******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/GATA2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr1:8075200-8075280 1.0000 80 chr1:246660752-246660832 1.0000 80 chr1:84744717-84744797 1.0000 80 chr1:48387803-48387883 1.0000 80 chr9:100043246-100043326 1.0000 80 chr11:36586735-36586815 1.0000 80 chr6:85377403-85377483 1.0000 80 chr6:13909344-13909424 1.0000 80 chr11:43715490-43715570 1.0000 80 chr11:56918038-56918118 1.0000 80 chr3:15727527-15727607 1.0000 80 chr1:236714858-236714938 1.0000 80 chr1:233926994-233927074 1.0000 80 chr12:104503047-10450312 1.0000 80 chr3:3238235-3238315 1.0000 80 chr6:36255564-36255644 1.0000 80 chr22:22302156-22302236 1.0000 80 chr3:20501034-20501114 1.0000 80 chr8:10874494-10874574 1.0000 80 chr6:14449823-14449903 1.0000 80 chr9:96974545-96974625 1.0000 80 chr6:16109367-16109447 1.0000 80 chr8:125647799-125647879 1.0000 80 chr11:47938063-47938143 1.0000 80 chr6:88881193-88881273 1.0000 80 chr22:21221977-21222057 1.0000 80 chr7:91184359-91184439 1.0000 80 chr7:127005393-127005473 1.0000 80 chr6:126375599-126375679 1.0000 80 chr22:22231204-22231284 1.0000 80 chr5:36111478-36111558 1.0000 80 chr4:55252632-55252712 1.0000 80 chr1:15143880-15143960 1.0000 80 chr17:48891143-48891223 1.0000 80 chr14:25454283-25454363 1.0000 80 chr3:47159499-47159579 1.0000 80 chr21:35459382-35459462 1.0000 80 chr16:81848530-81848610 1.0000 80 chr6:29458524-29458604 1.0000 80 chr7:112038702-112038782 1.0000 80 chr7:37397319-37397399 1.0000 80 chr6:159425719-159425799 1.0000 80 chr3:178865127-178865207 1.0000 80 chr6:10314636-10314716 1.0000 80 chr15:70755399-70755479 1.0000 80 chr11:46269290-46269370 1.0000 80 chr2:42423662-42423742 1.0000 80 chr1:32593511-32593591 1.0000 80 chr4:25724767-25724847 1.0000 80 chr4:178958727-178958807 1.0000 80 chr7:26728925-26729005 1.0000 80 chr2:160008768-160008848 1.0000 80 chr20:30261828-30261908 1.0000 80 chr5:172411416-172411496 1.0000 80 chr1:167218425-167218505 1.0000 80 chr17:27239500-27239580 1.0000 80 chr8:42749465-42749545 1.0000 80 chr11:58513483-58513563 1.0000 80 chr4:10347151-10347231 1.0000 80 chr7:137671216-137671296 1.0000 80 chr6:25974302-25974382 1.0000 80 chr3:36948122-36948202 1.0000 80 chr16:71464773-71464853 1.0000 80 chr6:30847596-30847676 1.0000 80 chr1:12243690-12243770 1.0000 80 chrX:117405832-117405912 1.0000 80 chr6:135395261-135395341 1.0000 80 chrX:133392362-133392442 1.0000 80 chr2:74311111-74311191 1.0000 80 chr22:21138647-21138727 1.0000 80 chr19:35657685-35657765 1.0000 80 chr16:85089133-85089213 1.0000 80 chr2:112784279-112784359 1.0000 80 chr1:203238289-203238369 1.0000 80 chr17:53421941-53422021 1.0000 80 chr6:11393352-11393432 1.0000 80 chr1:62247002-62247082 1.0000 80 chr11:78426923-78427003 1.0000 80 chr16:22227765-22227845 1.0000 80 chr17:76955011-76955091 1.0000 80 chr15:96241588-96241668 1.0000 80 chr2:102918519-102918599 1.0000 80 chr1:205680348-205680428 1.0000 80 chr18:52830918-52830998 1.0000 80 chr17:39686602-39686682 1.0000 80 chr12:94316415-94316495 1.0000 80 chr7:134519733-134519813 1.0000 80 chr2:145648650-145648730 1.0000 80 chr1:175703059-175703139 1.0000 80 chr12:51789586-51789666 1.0000 80 chr1:16477988-16478068 1.0000 80 chr1:40167634-40167714 1.0000 80 chr1:20525617-20525697 1.0000 80 chr6:139866861-139866941 1.0000 80 chr22:20239295-20239375 1.0000 80 chr7:120687173-120687253 1.0000 80 chr2:28767704-28767784 1.0000 80 chr22:20239502-20239582 1.0000 80 chr2:74263747-74263827 1.0000 80 chr2:218083660-218083740 1.0000 80 chr11:9673941-9674021 1.0000 80 chr2:75089606-75089686 1.0000 80 chr2:43405287-43405367 1.0000 80 chr12:54342759-54342839 1.0000 80 chr1:186164629-186164709 1.0000 80 chr9:132641543-132641623 1.0000 80 chr3:4729059-4729139 1.0000 80 chr7:115858326-115858406 1.0000 80 chr3:37011477-37011557 1.0000 80 chr16:55469453-55469533 1.0000 80 chr7:7140170-7140250 1.0000 80 chr1:52762033-52762113 1.0000 80 chr21:15954430-15954510 1.0000 80 chr17:43980353-43980433 1.0000 80 chr6:136652789-136652869 1.0000 80 chr11:67080227-67080307 1.0000 80 chr10:73740159-73740239 1.0000 80 chr2:28148821-28148901 1.0000 80 chr15:69026829-69026909 1.0000 80 chr7:106319883-106319963 1.0000 80 chr7:116058197-116058277 1.0000 80 chr19:3374479-3374559 1.0000 80 chr20:35783231-35783311 1.0000 80 chr11:75117444-75117524 1.0000 80 chr16:68098926-68099006 1.0000 80 chr20:39890753-39890833 1.0000 80 chr6:7199192-7199272 1.0000 80 chr22:21132174-21132254 1.0000 80 chr10:82422405-82422485 1.0000 80 chr6:24755650-24755730 1.0000 80 chr22:49893756-49893836 1.0000 80 chr1:86901161-86901241 1.0000 80 chr6:119578359-119578439 1.0000 80 chr3:14246609-14246689 1.0000 80 chr8:97842285-97842365 1.0000 80 chr6:26328058-26328138 1.0000 80 chr5:43274695-43274775 1.0000 80 chr8:106334305-106334385 1.0000 80 chrX:2826292-2826372 1.0000 80 chr12:117109951-11711003 1.0000 80 chr6:11964507-11964587 1.0000 80 chr16:80046589-80046669 1.0000 80 chr1:35965565-35965645 1.0000 80 chr1:184951357-184951437 1.0000 80 chr7:129063689-129063769 1.0000 80 chr1:20301491-20301571 1.0000 80 chr17:31187223-31187303 1.0000 80 chr22:22146167-22146247 1.0000 80 chr9:111666075-111666155 1.0000 80 chr5:118604948-118605028 1.0000 80 chr5:142504338-142504418 1.0000 80 chr20:49990620-49990700 1.0000 80 chr3:9954144-9954224 1.0000 80 chr6:107277437-107277517 1.0000 80 chr9:117001334-117001414 1.0000 80 chr10:74050948-74051028 1.0000 80 chr6:26332206-26332286 1.0000 80 chr3:186928895-186928975 1.0000 80 chr1:23866475-23866555 1.0000 80 chr18:71909945-71910025 1.0000 80 chr2:156988811-156988891 1.0000 80 chr4:48856062-48856142 1.0000 80 chr7:91262564-91262644 1.0000 80 chr3:148803675-148803755 1.0000 80 chr8:42426775-42426855 1.0000 80 chrX:153389567-153389647 1.0000 80 chr5:111546305-111546385 1.0000 80 chr4:84285659-84285739 1.0000 80 chr1:113689573-113689653 1.0000 80 chr1:168250989-168251069 1.0000 80 chr12:120030247-12003032 1.0000 80 chr6:134516840-134516920 1.0000 80 chr14:31291380-31291460 1.0000 80 chr7:98685298-98685378 1.0000 80 chr12:92773070-92773150 1.0000 80 chr3:193628935-193629015 1.0000 80 chr8:87522876-87522956 1.0000 80 chr1:41440756-41440836 1.0000 80 chr1:18756367-18756447 1.0000 80 chr6:147219358-147219438 1.0000 80 chr4:170534489-170534569 1.0000 80 chr11:3853165-3853245 1.0000 80 chr11:3684243-3684323 1.0000 80 chr10:11645149-11645229 1.0000 80 chr17:41400643-41400723 1.0000 80 chr15:67471303-67471383 1.0000 80 chr1:30601957-30602037 1.0000 80 chr7:135718328-135718408 1.0000 80 chr6:50927053-50927133 1.0000 80 chr7:77464010-77464090 1.0000 80 chr2:230605057-230605137 1.0000 80 chr17:61458586-61458666 1.0000 80 chr12:65114809-65114889 1.0000 80 chr12:122326178-12232625 1.0000 80 chr6:7026338-7026418 1.0000 80 chr5:111885586-111885666 1.0000 80 chr3:182502461-182502541 1.0000 80 chr1:190729173-190729253 1.0000 80 chr22:21997570-21997650 1.0000 80 chr2:172104853-172104933 1.0000 80 chr6:147481195-147481275 1.0000 80 chr6:159184014-159184094 1.0000 80 chr3:141765355-141765435 1.0000 80 chr1:22076522-22076602 1.0000 80 chr4:80599792-80599872 1.0000 80 chr3:4867492-4867572 1.0000 80 chr12:89934443-89934523 1.0000 80 chr1:204386679-204386759 1.0000 80 chr11:123985720-12398580 1.0000 80 chr16:80004735-80004815 1.0000 80 chr15:45341116-45341196 1.0000 80 chr3:37812805-37812885 1.0000 80 chr6:80177588-80177668 1.0000 80 chr18:967167-967247 1.0000 80 chr6:126433568-126433648 1.0000 80 chr6:67894403-67894483 1.0000 80 chr11:95276149-95276229 1.0000 80 chr4:155635626-155635706 1.0000 80 chr19:39892115-39892195 1.0000 80 chr1:212101793-212101873 1.0000 80 chr7:66334732-66334812 1.0000 80 chr5:95054042-95054122 1.0000 80 chr7:66387281-66387361 1.0000 80 chr1:203275537-203275617 1.0000 80 chr19:14253611-14253691 1.0000 80 chr20:30873661-30873741 1.0000 80 chr7:43790231-43790311 1.0000 80 chr7:12732575-12732655 1.0000 80 chr9:130677301-130677381 1.0000 80 chr1:1814997-1815077 1.0000 80 chr3:154848996-154849076 1.0000 80 chr10:62022634-62022714 1.0000 80 chrX:130086455-130086535 1.0000 80 chr1:53079860-53079940 1.0000 80 chr6:135302123-135302203 1.0000 80 chr22:21211761-21211841 1.0000 80 chr22:21340776-21340856 1.0000 80 chr8:74224732-74224812 1.0000 80 chr6:169854790-169854870 1.0000 80 chr16:20837524-20837604 1.0000 80 chr1:45501496-45501576 1.0000 80 chr1:92912231-92912311 1.0000 80 chr4:77011566-77011646 1.0000 80 chr12:89787595-89787675 1.0000 80 chr6:139818573-139818653 1.0000 80 chr6:136547922-136548002 1.0000 80 chr3:128134963-128135043 1.0000 80 chr6:15622187-15622267 1.0000 80 chr3:156178150-156178230 1.0000 80 chr10:82138113-82138193 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_GATA2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/GATA2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.284 C 0.225 G 0.216 T 0.275 Background letter frequencies (from file dataset with add-one prior applied): A 0.284 C 0.225 G 0.216 T 0.275 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF VAGATAAG MEME-1 width = 8 sites = 115 llr = 831 E-value = 2.2e-052 ******************************************************************************** -------------------------------------------------------------------------------- Motif VAGATAAG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 37:a:a92 pos.-specific C 3::::::2 probability G 3:a:::15 matrix T 13::a::1 bits 2.2 * 2.0 * 1.8 **** 1.5 **** Relative 1.3 ***** Entropy 1.1 ****** (10.4 bits) 0.9 ****** 0.7 ****** 0.4 ****** 0.2 ******** 0.0 -------- Multilevel CAGATAAG consensus GT sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VAGATAAG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:37812805-37812885 46 1.80e-05 TCTGTGTGAT GAGATAAG GTAGTCCCCT chr11:123985720-12398580 67 1.80e-05 ACTCACATTA GAGATAAG GTGTCA chr17:61458586-61458666 67 1.80e-05 ATGGTTGCCT GAGATAAG ACTGGC chr10:11645149-11645229 38 1.80e-05 AATGAGGCAT GAGATAAG AATGAGGTCA chr14:31291380-31291460 17 1.80e-05 tctgttccca gagataag attccctagc chr12:120030247-12003032 10 1.80e-05 atggctcaT GAGATAAG TGAGAATCTC chr16:55469453-55469533 24 1.80e-05 CTGCCTACAG GAGATAAG AGGCTGGTGT chr9:132641543-132641623 52 1.80e-05 GCTGCCAGCA GAGATAAG GGCATGGGCC chr2:74263747-74263827 58 1.80e-05 gtgattaaat gagataag tgaatgtgcg chr2:28767704-28767784 22 1.80e-05 AAGAGATACG GAGATAAG GCTCCCAGCG chr1:175703059-175703139 43 1.80e-05 CAACTTCATG GAGATAAG AGCTATCTTA chr22:21138647-21138727 48 1.80e-05 TTTGTTGCTT GAGATAAG AGATGATTAG chr2:160008768-160008848 42 1.80e-05 TATTTATTCT GAGATAAG CAGATGACTT chr5:95054042-95054122 31 3.68e-05 agcctgaaat cagataag gcattcttat chr19:39892115-39892195 27 3.68e-05 ACCACTTTAC CAGATAAG CTATCTCTCA chr4:155635626-155635706 14 3.68e-05 ATAAGAAAAC CAGATAAG CAGAAGCTGA chr1:41440756-41440836 48 3.68e-05 atggaggaga cagataag tgaacaggca chr3:148803675-148803755 53 3.68e-05 tctgtgcata cagataag ctgtgagcca chr3:14246609-14246689 42 3.68e-05 GGAGATAAAG CAGATAAG CAAAATCTCC chr2:43405287-43405367 3 3.68e-05 GG CAGATAAG TCTTGATCGA chr16:22227765-22227845 13 3.68e-05 GGTTGATAAG CAGATAAG TAGCTCTTCT chr1:45501496-45501576 7 6.05e-05 TGGAGG AAGATAAG CCAGCCAGTT chr8:74224732-74224812 67 6.05e-05 GATTCTGATA AAGATAAG TTAACT chr1:190729173-190729253 24 6.05e-05 cctgagtctt aagataag tctggcagtt chr1:30601957-30602037 5 6.05e-05 AACG AAGATAAG GGAAAGCTTA chr7:127005393-127005473 38 6.05e-05 GACTAATGAT AAGATAAG CCTGAAGATA