******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/FOXM1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2:231263561-231263641 1.0000 80 chr15:67417928-67418008 1.0000 80 chr20:35464125-35464205 1.0000 80 chr5:175612234-175612314 1.0000 80 chr6:139811770-139811850 1.0000 80 chr2:55717829-55717909 1.0000 80 chr12:6873558-6873638 1.0000 80 chr10:22519487-22519567 1.0000 80 chr5:73687399-73687479 1.0000 80 chr16:20774983-20775063 1.0000 80 chrX:153990610-153990690 1.0000 80 chr19:7577293-7577373 1.0000 80 chr17:74835896-74835976 1.0000 80 chr2:242699945-242700025 1.0000 80 chr4:3939615-3939695 1.0000 80 chr9:123883934-123884014 1.0000 80 chr14:54863528-54863608 1.0000 80 chr6:111137394-111137474 1.0000 80 chr1:231189493-231189573 1.0000 80 chr16:2479141-2479221 1.0000 80 chr1:207693119-207693199 1.0000 80 chr5:147953945-147954025 1.0000 80 chr20:1448522-1448602 1.0000 80 chr1:169452934-169453014 1.0000 80 chrX:40028790-40028870 1.0000 80 chr15:30918186-30918266 1.0000 80 chr1:244488472-244488552 1.0000 80 chr3:47764538-47764618 1.0000 80 chr5:159848823-159848903 1.0000 80 chr3:120136302-120136382 1.0000 80 chr19:37262537-37262617 1.0000 80 chr12:14518584-14518664 1.0000 80 chr17:47468068-47468148 1.0000 80 chr3:50359018-50359098 1.0000 80 chr11:119205078-11920515 1.0000 80 chr7:133769706-133769786 1.0000 80 chr9:108435409-108435489 1.0000 80 chrX:119376842-119376922 1.0000 80 chr12:98884916-98884996 1.0000 80 chr12:98885116-98885196 1.0000 80 chr1:1446435-1446515 1.0000 80 chr2:12654974-12655054 1.0000 80 chr2:73944205-73944285 1.0000 80 chr13:49200294-49200374 1.0000 80 chr1:61543115-61543195 1.0000 80 chr17:57233025-57233105 1.0000 80 chr12:49717020-49717100 1.0000 80 chr7:112366220-112366300 1.0000 80 chr8:117887038-117887118 1.0000 80 chr5:25569250-25569330 1.0000 80 chr15:83847772-83847852 1.0000 80 chr2:172370384-172370464 1.0000 80 chr15:65117828-65117908 1.0000 80 chr4:145061881-145061961 1.0000 80 chr15:28539777-28539857 1.0000 80 chr17:40346511-40346591 1.0000 80 chr7:67181858-67181938 1.0000 80 chrX:2375956-2376036 1.0000 80 chr9:73222974-73223054 1.0000 80 chr2:200775796-200775876 1.0000 80 chr15:32907548-32907628 1.0000 80 chr9:110036506-110036586 1.0000 80 chr15:32907749-32907829 1.0000 80 chr1:36103114-36103194 1.0000 80 chr9:100807720-100807800 1.0000 80 chr11:64795138-64795218 1.0000 80 chr13:53029446-53029526 1.0000 80 chr20:814299-814379 1.0000 80 chr10:94352826-94352906 1.0000 80 chr4:174255733-174255813 1.0000 80 chr12:50678314-50678394 1.0000 80 chr1:211848976-211849056 1.0000 80 chr1:109419500-109419580 1.0000 80 chr21:46300854-46300934 1.0000 80 chr22:21452579-21452659 1.0000 80 chr10:106098387-10609846 1.0000 80 chr19:2865428-2865508 1.0000 80 chr16:23690102-23690182 1.0000 80 chr3:183087053-183087133 1.0000 80 chr1:88292434-88292514 1.0000 80 chr3:6560639-6560719 1.0000 80 chr1:167698189-167698269 1.0000 80 chr15:40675130-40675210 1.0000 80 chr8:125538327-125538407 1.0000 80 chr2:196217446-196217526 1.0000 80 chr3:172468386-172468466 1.0000 80 chr5:162887593-162887673 1.0000 80 chr2:234763288-234763368 1.0000 80 chr12:120315285-12031536 1.0000 80 chr1:32566993-32567073 1.0000 80 chr16:31084588-31084668 1.0000 80 chr8:144152496-144152576 1.0000 80 chr5:176739620-176739700 1.0000 80 chr17:80712974-80713054 1.0000 80 chr4:144940538-144940618 1.0000 80 chr11:125757463-12575754 1.0000 80 chr21:38337854-38337934 1.0000 80 chr14:102276103-10227618 1.0000 80 chr2:201390849-201390929 1.0000 80 chrX:124288961-124289041 1.0000 80 chr8:3040726-3040806 1.0000 80 chr1:205720594-205720674 1.0000 80 chr12:6603165-6603245 1.0000 80 chr1:21113197-21113277 1.0000 80 chr4:110834401-110834481 1.0000 80 chr1:197115871-197115951 1.0000 80 chr20:54967272-54967352 1.0000 80 chr15:59397247-59397327 1.0000 80 chr19:3506033-3506113 1.0000 80 chr1:43824541-43824621 1.0000 80 chr5:156570055-156570135 1.0000 80 chrX:119468636-119468716 1.0000 80 chr3:127309622-127309702 1.0000 80 chrX:2382110-2382190 1.0000 80 chr10:91461685-91461765 1.0000 80 chr12:10517671-10517751 1.0000 80 chr1:51434443-51434523 1.0000 80 chr19:7577503-7577583 1.0000 80 chr20:3776834-3776914 1.0000 80 chr17:38574241-38574321 1.0000 80 chr1:150208881-150208961 1.0000 80 chr12:98910315-98910395 1.0000 80 chrX:124353869-124353949 1.0000 80 chr16:18815554-18815634 1.0000 80 chr22:18484506-18484586 1.0000 80 chrX:2382765-2382845 1.0000 80 chr7:134832200-134832280 1.0000 80 chr12:27856679-27856759 1.0000 80 chr6:111137194-111137274 1.0000 80 chr7:97990320-97990400 1.0000 80 chr5:137514704-137514784 1.0000 80 chr13:73301900-73301980 1.0000 80 chr8:102210813-102210893 1.0000 80 chr20:2083096-2083176 1.0000 80 chr7:28961643-28961723 1.0000 80 chr17:80476927-80477007 1.0000 80 chr9:140135490-140135570 1.0000 80 chr15:69706624-69706704 1.0000 80 chr9:38170985-38171065 1.0000 80 chrX:89713167-89713247 1.0000 80 chrX:2370258-2370338 1.0000 80 chr17:74261062-74261142 1.0000 80 chr6:27862272-27862352 1.0000 80 chr6:27760172-27760252 1.0000 80 chr4:79632879-79632959 1.0000 80 chr5:176739418-176739498 1.0000 80 chr1:207865343-207865423 1.0000 80 chr3:151392006-151392086 1.0000 80 chr5:134241525-134241605 1.0000 80 chrX:2375417-2375497 1.0000 80 chr18:12991150-12991230 1.0000 80 chr10:91461484-91461564 1.0000 80 chr2:113522200-113522280 1.0000 80 chr4:130014690-130014770 1.0000 80 chr11:269490-269570 1.0000 80 chr5:137673643-137673723 1.0000 80 chr10:33240203-33240283 1.0000 80 chr12:64977575-64977655 1.0000 80 chr19:13001810-13001890 1.0000 80 chr10:25755086-25755166 1.0000 80 chr17:39001017-39001097 1.0000 80 chrX:69509927-69510007 1.0000 