:54841577-54841657 7.23e-02 55_[+3(1.50e-05)]_17 chr11:5186217-5186297 9.31e-01 80 chr17:40828679-40828759 5.05e-01 80 chr6:143381599-143381679 8.90e-01 80 chr12:1714388-1714468 2.49e-04 9_[+1(1.41e-05)]_12_[+5(3.79e-05)]_\ 15_[+1(6.46e-05)]_10_[+1(2.85e-05)]_2 chr7:76009541-76009621 3.44e-01 80 chr5:149267528-149267608 7.21e-06 3_[+1(1.41e-05)]_[+1(1.41e-05)]_61 chr1:27853993-27854073 6.29e-01 80 chr2:201374943-201375023 8.78e-02 80 chr22:19702371-19702451 7.70e-01 80 chr1:36621347-36621427 3.63e-01 80 chr10:74051009-74051089 7.79e-01 80 chr1:43432901-43432981 9.40e-01 80 chr6:42939012-42939092 1.52e-02 43_[+5(8.40e-05)]_29 chr4:83822069-83822149 5.88e-02 67_[+1(8.50e-05)]_5 chr7:142654358-142654438 1.58e-01 80 chr1:12570572-12570652 6.42e-06 7_[+1(1.41e-05)]_[+1(1.41e-05)]_\ [+1(1.41e-05)]_25_[+3(1.50e-05)]_16 chr10:79669655-79669735 2.89e-02 80 chr9:116647014-116647094 1.46e-02 80 chr1:156833068-156833148 5.78e-05 22_[+4(2.57e-05)]_5_[+2(2.82e-05)]_\ 37 chr19:13094594-13094674 7.93e-02 80 chr19:56904552-56904632 3.31e-01 80 chr8:66655622-66655702 4.98e-01 80 chr19:10534934-10535014 1.04e-01 32_[+2(5.22e-05)]_40 chr19:10410704-10410784 2.50e-01 80 chr9:99445936-99446016 1.73e-01 80 chr11:10921145-10921225 8.51e-01 80 chr1:27754973-27755053 2.26e-02 26_[+2(9.20e-05)]_46 chr7:105753104-105753184 7.25e-01 80 chr1:90372319-90372399 7.24e-01 80 chr6:138187427-138187507 9.15e-03 18_[+2(5.22e-05)]_54 chr22:22378226-22378306 7.23e-01 80 chr6:43806514-43806594 7.18e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n08.farnam.hpc.yale.internal ********************************************************************************