chr9:130677301-130677381 12 9.68e-05 TAAGGCCCCG gagataac actgttatca chr6:159184014-159184094 35 9.68e-05 gggttaaaag gagataac gtgtatctgc chr2:230605057-230605137 33 9.68e-05 CCCATGAAAT GAGATAAC CATCTTTAGA chr6:26332206-26332286 36 9.68e-05 TCTTTTCTGA GAGATAAC GGCGCCTCCC chr20:49990620-49990700 21 9.68e-05 cagtgaaatg gagataac aagagccctt chr17:31187223-31187303 70 9.68e-05 cttgttgtgt gagataac atg chr8:97842285-97842365 66 9.68e-05 AGAAGATTAT GTGATAAG AGTAGAA chr11:75117444-75117524 60 9.68e-05 CCTGGCTGAT GAGATAAC CCTGGCTCCA chr12:51789586-51789666 55 9.68e-05 aagctcaagt gagataac acatgaaagt chr1:32593511-32593591 35 9.68e-05 TTTGAGATTG GAGATAAC CATTTGGTTA chr6:10314636-10314716 23 9.68e-05 GGGACCAGCA GAGATAAC GTTTCACAGG chr6:36255564-36255644 34 9.68e-05 AGAAGATGCA GAGATAAC AGTATCCTTT chr16:20837524-20837604 49 1.34e-04 GCTTTGCTTT CTGATAAG ACCTCATCTG chr6:135302123-135302203 12 1.34e-04 CCTGGGGCTT CTGATAAG ACTTACACTG chr19:14253611-14253691 43 1.34e-04 tacagctgtg ctgataag gtaaccacta chr9:117001334-117001414 37 1.34e-04 AAGGGGGAAG CTGATAAG CGCGGAAGCT chr11:78426923-78427003 67 1.34e-04 ATGACTACCA CTGATAAG AATGCA chr6:25974302-25974382 60 1.34e-04 tgcttagggt ctgataag gctgcagtta chr11:58513483-58513563 28 1.34e-04 ACAGATGGGT CAGATAAC TCTTTTGCAT chr7:26728925-26729005 20 1.34e-04 GTGTAAAGTC CTGATAAG AAGGCAGTCT chr8:10874494-10874574 8 1.34e-04 agataga ctgataag atgaaagatg chr11:43715490-43715570 62 1.34e-04 GATCTCCTTA CAGATAAC GTGAAAACAA chr7:66334732-66334812 55 1.58e-04 ctgaccactt gagataaa aagataaata chr18:71909945-71910025 21 1.58e-04 CAGATCAGCA GAGATAAA GAGGAACTGA chr7:7140170-7140250 8 1.58e-04 AGGGTTA GAGATAAA CAGCAGACTC chr9:100043246-100043326 55 1.58e-04 TCCACTTTCA GAGATAAA CGCGATTAGG chr6:147219358-147219438 30 1.83e-04 aagtgggttt cagataaa gggaggcacc chr3:193628935-193629015 70 1.83e-04 GTTTGATAAA CAGATaaa gtt chr8:42426775-42426855 22 1.83e-04 TGGCTAATCA CAGATAAA CTTTACACCC chr1:62247002-62247082 34 1.83e-04 CAGCTGATGG CAGATAAA ATCTCTTCAG chr3:4867492-4867572 69 2.06e-04 AGATCATGAT TAGATAAG AGTA chr12:117109951-11711003 72 2.06e-04 agatgattga tagataag a chr22:49893756-49893836 4 2.06e-04 aca tagataag atggcataga chr3:3238235-3238315 23 2.06e-04 GTTGATTGCT TAGATAAG AATCAGTTCT chr1:48387803-48387883 31 2.06e-04 TCTGGTTCCC TAGATAAG CAGCAGTGTG chr3:128134963-128135043 11 2.53e-04 CCAGGCCCCG ATGATAAG ACAGACAAGC chr6:136547922-136548002 50 2.53e-04 ctgtagaatg aagataac aatagcctgc chr1:53079860-53079940 70 2.53e-04 ctggagccac atgataag gag chr7:12732575-12732655 38 2.53e-04 ATTTGATCGA ATGATAAG ATCAAATTTG chr1:212101793-212101873 45 2.53e-04 CACACAGAGG ATGATAAG TGAATTCACT chr3:141765355-141765435 8 2.53e-04 AGAGGTA ATGATAAG AGAGATGGGA chr5:111546305-111546385 42 2.53e-04 GATCGAAATA AAGATAAC TGAAGGGTCT chr17:53421941-53422021 20 2.53e-04 AGAGGGTACA AAGATAAC AATCAGAACT chr3:36948122-36948202 35 2.53e-04 agagattgga atgataag ctttgaagat chr2:42423662-42423742 18 2.53e-04 CTGTGAGACT ATGATAAG AGTTCCGTCT chr11:36586735-36586815 11 2.53e-04 CTGCTGAATT ATGATAAG AGCTCAAAAT chr15:69026829-69026909 30 2.90e-04 TTATCTTGCA GAGATAAT AGTTCTGTCT chr1:40167634-40167714 43 2.90e-04 TGCAAGATCA GAGATAGG AGGTGCGGTG chr1:246660752-246660832 72 2.90e-04 ATCTGATTAA GAGATAAT G chr8:87522876-87522956 37 3.60e-04 gaagctatga cagataat aaatgattgt chr12:92773070-92773150 34 3.60e-04 CAGAGCACAC CAGATAGG AGGGCACTGT chr22:22146167-22146247 55 3.60e-04 aatggggcaa aagataaa aaatcggtga chr1:184951357-184951437 4 3.60e-04 CCA AAGATAAA CAGATTACAT chr4:10347151-10347231 44 3.60e-04 ATACAACGGA CAGATAAT AAAATACCTT chr7:37397319-37397399 55 3.60e-04 AGTTTGGTTT AAGATAAA ACACAGTCAG chr6:14449823-14449903 21 3.60e-04 ATCCTATGTT AAGATAAA GTGAGTCGGA chr3:20501034-20501114 72 3.60e-04 AAGGAAAGCA CAGATAAT G chr22:22302156-22302236 71 3.60e-04 TGGAAGCCTA AAGATAAA AA chr12:104503047-10450312 38 3.60e-04 CAGAGATCTG AAGATAAA ACTGCTTGAT chr1:233926994-233927074 72 3.60e-04 CACAGATGTT CAGATAAT G chr1:84744717-84744797 58 3.60e-04 CTAAGGATCT AAGATAAA TATTGCGCGA chr3:154848996-154849076 43 4.45e-04 gagcagacct aagataat cttgtgtagg chr15:67471303-67471383 5 4.45e-04 GATC AAGATAGG ACCAGGCTAT chr3:37011477-37011557 49 4.45e-04 ACTGATACCA AAGATAAT GCAGAGGCCT chr12:94316415-94316495 68 4.45e-04 TCTGGTATTA AAGATAGG GAGGC chr19:35657685-35657765 41 4.45e-04 tcttgatggg aagatagg caaagtcaca chr6:135395261-135395341 57 4.45e-04 GAAAACTAAT CTGATAAC AAAGACATGC chr1:15143880-15143960 14 4.45e-04 tgcagatacc aagataat caagacatag chr7:66387281-66387361 8 4.68e-04 TGAATAT GTGATAAA GTGGTTTGTC chr2:75089606-75089686 48 4.68e-04 AGCACATGAT GTGATAAA GGGAGACCGG chr12:65114809-65114889 49 4.92e-04 TGAGCATATG CTGATAAA CAGTAAGAAA chr7:91262564-91262644 36 4.92e-04 TGCACAAATG CTGATAAA CCTCCTTAAC chr2:156988811-156988891 5 5.38e-04 GAAT TTGATAAG TTAGAGCACC chr7:115858326-115858406 64 5.38e-04 CAGAAATGCC TTGATAAG GAGTCCATT chr7:120687173-120687253 49 5.38e-04 CACTTTTTGT TTGATAAG ATCTCCCTCA chrX:133392362-133392442 63 6.42e-04 ctgaggggat gtgataat ttattatctt chr8:106334305-106334385 19 7.24e-04 ATAAAAAGCC CTGATAGG ACGGGAGGTG chr1:203238289-203238369 49 7.24e-04 AAAACTGCAT CAGATAGC AGAGGAAACA chr22:21340776-21340856 7 7.61e-04 agatga cagataga tagatagtgg chr17:48891143-48891223 70 8.07e-04 attagataga tagataat aga chr16:68098926-68099006 15 8.73e-04 ATGAGGGAAG AAGATAGC AATGACACAG chr1:20525617-20525697 31 8.90e-04 ACAGTGGCAG GAGATAGT CCTTTTTATC chr11:9673941-9674021 48 9.32e-04 TTCCTGTTGC CAGATAGT GTCCACTGAT chr17:39686602-39686682 43 9.32e-04 GGAGATTGGC CAGATAGT TGCCATGCAC chr10:82138113-82138193 28 9.69e-04 CAGTATCAGA GAGATGAG GGACAGATAT chr12:122326178-12232625 27 9.83e-04 ccccatttta cagatgag gaaactgagg chr2:112784279-112784359 30 1.03e-03 TGTGCAAGTG TTGATAAA GGCTGGAAAG chr7:91184359-91184439 37 1.03e-03 TCCTAATGGC TTGATAAA TATTCCTGCC chr15:96241588-96241668 29 1.06e-03 CACGAGATTG CTGATAGC ATTTGTATCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VAGATAAG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:37812805-37812885 1.8e-05 45_[+1]_27 chr11:123985720-12398580 1.8e-05 66_[+1]_6 chr17:61458586-61458666 1.8e-05 66_[+1]_6 chr10:11645149-11645229 1.8e-05 37_[+1]_35 chr14:31291380-31291460 1.8e-05 16_[+1]_56 chr12:120030247-12003032 1.8e-05 9_[+1]_63 chr16:55469453-55469533 1.8e-05 23_[+1]_49 chr9:132641543-132641623 1.8e-05 51_[+1]_21 chr2:74263747-74263827 1.8e-05 57_[+1]_15 chr2:28767704-28767784 1.8e-05 21_[+1]_51 chr1:175703059-175703139 1.8e-05 42_[+1]_30 chr22:21138647-21138727 1.8e-05 47_[+1]_25 chr2:160008768-160008848 1.8e-05 41_[+1]_31 chr5:95054042-95054122 3.7e-05 30_[+1]_42 chr19:39892115-39892195 3.7e-05 26_[+1]_46 chr4:155635626-155635706 3.7e-05 13_[+1]_59 chr1:41440756-41440836 3.7e-05 47_[+1]_25 chr3:148803675-148803755 3.7e-05 52_[+1]_20 chr3:14246609-14246689 3.7e-05 41_[+1]_31 chr2:43405287-43405367 3.7e-05 2_[+1]_70 chr16:22227765-22227845 3.7e-05 12_[+1]_60 chr1:45501496-45501576 6.1e-05 6_[+1]_66 chr8:74224732-74224812 6.1e-05 66_[+1]_6 chr1:190729173-190729253 6.1e-05 23_[+1]_49 chr1:30601957-30602037 6.1e-05 4_[+1]_68 chr7:127005393-127005473 6.1e-05 37_[+1]_35 chr9:130677301-130677381 9.7e-05 11_[+1]_61 chr6:159184014-159184094 9.7e-05 34_[+1]_38 chr2:230605057-230605137 9.7e-05 32_[+1]_40 chr6:26332206-26332286 9.7e-05 35_[+1]_37 chr20:49990620-49990700 9.7e-05 20_[+1]_52 chr17:31187223-31187303 9.7e-05 69_[+1]_3 chr8:97842285-97842365 9.7e-05 65_[+1]_7 chr11:75117444-75117524 9.7e-05 59_[+1]_13 chr12:51789586-51789666 9.7e-05 54_[+1]_18 chr1:32593511-32593591 9.7e-05 34_[+1]_38 chr6:10314636-10314716 9.7e-05 22_[+1]_50 chr6:36255564-36255644 9.7e-05 33_[+1]_39 chr16:20837524-20837604 0.00013 48_[+1]_24 chr6:135302123-135302203 0.00013 11_[+1]_61 chr19:14253611-14253691 0.00013 42_[+1]_30 chr9:117001334-117001414 0.00013 36_[+1]_36 chr11:78426923-78427003 0.00013 66_[+1]_6 chr6:25974302-25974382 0.00013 59_[+1]_13 chr11:58513483-58513563 0.00013 27_[+1]_45 chr7:26728925-26729005 0.00013 19_[+1]_53 chr8:10874494-10874574 0.00013 7_[+1]_65 chr11:43715490-43715570 0.00013 61_[+1]_11 chr7:66334732-66334812 0.00016 54_[+1]_18 chr18:71909945-71910025 0.00016 20_[+1]_52 chr7:7140170-7140250 0.00016 7_[+1]_65 chr9:100043246-100043326 0.00016 54_[+1]_18 chr6:147219358-147219438 0.00018 29_[+1]_43 chr3:193628935-193629015 0.00018 69_[+1]_3 chr8:42426775-42426855 0.00018 21_[+1]_51 chr1:62247002-62247082 0.00018 33_[+1]_39 chr3:4867492-4867572 0.00021 68_[+1]_4 chr12:117109951-11711003 0.00021 71_[+1]_1 chr22:49893756-49893836 0.00021 3_[+1]_69 chr3:3238235-3238315 0.00021 22_[+1]_50 chr1:48387803-48387883 0.00021 30_[+1]_42 chr3:128134963-128135043 0.00025 10_[+1]_62 chr6:136547922-136548002 0.00025 49_[+1]_23 chr1:53079860-53079940 0.00025 69_[+1]_3 chr7:12732575-12732655 0.00025 37_[+1]_35 chr1:212101793-212101873 0.00025 44_[+1]_28 chr3:141765355-141765435 0.00025 7_[+1]_65 chr5:111546305-111546385 0.00025 41_[+1]_31 chr17:53421941-53422021 0.00025 19_[+1]_53 chr3:36948122-36948202 0.00025 34_[+1]_38 chr2:42423662-42423742 0.00025 17_[+1]_55 chr11:36586735-36586815 0.00025 10_[+1]_62 chr15:69026829-69026909 0.00029 29_[+1]_43 chr1:40167634-40167714 0.00029 42_[+1]_30 chr1:246660752-246660832 0.00029 71_[+1]_1 chr8:87522876-87522956 0.00036 36_[+1]_36 chr12:92773070-92773150 0.00036 33_[+1]_39 chr22:22146167-22146247 0.00036 54_[+1]_18 chr1:184951357-184951437 0.00036 3_[+1]_69 chr4:10347151-10347231 0.00036 43_[+1]_29 chr7:37397319-37397399 0.00036 54_[+1]_18 chr6:14449823-14449903 0.00036 20_[+1]_52 chr3:20501034-20501114 0.00036 71_[+1]_1 chr22:22302156-22302236 0.00036 70_[+1]_2 chr12:104503047-10450312 0.00036 37_[+1]_35 chr1:233926994-233927074 0.00036 71_[+1]_1 chr1:84744717-84744797 0.00036 57_[+1]_15 chr3:154848996-154849076 0.00044 42_[+1]_30 chr15:67471303-67471383 0.00044 4_[+1]_68 chr3:37011477-37011557 0.00044 48_[+1]_24 chr12:94316415-94316495 0.00044 67_[+1]_5 chr19:35657685-35657765 0.00044 40_[+1]_32 chr6:135395261-135395341 0.00044 56_[+1]_16 chr1:15143880-15143960 0.00044 13_[+1]_59 chr7:66387281-66387361 0.00047 7_[+1]_65 chr2:75089606-75089686 0.00047 47_[+1]_25 chr12:65114809-65114889 0.00049 48_[+1]_24 chr7:91262564-91262644 0.00049 35_[+1]_37 chr2:156988811-156988891 0.00054 4_[+1]_68 chr7:115858326-115858406 0.00054 63_[+1]_9 chr7:120687173-120687253 0.00054 48_[+1]_24 chrX:133392362-133392442 0.00064 62_[+1]_10 chr8:106334305-106334385 0.00072 18_[+1]_54 chr1:203238289-203238369 0.00072 48_[+1]_24 chr22:21340776-21340856 0.00076 6_[+1]_66 chr17:48891143-48891223 0.00081 69_[+1]_3 chr16:68098926-68099006 0.00087 14_[+1]_58 chr1:20525617-20525697 0.00089 30_[+1]_42 chr11:9673941-9674021 0.00093 47_[+1]_25 chr17:39686602-39686682 0.00093 42_[+1]_30 chr10:82138113-82138193 0.00097 27_[+1]_45 chr12:122326178-12232625 0.00098 26_[+1]_46 chr2:112784279-112784359 0.001 29_[+1]_43 chr7:91184359-91184439 0.001 36_[+1]_36 chr15:96241588-96241668 0.0011 28_[+1]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VAGATAAG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF VAGATAAG width=8 seqs=115 chr3:37812805-37812885 ( 46) GAGATAAG 1 chr11:123985720-12398580 ( 67) GAGATAAG 1 chr17:61458586-61458666 ( 67) GAGATAAG 1 chr10:11645149-11645229 ( 38) GAGATAAG 1 chr14:31291380-31291460 ( 17) GAGATAAG 1 chr12:120030247-12003032 ( 10) GAGATAAG 1 chr16:55469453-55469533 ( 24) GAGATAAG 1 chr9:132641543-132641623 ( 52) GAGATAAG 1 chr2:74263747-74263827 ( 58) GAGATAAG 1 