80 chr11:46344416-46344496 1.0000 80 chr16:15737461-15737541 1.0000 80 chr6:28047880-28047960 1.0000 80 chr12:131834925-13183500 1.0000 80 chr4:111232124-111232204 1.0000 80 chr21:38909264-38909344 1.0000 80 chr5:89826104-89826184 1.0000 80 chr11:46867831-46867911 1.0000 80 chr3:49333082-49333162 1.0000 80 chr11:9595133-9595213 1.0000 80 chr4:144826760-144826840 1.0000 80 chr4:175078549-175078629 1.0000 80 chr17:62340795-62340875 1.0000 80 chr11:93707066-93707146 1.0000 80 chr6:27099772-27099852 1.0000 80 chrX:2382964-2383044 1.0000 80 chr11:28129648-28129728 1.0000 80 chr6:43597727-43597807 1.0000 80 chr6:27775818-27775898 1.0000 80 chr7:75164486-75164566 1.0000 80 chr1:35658931-35659011 1.0000 80 chr9:37465699-37465779 1.0000 80 chr2:144910619-144910699 1.0000 80 chr16:15743906-15743986 1.0000 80 chr11:113535994-11353607 1.0000 80 chr15:75445666-75445746 1.0000 80 chr17:43025148-43025228 1.0000 80 chr17:28019409-28019489 1.0000 80 chr1:168317695-168317775 1.0000 80 chr15:41624936-41625016 1.0000 80 chr6:80714356-80714436 1.0000 80 chr5:126112380-126112460 1.0000 80 chr19:21795059-21795139 1.0000 80 chr15:40615638-40615718 1.0000 80 chr17:2304981-2305061 1.0000 80 chr6:3160566-3160646 1.0000 80 chr12:57024171-57024251 1.0000 80 chr15:90118462-90118542 1.0000 80 chr19:35739136-35739216 1.0000 80 chr20:30327029-30327109 1.0000 80 chr19:45909696-45909776 1.0000 80 chr3:160117376-160117456 1.0000 80 chr12:49658615-49658695 1.0000 80 chr10:21816924-21817004 1.0000 80 chr12:110856256-11085633 1.0000 80 chr6:168256626-168256706 1.0000 80 chr2:54787646-54787726 1.0000 80 chr1:205719387-205719467 1.0000 80 chr17:66031760-66031840 1.0000 80 chr12:123868449-12386852 1.0000 80 chr20:23400683-23400763 1.0000 80 chr1:214776616-214776696 1.0000 80 chr2:38604408-38604488 1.0000 80 chr1:224544436-224544516 1.0000 80 chr8:38068330-38068410 1.0000 80 chr5:172068043-172068123 1.0000 80 chr11:61891403-61891483 1.0000 80 chr6:31707525-31707605 1.0000 80 chr3:45133652-45133732 1.0000 80 chr17:57906807-57906887 1.0000 80 chr11:118966347-11896642 1.0000 80 chr19:39616178-39616258 1.0000 80 chr14:55658328-55658408 1.0000 80 chr4:129733169-129733249 1.0000 80 chr10:63512397-63512477 1.0000 80 chr7:30066410-30066490 1.0000 80 chr15:82386177-82386257 1.0000 80 chr22:46692692-46692772 1.0000 80 chr12:30916053-30916133 1.0000 80 chr4:174139888-174139968 1.0000 80 chr3:156837357-156837437 1.0000 80 chr8:25316519-25316599 1.0000 80 chr19:1507845-1507925 1.0000 80 chr15:91498524-91498604 1.0000 80 chr19:10679842-10679922 1.0000 80 chr17:8113847-8113927 1.0000 80 chr1:54355503-54355583 1.0000 80 chr9:15293810-15293890 1.0000 80 chr3:32726379-32726459 1.0000 80 chr6:14975784-14975864 1.0000 80 chr12:104324060-10432414 1.0000 80 chr19:597679-597759 1.0000 80 chr14:100070924-10007100 1.0000 80 chr2:111435722-111435802 1.0000 80 chr16:29874658-29874738 1.0000 80 chr8:66546565-66546645 1.0000 80 chr12:77171800-77171880 1.0000 80 chr5:68462882-68462962 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_FOXM1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/FOXM1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.25 C 0.247 G 0.251 T 0.252 Background letter frequencies (from file dataset with add-one prior applied): A 0.25 C 0.247 G 0.251 T 0.252 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF WTTTRAAH MEME-1 width = 8 sites = 161 llr = 1166 E-value = 4.6e-114 ******************************************************************************** -------------------------------------------------------------------------------- Motif WTTTRAAH MEME-1 Description -------------------------------------------------------------------------------- Simplified A 3:::6aa3 pos.-specific C :::3:::2 probability G 2:::3::1 matrix T 4aa7:::4 bits 2.0 ** ** 1.8 ** ** 1.6 ** ** 1.4 ** ** Relative 1.2 *** ** Entropy 1.0 *** ** (10.4 bits) 0.8 ****** 0.6 ****** 0.4 ****** 0.2 ******** 0.0 -------- Multilevel TTTTAAAT consensus A CG A sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTTRAAH MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr4:174139888-174139968 29 1.59e-05 ACATGTATTC TTTTAAAT TTTGTCAGTT chr10:63512397-63512477 9 1.59e-05 GTGTTGTT TTTTAAAT CTATATTTGT chr10:21816924-21817004 65 1.59e-05 AGTTGTTTTT TTTTAAAT GAAGATTT chr6:3160566-3160646 25 1.59e-05 ACACGCGGAG TTTTAAAT AATGCCTGCC chr4:144826760-144826840 48 1.59e-05 AGGGGAGGCA TTTTAAAT GATGCAAGTT chr8:102210813-102210893 54 1.59e-05 CATACTGCAA TTTTAAAT ATTCCAACTC chr20:54967272-54967352 12 1.59e-05 AGGTTCTTCT TTTTAAAT AGGAGTTAAA chr4:144940538-144940618 50 1.59e-05 AGGGGAGGCA TTTTAAAT GATGCAAGTT chr1:32566993-32567073 12 1.59e-05 CTCTATTTTT TTTTAAAT TTCACTATGA chr16:23690102-23690182 19 1.59e-05 CGGGTTTGGA TTTTAAAT CCCCGCGGCC chr4:145061881-145061961 55 1.59e-05 AGGGGAGGCA TTTTAAAT GATGCAAGTT chr2:12654974-12655054 20 1.59e-05 GTTTGTTTGG TTTTAAAT AAACTGCAAT chr17:66031760-66031840 60 3.16e-05 TCACCGGGAA ATTTAAAT CGCGCCGGCC chr21:38909264-38909344 19 3.16e-05 agaccgcaca atttaaat tagacccgac chr17:74835896-74835976 39 3.16e-05 attttaatga atttaaat gtaaatagcc chr14:100070924-10007100 16 4.74e-05 TACAGGGCGC TTTTAAAA TGCAGGTACG chr1:224544436-224544516 44 4.74e-05 CCGTAGAGTT TTTTAAAA TATGGACTAC chr16:15737461-15737541 16 4.74e-05 CCTACTTTAT TTTTAAAA ATTAAATGGC chr19:13001810-13001890 56 4.74e-05 ACCTTAGCCC TTTTAAAA GGCAGAGCTG chr7:28961643-28961723 57 4.74e-05 tagattatat ttttaaaa tGGCCATTAC chr1:150208881-150208961 7 4.74e-05 TGGCCG TTTTAAAA GCATAGCCTC chr1:167698189-167698269 12 4.74e-05 ATTACGTGCA TTTTAAAA GATGCTGTTA chr19:2865428-2865508 9 4.74e-05 ctggagtc ttttaaaa attaactgcc