chr2:28767704-28767784 ( 22) GAGATAAG 1 chr1:175703059-175703139 ( 43) GAGATAAG 1 chr22:21138647-21138727 ( 48) GAGATAAG 1 chr2:160008768-160008848 ( 42) GAGATAAG 1 chr5:95054042-95054122 ( 31) CAGATAAG 1 chr19:39892115-39892195 ( 27) CAGATAAG 1 chr4:155635626-155635706 ( 14) CAGATAAG 1 chr1:41440756-41440836 ( 48) CAGATAAG 1 chr3:148803675-148803755 ( 53) CAGATAAG 1 chr3:14246609-14246689 ( 42) CAGATAAG 1 chr2:43405287-43405367 ( 3) CAGATAAG 1 chr16:22227765-22227845 ( 13) CAGATAAG 1 chr1:45501496-45501576 ( 7) AAGATAAG 1 chr8:74224732-74224812 ( 67) AAGATAAG 1 chr1:190729173-190729253 ( 24) AAGATAAG 1 chr1:30601957-30602037 ( 5) AAGATAAG 1 chr7:127005393-127005473 ( 38) AAGATAAG 1 chr9:130677301-130677381 ( 12) GAGATAAC 1 chr6:159184014-159184094 ( 35) GAGATAAC 1 chr2:230605057-230605137 ( 33) GAGATAAC 1 chr6:26332206-26332286 ( 36) GAGATAAC 1 chr20:49990620-49990700 ( 21) GAGATAAC 1 chr17:31187223-31187303 ( 70) GAGATAAC 1 chr8:97842285-97842365 ( 66) GTGATAAG 1 chr11:75117444-75117524 ( 60) GAGATAAC 1 chr12:51789586-51789666 ( 55) GAGATAAC 1 chr1:32593511-32593591 ( 35) GAGATAAC 1 chr6:10314636-10314716 ( 23) GAGATAAC 1 chr6:36255564-36255644 ( 34) GAGATAAC 1 chr16:20837524-20837604 ( 49) CTGATAAG 1 chr6:135302123-135302203 ( 12) CTGATAAG 1 chr19:14253611-14253691 ( 43) CTGATAAG 1 chr9:117001334-117001414 ( 37) CTGATAAG 1 chr11:78426923-78427003 ( 67) CTGATAAG 1 chr6:25974302-25974382 ( 60) CTGATAAG 1 chr11:58513483-58513563 ( 28) CAGATAAC 1 chr7:26728925-26729005 ( 20) CTGATAAG 1 chr8:10874494-10874574 ( 8) CTGATAAG 1 chr11:43715490-43715570 ( 62) CAGATAAC 1 chr7:66334732-66334812 ( 55) GAGATAAA 1 chr18:71909945-71910025 ( 21) GAGATAAA 1 chr7:7140170-7140250 ( 8) GAGATAAA 1 chr9:100043246-100043326 ( 55) GAGATAAA 1 chr6:147219358-147219438 ( 30) CAGATAAA 1 chr3:193628935-193629015 ( 70) CAGATAAA 1 chr8:42426775-42426855 ( 22) CAGATAAA 1 chr1:62247002-62247082 ( 34) CAGATAAA 1 chr3:4867492-4867572 ( 69) TAGATAAG 1 chr12:117109951-11711003 ( 72) TAGATAAG 1 chr22:49893756-49893836 ( 4) TAGATAAG 1 chr3:3238235-3238315 ( 23) TAGATAAG 1 chr1:48387803-48387883 ( 31) TAGATAAG 1 chr3:128134963-128135043 ( 11) ATGATAAG 1 chr6:136547922-136548002 ( 50) AAGATAAC 1 chr1:53079860-53079940 ( 70) ATGATAAG 1 chr7:12732575-12732655 ( 38) ATGATAAG 1 chr1:212101793-212101873 ( 45) ATGATAAG 1 chr3:141765355-141765435 ( 8) ATGATAAG 1 chr5:111546305-111546385 ( 42) AAGATAAC 1 chr17:53421941-53422021 ( 20) AAGATAAC 1 chr3:36948122-36948202 ( 35) ATGATAAG 1 chr2:42423662-42423742 ( 18) ATGATAAG 1 chr11:36586735-36586815 ( 11) ATGATAAG 1 chr15:69026829-69026909 ( 30) GAGATAAT 1 chr1:40167634-40167714 ( 43) GAGATAGG 1 chr1:246660752-246660832 ( 72) GAGATAAT 1 chr8:87522876-87522956 ( 37) CAGATAAT 1 chr12:92773070-92773150 ( 34) CAGATAGG 1 chr22:22146167-22146247 ( 55) AAGATAAA 1 chr1:184951357-184951437 ( 4) AAGATAAA 1 chr4:10347151-10347231 ( 44) CAGATAAT 1 chr7:37397319-37397399 ( 55) AAGATAAA 1 chr6:14449823-14449903 ( 21) AAGATAAA 1 chr3:20501034-20501114 ( 72) CAGATAAT 1 chr22:22302156-22302236 ( 71) AAGATAAA 1 chr12:104503047-10450312 ( 38) AAGATAAA 1 chr1:233926994-233927074 ( 72) CAGATAAT 1 chr1:84744717-84744797 ( 58) AAGATAAA 1 chr3:154848996-154849076 ( 43) AAGATAAT 1 chr15:67471303-67471383 ( 5) AAGATAGG 1 chr3:37011477-37011557 ( 49) AAGATAAT 1 chr12:94316415-94316495 ( 68) AAGATAGG 1 chr19:35657685-35657765 ( 41) AAGATAGG 1 chr6:135395261-135395341 ( 57) CTGATAAC 1 chr1:15143880-15143960 ( 14) AAGATAAT 1 chr7:66387281-66387361 ( 8) GTGATAAA 1 chr2:75089606-75089686 ( 48) GTGATAAA 1 chr12:65114809-65114889 ( 49) CTGATAAA 1 chr7:91262564-91262644 ( 36) CTGATAAA 1 chr2:156988811-156988891 ( 5) TTGATAAG 1 chr7:115858326-115858406 ( 64) TTGATAAG 1 chr7:120687173-120687253 ( 49) TTGATAAG 1 chrX:133392362-133392442 ( 63) GTGATAAT 1 chr8:106334305-106334385 ( 19) CTGATAGG 1 chr1:203238289-203238369 ( 49) CAGATAGC 1 chr22:21340776-21340856 ( 7) CAGATAGA 1 chr17:48891143-48891223 ( 70) TAGATAAT 1 chr16:68098926-68099006 ( 15) AAGATAGC 1 chr1:20525617-20525697 ( 31) GAGATAGT 1 chr11:9673941-9674021 ( 48) CAGATAGT 1 chr17:39686602-39686682 ( 43) CAGATAGT 1 chr10:82138113-82138193 ( 28) GAGATGAG 1 chr12:122326178-12232625 ( 27) CAGATGAG 1 chr2:112784279-112784359 ( 30) TTGATAAA 1 chr7:91184359-91184439 ( 37) TTGATAAA 1 chr15:96241588-96241668 ( 29) CTGATAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VAGATAAG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.99089 E= 2.2e-052 -12 52 58 -153 138 -1349 -1349 -8 -1349 -1349 221 -1349 182 -1349 -1349 -1349 -1349 -1349 -1349 186 179 -1349 -363 -1349 164 -1349 -93 -1349 -57 -37 125 -118 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VAGATAAG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 115 E= 2.2e-052 0.260870 0.321739 0.321739 0.095652 0.739130 0.000000 0.000000 0.260870 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.982609 0.000000 0.017391 0.000000 0.886957 0.000000 0.113043 0.000000 0.191304 0.173913 0.513043 0.121739 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VAGATAAG MEME-1 regular expression -------------------------------------------------------------------------------- [CGA][AT]GATAAG -------------------------------------------------------------------------------- Time 5.07 secs. ******************************************************************************** ******************************************************************************** MOTIF TSTTATCT MEME-2 width = 8 sites = 140 llr = 931 E-value = 6.8e-047 ******************************************************************************** -------------------------------------------------------------------------------- Motif TSTTATCT MEME-2 Description -------------------------------------------------------------------------------- Simplified A 11:1a::2 pos.-specific C 2521::a: probability G 13:::::: matrix T 5287:a:8 bits 2.2 * 2.0 * 1.8 *** 1.5 *** Relative 1.3 * *** Entropy 1.1 * **** (9.6 bits) 0.9 ****** 0.7 ****** 0.4 ******* 0.2 ******** 0.0 -------- Multilevel TCTTATCT consensus CG A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSTTATCT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:139818573-139818653 42 2.26e-05 gcacatgaac tcttatct cagggtacca chr22:21211761-21211841 29 2.26e-05 GTCACCACTG TCTTATCT TGTCGGAAAA chr12:92773070-92773150 2 2.26e-05 G TCTTATCT TTGTCTGACA chr1:113689573-113689653 9 2.26e-05 CAGGCCCC TCTTATCT CCTCCATCTG chr4:48856062-48856142 2 2.26e-05 A TCTTATCT CCAAAGGCAG chr1:23866475-23866555 52 2.26e-05 CTGCGAGGCG TCTTATCT TCTCATCAAG chr3:186928895-186928975 49 2.26e-05 TGTTTGACCC TCTTATCT GAAACCTTCA chr10:74050948-74051028 44 2.26e-05 GTGATCTTCC TCTTATCT CTCCCATCTG chrX:2826292-2826372 70 2.26e-05 caatcatgta tcttatct atc chr20:39890753-39890833 50 2.26e-05 tgttctcacc tcttatct ggacaactgc chr7:116058197-116058277 41 2.26e-05 GCAAAATAAG TCTTATCT CGCTTGGAAT chr12:51789586-51789666 1 2.26e-05 . tcttatct gtgaagtgca chr8:42749465-42749545 26 2.26e-05 AGGGCCAGCA TCTTATCT GCCCATCTAA chr11:56918038-56918118 56 2.26e-05 taaacagact tcttatct ggatgcgtgg chr7:12732575-12732655 9 4.43e-05 CTCAAGAT TGTTATCT ATAATTCACA chr1:212101793-212101873 11 4.43e-05 ATGCAGCTTC TGTTATCT GGAGATCTGT chr17:43980353-43980433 1 4.43e-05 . TGTTATCT TGGGATCTAA chr3:4729059-4729139 11 4.43e-05 tgtgcacttt tgttatct ccttttcacg chr2:145648650-145648730 14 4.43e-05 gtggtagctc tgttatct tgaatcttgg chr6:11393352-11393432 18 4.43e-05 ATTCCCACTG TGTTATCT CCCTGGCTGC chr4:25724767-25724847 72 4.43e-05 tctttttggg tgttatct c chr11:123985720-12398580 9 6.28e-05 CACTATCT CCTTATCT TTCCCCCTGC chr6:7026338-7026418 51 6.28e-05 aaggacggga ccttatct ggctttgcat chr6:26328058-26328138 21 6.28e-05 CCAAAGTAAA CCTTATCT CTGATCTTTT chr2:74263747-74263827 13 6.28e-05 tgtttagtgt ccttatct ctgatctcca chr16:71464773-71464853 13 6.28e-05 CAAGCCATTC CCTTATCT TCCCCCACCC chr4:10347151-10347231 58 6.28e-05 TAATAAAATA CCTTATCT ATTCAGTCAC chr5:142504338-142504418 44 8.06e-05 GATTGTTGAC CGTTATCT CTGCAGGGGA chr22:21132174-21132254 33 9.83e-05 TGTGCTAAAA GCTTATCT TGTTTACTTA chr15:69026829-69026909 73 9.83e-05 TCTACTGACA GCTTATCT chr10:73740159-73740239 68 9.83e-05 GAAAAAAAAA GCTTATCT TAACC chr7:115858326-115858406 7 9.83e-05 TGCATA GCTTATCT GAGCAGCGAG chr2:218083660-218083740 5 9.83e-05 ccaa gcttatct cagcttttaa chr6:169854790-169854870 49 1.22e-04 ATATGAATCA TCTTATCA CGCAAGCACC chr17:31187223-31187303 44 1.22e-04 ccagaacctc tcttatca ttagccttct chr7:91184359-91184439 4 1.22e-04 GCA TCTTATCA GCACGAAACA chr6:126433568-126433648 13 1.49e-04 TTGAATGCTG TTTTATCT CAAAAGGCAG chr17:61458586-61458666 31 1.49e-04 ATTAGCACAG TTTTATCT TATACTGATG chr4:170534489-170534569 23 1.49e-04 GGAGAGTTTG TTTTATCT CCTCTTCAAT chr6:134516840-134516920 2 1.49e-04 A TTTTATCT AAATGACTAG chr1:20525617-20525697 42 1.49e-04 AGATAGTCCT TTTTATCT ACAATAAACA chr1:12243690-12243770 12 1.49e-04 tatctagcta ttttatct attttatcta chr7:37397319-37397399 14 1.49e-04 TCCTTCTAGT TTTTATCT GAGCTGCCTC chr21:35459382-35459462 68 1.49e-04 CCACTGAGAT TTTTATCT GAATG chr12:89934443-89934523 52 2.08e-04 gaagggtggg acttatct ctctcttccc chr7:135718328-135718408 8 2.08e-04 TCACTCG TCTCATCT CCAGCTCCCA chr11:3684243-3684323 39 2.08e-04 tctcatctca tctcatct catctcatct chr3:148803675-148803755 30 2.08e-04 CTCTGCAAat acttatct gcacgtctgt chr1:62247002-62247082 69 2.08e-04 GCTATAACCA ACTTATCT CCTT chr1:32593511-32593591 48 2.08e-04 ATAACCATTT GGTTATCT GCAacacaca chr5:36111478-36111558 43 2.08e-04 AGGAAGTACC ACTTATCT CCCTTTCTAA chr8:125647799-125647879 52 2.08e-04 gcagctttca ggttatct cccatctgcc chr3:15727527-15727607 8 2.08e-04 CTTCCCC ACTTATCT TTGGCATCTA chr1:48387803-48387883 16 2.08e-04 ATCTACACTC TCTCATCT GGTTCCCTAG chr1:1814997-1815077 3 2.49e-04 tc tgttatca gtgcccacat chr9:130677301-130677381 22 2.49e-04 gagataacac tgttatca tccccacatt chr6:80177588-80177668 45 2.49e-04 AGCAGCTGAC TGTTATCA CCACATCACA chr4:80599792-80599872 59 2.49e-04 TATGACTCAA TGTTATCA TGAGGGAAAT chr10:82422405-82422485 25 2.49e-04 tctatatcta tcctatct atctatatct chr11:75117444-75117524 18 2.49e-04 CAGGGAAAGC TGTTATCA GGTGGCTGCT chr15:96241588-96241668 59 2.49e-04 CTTGTATCTG TGTTATCA GGCACACACA chr12:89787595-89787675 1 3.13e-04 . TCTAATCT GTTGCAAAAT chr4:84285659-84285739 7 3.13e-04 TCTATC TGTCATCT GTTGCCCTAA chr16:80046589-80046669 26 3.13e-04 ctctgagccc agttatct ctgcatcaAC chr6:11964507-11964587 39 3.13e-04 tatctatcta tctaatct atctattcca chr8:97842285-97842365 31 3.13e-04 CCATGGACCT AGTTATCT TGCATAGTGC chr16:68098926-68099006 41 3.13e-04 AGACATGCAG TGTCATCT ACACCTCTCT chr6:136652789-136652869 54 3.13e-04 ctatcatctg tctaatct atctaatcta chr2:43405287-43405367 37 3.13e-04 GTGATAAAGC AGTTATCT GTGTGTACAG chr7:134519733-134519813 65 3.13e-04 GGCCTCTGTA TCTAATCT ATGGGCTT chr3:47159499-47159579 1 3.13e-04 . TCTAATCT CCTACCTCTA chr6:85377403-85377483 14 3.13e-04 ctggtgagag tgtcatct agatggaaat chr1:8075200-8075280 13 3.13e-04 AGAAAAACAC AGTTATCT TCTGAATCTG chr7:98685298-98685378 54 3.50e-04 CCATCTTTTG TGCTATCT TTTAGGTcca chr11:67080227-67080307 36 3.50e-04 AGGAAGTCAG TGCTATCT CCCCATCTCC chr12:54342759-54342839 38 3.50e-04 CTGAGACTCC TGCTATCT TTCTCATAAT chrX:117405832-117405912 52 3.50e-04 TGGATGCCTG TGCTATCT TATGGCAGCT chr6:30847596-30847676 17 3.50e-04 accttacaga tgctatct cattatcttc chr3:178865127-178865207 15 3.50e-04 AGTACCGAAC CCTTATCA GTAGTAATCT chr6:16109367-16109447 41 3.50e-04 ggcctgagat tgctatct ttagaaaggc