chr1:61543115-61543195 46 4.74e-05 GCCAACAGCT TTTTAAAA AATCTCTTCC chrX:40028790-40028870 12 4.74e-05 AAATACGGTG TTTTAAAA AACAGCAGCA chr5:147953945-147954025 50 4.74e-05 ACGTGACAGA TTTTAAAA ATCAacatct chr8:38068330-38068410 59 7.86e-05 GGATGTGTTT TTTTAAAC ATCTGGATAT chr2:38604408-38604488 4 7.86e-05 CCG ATTTAAAA TTAACTCCCC chr2:54787646-54787726 47 7.86e-05 TAAAGTTTAA ATTTAAAA AAAATCATGT chr15:90118462-90118542 13 7.86e-05 CCTCTTTAAA ATTTAAAA CGAAGGCCCA chr7:75164486-75164566 33 7.86e-05 TCGATGAAGT TTTTAAAC ATTTCTGTGG chr6:43597727-43597807 64 7.86e-05 CTGAGTTTGG TTTTAAAC GGCCAAGAC chr6:27760172-27760252 58 7.86e-05 GATTTCAGAT TTTTAAAC GGACACACCG chr17:80476927-80477007 32 7.86e-05 TCGTGTATAT TTTTAAAC TGTGTGCTGA chr5:137514704-137514784 55 7.86e-05 GCAGCGCGTA ATTTAAAA TATTGTATCT chr7:134832200-134832280 31 7.86e-05 CGGAAGCAAT TTTTAAAC TCTGGCCAGG chr21:38337854-38337934 25 7.86e-05 GTCAACTGAA ATTTAAAA GACGCAAAGA chr15:40675130-40675210 67 7.86e-05 GCAGGGAATC TTTTAAAC GAGAGC chr21:46300854-46300934 60 7.86e-05 GGAAGTCAAG ATTTAAAA AGAGGAAATG chr4:3939615-3939695 61 7.86e-05 TCTTTTAATT TTTTAAAC GGAAGAGCCC chrX:153990610-153990690 44 7.86e-05 ctgctggaaa atttaaaa gtcaacatgt chr15:82386177-82386257 40 9.45e-05 aactgatacg ttttgaat tgcatgccgt chr5:156570055-156570135 18 9.45e-05 CTTCGTTTCT TTTTGAAT TAAGGCATAA chr17:57233025-57233105 70 9.45e-05 AAGGATTTAA TTTTGAAT TTT chr12:14518584-14518664 28 9.45e-05 GCGGGTTTGT TTTTGAAT CTgcggaggc chr3:120136302-120136382 42 9.45e-05 ACCAATTCTT TTTTGAAT GTTGCTAAGG chr2:55717829-55717909 25 9.45e-05 CTCCCCAGGA TTTTGAAT TTTGAACTGA chr5:68462882-68462962 64 1.26e-04 GCAGTGCGGG GTTTAAAT CTGAGGCTA chr12:123868449-12386852 22 1.26e-04 CGACGGTCAA ATTTAAAC ACCCCTCCCA chr6:168256626-168256706 65 1.26e-04 ttgcatgaca gtttaaat agtgatga chrX:124288961-124289041 10 1.26e-04 gattggtgc gtttaaat aaatccctga chr11:125757463-12575754 48 1.26e-04 CGCTCTCCGG ATTTAAAC CTCAGCGGTC chr5:126112380-126112460 14 1.57e-04 GGACGTTTAT ATTTGAAT TTCCCTGAAC chr2:144910619-144910699 15 1.57e-04 GATCAGTGCT ATTTGAAT TAGTCAGAGA chr1:35658931-35659011 55 1.57e-04 GCTAGGAGAA ATTTGAAT GGGTATGCCA chr5:176739418-176739498 41 1.57e-04 AAGAAGCAGG TTTCAAAT TTGAAAACCC chr4:79632879-79632959 52 1.57e-04 ATCTGATTGG ATTTGAAT GATGCTTTGA chr19:3506033-3506113 49 1.57e-04 TCCTGTATTG ATTTGAAT CGCGGGAGAC chr15:59397247-59397327 68 1.57e-04 GCGACGCGGT ATTTGAAT CCTGG chr1:197115871-197115951 35 1.57e-04 GCGGCGCTTC ATTTGAAT GATTGCATCC chr5:162887593-162887673 16 1.57e-04 ATGTGGGGAG ATTTGAAT TTGAAACCGG chr10:94352826-94352906 32 1.57e-04 TCTGTCTCTT TTTCAAAT TGAGGCGCCG chr1:36103114-36103194 40 1.57e-04 ACTTTTCATT TTTCAAAT AGTGCTGAAT chr15:65117828-65117908 32 1.57e-04 ACTAGAAATT TTTCAAAT GCTAGAGGCA chr9:108435409-108435489 58 1.57e-04 agttggctac atttgaat ggccaaaact chr1:169452934-169453014 33 1.57e-04 ACAGATCAGC TTTCAAAT ATCAACACTG chr19:7577293-7577373 31 1.57e-04 tgattggccc atttgaat cactcaccga chr3:45133652-45133732 29 1.73e-04 TACTCAGGAC TTTTGAAA AAAAACAAAA chr11:61891403-61891483 69 1.73e-04 GAGCCTTCAG TTTTGAAA ATCA chr3:49333082-49333162 27 1.73e-04 CTGATTCAAA TTTTGAAA CTAAACATAT chr17:39001017-39001097 27 1.73e-04 gaccttaatt ttttgaaa gataactttg chr16:18815554-18815634 61 1.73e-04 GGATGTGATC TTTTGAAA TGTGCCAGAT chr4:110834401-110834481 64 1.73e-04 AGCTGTTTTC TTTTGAAA GTTCAAACT chr15:30918186-30918266 53 1.73e-04 GGGGTCCTGA TTTTGAAA AGAGGAGTGG chr10:33240203-33240283 61 2.04e-04 ATCACACAAA ATTCAAAT AATTCAAGCC chrX:124353869-124353949 64 2.04e-04 ccatggaatt attcaaat aagccaatc chrX:119468636-119468716 65 2.04e-04 ccatgtcatt attcaaat gagccaat chr17:80712974-80713054 36 2.04e-04 gcattggtgg attcaaat atttcacgat chr15:83847772-83847852 72 2.04e-04 ctgtagaatt attcaaat a chr1:231189493-231189573 13 2.04e-04 AGTTGACAAA ATTCAAAT GGAAACAATT chr12:6873558-6873638 6 2.04e-04 GGCTG ATTCAAAT GAGCATTCCA chr20:23400683-23400763 37 2.51e-04 GATCTTTCAC TTTCAAAA GAAAACAACG chr11:46867831-46867911 67 2.51e-04 TTATTGGTCC ATTTGAAA GGCCTG chr6:27862272-27862352 1 2.51e-04 . ATTTGAAA AGCCCGCCAA chrX:89713167-89713247 51 2.51e-04 tgcagcggga atttgaaa gcacaaaacc chr9:140135490-140135570 6 2.51e-04 CAATC ATTTGAAA CACCCAATGG chr7:97990320-97990400 20 2.51e-04 ACAGGTTTAT TTTCAAAA TATCAACAGG chr1:51434443-51434523 2 2.51e-04 T TTTCAAAA AAAGCTGATG chr3:172468386-172468466 14 2.51e-04 CGTTGGGCTT ATTTGAAA CACACGCACA chr3:183087053-183087133 16 2.51e-04 aaaccagccc tttcaaaa gactctacca chr7:133769706-133769786 48 2.51e-04 cgtttgcctt ttttgaac acagtttgaa chr16:20774983-20775063 53 2.51e-04 TTCCTTTCAA TTTCAAAA CTCCTCTATG chr15:67417928-67418008 53 2.51e-04 TTTATTTTTG ATTTGAAA TATGAAAAGC chr2:201390849-201390929 50 2.66e-04 CGGCTGTGGC GTTTAAAC CCAAGCCGCA chr5:159848823-159848903 9 2.66e-04 GAGTTGTG GTTTAAAC CAGGAGTGCG chr12:30916053-30916133 2 3.28e-04 a gtttgaat aattccaata chr22:46692692-46692772 48 3.28e-04 TCGGAGCCCT TTTCAAAC CGACCAATCG chr1:205719387-205719467 48 3.28e-04 TCATTAGTCC GTTTGAAT CATCACGTCT chr17:28019409-28019489 40 3.28e-04 ACGGCTTGTC ATTTGAAC TTTGAATTCA chr11:9595133-9595213 14 3.28e-04 CTCCTTTTTT TTTCAAAC CCGGAGCTGC chr4:111232124-111232204 20 3.28e-04 cacttccctt atttgaac acagtttgaa chr17:38574241-38574321 52 3.28e-04 GCCGGGGTTT GTTTGAAT AAACCAATCA chr1:109419500-109419580 72 3.28e-04 GGCGTTGTCG GTTTGAAT G chr7:67181858-67181938 61 3.28e-04 catttgcctt atttgaac acagtttgaa chr1:244488472-244488552 57 3.28e-04 ggtttgcttt atttgaac atggttcaaa chr20:1448522-1448602 39 3.28e-04 tttctgctcc atttgaac tagccaatcg chr5:73687399-73687479 41 3.28e-04 tgtttgcctt atttgaac ctggtttgaa chr6:139811770-139811850 43 3.28e-04 tatttgcctt atttgaac acagtttgaa chr2:231263561-231263641 