chr22:22302156-22302236 26 3.50e-04 AGAGGGCTGT CCTTATCA GGAATTGCTA chrX:153389567-153389647 18 3.72e-04 aggaagactg ctttatct ttctgttccc chr3:156178150-156178230 5 4.38e-04 ACCC TATTATCT GGCTATTCAG chr6:136547922-136548002 34 4.38e-04 atgcctagct cctcatct gtagaatgaa chr16:20837524-20837604 58 4.38e-04 TCTGATAAGA CCTCATCT GAAAATCTGC chr10:62022634-62022714 18 4.38e-04 GTCAAGGATT CCTCATCT CTTTCAAACA chr2:230605057-230605137 2 4.38e-04 G TATTATCT CTGAGAAACT chrX:133392362-133392442 72 4.38e-04 tgtgataatt tattatct t chr4:55252632-55252712 60 4.38e-04 CCAGAAGTCC TGTAATCT GCCTGGGCCT chr6:147219358-147219438 69 4.72e-04 cctcatgaac ccctatct gaga chr20:30261828-30261908 10 4.72e-04 acccaagat ccctatct aggaagtggc chr6:10314636-10314716 46 4.72e-04 ACAGGGGTTT CCCTATCT GGACCCTCCT chr1:15143880-15143960 52 4.72e-04 CCGCTCCCCT CCCTATCT AGCATAGCAG chr1:30601957-30602037 18 4.90e-04 ATAAGGGAAA GCTTATCA GGCAGCATTC chr3:37812805-37812885 31 5.45e-04 GTCAGTAATT GTTTATCT GTGTGATGAG chr1:18756367-18756447 54 5.45e-04 tgaagatgct cctaatct aacatcaaga chr7:91262564-91262644 72 5.45e-04 AGATCAGCAT GTTTATCT G chr2:74311111-74311191 6 5.45e-04 CTCAG CCTAATCT GCAGGAAGCC chr7:112038702-112038782 35 5.45e-04 tgcgggagat gtttatct atctggcttc chr8:42426775-42426855 59 6.03e-04 CAGTCAGGGC TTTTATCA GCAAATCTTT chr11:3853165-3853245 7 6.78e-04 AGAGGT GGTTATCA ACTAGCAATC chr5:118604948-118605028 48 6.78e-04 GCACTGCCCG GGTTATCA GGGTGCCCCA chr16:22227765-22227845 35 6.78e-04 TCTTCTGCTT ACTTATCA CTCATTCACA chr1:45501496-45501576 25 7.90e-04 CCAGCCAGTT ATTTATCT GTATGCTTCC chr6:88881193-88881273 65 7.90e-04 GAGAAGCCAC CATTATCT ACTCCCTG chr1:84744717-84744797 34 7.90e-04 GATAGCAAAT CATTATCT TACCGTCTAA chr4:77011566-77011646 49 9.78e-04 TGCCAGAGAT TCTAATCA GCTGTGAGTA chr1:20301491-20301571 68 9.78e-04 gcttttcatt tgtcatca ttcta chr1:35965565-35965645 26 9.78e-04 GGCAGCAGAT GGCTATCT GGGTGCTTGG chr22:21221977-21222057 21 9.78e-04 TTCTCTGTGC TCCCATCT AAACATCTAA chr6:13909344-13909424 47 9.78e-04 TGAGAACAGA TCCCATCT CTGGAGATTG chr12:122326178-12232625 2 1.03e-03 t tgctatca attactgccc chr8:106334305-106334385 58 1.03e-03 AGCCATATCA TGCTATCA GCCCATCTCC chr17:41400643-41400723 66 1.13e-03 aaggagtgcc agtcatct ccaatga chr3:9954144-9954224 57 1.13e-03 actaggagca ctttatca gactatcttc chr1:86901161-86901241 16 1.13e-03 ACCATATCTC AGTCATCT AGCAATCTAG chr16:80004735-80004815 19 1.25e-03 CACCAGTTGA TATTATCA CGCTAAGTAA chr1:22076522-22076602 65 1.25e-03 atgaccctga tgccatct caacctca chr15:67471303-67471383 45 1.25e-03 AGAATCGGGC TATTATCA TTGTTGTTAA chr1:41440756-41440836 27 1.25e-03 tcaaagagat tccaatct ggtatggagg chr3:14246609-14246689 64 1.25e-03 ATCTCCAAGC TATTATCA CACCATTGG chr22:20239502-20239582 63 1.25e-03 tcatcaccat cctcatca caatcactat chr22:20239295-20239375 72 1.25e-03 tcatcaccat cctcatca c chr1:175703059-175703139 51 1.25e-03 TGGAGATAAG AGCTATCT TATTTGGTCA chr18:52830918-52830998 47 1.25e-03 CTAGTGCCGC TGTAATCA GAAACCACCA chr16:81848530-81848610 68 1.25e-03 TTACTTTTAT TATTATCA GGACT chr1:168250989-168251069 30 1.29e-03 TTGCCTATCA CTTCATCT GCTTCCCCGT chr6:24755650-24755730 54 1.29e-03 tatcacattt cttcatct tgtctccaag chr2:172104853-172104933 1 1.38e-03 . agtaatct taatcaattg chr5:111885586-111885666 48 1.38e-03 GAGATACTGT AGTAATCT CCAAGAAAAC chr7:77464010-77464090 50 1.38e-03 tctagaaccc aattatct tgatgcttag chr3:182502461-182502541 72 1.49e-03 ATAGATGAGA TGCAATCT T chr18:71909945-71910025 39 1.49e-03 GAGGAACTGA GTTTATCA AACTCAGGTC chr20:49990620-49990700 5 1.49e-03 attt cctaatca gtgaaatgga chr7:26728925-26729005 68 1.49e-03 ATAATTGCTG GTTTATCA AAACT chr1:186164629-186164709 73 1.54e-03 GGAAACTCCT CTTAATCT chr4:178958727-178958807 26 1.54e-03 catactcctc cgctatca gtcctcacca chr2:42423662-42423742 57 1.54e-03 TCTGACTACA CTTAATCT GGCAGCTGGC chr14:25454283-25454363 42 1.61e-03 CTGGATATCT GTTCATCT TGTGTGTGCA chr11:43715490-43715570 18 1.61e-03 GTGTTCCAAT GCCTATCA CTGTCTGTCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSTTATCT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:139818573-139818653 2.3e-05 41_[+2]_31 chr22:21211761-21211841 2.3e-05 28_[+2]_44 chr12:92773070-92773150 2.3e-05 1_[+2]_71 chr1:113689573-113689653 2.3e-05 8_[+2]_64 chr4:48856062-48856142 2.3e-05 1_[+2]_71 chr1:23866475-23866555 2.3e-05 51_[+2]_21 chr3:186928895-186928975 2.3e-05 48_[+2]_24 chr10:74050948-74051028 2.3e-05 43_[+2]_29 chrX:2826292-2826372 2.3e-05 69_[+2]_3 chr20:39890753-39890833 2.3e-05 49_[+2]_23 chr7:116058197-116058277 2.3e-05 40_[+2]_32 chr12:51789586-51789666 2.3e-05 [+2]_72 chr8:42749465-42749545 2.3e-05 25_[+2]_47 chr11:56918038-56918118 2.3e-05 55_[+2]_17 chr7:12732575-12732655 4.4e-05 8_[+2]_64 chr1:212101793-212101873 4.4e-05 10_[+2]_62 chr17:43980353-43980433 4.4e-05 [+2]_72 chr3:4729059-4729139 4.4e-05 10_[+2]_62 chr2:145648650-145648730 4.4e-05 13_[+2]_59 chr6:11393352-11393432 4.4e-05 17_[+2]_55 chr4:25724767-25724847 4.4e-05 71_[+2]_1 chr11:123985720-12398580 6.3e-05 8_[+2]_64 chr6:7026338-7026418 6.3e-05 50_[+2]_22 chr6:26328058-26328138 6.3e-05 20_[+2]_52 chr2:74263747-74263827 6.3e-05 12_[+2]_60 chr16:71464773-71464853 6.3e-05 12_[+2]_60 chr4:10347151-10347231 6.3e-05 57_[+2]_15 chr5:142504338-142504418 8.1e-05 43_[+2]_29 chr22:21132174-21132254 9.8e-05 32_[+2]_40 chr15:69026829-69026909 9.8e-05 72_[+2] chr10:73740159-73740239 9.8e-05 67_[+2]_5 chr7:115858326-115858406 9.8e-05 6_[+2]_66 chr2:218083660-218083740 9.8e-05 4_[+2]_68 chr6:169854790-169854870 0.00012 48_[+2]_24 chr17:31187223-31187303 0.00012 43_[+2]_29 chr7:91184359-91184439 0.00012 3_[+2]_69 chr6:126433568-126433648 0.00015 12_[+2]_60 chr17:61458586-61458666 0.00015 30_[+2]_42 chr4:170534489-170534569 0.00015 22_[+2]_50 chr6:134516840-134516920 0.00015 1_[+2]_71 chr1:20525617-20525697 0.00015 41_[+2]_31 chr1:12243690-12243770 0.00015 11_[+2]_61 chr7:37397319-37397399 0.00015 13_[+2]_59 chr21:35459382-35459462 0.00015 67_[+2]_5 chr12:89934443-89934523 0.00021 51_[+2]_21 chr7:135718328-135718408 0.00021 7_[+2]_65 chr11:3684243-3684323 0.00021 38_[+2]_34 chr3:148803675-148803755 0.00021 29_[+2]_43 chr1:62247002-62247082 0.00021 68_[+2]_4 chr1:32593511-32593591 0.00021 47_[+2]_25 chr5:36111478-36111558 0.00021 42_[+2]_30 chr8:125647799-125647879 0.00021 51_[+2]_21 chr3:15727527-15727607 0.00021 7_[+2]_65 chr1:48387803-48387883 0.00021 15_[+2]_57 chr1:1814997-1815077 0.00025 2_[+2]_70 chr9:130677301-130677381 0.00025 21_[+2]_51 chr6:80177588-80177668 0.00025 44_[+2]_28 chr4:80599792-80599872 0.00025 58_[+2]_14 chr10:82422405-82422485 0.00025 24_[+2]_48 chr11:75117444-75117524 0.00025 17_[+2]_55 chr15:96241588-96241668 0.00025 58_[+2]_14 chr12:89787595-89787675 0.00031 [+2]_72 chr4:84285659-84285739 0.00031 6_[+2]_66 chr16:80046589-80046669 0.00031 25_[+2]_47 chr6:11964507-11964587 0.00031 38_[+2]_34 chr8:97842285-97842365 0.00031 30_[+2]_42 chr16:68098926-68099006 0.00031 40_[+2]_32 chr6:136652789-136652869 0.00031 53_[+2]_19 chr2:43405287-43405367 0.00031 36_[+2]_36 chr7:134519733-134519813 0.00031 64_[+2]_8 chr3:47159499-47159579 0.00031 [+2]_72 chr6:85377403-85377483 0.00031 13_[+2]_59 chr1:8075200-8075280 0.00031 12_[+2]_60 chr7:98685298-98685378 0.00035 53_[+2]_19 chr11:67080227-67080307 0.00035 35_[+2]_37 chr12:54342759-54342839 0.00035 37_[+2]_35 chrX:117405832-117405912 0.00035 51_[+2]_21 chr6:30847596-30847676 0.00035 16_[+2]_56 chr3:178865127-178865207 0.00035 14_[+2]_58 chr6:16109367-16109447 0.00035 40_[+2]_32 chr22:22302156-22302236 0.00035 25_[+2]_47 chrX:153389567-153389647 0.00037 17_[+2]_55 chr3:156178150-156178230 0.00044 4_[+2]_68 chr6:136547922-136548002 0.00044 33_[+2]_39 chr16:20837524-20837604 0.00044 57_[+2]_15 chr10:62022634-62022714 0.00044 17_[+2]_55 chr2:230605057-230605137 0.00044 1_[+2]_71 chrX:133392362-133392442 0.00044 71_[+2]_1 chr4:55252632-55252712 0.00044 59_[+2]_13 chr6:147219358-147219438 0.00047 68_[+2]_4 chr20:30261828-30261908 0.00047 9_[+2]_63 chr6:10314636-10314716 0.00047 45_[+2]_27 chr1:15143880-15143960 0.00047 51_[+2]_21 chr1:30601957-30602037 0.00049 17_[+2]_55 chr3:37812805-37812885 0.00055 30_[+2]_42 chr1:18756367-18756447 0.00055 53_[+2]_19 chr7:91262564-91262644 0.00055 71_[+2]_1 chr2:74311111-74311191 0.00055 5_[+2]_67 chr7:112038702-112038782 0.00055 34_[+2]_38 chr8:42426775-42426855 0.0006 58_[+2]_14 chr11:3853165-3853245 0.00068 6_[+2]_66 chr5:118604948-118605028 0.00068 47_[+2]_25 chr16:22227765-22227845 0.00068 34_[+2]_38 chr1:45501496-45501576 0.00079 24_[+2]_48 chr6:88881193-88881273 0.00079 64_[+2]_8 chr1:84744717-84744797 0.00079 33_[+2]_39 chr4:77011566-77011646 0.00098 48_[+2]_24 chr1:20301491-20301571 0.00098 67_[+2]_5 chr1:35965565-35965645 0.00098 25_[+2]_47 chr22:21221977-21222057 0.00098 20_[+2]_52 chr6:13909344-13909424 0.00098 46_[+2]_26 chr12:122326178-12232625 0.001 1_[+2]_71 chr8:106334305-106334385 0.001 57_[+2]_15 chr17:41400643-41400723 0.0011 65_[+2]_7 chr3:9954144-9954224 0.0011 56_[+2]_16 chr1:86901161-86901241 0.0011 15_[+2]_57 chr16:80004735-80004815 0.0013 18_[+2]_54 chr1:22076522-22076602 0.0013 64_[+2]_8 chr15:67471303-67471383 0.0013 44_[+2]_28 chr1:41440756-41440836 0.0013 26_[+2]_46 chr3:14246609-14246689 0.0013 63_[+2]_9 chr22:20239502-20239582 0.0013 62_[+2]_10 chr22:20239295-20239375 0.0013 71_[+2]_1 chr1:175703059-175703139 0.0013 50_[+2]_22 chr18:52830918-52830998 0.0013 46_[+2]_26 chr16:81848530-81848610 0.0013 67_[+2]_5 chr1:168250989-168251069 0.0013 29_[+2]_43 chr6:24755650-24755730 0.0013 53_[+2]_19 chr2:172104853-172104933 0.0014 [+2]_72 chr5:111885586-111885666 0.0014 47_[+2]_25 chr7:77464010-77464090 0.0014 49_[+2]_23 chr3:182502461-182502541 0.0015 71_[+2]_1 chr18:71909945-71910025 0.0015 38_[+2]_34 chr20:49990620-49990700 0.0015 4_[+2]_68 chr7:26728925-26729005 0.0015 67_[+2]_5 chr1:186164629-186164709 0.0015 72_[+2] chr4:178958727-178958807 0.0015 25_[+2]_47 chr2:42423662-42423742 0.0015 56_[+2]_16 chr14:25454283-25454363 0.0016 41_[+2]_31 chr11:43715490-43715570 0.0016 17_[+2]_55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSTTATCT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TSTTATCT width=8 seqs=140 chr6:139818573-139818653 ( 42) TCTTATCT 1 chr22:21211761-21211841 ( 29) TCTTATCT 1 chr12:92773070-92773150 ( 2) TCTTATCT 1 chr1:113689573-113689653 ( 9) TCTTATCT 1 chr4:48856062-48856142 ( 2) TCTTATCT 1 chr1:23866475-23866555 ( 52) TCTTATCT 1 chr3:186928895-186928975 ( 49) TCTTATCT 1 chr10:74050948-74051028 ( 44) TCTTATCT 1 chrX:2826292-2826372 ( 70) TCTTATCT 1 chr20:39890753-39890833 ( 50) TCTTATCT 1 chr7:116058197-116058277 ( 41) TCTTATCT 1 chr12:51789586-51789666 ( 1) TCTTATCT 1 chr8:42749465-42749545 ( 26) TCTTATCT 1 chr11:56918038-56918118 ( 56) TCTTATCT 1 chr7:12732575-12732655 ( 9) TGTTATCT 1 chr1:212101793-212101873 ( 11) TGTTATCT 1 chr17:43980353-43980433 ( 1) TGTTATCT 1 chr3:4729059-4729139 ( 11) TGTTATCT 1 chr2:145648650-145648730 ( 14) TGTTATCT 1 chr6:11393352-11393432 ( 18) TGTTATCT 1 chr4:25724767-25724847 ( 72) TGTTATCT 1 chr11:123985720-12398580 ( 9) CCTTATCT 1 chr6:7026338-7026418 ( 51) CCTTATCT 1 chr6:26328058-26328138 ( 21) CCTTATCT 1 chr2:74263747-74263827 ( 13) CCTTATCT 1 chr16:71464773-71464853 ( 13) CCTTATCT 1 chr4:10347151-10347231 ( 58) CCTTATCT 1 chr5:142504338-142504418 ( 44) CGTTATCT 1 chr22:21132174-21132254 ( 33) GCTTATCT 1 chr15:69026829-69026909 ( 73) GCTTATCT 1 chr10:73740159-73740239 ( 68) GCTTATCT 1 chr7:115858326-115858406 ( 7) GCTTATCT 1 