26 3.28e-04 tgattggctt gtttgaat aattccatgg chr6:14975784-14975864 37 3.75e-04 ttcgaaccat gttcaaat aatgcagtcc chr9:15293810-15293890 51 3.75e-04 ttggaaccgt gttcaaat aaagcaaact chr6:80714356-80714436 7 3.75e-04 GGGGAA ATTCAAAC GTGTTTGCGG chr11:28129648-28129728 59 3.75e-04 CAACCACAAT ATTCAAAC CCAAGCCACT chr6:27099772-27099852 26 3.75e-04 GCCCGGGCAA ATTCAAAC TGACAACCGC chr1:205720594-205720674 32 3.75e-04 AGACGTGATG ATTCAAAC GGACTAATGA chr9:100807720-100807800 47 3.75e-04 tttgaactgt gttcaaat aagacaaatg chr9:73222974-73223054 15 3.75e-04 ctcaaactgt gttcaaat aaggcaaacg chr15:28539777-28539857 13 3.75e-04 gcccagagtt attcaaac aagccagtca chr8:117887038-117887118 21 3.75e-04 CAAATCCTCG GTTCAAAT CGGCAGGATG chr7:112366220-112366300 64 3.75e-04 ccatggaatt attcaaac aagccaatc chr2:73944205-73944285 6 3.75e-04 accat gttcaaat aaggcaaacg chrX:119376842-119376922 52 3.75e-04 ttgtggaatt attcaaac aagccaatca chr11:119205078-11920515 51 3.75e-04 TTCGGGCGCC ATTCAAAC GGACCAATGA chr5:175612234-175612314 46 3.75e-04 atcagagaat gttcaaat gaacacagga chr20:35464125-35464205 51 3.75e-04 TGATTGGCTA ATTCAAAC CCCAACAGAA chr11:93707066-93707146 71 4.22e-04 ggcagttaat ttttaaag ga chr5:89826104-89826184 31 4.22e-04 ACTTATTTTG GTTTGAAA ATTAACTGAG chr12:64977575-64977655 36 4.22e-04 TCCTGTTTTC TTTTAAAG TTCACTGACA chr2:113522200-113522280 66 4.22e-04 GCTCCTGCGG GTTTGAAA CTCGCTA chr5:134241525-134241605 24 4.22e-04 GCCCATTTCA GTTTGAAA tgttttgttt chr9:38170985-38171065 20 4.22e-04 tgattggcta ttttaaag agagcaaggg chr15:69706624-69706704 8 4.22e-04 TTGGCCC GTTTGAAA TGCGCCAGGC chr13:73301900-73301980 36 4.22e-04 AGGAGTTGCC ATTCGAAT TTCCTACGCG chr12:27856679-27856759 14 4.22e-04 AGGTGGCATC TTTTAAAG TGTTAAGTAA chr12:120315285-12031536 41 4.22e-04 GGTCTTGGAA GTTTGAAA TTGGCGGTTA chr13:53029446-53029526 2 4.22e-04 G GTTTGAAA CCTGCAGACT chr1:1446435-1446515 62 4.22e-04 ccattggcta ttttaaag ggagcaggag chr6:31707525-31707605 70 4.84e-04 AGGGCGGGAA GTTTGAAC GTT chr12:49658615-49658695 71 4.84e-04 GACGAGTTTG GTTTGAAC TT chr20:30327029-30327109 43 4.84e-04 GGCTGCCTGG GTTCAAAA TTTCAACGAT chr1:21113197-21113277 28 5.14e-04 CGCCGGCATC TTTCGAAC CGGCTCCGAA chr1:207865343-207865423 55 5.45e-04 tttgaagaca gttcaaac agttagccac chr17:74261062-74261142 32 5.45e-04 TTCAAGTTGA GTTCAAAC AGGACCACCG chr12:98884916-98884996 59 5.45e-04 ACTTGTTTTT CTTTAAAT CTCGAATCAA chr16:2479141-2479221 73 5.76e-04 AGCGGCCAAT GTTCGAAT chr1:43824541-43824621 45 5.92e-04 GACGGTTGGA TTTTGAAG GAGCCAATAG chr12:77171800-77171880 31 6.23e-04 ggattggcta gtttaaag caaacactcc chr19:21795059-21795139 10 6.23e-04 gctggagtc ctttaaaa attaactgcc chr6:28047880-28047960 59 6.23e-04 cccctgctct ctttaaaa tagccaatcg chr14:54863528-54863608 26 6.70e-04 CCCGCGCGTC TTTCAAAG GTCTTCTAGG chr11:269490-269570 19 7.47e-04 tcagttcctg ttttcaat tcttccgcgt chr19:37262537-37262617 18 7.47e-04 tgaagttatg attcaaag aggccgcgct chr18:12991150-12991230 16 7.78e-04 GGCTTCCTCG CTTCAAAT CCAGGAACGC chr4:175078549-175078629 25 8.25e-04 ACCACTCTTT CTTTGAAA ATAAACTGCA chr4:130014690-130014770 24 8.25e-04 CGCCCTGCGA CTTTGAAA CCGGTGCCCC chr15:41624936-41625016 72 9.17e-04 CTTTGAGGCA TTTTCAAC C chr15:91498524-91498604 11 9.78e-04 GCCGCGCGCC CTTCAAAC CTTTTCTCCC chr19:39616178-39616258 71 1.01e-03 TTTTCCAAAA TTTCCAAT CC chr16:15743906-15743986 62 1.10e-03 GGGAAAAAAG TTTCCAAA CGACGCTGCT chr3:6560639-6560719 50 1.22e-03 attcctgcac ttttcaag ttagccaacc chr5:137673643-137673723 29 1.33e-03 TCCCCCGCGG GTTTCAAG ATGTGCCTCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTTRAAH MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:174139888-174139968 1.6e-05 28_[+1]_44 chr10:63512397-63512477 1.6e-05 8_[+1]_64 chr10:21816924-21817004 1.6e-05 64_[+1]_8 chr6:3160566-3160646 1.6e-05 24_[+1]_48 chr4:144826760-144826840 1.6e-05 47_[+1]_25 chr8:102210813-102210893 1.6e-05 53_[+1]_19 chr20:54967272-54967352 1.6e-05 11_[+1]_61 chr4:144940538-144940618 1.6e-05 49_[+1]_23 chr1:32566993-32567073 1.6e-05 11_[+1]_61 chr16:23690102-23690182 1.6e-05 18_[+1]_54 chr4:145061881-145061961 1.6e-05 54_[+1]_18 chr2:12654974-12655054 1.6e-05 19_[+1]_53 chr17:66031760-66031840 3.2e-05 59_[+1]_13 chr21:38909264-38909344 3.2e-05 18_[+1]_54 chr17:74835896-74835976 3.2e-05 38_[+1]_34 chr14:100070924-10007100 4.7e-05 15_[+1]_57 chr1:224544436-224544516 4.7e-05 43_[+1]_29 chr16:15737461-15737541 4.7e-05 15_[+1]_57 chr19:13001810-13001890 4.7e-05 55_[+1]_17 chr7:28961643-28961723 4.7e-05 56_[+1]_16 chr1:150208881-150208961 4.7e-05 6_[+1]_66 chr1:167698189-167698269 4.7e-05 11_[+1]_61 chr19:2865428-2865508 4.7e-05 8_[+1]_64 chr1:61543115-61543195 4.7e-05 45_[+1]_27 chrX:40028790-40028870 4.7e-05 11_[+1]_61 chr5:147953945-147954025 4.7e-05 49_[+1]_23 chr8:38068330-38068410 7.9e-05 58_[+1]_14 chr2:38604408-38604488 7.9e-05 3_[+1]_69 chr2:54787646-54787726 7.9e-05 46_[+1]_26 chr15:90118462-90118542 7.9e-05 12_[+1]_60 chr7:75164486-75164566 7.9e-05 32_[+1]_40 chr6:43597727-43597807 7.9e-05 63_[+1]_9 chr6:27760172-27760252 7.9e-05 57_[+1]_15 chr17:80476927-80477007 7.9e-05 31_[+1]_41 chr5:137514704-137514784 7.9e-05 54_[+1]_18 chr7:134832200-134832280 7.9e-05 30_[+1]_42 chr21:38337854-38337934 7.9e-05 24_[+1]_48 chr15:40675130-40675210 7.9e-05 66_[+1]_6 chr21:46300854-46300934 7.9e-05 59_[+1]_13 chr4:3939615-3939695 7.9e-05 60_[+1]_12 chrX:153990610-153990690 7.9e-05 43_[+1]_29 chr15:82386177-82386257 9.5e-05 39_[+1]_33 chr5:156570055-156570135 9.5e-05 17_[+1]_55 chr17:57233025-57233105 9.5e-05 69_[+1]_3 chr12:14518584-14518664 9.5e-05 27_[+1]_45 chr3:120136302-120136382 9.5e-05 41_[+1]_31 chr2:55717829-55717909 9.5e-05 24_[+1]_48 chr5:68462882-68462962 0.00013 63_[+1]_9 