chr2:218083660-218083740 ( 5) GCTTATCT 1 chr6:169854790-169854870 ( 49) TCTTATCA 1 chr17:31187223-31187303 ( 44) TCTTATCA 1 chr7:91184359-91184439 ( 4) TCTTATCA 1 chr6:126433568-126433648 ( 13) TTTTATCT 1 chr17:61458586-61458666 ( 31) TTTTATCT 1 chr4:170534489-170534569 ( 23) TTTTATCT 1 chr6:134516840-134516920 ( 2) TTTTATCT 1 chr1:20525617-20525697 ( 42) TTTTATCT 1 chr1:12243690-12243770 ( 12) TTTTATCT 1 chr7:37397319-37397399 ( 14) TTTTATCT 1 chr21:35459382-35459462 ( 68) TTTTATCT 1 chr12:89934443-89934523 ( 52) ACTTATCT 1 chr7:135718328-135718408 ( 8) TCTCATCT 1 chr11:3684243-3684323 ( 39) TCTCATCT 1 chr3:148803675-148803755 ( 30) ACTTATCT 1 chr1:62247002-62247082 ( 69) ACTTATCT 1 chr1:32593511-32593591 ( 48) GGTTATCT 1 chr5:36111478-36111558 ( 43) ACTTATCT 1 chr8:125647799-125647879 ( 52) GGTTATCT 1 chr3:15727527-15727607 ( 8) ACTTATCT 1 chr1:48387803-48387883 ( 16) TCTCATCT 1 chr1:1814997-1815077 ( 3) TGTTATCA 1 chr9:130677301-130677381 ( 22) TGTTATCA 1 chr6:80177588-80177668 ( 45) TGTTATCA 1 chr4:80599792-80599872 ( 59) TGTTATCA 1 chr10:82422405-82422485 ( 25) TCCTATCT 1 chr11:75117444-75117524 ( 18) TGTTATCA 1 chr15:96241588-96241668 ( 59) TGTTATCA 1 chr12:89787595-89787675 ( 1) TCTAATCT 1 chr4:84285659-84285739 ( 7) TGTCATCT 1 chr16:80046589-80046669 ( 26) AGTTATCT 1 chr6:11964507-11964587 ( 39) TCTAATCT 1 chr8:97842285-97842365 ( 31) AGTTATCT 1 chr16:68098926-68099006 ( 41) TGTCATCT 1 chr6:136652789-136652869 ( 54) TCTAATCT 1 chr2:43405287-43405367 ( 37) AGTTATCT 1 chr7:134519733-134519813 ( 65) TCTAATCT 1 chr3:47159499-47159579 ( 1) TCTAATCT 1 chr6:85377403-85377483 ( 14) TGTCATCT 1 chr1:8075200-8075280 ( 13) AGTTATCT 1 chr7:98685298-98685378 ( 54) TGCTATCT 1 chr11:67080227-67080307 ( 36) TGCTATCT 1 chr12:54342759-54342839 ( 38) TGCTATCT 1 chrX:117405832-117405912 ( 52) TGCTATCT 1 chr6:30847596-30847676 ( 17) TGCTATCT 1 chr3:178865127-178865207 ( 15) CCTTATCA 1 chr6:16109367-16109447 ( 41) TGCTATCT 1 chr22:22302156-22302236 ( 26) CCTTATCA 1 chrX:153389567-153389647 ( 18) CTTTATCT 1 chr3:156178150-156178230 ( 5) TATTATCT 1 chr6:136547922-136548002 ( 34) CCTCATCT 1 chr16:20837524-20837604 ( 58) CCTCATCT 1 chr10:62022634-62022714 ( 18) CCTCATCT 1 chr2:230605057-230605137 ( 2) TATTATCT 1 chrX:133392362-133392442 ( 72) TATTATCT 1 chr4:55252632-55252712 ( 60) TGTAATCT 1 chr6:147219358-147219438 ( 69) CCCTATCT 1 chr20:30261828-30261908 ( 10) CCCTATCT 1 chr6:10314636-10314716 ( 46) CCCTATCT 1 chr1:15143880-15143960 ( 52) CCCTATCT 1 chr1:30601957-30602037 ( 18) GCTTATCA 1 chr3:37812805-37812885 ( 31) GTTTATCT 1 chr1:18756367-18756447 ( 54) CCTAATCT 1 chr7:91262564-91262644 ( 72) GTTTATCT 1 chr2:74311111-74311191 ( 6) CCTAATCT 1 chr7:112038702-112038782 ( 35) GTTTATCT 1 chr8:42426775-42426855 ( 59) TTTTATCA 1 chr11:3853165-3853245 ( 7) GGTTATCA 1 chr5:118604948-118605028 ( 48) GGTTATCA 1 chr16:22227765-22227845 ( 35) ACTTATCA 1 chr1:45501496-45501576 ( 25) ATTTATCT 1 chr6:88881193-88881273 ( 65) CATTATCT 1 chr1:84744717-84744797 ( 34) CATTATCT 1 chr4:77011566-77011646 ( 49) TCTAATCA 1 chr1:20301491-20301571 ( 68) TGTCATCA 1 chr1:35965565-35965645 ( 26) GGCTATCT 1 chr22:21221977-21222057 ( 21) TCCCATCT 1 chr6:13909344-13909424 ( 47) TCCCATCT 1 chr12:122326178-12232625 ( 2) TGCTATCA 1 chr8:106334305-106334385 ( 58) TGCTATCA 1 chr17:41400643-41400723 ( 66) AGTCATCT 1 chr3:9954144-9954224 ( 57) CTTTATCA 1 chr1:86901161-86901241 ( 16) AGTCATCT 1 chr16:80004735-80004815 ( 19) TATTATCA 1 chr1:22076522-22076602 ( 65) TGCCATCT 1 chr15:67471303-67471383 ( 45) TATTATCA 1 chr1:41440756-41440836 ( 27) TCCAATCT 1 chr3:14246609-14246689 ( 64) TATTATCA 1 chr22:20239502-20239582 ( 63) CCTCATCA 1 chr22:20239295-20239375 ( 72) CCTCATCA 1 chr1:175703059-175703139 ( 51) AGCTATCT 1 chr18:52830918-52830998 ( 47) TGTAATCA 1 chr16:81848530-81848610 ( 68) TATTATCA 1 chr1:168250989-168251069 ( 30) CTTCATCT 1 chr6:24755650-24755730 ( 54) CTTCATCT 1 chr2:172104853-172104933 ( 1) AGTAATCT 1 chr5:111885586-111885666 ( 48) AGTAATCT 1 chr7:77464010-77464090 ( 50) AATTATCT 1 chr3:182502461-182502541 ( 72) TGCAATCT 1 chr18:71909945-71910025 ( 39) GTTTATCA 1 chr20:49990620-49990700 ( 5) CCTAATCA 1 chr7:26728925-26729005 ( 68) GTTTATCA 1 chr1:186164629-186164709 ( 73) CTTAATCT 1 chr4:178958727-178958807 ( 26) CGCTATCA 1 chr2:42423662-42423742 ( 57) CTTAATCT 1 chr14:25454283-25454363 ( 42) GTTCATCT 1 chr11:43715490-43715570 ( 18) GCCTATCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSTTATCT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.80188 E= 6.8e-047 -123 -7 -75 96 -199 100 57 -81 -1377 -51 -1377 161 -123 -65 -1377 142 182 -1377 -1377 -1377 -1377 -1377 -1377 186 -1377 216 -1377 -1377 -27 -1377 -1377 147 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSTTATCT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 140 E= 6.8e-047 0.121429 0.214286 0.128571 0.535714 0.071429 0.450000 0.321429 0.157143 0.000000 0.157143 0.000000 0.842857 0.121429 0.142857 0.000000 0.735714 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.235714 0.000000 0.000000 0.764286 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSTTATCT MEME-2 regular expression -------------------------------------------------------------------------------- [TC][CG]TTATC[TA] -------------------------------------------------------------------------------- Time 8.70 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGCWGNB MEME-3 width = 8 sites = 115 llr = 714 E-value = 3.5e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGCWGNB MEME-3 Description -------------------------------------------------------------------------------- Simplified A :7:35:32 pos.-specific C a:27::23 probability G ::8::a32 matrix T :3::5:24 bits 2.2 * * 2.0 * * 1.8 * * 1.5 * * * Relative 1.3 * * * Entropy 1.1 * ** * (9.0 bits) 0.9 ****** 0.7 ****** 0.4 ****** 0.2 ****** 0.0 -------- Multilevel CAGCTGAT consensus T AA GC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCWGNB MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:43405287-43405367 52 1.99e-05 TCTGTGTGTA CAGCTGGC TCCCCAAGAG chrX:117405832-117405912 65 1.99e-05 TATCTTATGG CAGCTGGT TTTGAAGA chr2:42423662-42423742 67 1.99e-05 CTTAATCTGG CAGCTGGC GAGAAG chr22:21211761-21211841 2 4.05e-05 G CAGCAGGC TGGTCTCCGG chr1:41440756-41440836 70 4.05e-05 caggcaatct cagcaggc tgt chr7:7140170-7140250 40 4.05e-05 GTATCTTGAA CAGCAGGC CTCAGCTTGC chr6:80177588-80177668 37 7.53e-05 CTGCTGGAAG CAGCTGAC TGTTATCACC chr2:156988811-156988891 44 7.53e-05 AAGAAGATTC CAGCTGAC TATCCAGTTA chr6:26332206-26332286 69 7.53e-05 CCTCCGTTCT CAGCTGAT GAGA chr10:74050948-74051028 66 7.53e-05 CATCTGTGGG CAGCTGGG Gagtgtg chr2:145648650-145648730 65 7.53e-05 aacatgatcc cagctgac ctgcatag chr1:62247002-62247082 24 7.53e-05 CCTCTCATGT CAGCTGAT GGCAGATAAA chr1:30601957-30602037 46 1.11e-04 ACGGTGTCAA CAGCAGAC AAGAAATGTT chr1:35965565-35965645 18 1.11e-04 AAAAAGAAGG CAGCAGAT GGCTATCTGG chr7:137671216-137671296 53 1.11e-04 actgccatga cAGCAGGG CTCGGGGATA chr5:43274695-43274775 38 1.43e-04 GGCTGATTGC CAGCTGAG ATTATTCAAG chr1:86901161-86901241 41 1.43e-04 TAGCAGCCTC CAGCTGCT TTAACtgatt chr20:39890753-39890833 70 1.43e-04 acaactgcca cagctgct taa chr9:132641543-132641623 40 1.43e-04 TGGTGAGCGG CAGCTGCC AGCAGAGATA chr7:120687173-120687253 71 1.43e-04 CCCTCAGCTT CAGCTGCT GC chr1:40167634-40167714 66 1.43e-04 CGGTGAGAGG CAGCTGCC AGCAGAG chr16:81848530-81848610 29 1.43e-04 gactaaacgt cagctGCT GGAGATGGTG chr20:30873661-30873741 20 2.07e-04 CACATCTGCA CAGCAGCT TGGGATGTTC chr12:92773070-92773150 21 2.07e-04 TGTCTGACAG CAGCAGAG CACACCAGAT chr8:125647799-125647879 40 2.07e-04 ctattctaat cagcagct ttcaggttat chr1:203275537-203275617 10 2.73e-04 CCTCTCTCC CAGCTGTT TCTAGCTGGT chr7:91262564-91262644 19 2.73e-04 TAGTGTAACG CTGCAGGT GCACAAATGC chr4:48856062-48856142 17 2.73e-04 TCTCCAAAGG CAGCTGTC CTTGTTCCTC chr20:35783231-35783311 10 2.73e-04 attatgttc cagctgtt gtgttaagca chr3:20501034-20501114 28 2.73e-04 GGCAGCCTGA CAGCTGTT TGAACAGATC chr6:36255564-36255644 71 2.73e-04 CTTCAGCCAG CAGCAGGA GA chr6:67894403-67894483 1 3.22e-04 . CTGCTGAT CTTATGTACT chr7:135718328-135718408 57 3.22e-04 GATGTAGATT CTGCTGGG GTGCTGTGTT chr9:117001334-117001414 21 3.22e-04 TAGCTCTGCT CAGCTGAA GGGGGAAGCT chr3:154848996-154849076 3 3.82e-04 ct cagatggc agcaagtcag chr11:95276149-95276229 27 3.82e-04 cagagtctcc cagatggc tgttctgctg chr12:65114809-65114889 4 3.82e-04 TTC CAGATGGT CAGATGAGGG chr1:18756367-18756447 14 3.82e-04 aaaagtatat cagatggc cactgcctac chr19:3374479-3374559 7 3.82e-04 GCCATT CAGATGGT GAAAATAGAC chr1:92912231-92912311 2 4.43e-04 A CAGCAGAA GGAATCCCAC chr19:14253611-14253691 35 4.43e-04 cactgctata cagctgtg ctgataaggt chr15:45341116-45341196 7 4.43e-04 tctgtg cagctgtg agcatgtctt chr3:4867492-4867572 55 4.43e-04 GGAGAGTTTC CTGCAGAT CATGATTAGA chr5:111885586-111885666 23 4.43e-04 CTCAAGTAGC CTGCAGAC ATGATTGGAG chr5:142504338-142504418 52 4.43e-04 ACCGTTATCT CTGCAGGG GATCTATGGT chr6:7199192-7199272 6 4.43e-04 TATTG CAGCAGAA TGTCTGGGCT chr7:115858326-115858406 27 4.43e-04 GCAGCGAGCC CAGCAGAA AAGATGGCAT chr2:102918519-102918599 16 4.43e-04 gaagagggcg ctgcagat atctctgtag chr16:85089133-85089213 35 4.43e-04 acacaaacaa ctgcaggg cttagtctgg chr7:112038702-112038782 57 4.43e-04 ggcttcctcc ctgcaggg ttgctgtggg chr1:15143880-15143960 3 4.43e-04 ta ctgcagat accaagataa chr10:62022634-62022714 43 5.12e-04 ACACCAGGTT CAGCTGCA GAAAGCCCTG chr6:24755650-24755730 31 5.12e-04 attgtccaaa ctgctgag tcacctatca chr6:25974302-25974382 46 5.12e-04 ttagttgggc ctgctgct tagggtctga chr17:27239500-27239580 60 5.12e-04 ATACCATCTC CTGCTGCT TGCGGGGGAG chr4:25724767-25724847 27 5.12e-04 ctggagtcct ctgctgag gactgatagt chr1:84744717-84744797 10 5.12e-04 CTCTAGTAA CAGCTGCA CACACAGATA chr4:84285659-84285739 59 5.99e-04 CAAAGCAATG CAGATGAC TTTTAGATTG chr22:49893756-49893836 27 5.99e-04 atagactaga cagatgat agattagata chr11:58513483-58513563 19 5.99e-04 TATAGTCAAA CAGATGGG TCAGATAACT chr2:160008768-160008848 50 5.99e-04 CTGAGATAAG CAGATGAC TTTCTTCACA chr17:48891143-48891223 50 5.99e-04 gatggataga cagatgat agattagata chr1:48387803-48387883 39 5.99e-04 CCTAGATAAG CAGCAGTG TGAGCTGGCC chr20:49990620-49990700 42 6.43e-04 agcccttgct ctgcagag tGCTGGGAAC chr12:89787595-89787675 57 7.69e-04 TACCATCAAC CACCAGGC AGAGAAAGTT chr7:43790231-43790311 24 7.69e-04 caaaccatat caGAAGGG GATGCAAGAA chr4:178958727-178958807 9 7.69e-04 aaggacat caccaggc atactcctcc chr6:159425719-159425799 45 7.69e-04 agaaagtaat cagctgta tctaatgcta chr1:233926994-233927074 48 7.69e-04 TCTAGTGGCA CTGCAGGA GCATAACACA chr11:36586735-36586815 55 7.69e-04 CAGACCATGG CTGCAGGA GTAGATTTTG chr6:88881193-88881273 2 8.60e-04 A CAGATGCT GTAGATTATC chr6:159184014-159184094 49 9.48e-04 taacgtgtat ctgcAGTC ATGGTGGGAG chr17:43980353-43980433 21 9.48e-04 GGATCTAAGT CTGCAGTT TCACCACAAA chr12:54342759-54342839 56 9.48e-04 TTCTCATAAT CTGATGGT ACTCCCCACT chr6:11393352-11393432 47 9.48e-04 AGCCAGTTTG CTGATGGC TGTCTTCAAA chr7:37397319-37397399 41 9.48e-04 CACATGTTTG CTGCAGTT TGGTTTAAGA chr11:56918038-56918118 5 9.48e-04 gaaa ctgatggt tatctccctg chr8:74224732-74224812 7 1.05e-03 GAGCGC CACCAGAT GTCATTTTAG chr4:155635626-155635706 22 1.05e-03 ACCAGATAAG CAGAAGCT GAGGTCTAGC chr8:87522876-87522956 25 1.05e-03 tcctaaacca cagaagct atgacagata chr15:69026829-69026909 53 1.05e-03 TGTCTCAACA CAGAAGAG CATCTACTGA chr2:28767704-28767784 57 1.05e-03 AGCCCTTGAG CACCAGAC AGAGAAGCTG chr6:139866861-139866941 3 1.05e-03 GC CAGAAGCC AAGGAAATTT chr18:52830918-52830998 60 1.05e-03 AATCAGAAAC CACCAGAC AAGATTATAC chr17:76955011-76955091 68 1.05e-03 CTCTCCATCT CTGCTGTG GTCTG chr6:169854790-169854870 66 1.18e-03 ACGCAAGCAC CAGAAGGA ATCTTCA chr1:23866475-23866555 29 1.18e-03 TGAACTCTGG CACCTGCC AAAGCCTGCG chr2:218083660-218083740 61 1.18e-03 CCAGTGTTGA CAGATGTT CAGTAGAGAC chr16:71464773-71464853 68 1.18e-03 CACGGAACAA CAGAAGGA CAATC chr11:47938063-47938143 66 1.18e-03 ATATGGATCT CTGAAGGC ACTGCAG chrX:153389567-153389647 67 1.28e-03 atatcattgt cagatgaa gatgcg chr2:112784279-112784359 52 1.28e-03 GGAAAGTGGA CAGATGAA AAGATATTAT chr22:20239295-20239375 15 1.38e-03 tcatcaccat caccagcc tcaacaccat chr4:55252632-55252712 51 1.38e-03 CAGAAATGAC CAGAAGTC CTGTAATCTG chr1:246660752-246660832 44 1.38e-03 CTCCATTGTC CACCAGAG GGAGCATCAC chr3:37812805-37812885 62 1.54e-03 AGGTAGTCCC CTGCTGTA ATGAAAATGC chr11:123985720-12398580 23 1.54e-03 ATCTTTCCCC CTGCTGTA GGGGAGGGGC chr6:147481195-147481275 70 1.54e-03 TCAGAGCTGA CAGAAGAA GAG chr3:193628935-193629015 16 1.54e-03 CAAAGACTGT CTCCAGGC TGTAGCCATT chr3:9954144-9954224 34 1.54e-03 tgacaaattt cacctgtt acgtaactag chr3:4729059-4729139 67 1.54e-03 aagaaatgtg ctccaggt cacaca chr11:46269290-46269370 7 1.54e-03 TCACAT CACCTGTC CCCATGGTGG chr7:127005393-127005473 47 1.54e-03 TAAGATAAGC CTGAAGAT AACTGAAGTG chr6:107277437-107277517 29 1.64e-03 aatcaactgc ctgatgct gcctctccct chr16:68098926-68099006 2 1.64e-03 T CTGATGAG GGAAGAAGAT chr11:67080227-67080307 50 1.64e-03 ATCTCCCCAT CTCCTGGG GCAGGGCCTG chr16:80004735-80004815 9 1.75e-03 GAAGTGTT CACCAGTT GATATTATCA chr19:35657685-35657765 55 1.75e-03 taggcaaagt cacatggc aaaggacatg chr1:16477988-16478068 62 1.87e-03 GTGGGAACAG CTCCAGGG TGGAGGAGGG chr3:36948122-36948202 18 1.87e-03 aaggtgatga cagaagca gagattggaa chr4:10347151-10347231 73 1.87e-03 TCTATTCAGT CACCAGAA chr21:35459382-35459462 27 1.87e-03 GAGATGGTGG CTCCAGAT ACAGGTTTTT chr3:182502461-182502541 50 2.01e-03 GACAACATCA CTCCTGCT TTGTATAGAT chr6:147219358-147219438 53 2.01e-03 gcaccatgaa ctcctgcc tcatgaaccc chr22:21221977-21222057 45 3.35e-03 CTAAATCAGC CATCTGGT TTCCTTAACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCWGNB MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:43405287-43405367 2e-05 51_[+3]_21 chrX:117405832-117405912 2e-05 64_[+3]_8 chr2:42423662-42423742 2e-05 66_[+3]_6 chr22:21211761-21211841 4e-05 1_[+3]_71 chr1:41440756-41440836 4e-05 69_[+3]_3 chr7:7140170-7140250 4e-05 39_[+3]_33 chr6:80177588-80177668 7.5e-05 36_[+3]_36 chr2:156988811-156988891 7.5e-05 43_[+3]_29 chr6:26332206-26332286 7.5e-05 68_[+3]_4 chr10:74050948-74051028 7.5e-05 65_[+3]_7 chr2:145648650-145648730 7.5e-05 64_[+3]_8 chr1:62247002-62247082 7.5e-05 23_[+3]_49 chr1:30601957-30602037 0.00011 45_[+3]_27 chr1:35965565-35965645 0.00011 17_[+3]_55 chr7:137671216-137671296 0.00011 52_[+3]_20 chr5:43274695-43274775 0.00014 37_[+3]_35 chr1:86901161-86901241 0.00014 40_[+3]_32 chr20:39890753-39890833 0.00014 69_[+3]_3 chr9:132641543-132641623 0.00014 39_[+3]_33 chr7:120687173-120687253 0.00014 70_[+3]_2 chr1:40167634-40167714 0.00014 65_[+3]_7 chr16:81848530-81848610 0.00014 28_[+3]_44 chr20:30873661-30873741 0.00021 19_[+3]_53 chr12:92773070-92773150 0.00021 20_[+3]_52 chr8:125647799-125647879 0.00021 39_[+3]_33 chr1:203275537-203275617 0.00027 9_[+3]_63 chr7:91262564-91262644 0.00027 18_[+3]_54 chr4:48856062-48856142 0.00027 16_[+3]_56 chr20:35783231-35783311 0.00027 9_[+3]_63 chr3:20501034-20501114 0.00027 27_[+3]_45 chr6:36255564-36255644 0.00027 70_[+3]_2 chr6:67894403-67894483 0.00032 [+3]_72 chr7:135718328-135718408 0.00032 56_[+3]_16 chr9:117001334-117001414 0.00032 20_[+3]_52 chr3:154848996-154849076 0.00038 2_[+3]_70 chr11:95276149-95276229 0.00038 26_[+3]_46 chr12:65114809-65114889 0.00038 3_[+3]_69 chr1:18756367-18756447 0.00038 13_[+3]_59 chr19:3374479-3374559 0.00038 6_[+3]_66 chr1:92912231-92912311 0.00044 1_[+3]_71 chr19:14253611-14253691 0.00044 34_[+3]_38 chr15:45341116-45341196 0.00044 6_[+3]_66 chr3:4867492-4867572 0.00044 54_[+3]_18 chr5:111885586-111885666 0.00044 22_[+3]_50 chr5:142504338-142504418 0.00044 51_[+3]_21 chr6:7199192-7199272 0.00044 5_[+3]_67 chr7:115858326-115858406 0.00044 26_[+3]_46 chr2:102918519-102918599 0.00044 15_[+3]_57 chr16:85089133-85089213 0.00044 34_[+3]_38 chr7:112038702-112038782 0.00044 56_[+3]_16 chr1:15143880-15143960 0.00044 2_[+3]_70 chr10:62022634-62022714 0.00051 42_[+3]_30 chr6:24755650-24755730 0.00051 30_[+3]_42 chr6:25974302-25974382 0.00051 45_[+3]_27 chr17:27239500-27239580 0.00051 59_[+3]_13 chr4:25724767-25724847 0.00051 26_[+3]_46 chr1:84744717-84744797 0.00051 9_[+3]_63 chr4:84285659-84285739 0.0006 58_[+3]_14 chr22:49893756-49893836 0.0006 26_[+3]_46 chr11:58513483-58513563 0.0006 18_[+3]_54 chr2:160008768-160008848 0.0006 49_[+3]_23 chr17:48891143-48891223 0.0006 49_[+3]_23 chr1:48387803-48387883 0.0006 38_[+3]_34 chr20:49990620-49990700 0.00064 41_[+3]_31 chr12:89787595-89787675 0.00077 56_[+3]_16 chr7:43790231-43790311 0.00077 23_[+3]_49 chr4:178958727-178958807 0.00077 8_[+3]_64 chr6:159425719-159425799 0.00077 44_[+3]_28 chr1:233926994-233927074 0.00077 47_[+3]_25 chr11:36586735-36586815 0.00077 54_[+3]_18 chr6:88881193-88881273 0.00086 1_[+3]_71 chr6:159184014-159184094 0.00095 48_[+3]_24 chr17:43980353-43980433 0.00095 20_[+3]_52 chr12:54342759-54342839 0.00095 55_[+3]_17 chr6:11393352-11393432 0.00095 46_[+3]_26 chr7:37397319-37397399 0.00095 40_[+3]_32 chr11:56918038-56918118 0.00095 4_[+3]_68 chr8:74224732-74224812 0.0011 6_[+3]_66 chr4:155635626-155635706 0.0011 21_[+3]_51 chr8:87522876-87522956 0.0011 24_[+3]_48 chr15:69026829-69026909 0.0011 52_[+3]_20 chr2:28767704-28767784 0.0011 56_[+3]_16 chr6:139866861-139866941 0.0011 2_[+3]_70 chr18:52830918-52830998 0.0011 59_[+3]_13 chr17:76955011-76955091 0.0011 67_[+3]_5 chr6:169854790-169854870 0.0012 65_[+3]_7 chr1:23866475-23866555 0.0012 28_[+3]_44 chr2:218083660-218083740 0.0012 60_[+3]_12 chr16:71464773-71464853 0.0012 67_[+3]_5 chr11:47938063-47938143 0.0012 65_[+3]_7 chrX:153389567-153389647 0.0013 66_[+3]_6 chr2:112784279-112784359 0.0013 51_[+3]_21 chr22:20239295-20239375 0.0014 14_[+3]_58 chr4:55252632-55252712 0.0014 50_[+3]_22 chr1:246660752-246660832 0.0014 43_[+3]_29 chr3:37812805-37812885 0.0015 61_[+3]_11 chr11:123985720-12398580 0.0015 22_[+3]_50 chr6:147481195-147481275 0.0015 69_[+3]_3 chr3:193628935-193629015 0.0015 15_[+3]_57 chr3:9954144-9954224 0.0015 33_[+3]_39 chr3:4729059-4729139 0.0015 66_[+3]_6 chr11:46269290-46269370 0.0015 6_[+3]_66 chr7:127005393-127005473 0.0015 46_[+3]_26 chr6:107277437-107277517 0.0016 28_[+3]_44 chr16:68098926-68099006 0.0016 1_[+3]_71 chr11:67080227-67080307 0.0016 49_[+3]_23 chr16:80004735-80004815 0.0017 8_[+3]_64 chr19:35657685-35657765 0.0017 54_[+3]_18 chr1:16477988-16478068 0.0019 61_[+3]_11 chr3:36948122-36948202 0.0019 17_[+3]_55 chr4:10347151-10347231 0.0019 72_[+3] chr21:35459382-35459462 0.0019 26_[+3]_46 chr3:182502461-182502541 0.002 49_[+3]_23 chr6:147219358-147219438 0.002 52_[+3]_20 chr22:21221977-21222057 0.0034 44_[+3]_28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCWGNB MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGCWGNB width=8 seqs=115 chr2:43405287-43405367 ( 52) CAGCTGGC 1 chrX:117405832-117405912 ( 65) CAGCTGGT 1 chr2:42423662-42423742 ( 67) CAGCTGGC 1 chr22:21211761-21211841 ( 2) CAGCAGGC 1 chr1:41440756-41440836 ( 70) CAGCAGGC 1 chr7:7140170-7140250 ( 40) CAGCAGGC 1 chr6:80177588-80177668 ( 37) CAGCTGAC 1 chr2:156988811-156988891 ( 44) CAGCTGAC 1 chr6:26332206-26332286 ( 69) CAGCTGAT 1 chr10:74050948-74051028 ( 66) CAGCTGGG 1 chr2:145648650-145648730 ( 65) CAGCTGAC 1 chr1:62247002-62247082 ( 24) CAGCTGAT 1 chr1:30601957-30602037 ( 46) CAGCAGAC 1 chr1:35965565-35965645 ( 18) CAGCAGAT 1 chr7:137671216-137671296 ( 53) CAGCAGGG 1 chr5:43274695-43274775 ( 38) CAGCTGAG 1 chr1:86901161-86901241 ( 41) CAGCTGCT 1 chr20:39890753-39890833 ( 70) CAGCTGCT 1 chr9:132641543-132641623 ( 40) CAGCTGCC 1 chr7:120687173-120687253 ( 71) CAGCTGCT 1 chr1:40167634-40167714 ( 66) CAGCTGCC 1 chr16:81848530-81848610 ( 29) CAGCTGCT 1 chr20:30873661-30873741 ( 20) CAGCAGCT 1 chr12:92773070-92773150 ( 21) CAGCAGAG 1 chr8:125647799-125647879 ( 40) CAGCAGCT 1 chr1:203275537-203275617 ( 10) CAGCTGTT 1 chr7:91262564-91262644 ( 19) CTGCAGGT 1 chr4:48856062-48856142 ( 17) CAGCTGTC 1 chr20:35783231-35783311 ( 10) CAGCTGTT 1 chr3:20501034-20501114 ( 28) CAGCTGTT 1 chr6:36255564-36255644 ( 71) CAGCAGGA 1 chr6:67894403-67894483 ( 1) CTGCTGAT 1 chr7:135718328-135718408 ( 57) CTGCTGGG 1 chr9:117001334-117001414 ( 21) CAGCTGAA 1 chr3:154848996-154849076 ( 3) CAGATGGC 1 chr11:95276149-95276229 ( 27) CAGATGGC 1 chr12:65114809-65114889 ( 4) CAGATGGT 1 chr1:18756367-18756447 ( 14) CAGATGGC 1 chr19:3374479-3374559 ( 7) CAGATGGT 1 chr1:92912231-92912311 ( 2) CAGCAGAA 1 chr19:14253611-14253691 ( 35) CAGCTGTG 1 chr15:45341116-45341196 ( 7) CAGCTGTG 1 chr3:4867492-4867572 ( 55) CTGCAGAT 1 chr5:111885586-111885666 ( 23) CTGCAGAC 1 chr5:142504338-142504418 ( 52) CTGCAGGG 1 chr6:7199192-7199272 ( 6) CAGCAGAA 1 chr7:115858326-115858406 ( 27) CAGCAGAA 1 chr2:102918519-102918599 ( 16) CTGCAGAT 1 chr16:85089133-85089213 ( 35) CTGCAGGG 1 chr7:112038702-112038782 ( 57) CTGCAGGG 1 chr1:15143880-15143960 ( 3) CTGCAGAT 1 chr10:62022634-62022714 ( 43) CAGCTGCA 1 chr6:24755650-24755730 ( 31) CTGCTGAG 1 chr6:25974302-25974382 ( 46) CTGCTGCT 1 chr17:27239500-27239580 ( 60) CTGCTGCT 1 chr4:25724767-25724847 ( 27) CTGCTGAG 1 chr1:84744717-84744797 ( 10) CAGCTGCA 1 chr4:84285659-84285739 ( 59) CAGATGAC 1 chr22:49893756-49893836 ( 27) CAGATGAT 1 chr11:58513483-58513563 ( 19) CAGATGGG 1 chr2:160008768-160008848 ( 50) CAGATGAC 1 chr17:48891143-48891223 ( 50) CAGATGAT 1 chr1:48387803-48387883 ( 39) CAGCAGTG 1 chr20:49990620-49990700 ( 42) CTGCAGAG 1 chr12:89787595-89787675 ( 57) CACCAGGC 1 chr7:43790231-43790311 ( 24) CAGAAGGG 1 chr4:178958727-178958807 ( 9) CACCAGGC 1 chr6:159425719-159425799 ( 45) CAGCTGTA 1 chr1:233926994-233927074 ( 48) CTGCAGGA 1 chr11:36586735-36586815 ( 55) CTGCAGGA 1 chr6:88881193-88881273 ( 2) CAGATGCT 1 chr6:159184014-159184094 ( 49) CTGCAGTC 1 chr17:43980353-43980433 ( 21) CTGCAGTT 1 chr12:54342759-54342839 ( 56) CTGATGGT 1 chr6:11393352-11393432 ( 47) CTGATGGC 1 chr7:37397319-37397399 ( 41) CTGCAGTT 1 chr11:56918038-56918118 ( 5) CTGATGGT 1 chr8:74224732-74224812 ( 7) CACCAGAT 1 chr4:155635626-155635706 ( 22) CAGAAGCT 1 chr8:87522876-87522956 ( 25) CAGAAGCT 1 chr15:69026829-69026909 ( 53) CAGAAGAG 1 chr2:28767704-28767784 ( 57) CACCAGAC 1 chr6:139866861-139866941 ( 3) CAGAAGCC 1 chr18:52830918-52830998 ( 60) CACCAGAC 1 chr17:76955011-76955091 ( 68) CTGCTGTG 1 chr6:169854790-169854870 ( 66) CAGAAGGA 1 chr1:23866475-23866555 ( 29) CACCTGCC 1 chr2:218083660-218083740 ( 61) CAGATGTT 1 chr16:71464773-71464853 ( 68) CAGAAGGA 1 chr11:47938063-47938143 ( 66) CTGAAGGC 1 chrX:153389567-153389647 ( 67) CAGATGAA 1 chr2:112784279-112784359 ( 52) CAGATGAA 1 chr22:20239295-20239375 ( 15) CACCAGCC 1 chr4:55252632-55252712 ( 51) CAGAAGTC 1 chr1:246660752-246660832 ( 44) CACCAGAG 1 chr3:37812805-37812885 ( 62) CTGCTGTA 1 chr11:123985720-12398580 ( 23) CTGCTGTA 1 chr6:147481195-147481275 ( 70) CAGAAGAA 1 chr3:193628935-193629015 ( 16) CTCCAGGC 1 chr3:9954144-9954224 ( 34) CACCTGTT 1 chr3:4729059-4729139 ( 67) CTCCAGGT 1 chr11:46269290-46269370 ( 7) CACCTGTC 1 chr7:127005393-127005473 ( 47) CTGAAGAT 1 chr6:107277437-107277517 ( 29) CTGATGCT 1 chr16:68098926-68099006 ( 2) CTGATGAG 1 chr11:67080227-67080307 ( 50) CTCCTGGG 1 chr16:80004735-80004815 ( 9) CACCAGTT 1 chr19:35657685-35657765 ( 55) CACATGGC 1 chr1:16477988-16478068 ( 62) CTCCAGGG 1 chr3:36948122-36948202 ( 18) CAGAAGCA 1 chr4:10347151-10347231 ( 73) CACCAGAA 1 chr21:35459382-35459462 ( 27) CTCCAGAT 1 chr3:182502461-182502541 ( 50) CTCCTGCT 1 chr6:147219358-147219438 ( 53) CTCCTGCC 1 chr22:21221977-21222057 ( 45) CATCTGGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCWGNB MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.93638 E= 3.5e-001 -1349 216 -1349 -1349 126 -1349 -1349 22 -1349 -37 192 -498 -3 168 -1349 -1349 70 -1349 -1349 97 -1349 -1349 221 -1349 18 -23 58 -74 -78 35 -17 37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCWGNB MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 115 E= 3.5e-001 0.000000 1.000000 0.000000 0.000000 0.678261 0.000000 0.000000 0.321739 0.000000 0.173913 0.817391 0.008696 0.278261 0.721739 0.000000 0.000000 0.460870 0.000000 0.000000 0.539130 0.000000 0.000000 1.000000 0.000000 0.321739 0.191304 0.321739 0.165217 0.165217 0.286957 0.191304 0.356522 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCWGNB MEME-3 regular expression -------------------------------------------------------------------------------- C[AT]G[CA][TA]G[AG][TC] -------------------------------------------------------------------------------- Time 12.13 secs. ******************************************************************************** ******************************************************************************** MOTIF CACACASA MEME-4 width = 8 sites = 30 llr = 251 E-value = 1.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACACASA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a:8:9:8 pos.-specific C a:829:62 probability G ::2:1:4: matrix T :::::1:: bits 2.2 * 2.0 * 1.8 ** * 1.5 ** * Relative 1.3 ****** * Entropy 1.1 ******** (12.1 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACACACA consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACASA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:182502461-182502541 30 1.67e-05 TGCATGCACA CACACACA TTGACAACAT chr9:111666075-111666155 39 1.67e-05 Tacacacaca cacacaca cacacacaca chr22:22146167-22146247 14 1.67e-05 tgggagtgcc cacacaca tgcacacaaa chr15:96241588-96241668 69 1.67e-05 TGTTATCAGG CACACACA CTTG chr16:85089133-85089213 22 1.67e-05 ctgtaacaaa cacacaca aacaactgca chr16:71464773-71464853 37 1.67e-05 ACCCTCCTAC CACACACA AGATCATGGT chr1:32593511-32593591 62 1.67e-05 ATCTGCAaca cacacaca tacacacaca chr15:70755399-70755479 5 1.67e-05 caca cacacaca cacaAGGGTT chr1:203275537-203275617 70 3.27e-05 GGAACGCACC CACACAGA CCC chr1:212101793-212101873 35 3.27e-05 CTGTTTTCAT CACACAGA GGATGATAAG chr12:54342759-54342839 16 3.27e-05 GAAACGCAGA CACACAGA GGGGCTGAGA chr1:84744717-84744797 18 3.27e-05 AACAGCTGCA CACACAGA TAGCAAATCA chr1:113689573-113689653 55 4.87e-05 GCTACCACTA CAGACACA GCTACTCCCT chr5:111546305-111546385 10 4.87e-05 AGCCCATGG CAGACACA ATGTTGGAAG chr3:128134963-128135043 73 7.51e-05 ACCGGAGAAG CACCCACA chr1:92912231-92912311 22 7.51e-05 AATCCCACCA CACCCACA TTCAAGGGAA chr6:36255564-36255644 2 7.51e-05 a cacacacC CCTGGAGAGA chr7:134519733-134519813 12 9.05e-05 TGATGATGAA CAGACAGA GTGAGTGTGA chr6:147481195-147481275 14 1.32e-04 TCATAAAAAT CACACTCA CTAAAACATT chr22:21997570-21997650 56 1.32e-04 gaggggaatc cacacagc cttgagggtg chr7:77464010-77464090 12 1.32e-04 tattcaagag cacacagc tcttagtatc chr11:36586735-36586815 39 1.32e-04 GCAGCGTTCA CACACTCA GACCATGGCT chr3:14246609-14246689 5 1.47e-04 CAAG CACACTGA TATTGTGCAA chr16:68098926-68099006 28 1.89e-04 ATAGCAATGA CACAGACA TGCAGTGTCA chr16:55469453-55469533 58 1.89e-04 AACTGATATA CAGCCACA CGCCACAGAA chr11:9673941-9674021 16 1.89e-04 CAACTTTAGT CACAGACA TTCAACATTT chr3:4867492-4867572 1 2.55e-04 . CAGCCAGA GGCAACGCAA chr17:61458586-61458666 49 2.55e-04 TATACTGATG CAGACAGC ATGGTTGCCT chr19:3374479-3374559 33 2.90e-04 ACCTTACTGT CACCCAGC CACCTTCTCC chr5:118604948-118605028 71 3.05e-04 CCCCAGATTG CAGACTGA GA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACASA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:182502461-182502541 1.7e-05 29_[+4]_43 chr9:111666075-111666155 1.7e-05 38_[+4]_34 chr22:22146167-22146247 1.7e-05 13_[+4]_59 chr15:96241588-96241668 1.7e-05 68_[+4]_4 chr16:85089133-85089213 1.7e-05 21_[+4]_51 chr16:71464773-71464853 1.7e-05 36_[+4]_36 chr1:32593511-32593591 1.7e-05 61_[+4]_11 chr15:70755399-70755479 1.7e-05 4_[+4]_68 chr1:203275537-203275617 3.3e-05 69_[+4]_3 chr1:212101793-212101873 3.3e-05 34_[+4]_38 chr12:54342759-54342839 3.3e-05 15_[+4]_57 chr1:84744717-84744797 3.3e-05 17_[+4]_55 chr1:113689573-113689653 4.9e-05 54_[+4]_18 chr5:111546305-111546385 4.9e-05 9_[+4]_63 chr3:128134963-128135043 7.5e-05 72_[+4] chr1:92912231-92912311 7.5e-05 21_[+4]_51 chr6:36255564-36255644 7.5e-05 1_[+4]_71 chr7:134519733-134519813 9e-05 11_[+4]_61 chr6:147481195-147481275 0.00013 13_[+4]_59 chr22:21997570-21997650 0.00013 55_[+4]_17 chr7:77464010-77464090 0.00013 11_[+4]_61 chr11:36586735-36586815 0.00013 38_[+4]_34 chr3:14246609-14246689 0.00015 4_[+4]_68 chr16:68098926-68099006 0.00019 27_[+4]_45 chr16:55469453-55469533 0.00019 57_[+4]_15 chr11:9673941-9674021 0.00019 15_[+4]_57 chr3:4867492-4867572 0.00025 [+4]_72 chr17:61458586-61458666 0.00025 48_[+4]_24 chr19:3374479-3374559 0.00029 32_[+4]_40 chr5:118604948-118605028 0.00031 70_[+4]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACASA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACACASA width=8 seqs=30 chr3:182502461-182502541 ( 30) CACACACA 1 chr9:111666075-111666155 ( 39) CACACACA 1 chr22:22146167-22146247 ( 14) CACACACA 1 chr15:96241588-96241668 ( 69) CACACACA 1 chr16:85089133-85089213 ( 22) CACACACA 1 chr16:71464773-71464853 ( 37) CACACACA 1 chr1:32593511-32593591 ( 62) CACACACA 1 chr15:70755399-70755479 ( 5) CACACACA 1 chr1:203275537-203275617 ( 70) CACACAGA 1 chr1:212101793-212101873 ( 35) CACACAGA 1 chr12:54342759-54342839 ( 16) CACACAGA 1 chr1:84744717-84744797 ( 18) CACACAGA 1 chr1:113689573-113689653 ( 55) CAGACACA 1 chr5:111546305-111546385 ( 10) CAGACACA 1 chr3:128134963-128135043 ( 73) CACCCACA 1 chr1:92912231-92912311 ( 22) CACCCACA 1 chr6:36255564-36255644 ( 2) CACACACC 1 chr7:134519733-134519813 ( 12) CAGACAGA 1 chr6:147481195-147481275 ( 14) CACACTCA 1 chr22:21997570-21997650 ( 56) CACACAGC 1 chr7:77464010-77464090 ( 12) CACACAGC 1 chr11:36586735-36586815 ( 39) CACACTCA 1 chr3:14246609-14246689 ( 5) CACACTGA 1 chr16:68098926-68099006 ( 28) CACAGACA 1 chr16:55469453-55469533 ( 58) CAGCCACA 1 chr11:9673941-9674021 ( 16) CACAGACA 1 chr3:4867492-4867572 ( 1) CAGCCAGA 1 chr17:61458586-61458666 ( 49) CAGACAGC 1 chr19:3374479-3374559 ( 33) CACCCAGC 1 chr5:118604948-118605028 ( 71) CAGACTGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACASA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.5224 E= 1.5e+002 -1155 215 -1155 -1155 182 -1155 -1155 -1155 -1155 177 11 -1155 155 -43 -1155 -1155 -1155 206 -169 -1155 161 -1155 -1155 -105 -1155 142 89 -1155 155 -43 -1155 -1155 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACASA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 1.5e+002 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.766667 0.233333 0.000000 0.833333 0.166667 0.000000 0.000000 0.000000 0.933333 0.066667 0.000000 0.866667 0.000000 0.000000 0.133333 0.000000 0.600000 0.400000 0.000000 0.833333 0.166667 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACASA MEME-4 regular expression -------------------------------------------------------------------------------- CA[CG]ACA[CG]A -------------------------------------------------------------------------------- Time 15.36 secs. ******************************************************************************** ******************************************************************************** MOTIF GKGGRAGG MEME-5 width = 8 sites = 11 llr = 110 E-value = 1.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GKGGRAGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::4a:: pos.-specific C ::::2::: probability G a5aa5:aa matrix T :5:::::: bits 2.2 * ** ** 2.0 * ** ** 1.8 * ** *** 1.5 * ** *** Relative 1.3 * ** *** Entropy 1.1 **** *** (14.5 bits) 0.9 **** *** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGGGAGG consensus T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGGRAGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:128134963-128135043 50 6.23e-06 GCCGGAAGGT GGGGGAGG GGCCCACCGG chr3:37812805-37812885 6 1.42e-05 AAGTT GTGGGAGG ATGGATAGTC chr3:4867492-4867572 39 1.42e-05 GCAGGGGCTG GTGGGAGG AGAGTTTCCT chr6:159184014-159184094 60 1.42e-05 tgcAGTCATG GTGGGAGG CACCCCAAGG chr5:142504338-142504418 27 1.42e-05 GCACACAGGC GTGGGAGG ATTGTTGACC chr12:89934443-89934523 39 2.24e-05 cacgcctatg ggggaagg gtgggactta chr11:3853165-3853245 48 2.24e-05 TCAAAGGAGA GGGGAAGG ACAGCGTAGC chr9:132641543-132641623 18 2.24e-05 GCTGGGCAGA GGGGAAGG GGCGTGGTGA chr12:65114809-65114889 31 3.93e-05 GTTGCCAGAT GGGGCAGG TGAGCATATG chr17:41400643-41400723 46 3.93e-05 tcaaggcaag ggggcagg gtaaggagtg chrX:153389567-153389647 3 3.93e-05 ga gtggaagg aagactgctt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGGRAGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:128134963-128135043 6.2e-06 49_[+5]_23 chr3:37812805-37812885 1.4e-05 5_[+5]_67 chr3:4867492-4867572 1.4e-05 38_[+5]_34 chr6:159184014-159184094 1.4e-05 59_[+5]_13 chr5:142504338-142504418 1.4e-05 26_[+5]_46 chr12:89934443-89934523 2.2e-05 38_[+5]_34 chr11:3853165-3853245 2.2e-05 47_[+5]_25 chr9:132641543-132641623 2.2e-05 17_[+5]_55 chr12:65114809-65114889 3.9e-05 30_[+5]_42 chr17:41400643-41400723 3.9e-05 45_[+5]_27 chrX:153389567-153389647 3.9e-05 2_[+5]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGGRAGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GKGGRAGG width=8 seqs=11 chr3:128134963-128135043 ( 50) GGGGGAGG 1 chr3:37812805-37812885 ( 6) GTGGGAGG 1 chr3:4867492-4867572 ( 39) GTGGGAGG 1 chr6:159184014-159184094 ( 60) GTGGGAGG 1 chr5:142504338-142504418 ( 27) GTGGGAGG 1 chr12:89934443-89934523 ( 39) GGGGAAGG 1 chr11:3853165-3853245 ( 48) GGGGAAGG 1 chr9:132641543-132641623 ( 18) GGGGAAGG 1 chr12:65114809-65114889 ( 31) GGGGCAGG 1 chr17:41400643-41400723 ( 46) GGGGCAGG 1 chrX:153389567-153389647 ( 3) GTGGAAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGGRAGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.7222 E= 1.5e+003 -1010 -1010 221 -1010 -1010 -1010 134 72 -1010 -1010 221 -1010 -1010 -1010 221 -1010 36 -30 107 -1010 181 -1010 -1010 -1010 -1010 -1010 221 -1010 -1010 -1010 221 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGGRAGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 1.5e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.545455 0.454545 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.363636 0.181818 0.454545 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKGGRAGG MEME-5 regular expression -------------------------------------------------------------------------------- G[GT]GG[GA]AGG -------------------------------------------------------------------------------- Time 18.55 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:8075200-8075280 2.81e-02 80 