chr12:123868449-12386852 0.00013 21_[+1]_51 chr6:168256626-168256706 0.00013 64_[+1]_8 chrX:124288961-124289041 0.00013 9_[+1]_63 chr11:125757463-12575754 0.00013 47_[+1]_25 chr5:126112380-126112460 0.00016 13_[+1]_59 chr2:144910619-144910699 0.00016 14_[+1]_58 chr1:35658931-35659011 0.00016 54_[+1]_18 chr5:176739418-176739498 0.00016 40_[+1]_32 chr4:79632879-79632959 0.00016 51_[+1]_21 chr19:3506033-3506113 0.00016 48_[+1]_24 chr15:59397247-59397327 0.00016 67_[+1]_5 chr1:197115871-197115951 0.00016 34_[+1]_38 chr5:162887593-162887673 0.00016 15_[+1]_57 chr10:94352826-94352906 0.00016 31_[+1]_41 chr1:36103114-36103194 0.00016 39_[+1]_33 chr15:65117828-65117908 0.00016 31_[+1]_41 chr9:108435409-108435489 0.00016 57_[+1]_15 chr1:169452934-169453014 0.00016 32_[+1]_40 chr19:7577293-7577373 0.00016 30_[+1]_42 chr3:45133652-45133732 0.00017 28_[+1]_44 chr11:61891403-61891483 0.00017 68_[+1]_4 chr3:49333082-49333162 0.00017 26_[+1]_46 chr17:39001017-39001097 0.00017 26_[+1]_46 chr16:18815554-18815634 0.00017 60_[+1]_12 chr4:110834401-110834481 0.00017 63_[+1]_9 chr15:30918186-30918266 0.00017 52_[+1]_20 chr10:33240203-33240283 0.0002 60_[+1]_12 chrX:124353869-124353949 0.0002 63_[+1]_9 chrX:119468636-119468716 0.0002 64_[+1]_8 chr17:80712974-80713054 0.0002 35_[+1]_37 chr15:83847772-83847852 0.0002 71_[+1]_1 chr1:231189493-231189573 0.0002 12_[+1]_60 chr12:6873558-6873638 0.0002 5_[+1]_67 chr20:23400683-23400763 0.00025 36_[+1]_36 chr11:46867831-46867911 0.00025 66_[+1]_6 chr6:27862272-27862352 0.00025 [+1]_72 chrX:89713167-89713247 0.00025 50_[+1]_22 chr9:140135490-140135570 0.00025 5_[+1]_67 chr7:97990320-97990400 0.00025 19_[+1]_53 chr1:51434443-51434523 0.00025 1_[+1]_71 chr3:172468386-172468466 0.00025 13_[+1]_59 chr3:183087053-183087133 0.00025 15_[+1]_57 chr7:133769706-133769786 0.00025 47_[+1]_25 chr16:20774983-20775063 0.00025 52_[+1]_20 chr15:67417928-67418008 0.00025 52_[+1]_20 chr2:201390849-201390929 0.00027 49_[+1]_23 chr5:159848823-159848903 0.00027 8_[+1]_64 chr12:30916053-30916133 0.00033 1_[+1]_71 chr22:46692692-46692772 0.00033 47_[+1]_25 chr1:205719387-205719467 0.00033 47_[+1]_25 chr17:28019409-28019489 0.00033 39_[+1]_33 chr11:9595133-9595213 0.00033 13_[+1]_59 chr4:111232124-111232204 0.00033 19_[+1]_53 chr17:38574241-38574321 0.00033 51_[+1]_21 chr1:109419500-109419580 0.00033 71_[+1]_1 chr7:67181858-67181938 0.00033 60_[+1]_12 chr1:244488472-244488552 0.00033 56_[+1]_16 chr20:1448522-1448602 0.00033 38_[+1]_34 chr5:73687399-73687479 0.00033 40_[+1]_32 chr6:139811770-139811850 0.00033 42_[+1]_30 chr2:231263561-231263641 0.00033 25_[+1]_47 chr6:14975784-14975864 0.00037 36_[+1]_36 chr9:15293810-15293890 0.00037 50_[+1]_22 chr6:80714356-80714436 0.00037 6_[+1]_66 chr11:28129648-28129728 0.00037 58_[+1]_14 chr6:27099772-27099852 0.00037 25_[+1]_47 chr1:205720594-205720674 0.00037 31_[+1]_41 chr9:100807720-100807800 0.00037 46_[+1]_26 chr9:73222974-73223054 0.00037 14_[+1]_58 chr15:28539777-28539857 0.00037 12_[+1]_60 chr8:117887038-117887118 0.00037 20_[+1]_52 chr7:112366220-112366300 0.00037 63_[+1]_9 chr2:73944205-73944285 0.00037 5_[+1]_67 chrX:119376842-119376922 0.00037 51_[+1]_21 chr11:119205078-11920515 0.00037 50_[+1]_22 chr5:175612234-175612314 0.00037 45_[+1]_27 chr20:35464125-35464205 0.00037 50_[+1]_22 chr11:93707066-93707146 0.00042 70_[+1]_2 chr5:89826104-89826184 0.00042 30_[+1]_42 chr12:64977575-64977655 0.00042 35_[+1]_37 chr2:113522200-113522280 0.00042 65_[+1]_7 chr5:134241525-134241605 0.00042 23_[+1]_49 chr9:38170985-38171065 0.00042 19_[+1]_53 chr15:69706624-69706704 0.00042 7_[+1]_65 chr13:73301900-73301980 0.00042 35_[+1]_37 chr12:27856679-27856759 0.00042 13_[+1]_59 chr12:120315285-12031536 0.00042 40_[+1]_32 chr13:53029446-53029526 0.00042 1_[+1]_71 chr1:1446435-1446515 0.00042 61_[+1]_11 chr6:31707525-31707605 0.00048 69_[+1]_3 chr12:49658615-49658695 0.00048 70_[+1]_2 chr20:30327029-30327109 0.00048 42_[+1]_30 chr1:21113197-21113277 0.00051 27_[+1]_45 chr1:207865343-207865423 0.00055 54_[+1]_18 chr17:74261062-74261142 0.00055 31_[+1]_41 chr12:98884916-98884996 0.00055 58_[+1]_14 chr16:2479141-2479221 0.00058 72_[+1] chr1:43824541-43824621 0.00059 44_[+1]_28 chr12:77171800-77171880 0.00062 30_[+1]_42 chr19:21795059-21795139 0.00062 9_[+1]_63 chr6:28047880-28047960 0.00062 58_[+1]_14 chr14:54863528-54863608 0.00067 25_[+1]_47 chr11:269490-269570 0.00075 18_[+1]_54 chr19:37262537-37262617 0.00075 17_[+1]_55 chr18:12991150-12991230 0.00078 15_[+1]_57 chr4:175078549-175078629 0.00082 24_[+1]_48 chr4:130014690-130014770 0.00082 23_[+1]_49 chr15:41624936-41625016 0.00092 71_[+1]_1 chr15:91498524-91498604 0.00098 10_[+1]_62 chr19:39616178-39616258 0.001 70_[+1]_2 chr16:15743906-15743986 0.0011 61_[+1]_11 chr3:6560639-6560719 0.0012 49_[+1]_23 chr5:137673643-137673723 0.0013 28_[+1]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTTRAAH MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WTTTRAAH width=8 seqs=161 chr4:174139888-174139968 ( 29) TTTTAAAT 1 chr10:63512397-63512477 ( 9) TTTTAAAT 1 chr10:21816924-21817004 ( 65) TTTTAAAT 1 chr6:3160566-3160646 ( 25) TTTTAAAT 1 chr4:144826760-144826840 ( 48) TTTTAAAT 1 chr8:102210813-102210893 ( 54) TTTTAAAT 1 chr20:54967272-54967352 ( 12) TTTTAAAT 1 chr4:144940538-144940618 ( 50) TTTTAAAT 1 chr1:32566993-32567073 ( 12) TTTTAAAT 1 chr16:23690102-23690182 ( 19) TTTTAAAT 1 chr4:145061881-145061961 ( 55) TTTTAAAT 1 chr2:12654974-12655054 ( 20) TTTTAAAT 1 chr17:66031760-66031840 ( 60) ATTTAAAT 1 chr21:38909264-38909344 ( 19) ATTTAAAT 1 chr17:74835896-74835976 ( 39) ATTTAAAT 1 chr14:100070924-10007100 ( 16) TTTTAAAA 1 