chr1:246660752-246660832 2.13e-02 80 chr1:84744717-84744797 1.53e-04 15_[+4(1.67e-05)]_57 chr1:48387803-48387883 3.01e-04 80 chr9:100043246-100043326 1.48e-01 80 chr11:36586735-36586815 3.90e-03 80 chr6:85377403-85377483 5.99e-02 80 chr6:13909344-13909424 1.36e-01 80 chr11:43715490-43715570 2.23e-02 80 chr11:56918038-56918118 6.58e-03 55_[+2(2.26e-05)]_17 chr3:15727527-15727607 2.87e-01 80 chr1:236714858-236714938 9.88e-01 80 chr1:233926994-233927074 1.71e-02 80 chr12:104503047-10450312 2.16e-02 80 chr3:3238235-3238315 2.41e-01 80 chr6:36255564-36255644 5.51e-04 1_[+4(7.51e-05)]_24_[+1(9.68e-05)]_\ 39 chr22:22302156-22302236 1.06e-02 80 chr3:20501034-20501114 1.71e-03 80 chr8:10874494-10874574 1.06e-01 80 chr6:14449823-14449903 5.77e-03 80 chr9:96974545-96974625 7.15e-01 80 chr6:16109367-16109447 4.95e-02 80 chr8:125647799-125647879 2.81e-02 80 chr11:47938063-47938143 7.37e-02 80 chr6:88881193-88881273 1.28e-01 80 chr22:21221977-21222057 2.06e-01 80 chr7:91184359-91184439 4.68e-02 80 chr7:127005393-127005473 3.88e-02 37_[+1(6.05e-05)]_35 chr6:126375599-126375679 6.70e-02 80 chr22:22231204-22231284 5.67e-01 80 chr5:36111478-36111558 2.42e-01 80 chr4:55252632-55252712 1.88e-01 80 chr1:15143880-15143960 5.63e-03 80 chr17:48891143-48891223 9.44e-02 80 chr14:25454283-25454363 7.82e-01 80 chr3:47159499-47159579 3.41e-01 80 chr21:35459382-35459462 4.47e-04 2_[+5(8.02e-05)]_70 chr16:81848530-81848610 2.17e-02 80 chr6:29458524-29458604 3.00e-01 80 chr7:112038702-112038782 1.13e-02 80 chr7:37397319-37397399 1.38e-03 80 chr6:159425719-159425799 1.21e-01 80 chr3:178865127-178865207 8.88e-02 80 chr6:10314636-10314716 1.38e-03 22_[+1(9.68e-05)]_50 chr15:70755399-70755479 2.26e-03 [+4(1.67e-05)]_[+4(1.67e-05)]_24_\ [+4(7.51e-05)]_32 chr11:46269290-46269370 5.82e-01 80 chr2:42423662-42423742 2.47e-03 66_[+3(1.99e-05)]_6 chr1:32593511-32593591 3.64e-04 34_[+1(9.68e-05)]_17_[+4(1.67e-05)]_\ 4_[+4(1.67e-05)]_1 chr4:25724767-25724847 6.60e-03 56_[+2(6.28e-05)]_7_[+2(4.43e-05)]_\ 1 chr4:178958727-178958807 1.54e-01 80 chr7:26728925-26729005 8.21e-02 80 chr2:160008768-160008848 2.49e-02 41_[+1(1.80e-05)]_31 chr20:30261828-30261908 8.85e-02 80 chr5:172411416-172411496 5.44e-01 80 chr1:167218425-167218505 7.32e-01 80 chr17:27239500-27239580 2.27e-02 80 chr8:42749465-42749545 8.44e-03 25_[+2(2.26e-05)]_47 chr11:58513483-58513563 9.85e-03 80 chr4:10347151-10347231 1.60e-03 57_[+2(6.28e-05)]_15 chr7:137671216-137671296 2.33e-02 80 chr6:25974302-25974382 5.21e-02 80 chr3:36948122-36948202 4.54e-02 80 chr16:71464773-71464853 5.26e-04 12_[+2(6.28e-05)]_16_[+4(1.67e-05)]_\ 36 chr6:30847596-30847676 6.29e-02 80 chr1:12243690-12243770 5.27e-01 80 chrX:117405832-117405912 3.45e-03 64_[+3(1.99e-05)]_8 chr6:135395261-135395341 1.18e-01 80 chrX:133392362-133392442 1.27e-02 80 chr2:74311111-74311191 1.13e-01 80 chr22:21138647-21138727 6.41e-02 47_[+1(1.80e-05)]_25 chr19:35657685-35657765 1.18e-01 80 chr16:85089133-85089213 1.99e-02 21_[+4(1.67e-05)]_51 chr2:112784279-112784359 1.83e-01 80 chr1:203238289-203238369 1.54e-01 80 chr17:53421941-53422021 3.98e-02 80 chr6:11393352-11393432 6.63e-03 17_[+2(4.43e-05)]_55 chr1:62247002-62247082 8.17e-04 23_[+3(7.53e-05)]_49 chr11:78426923-78427003 5.31e-02 80 chr16:22227765-22227845 6.84e-03 12_[+1(3.68e-05)]_60 chr17:76955011-76955091 2.46e-01 80 chr15:96241588-96241668 1.92e-03 68_[+4(1.67e-05)]_4 chr2:102918519-102918599 2.14e-01 80 chr1:205680348-205680428 3.45e-01 80 chr18:52830918-52830998 8.86e-02 80 chr17:39686602-39686682 4.53e-02 80 chr12:94316415-94316495 3.02e-02 80 chr7:134519733-134519813 8.74e-03 11_[+4(9.05e-05)]_61 chr2:145648650-145648730 5.41e-04 13_[+2(4.43e-05)]_43_[+3(7.53e-05)]_\ 8 chr1:175703059-175703139 2.13e-02 42_[+1(1.80e-05)]_30 chr12:51789586-51789666 1.55e-03 [+2(2.26e-05)]_46_[+1(9.68e-05)]_18 chr1:16477988-16478068 1.40e-01 80 chr1:40167634-40167714 8.91e-04 80 chr1:20525617-20525697 1.79e-03 23_[+5(4.75e-05)]_49 chr6:139866861-139866941 1.75e-01 80 chr22:20239295-20239375 8.95e-02 80 chr7:120687173-120687253 2.49e-02 80 chr2:28767704-28767784 1.84e-04 21_[+1(1.80e-05)]_30_[+4(9.05e-05)]_\ 13 chr22:20239502-20239582 5.61e-01 80 chr2:74263747-74263827 1.90e-03 12_[+2(6.28e-05)]_37_[+1(1.80e-05)]_\ 15 chr2:218083660-218083740 3.83e-03 4_[+2(9.83e-05)]_68 chr11:9673941-9674021 1.04e-01 80 chr2:75089606-75089686 1.81e-01 80 chr2:43405287-43405367 1.79e-04 2_[+1(3.68e-05)]_41_[+3(1.99e-05)]_\ 21 chr12:54342759-54342839 7.44e-04 15_[+4(3.27e-05)]_57 chr1:186164629-186164709 5.92e-01 80 chr9:132641543-132641623 3.39e-05 17_[+5(2.24e-05)]_26_[+1(1.80e-05)]_\ 21 chr3:4729059-4729139 4.02e-03 10_[+2(4.43e-05)]_62 chr7:115858326-115858406 1.12e-03 6_[+2(9.83e-05)]_66 chr3:37011477-37011557 3.09e-01 80 chr16:55469453-55469533 1.89e-03 23_[+1(1.80e-05)]_49 chr7:7140170-7140250 9.41e-04 39_[+3(4.05e-05)]_33 chr1:52762033-52762113 5.38e-01 80 chr21:15954430-15954510 6.93e-01 80 chr17:43980353-43980433 4.14e-02 [+2(4.43e-05)]_72 chr6:136652789-136652869 4.03e-01 80 chr11:67080227-67080307 2.92e-03 54_[+5(3.93e-05)]_18 chr10:73740159-73740239 1.39e-01 67_[+2(9.83e-05)]_5 chr2:28148821-28148901 1.44e-01 80 chr15:69026829-69026909 9.89e-04 72_[+2(9.83e-05)] chr7:106319883-106319963 1.42e-01 80 chr7:116058197-116058277 2.73e-03 40_[+2(2.26e-05)]_32 chr19:3374479-3374559 1.01e-02 80 chr20:35783231-35783311 6.03e-02 80 chr11:75117444-75117524 3.78e-03 59_[+1(9.68e-05)]_13 chr16:68098926-68099006 7.11e-04 80 chr20:39890753-39890833 5.50e-03 49_[+2(2.26e-05)]_23 chr6:7199192-7199272 3.25e-01 80 chr22:21132174-21132254 2.56e-01 32_[+2(9.83e-05)]_40 chr10:82422405-82422485 6.19e-01 80 chr6:24755650-24755730 1.48e-01 80 chr22:49893756-49893836 4.80e-02 80 chr1:86901161-86901241 1.55e-02 80 chr6:119578359-119578439 1.40e-01 80 chr3:14246609-14246689 9.70e-04 41_[+1(3.68e-05)]_31 chr8:97842285-97842365 2.77e-02 65_[+1(9.68e-05)]_7 chr6:26328058-26328138 1.13e-01 20_[+2(6.28e-05)]_52 chr5:43274695-43274775 1.03e-01 80 chr8:106334305-106334385 4.24e-02 80 chrX:2826292-2826372 2.29e-01 5_[+2(2.26e-05)]_32_[+2(2.26e-05)]_\ 16_[+2(2.26e-05)]_3 chr12:117109951-11711003 4.68e-01 80 chr6:11964507-11964587 6.58e-01 80 chr16:80046589-80046669 2.60e-01 80 chr1:35965565-35965645 2.36e-02 80 chr1:184951357-184951437 4.12e-02 80 chr7:129063689-129063769 1.94e-01 80 chr1:20301491-20301571 2.39e-01 80 chr17:31187223-31187303 1.30e-03 69_[+1(9.68e-05)]_3 chr22:22146167-22146247 6.04e-04 13_[+4(1.67e-05)]_59 chr9:111666075-111666155 8.66e-02 30_[+4(1.67e-05)]_[+4(1.67e-05)]_\ [+4(1.67e-05)]_26 chr5:118604948-118605028 2.81e-02 80 chr5:142504338-142504418 7.77e-05 26_[+5(1.42e-05)]_9_[+2(8.06e-05)]_\ 29 chr20:49990620-49990700 1.03e-03 20_[+1(9.68e-05)]_52 chr3:9954144-9954224 2.35e-01 80 chr6:107277437-107277517 3.87e-01 80 chr9:117001334-117001414 3.05e-04 80 chr10:74050948-74051028 2.14e-04 43_[+2(2.26e-05)]_14_[+3(7.53e-05)]_\ 7 chr6:26332206-26332286 8.15e-04 35_[+1(9.68e-05)]_25_[+3(7.53e-05)]_\ 4 chr3:186928895-186928975 1.01e-01 48_[+2(2.26e-05)]_24 chr1:23866475-23866555 4.40e-03 51_[+2(2.26e-05)]_21 chr18:71909945-71910025 3.96e-03 80 chr2:156988811-156988891 9.94e-03 43_[+3(7.53e-05)]_29 chr4:48856062-48856142 9.63e-03 1_[+2(2.26e-05)]_71 chr7:91262564-91262644 7.08e-03 80 chr3:148803675-148803755 2.87e-03 52_[+1(3.68e-05)]_20 chr8:42426775-42426855 2.17e-02 80 chrX:153389567-153389647 8.49e-04 2_[+5(3.93e-05)]_70 chr5:111546305-111546385 5.81e-04 9_[+4(4.87e-05)]_63 chr4:84285659-84285739 3.69e-02 80 chr1:113689573-113689653 1.44e-03 8_[+2(2.26e-05)]_20_[+4(4.87e-05)]_\ 10_[+4(4.87e-05)]_18 chr1:168250989-168251069 4.58e-01 80 chr12:120030247-12003032 2.52e-02 9_[+1(1.80e-05)]_63 chr6:134516840-134516920 2.69e-01 80 chr14:31291380-31291460 4.39e-02 16_[+1(1.80e-05)]_56 chr7:98685298-98685378 3.17e-01 80 chr12:92773070-92773150 2.37e-04 1_[+2(2.26e-05)]_71 chr3:193628935-193629015 1.64e-01 80 chr8:87522876-87522956 1.94e-01 80 chr1:41440756-41440836 1.25e-04 47_[+1(3.68e-05)]_14_[+3(4.05e-05)]_\ 3 chr1:18756367-18756447 4.94e-02 80 chr6:147219358-147219438 3.47e-03 80 chr4:170534489-170534569 6.42e-02 80 chr11:3853165-3853245 2.27e-02 47_[+5(2.24e-05)]_25 chr11:3684243-3684323 5.77e-01 80 chr10:11645149-11645229 7.87e-02 37_[+1(1.80e-05)]_35 chr17:41400643-41400723 3.16e-02 45_[+5(3.93e-05)]_27 chr15:67471303-67471383 1.36e-01 80 chr1:30601957-30602037 4.24e-04 4_[+1(6.05e-05)]_68 chr7:135718328-135718408 6.79e-02 80 chr6:50927053-50927133 2.59e-01 80 chr7:77464010-77464090 1.14e-01 80 chr2:230605057-230605137 7.56e-03 32_[+1(9.68e-05)]_40 chr17:61458586-61458666 1.73e-04 66_[+1(1.80e-05)]_6 chr12:65114809-65114889 3.46e-03 30_[+5(3.93e-05)]_42 chr12:122326178-12232625 3.76e-02 80 chr6:7026338-7026418 1.09e-01 50_[+2(6.28e-05)]_22 chr5:111885586-111885666 6.53e-02 80 chr3:182502461-182502541 2.92e-03 25_[+4(1.67e-05)]_47 chr1:190729173-190729253 8.52e-02 23_[+1(6.05e-05)]_49 chr22:21997570-21997650 6.15e-02 80 chr2:172104853-172104933 3.34e-01 80 chr6:147481195-147481275 4.71e-02 80 chr6:159184014-159184094 5.57e-04 34_[+1(9.68e-05)]_17_[+5(1.42e-05)]_\ 13 chr3:141765355-141765435 4.17e-02 80 chr1:22076522-22076602 1.64e-01 80 chr4:80599792-80599872 3.95e-02 80 chr3:4867492-4867572 5.34e-05 38_[+5(1.42e-05)]_34 chr12:89934443-89934523 4.12e-03 38_[+5(2.24e-05)]_34 chr1:204386679-204386759 4.60e-01 80 chr11:123985720-12398580 3.32e-05 8_[+2(6.28e-05)]_50_[+1(1.80e-05)]_\ 6 chr16:80004735-80004815 2.76e-01 80 chr15:45341116-45341196 2.65e-01 80 chr3:37812805-37812885 3.73e-05 5_[+5(1.42e-05)]_32_[+1(1.80e-05)]_\ 27 chr6:80177588-80177668 5.96e-03 36_[+3(7.53e-05)]_36 chr18:967167-967247 3.29e-01 80 chr6:126433568-126433648 1.06e-01 80 chr6:67894403-67894483 7.00e-02 80 chr11:95276149-95276229 8.08e-02 80 chr4:155635626-155635706 1.12e-02 13_[+1(3.68e-05)]_59 chr19:39892115-39892195 2.95e-02 26_[+1(3.68e-05)]_46 chr1:212101793-212101873 1.37e-04 10_[+2(4.43e-05)]_16_[+4(3.27e-05)]_\ 38 chr7:66334732-66334812 1.23e-01 80 chr5:95054042-95054122 8.85e-03 30_[+1(3.68e-05)]_42 chr7:66387281-66387361 9.22e-02 80 chr1:203275537-203275617 2.43e-03 69_[+4(3.27e-05)]_3 chr19:14253611-14253691 2.27e-02 80 chr20:30873661-30873741 2.75e-02 80 chr7:43790231-43790311 6.58e-02 80 chr7:12732575-12732655 1.08e-02 8_[+2(4.43e-05)]_64 chr9:130677301-130677381 2.53e-02 11_[+1(9.68e-05)]_61 chr1:1814997-1815077 4.44e-02 80 chr3:154848996-154849076 7.13e-03 80 chr10:62022634-62022714 3.82e-02 80 chrX:130086455-130086535 2.95e-01 80 chr1:53079860-53079940 5.07e-02 80 chr6:135302123-135302203 1.61e-02 80 chr22:21211761-21211841 1.78e-03 1_[+3(4.05e-05)]_19_[+2(2.26e-05)]_\ 44 chr22:21340776-21340856 2.78e-01 80 chr8:74224732-74224812 4.14e-02 66_[+1(6.05e-05)]_6 chr6:169854790-169854870 4.20e-02 80 chr16:20837524-20837604 1.24e-02 80 chr1:45501496-45501576 3.77e-03 6_[+1(6.05e-05)]_66 chr1:92912231-92912311 1.08e-02 21_[+4(7.51e-05)]_51 chr4:77011566-77011646 2.31e-01 80 chr12:89787595-89787675 1.98e-02 80 chr6:139818573-139818653 1.97e-02 41_[+2(2.26e-05)]_31 chr6:136547922-136548002 1.17e-02 80 chr3:128134963-128135043 1.04e-04 49_[+5(6.23e-06)]_15_[+4(7.51e-05)] chr6:15622187-15622267 6.43e-01 80 chr3:156178150-156178230 2.28e-01 80 chr10:82138113-82138193 1.45e-02 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n07.farnam.hpc.yale.internal ********************************************************************************