chr1:224544436-224544516 ( 44) TTTTAAAA 1 chr16:15737461-15737541 ( 16) TTTTAAAA 1 chr19:13001810-13001890 ( 56) TTTTAAAA 1 chr7:28961643-28961723 ( 57) TTTTAAAA 1 chr1:150208881-150208961 ( 7) TTTTAAAA 1 chr1:167698189-167698269 ( 12) TTTTAAAA 1 chr19:2865428-2865508 ( 9) TTTTAAAA 1 chr1:61543115-61543195 ( 46) TTTTAAAA 1 chrX:40028790-40028870 ( 12) TTTTAAAA 1 chr5:147953945-147954025 ( 50) TTTTAAAA 1 chr8:38068330-38068410 ( 59) TTTTAAAC 1 chr2:38604408-38604488 ( 4) ATTTAAAA 1 chr2:54787646-54787726 ( 47) ATTTAAAA 1 chr15:90118462-90118542 ( 13) ATTTAAAA 1 chr7:75164486-75164566 ( 33) TTTTAAAC 1 chr6:43597727-43597807 ( 64) TTTTAAAC 1 chr6:27760172-27760252 ( 58) TTTTAAAC 1 chr17:80476927-80477007 ( 32) TTTTAAAC 1 chr5:137514704-137514784 ( 55) ATTTAAAA 1 chr7:134832200-134832280 ( 31) TTTTAAAC 1 chr21:38337854-38337934 ( 25) ATTTAAAA 1 chr15:40675130-40675210 ( 67) TTTTAAAC 1 chr21:46300854-46300934 ( 60) ATTTAAAA 1 chr4:3939615-3939695 ( 61) TTTTAAAC 1 chrX:153990610-153990690 ( 44) ATTTAAAA 1 chr15:82386177-82386257 ( 40) TTTTGAAT 1 chr5:156570055-156570135 ( 18) TTTTGAAT 1 chr17:57233025-57233105 ( 70) TTTTGAAT 1 chr12:14518584-14518664 ( 28) TTTTGAAT 1 chr3:120136302-120136382 ( 42) TTTTGAAT 1 chr2:55717829-55717909 ( 25) TTTTGAAT 1 chr5:68462882-68462962 ( 64) GTTTAAAT 1 chr12:123868449-12386852 ( 22) ATTTAAAC 1 chr6:168256626-168256706 ( 65) GTTTAAAT 1 chrX:124288961-124289041 ( 10) GTTTAAAT 1 chr11:125757463-12575754 ( 48) ATTTAAAC 1 chr5:126112380-126112460 ( 14) ATTTGAAT 1 chr2:144910619-144910699 ( 15) ATTTGAAT 1 chr1:35658931-35659011 ( 55) ATTTGAAT 1 chr5:176739418-176739498 ( 41) TTTCAAAT 1 chr4:79632879-79632959 ( 52) ATTTGAAT 1 chr19:3506033-3506113 ( 49) ATTTGAAT 1 chr15:59397247-59397327 ( 68) ATTTGAAT 1 chr1:197115871-197115951 ( 35) ATTTGAAT 1 chr5:162887593-162887673 ( 16) ATTTGAAT 1 chr10:94352826-94352906 ( 32) TTTCAAAT 1 chr1:36103114-36103194 ( 40) TTTCAAAT 1 chr15:65117828-65117908 ( 32) TTTCAAAT 1 chr9:108435409-108435489 ( 58) ATTTGAAT 1 chr1:169452934-169453014 ( 33) TTTCAAAT 1 chr19:7577293-7577373 ( 31) ATTTGAAT 1 chr3:45133652-45133732 ( 29) TTTTGAAA 1 chr11:61891403-61891483 ( 69) TTTTGAAA 1 chr3:49333082-49333162 ( 27) TTTTGAAA 1 chr17:39001017-39001097 ( 27) TTTTGAAA 1 chr16:18815554-18815634 ( 61) TTTTGAAA 1 chr4:110834401-110834481 ( 64) TTTTGAAA 1 chr15:30918186-30918266 ( 53) TTTTGAAA 1 chr10:33240203-33240283 ( 61) ATTCAAAT 1 chrX:124353869-124353949 ( 64) ATTCAAAT 1 chrX:119468636-119468716 ( 65) ATTCAAAT 1 chr17:80712974-80713054 ( 36) ATTCAAAT 1 chr15:83847772-83847852 ( 72) ATTCAAAT 1 chr1:231189493-231189573 ( 13) ATTCAAAT 1 chr12:6873558-6873638 ( 6) ATTCAAAT 1 chr20:23400683-23400763 ( 37) TTTCAAAA 1 chr11:46867831-46867911 ( 67) ATTTGAAA 1 chr6:27862272-27862352 ( 1) ATTTGAAA 1 chrX:89713167-89713247 ( 51) ATTTGAAA 1 chr9:140135490-140135570 ( 6) ATTTGAAA 1 chr7:97990320-97990400 ( 20) TTTCAAAA 1 chr1:51434443-51434523 ( 2) TTTCAAAA 1 chr3:172468386-172468466 ( 14) ATTTGAAA 1 chr3:183087053-183087133 ( 16) TTTCAAAA 1 chr7:133769706-133769786 ( 48) TTTTGAAC 1 chr16:20774983-20775063 ( 53) TTTCAAAA 1 chr15:67417928-67418008 ( 53) ATTTGAAA 1 chr2:201390849-201390929 ( 50) GTTTAAAC 1 chr5:159848823-159848903 ( 9) GTTTAAAC 1 chr12:30916053-30916133 ( 2) GTTTGAAT 1 chr22:46692692-46692772 ( 48) TTTCAAAC 1 chr1:205719387-205719467 ( 48) GTTTGAAT 1 chr17:28019409-28019489 ( 40) ATTTGAAC 1 chr11:9595133-9595213 ( 14) TTTCAAAC 1 chr4:111232124-111232204 ( 20) ATTTGAAC 1 chr17:38574241-38574321 ( 52) GTTTGAAT 1 chr1:109419500-109419580 ( 72) GTTTGAAT 1 chr7:67181858-67181938 ( 61) ATTTGAAC 1 chr1:244488472-244488552 ( 57) ATTTGAAC 1 chr20:1448522-1448602 ( 39) ATTTGAAC 1 chr5:73687399-73687479 ( 41) ATTTGAAC 1 chr6:139811770-139811850 ( 43) ATTTGAAC 1 chr2:231263561-231263641 ( 26) GTTTGAAT 1 chr6:14975784-14975864 ( 37) GTTCAAAT 1 chr9:15293810-15293890 ( 51) GTTCAAAT 1 chr6:80714356-80714436 ( 7) ATTCAAAC 1 chr11:28129648-28129728 ( 59) ATTCAAAC 1 chr6:27099772-27099852 ( 26) ATTCAAAC 1 chr1:205720594-205720674 ( 32) ATTCAAAC 1 chr9:100807720-100807800 ( 47) GTTCAAAT 1 chr9:73222974-73223054 ( 15) GTTCAAAT 1 chr15:28539777-28539857 ( 13) ATTCAAAC 1 chr8:117887038-117887118 ( 21) GTTCAAAT 1 chr7:112366220-112366300 ( 64) ATTCAAAC 1 chr2:73944205-73944285 ( 6) GTTCAAAT 1 chrX:119376842-119376922 ( 52) ATTCAAAC 1 chr11:119205078-11920515 ( 51) ATTCAAAC 1 chr5:175612234-175612314 ( 46) GTTCAAAT 1 chr20:35464125-35464205 ( 51) ATTCAAAC 1 chr11:93707066-93707146 ( 71) TTTTAAAG 1 chr5:89826104-89826184 ( 31) GTTTGAAA 1 chr12:64977575-64977655 ( 36) TTTTAAAG 1 chr2:113522200-113522280 ( 66) GTTTGAAA 1 chr5:134241525-134241605 ( 24) GTTTGAAA 1 chr9:38170985-38171065 ( 20) TTTTAAAG 1 chr15:69706624-69706704 ( 8) GTTTGAAA 1 chr13:73301900-73301980 ( 36) ATTCGAAT 1 chr12:27856679-27856759 ( 14) TTTTAAAG 1 chr12:120315285-12031536 ( 41) GTTTGAAA 1 chr13:53029446-53029526 ( 2) GTTTGAAA 1 chr1:1446435-1446515 ( 62) TTTTAAAG 1 chr6:31707525-31707605 ( 70) GTTTGAAC 1 chr12:49658615-49658695 ( 71) GTTTGAAC 1 chr20:30327029-30327109 ( 43) GTTCAAAA 1 chr1:21113197-21113277 ( 28) TTTCGAAC 1 chr1:207865343-207865423 ( 55) GTTCAAAC 1 chr17:74261062-74261142 ( 32) GTTCAAAC 1 chr12:98884916-98884996 ( 59) CTTTAAAT 1 chr16:2479141-2479221 ( 73) GTTCGAAT 1 chr1:43824541-43824621 ( 45) TTTTGAAG 1 chr12:77171800-77171880 ( 31) GTTTAAAG 1 chr19:21795059-21795139 ( 10) CTTTAAAA 1 chr6:28047880-28047960 ( 59) CTTTAAAA 1 chr14:54863528-54863608 ( 26) TTTCAAAG 1 chr11:269490-269570 ( 19) TTTTCAAT 1 chr19:37262537-37262617 ( 18) ATTCAAAG 1 chr18:12991150-12991230 ( 16) CTTCAAAT 1 chr4:175078549-175078629 ( 25) CTTTGAAA 1 chr4:130014690-130014770 ( 24) CTTTGAAA 1 chr15:41624936-41625016 ( 72) TTTTCAAC 1 chr15:91498524-91498604 ( 11) CTTCAAAC 1 chr19:39616178-39616258 ( 71) TTTCCAAT 1 chr16:15743906-15743986 ( 62) TTTCCAAA 1 chr3:6560639-6560719 ( 50) TTTTCAAG 1 chr5:137673643-137673723 ( 29) GTTTCAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTTRAAH MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.76703 E= 4.6e-114 39 -251 -38 79 -1397 -1397 -1397 199 -1397 -1397 -1397 199 -1397 24 -1397 149 130 -273 47 -1397 200 -1397 -1397 -1397 200 -1397 -1397 -1397 25 -6 -188 66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTTRAAH MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 161 E= 4.6e-114 0.329193 0.043478 0.192547 0.434783 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.291925 0.000000 0.708075 0.614907 0.037267 0.347826 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.298137 0.236025 0.068323 0.397516 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTTRAAH MEME-1 regular expression -------------------------------------------------------------------------------- [TA]TT[TC][AG]AA[TAC] -------------------------------------------------------------------------------- Time 5.00 secs. ******************************************************************************** ******************************************************************************** MOTIF RCCAATCA MEME-2 width = 8 sites = 54 llr = 448 E-value = 7.2e-021 ******************************************************************************** -------------------------------------------------------------------------------- Motif RCCAATCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 4::a9::7 pos.-specific C :aa::181 probability G 5:::1:22 matrix T 1::::9:: bits 2.0 *** 1.8 *** 1.6 ***** 1.4 ****** Relative 1.2 ****** Entropy 1.0 ****** (12.0 bits) 0.8 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCCAATCA consensus A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCCAATCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:14975784-14975864 5 1.49e-05 tttg gccaatca aatgtaacca chr9:15293810-15293890 1 1.49e-05 . gccaatca ccgagttttg chr19:1507845-1507925 20 1.49e-05 TCTGTCAGTA GCCAATCA GGATGAGGAG chr6:31707525-31707605 3 1.49e-05 GC GCCAATCA AATCCCAGAA chr17:74261062-74261142 53 1.49e-05 ACCACCGGAG GCCAATCA GAGTGCGCGG chr14:102276103-10227618 26 1.49e-05 GCAGCTTCCG GCCAATCA GCGAGCTTCA chr8:125538327-125538407 18 1.49e-05 acaatacata gccaatca ctaaccaatg chr16:23690102-23690182 34 1.49e-05 AATCCCCGCG GCCAATCA GTGGCGCGCA chr9:100807720-100807800 15 1.49e-05 tgagtttttg gccaatca aatgtagcca chrX:119376842-119376922 62 1.49e-05 attcaaacaa gccaatca tatccttcca chr3:156837357-156837437 73 2.97e-05 ctccccatca accaatca chr9:37465699-37465779 72 2.97e-05 GTTCGCTGCA ACCAATCA A chr18:12991150-12991230 43 2.97e-05 CGCTGTCCCC ACCAATCA CCGGGCTTCT chr17:38574241-38574321 62 2.97e-05 GTTTGAATAA ACCAATCA GGTTAGGGAG chr3:127309622-127309702 66 2.97e-05 AGTGGGAGAG ACCAATCA AATTCCC chr3:172468386-172468466 32 2.97e-05 CACACGCACA ACCAATCA AGCGGCGCCT chr20:814299-814379 4 2.97e-05 GGA ACCAATCA GGAAGTCCGG chr15:30918186-30918266 71 2.97e-05 AGAGGAGTGG ACCAATCA GA chr16:2479141-2479221 56 2.97e-05 CGCGGGTTCC ACCAATCA GCGGCCAATG chr19:7577293-7577373 56 2.97e-05 cgagttgtgg accaatca ctgtgcccag chr17:66031760-66031840 32 4.47e-05 GCTCGAACCA GCCAATCG GAATGCGGAG chr6:27775818-27775898 64 4.47e-05 TAAAACGTAA GCCAATCG CACAGCTTC chr6:28047880-28047960 69 4.47e-05 ctttaaaata gccaatcg gaat chr1:197115871-197115951 57 4.47e-05 GCATCCGGCC GCCAATCG CTATCTGCGG chr20:1448522-1448602 49 4.47e-05 atttgaacta gccaatcg ggattagctt chr7:30066410-30066490 2 5.98e-05 A GCCAATGA CGCTGCAACG chr15:90118462-90118542 32 5.98e-05 GAAGGCCCAG GCCAATGA ATGCTAAGCT chr15:59397247-59397327 10 5.98e-05 CTTGTGTTG GCCAATGA GAACAGCGAC chr22:46692692-46692772 58 7.47e-05 TTTCAAACCG ACCAATCG GCAACCCGCG chr6:43597727-43597807 39 7.47e-05 TTGAAGCAGA ACCAATCG GGAAGAACTG chr11:118966347-11896642 63 1.19e-04 CGCTGATGTA GCCAATCC TTGTAAAGCG chr15:75445666-75445746 37 1.19e-04 CTGAAAGTCA GCCAATCC CTAACTGCCA chr12:64977575-64977655 10 1.19e-04 TTCTTGTCC TCCAATCA CGTCCACTTC chr2:234763288-234763368 27 1.19e-04 CCACCTTCCG GCCAATCC ACTCCCGAGT chr11:119205078-11920515 61 1.19e-04 ATTCAAACGG ACCAATGA GTGATCGACG chr10:22519487-22519567 50 1.19e-04 CGCGTCTTGG TCCAATCA GCATTTTGAG chr1:21113197-21113277 6 1.64e-04 ccgcA GCCAGTCA CCGCCGCCGG chr5:162887593-162887673 70 1.64e-04 GTCGAGGAGT GCCAGTCA CCT chr3:6560639-6560719 61 1.64e-04 tttcaagtta gccaacca ggttcagctt chr9:73222974-73223054 43 1.64e-04 ctgagctgta accaatcc agctgtttct chr15:28539777-28539857 23 1.64e-04 attcaaacaa gccagtca catcttccca chr2:73944205-73944285 34 1.64e-04 tcgagctgga accaatcc ggctgtttct chr5:68462882-68462962 7 1.94e-04 GCAGCC GCCAATGG GAAGGGAGTG chr17:2304981-2305061 21 1.94e-04 CGGGCCGCGA GCCAATGG GCGGGCAGGA chr1:43824541-43824621 10 1.94e-04 GCCGGAGAG GCCAATGG GCTAGGGCAA chr1:88292434-88292514 41 1.94e-04 AGCAATTCTA GCCAATGG GCTTTTGCGT chr15:65117828-65117908 58 1.94e-04 CAGAAAATCA CCCAATCA CCGACTGGAT chr2:242699945-242700025 1 1.94e-04 . cccaatca gtcaaaggcc chr3:183087053-183087133 43 2.23e-04 actgatatta accaacca cccaacactg chr2:172370384-172370464 35 2.23e-04 tgatatgcag accaacca attagggttc chr17:47468068-47468148 65 2.23e-04 AGCCGTGAAC ACCAACCA AGCACAGC chr14:54863528-54863608 45 2.23e-04 TCTTCTAGGA ACCAGTCA GCGATTAGAG chr8:66546565-66546645 9 2.83e-04 GGGACTGA TCCAATGA GGACCCAGGA chr1:205720594-205720674 73 2.83e-04 GGCAGAAGTC TCCAATGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCCAATCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:14975784-14975864 1.5e-05 4_[+2]_68 chr9:15293810-15293890 1.5e-05 [+2]_72 chr19:1507845-1507925 1.5e-05 19_[+2]_53 chr6:31707525-31707605 1.5e-05 2_[+2]_70 chr17:74261062-74261142 1.5e-05 52_[+2]_20 chr14:102276103-10227618 1.5e-05 25_[+2]_47 chr8:125538327-125538407 1.5e-05 17_[+2]_55 chr16:23690102-23690182 1.5e-05 33_[+2]_39 chr9:100807720-100807800 1.5e-05 14_[+2]_58 chrX:119376842-119376922 1.5e-05 61_[+2]_11 chr3:156837357-156837437 3e-05 72_[+2] chr9:37465699-37465779 3e-05 71_[+2]_1 chr18:12991150-12991230 3e-05 42_[+2]_30 chr17:38574241-38574321 3e-05 61_[+2]_11 chr3:127309622-127309702 3e-05 65_[+2]_7 chr3:172468386-172468466 3e-05 31_[+2]_41 chr20:814299-814379 3e-05 3_[+2]_69 chr15:30918186-30918266 3e-05 70_[+2]_2 chr16:2479141-2479221 3e-05 55_[+2]_17 chr19:7577293-7577373 3e-05 55_[+2]_17 chr17:66031760-66031840 4.5e-05 31_[+2]_41 chr6:27775818-27775898 4.5e-05 63_[+2]_9 chr6:28047880-28047960 4.5e-05 68_[+2]_4 chr1:197115871-197115951 4.5e-05 56_[+2]_16 chr20:1448522-1448602 4.5e-05 48_[+2]_24 chr7:30066410-30066490 6e-05 1_[+2]_71 chr15:90118462-90118542 6e-05 31_[+2]_41 chr15:59397247-59397327 6e-05 9_[+2]_63 chr22:46692692-46692772 7.5e-05 57_[+2]_15 chr6:43597727-43597807 7.5e-05 38_[+2]_34 chr11:118966347-11896642 0.00012 62_[+2]_10 chr15:75445666-75445746 0.00012 36_[+2]_36 chr12:64977575-64977655 0.00012 9_[+2]_63 chr2:234763288-234763368 0.00012 26_[+2]_46 chr11:119205078-11920515 0.00012 60_[+2]_12 chr10:22519487-22519567 0.00012 49_[+2]_23 chr1:21113197-21113277 0.00016 5_[+2]_67 chr5:162887593-162887673 0.00016 69_[+2]_3 chr3:6560639-6560719 0.00016 60_[+2]_12 chr9:73222974-73223054 0.00016 42_[+2]_30 chr15:28539777-28539857 0.00016 22_[+2]_50 chr2:73944205-73944285 0.00016 33_[+2]_39 chr5:68462882-68462962 0.00019 6_[+2]_66 chr17:2304981-2305061 0.00019 20_[+2]_52 chr1:43824541-43824621 0.00019 9_[+2]_63 chr1:88292434-88292514 0.00019 40_[+2]_32 chr15:65117828-65117908 0.00019 57_[+2]_15 chr2:242699945-242700025 0.00019 [+2]_72 chr3:183087053-183087133 0.00022 42_[+2]_30 chr2:172370384-172370464 0.00022 34_[+2]_38 chr17:47468068-47468148 0.00022 64_[+2]_8 chr14:54863528-54863608 0.00022 44_[+2]_28 chr8:66546565-66546645 0.00028 8_[+2]_64 chr1:205720594-205720674 0.00028 72_[+2] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCCAATCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RCCAATCA width=8 seqs=54 chr6:14975784-14975864 ( 5) GCCAATCA 1 chr9:15293810-15293890 ( 1) GCCAATCA 1 chr19:1507845-1507925 ( 20) GCCAATCA 1 chr6:31707525-31707605 ( 3) GCCAATCA 1 chr17:74261062-74261142 ( 53) GCCAATCA 1 chr14:102276103-10227618 ( 26) GCCAATCA 1 chr8:125538327-125538407 ( 18) GCCAATCA 1 chr16:23690102-23690182 ( 34) GCCAATCA 1 chr9:100807720-100807800 ( 15) GCCAATCA 1 chrX:119376842-119376922 ( 62) GCCAATCA 1 chr3:156837357-156837437 ( 73) ACCAATCA 1 chr9:37465699-37465779 ( 72) ACCAATCA 1 chr18:12991150-12991230 ( 43) ACCAATCA 1 chr17:38574241-38574321 ( 62) ACCAATCA 1 chr3:127309622-127309702 ( 66) ACCAATCA 1 chr3:172468386-172468466 ( 32) ACCAATCA 1 chr20:814299-814379 ( 4) ACCAATCA 1 chr15:30918186-30918266 ( 71) ACCAATCA 1 chr16:2479141-2479221 ( 56) ACCAATCA 1 chr19:7577293-7577373 ( 56) ACCAATCA 1 chr17:66031760-66031840 ( 32) GCCAATCG 1 chr6:27775818-27775898 ( 64) GCCAATCG 1 chr6:28047880-28047960 ( 69) GCCAATCG 1 chr1:197115871-197115951 ( 57) GCCAATCG 1 chr20:1448522-1448602 ( 49) GCCAATCG 1 chr7:30066410-30066490 ( 2) GCCAATGA 1 chr15:90118462-90118542 ( 32) GCCAATGA 1 chr15:59397247-59397327 ( 10) GCCAATGA 1 chr22:46692692-46692772 ( 58) ACCAATCG 1 chr6:43597727-43597807 ( 39) ACCAATCG 1 chr11:118966347-11896642 ( 63) GCCAATCC 1 chr15:75445666-75445746 ( 37) GCCAATCC 1 chr12:64977575-64977655 ( 10) TCCAATCA 1 chr2:234763288-234763368 ( 27) GCCAATCC 1 chr11:119205078-11920515 ( 61) ACCAATGA 1 chr10:22519487-22519567 ( 50) TCCAATCA 1 chr1:21113197-21113277 ( 6) GCCAGTCA 1 chr5:162887593-162887673 ( 70) GCCAGTCA 1 chr3:6560639-6560719 ( 61) GCCAACCA 1 chr9:73222974-73223054 ( 43) ACCAATCC 1 chr15:28539777-28539857 ( 23) GCCAGTCA 1 chr2:73944205-73944285 ( 34) ACCAATCC 1 chr5:68462882-68462962 ( 7) GCCAATGG 1 chr17:2304981-2305061 ( 21) GCCAATGG 1 chr1:43824541-43824621 ( 10) GCCAATGG 1 chr1:88292434-88292514 ( 41) GCCAATGG 1 chr15:65117828-65117908 ( 58) CCCAATCA 1 chr2:242699945-242700025 ( 1) CCCAATCA 1 chr3:183087053-183087133 ( 43) ACCAACCA 1 chr2:172370384-172370464 ( 35) ACCAACCA 1 chr17:47468068-47468148 ( 65) ACCAACCA 1 chr14:54863528-54863608 ( 45) ACCAGTCA 1 chr8:66546565-66546645 ( 9) TCCAATGA 1 chr1:205720594-205720674 ( 73) TCCAATGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCCAATCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0499 E= 7.2e-021 49 -274 110 -176 -1240 202 -1240 -1240 -1240 202 -1240 -1240 200 -1240 -1240 -1240 189 -1240 -176 -1240 -1240 -174 -1240 188 -1240 172 -44 -1240 149 -141 -30 -1240 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCCAATCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 54 E= 7.2e-021 0.351852 0.037037 0.537037 0.074074 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.925926 0.000000 0.074074 0.000000 0.000000 0.074074 0.000000 0.925926 0.000000 0.814815 0.185185 0.000000 0.703704 0.092593 0.203704 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCCAATCA MEME-2 regular expression -------------------------------------------------------------------------------- [GA]CCAATC[AG] -------------------------------------------------------------------------------- Time 8.51 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGATTGG MEME-3 width = 8 sites = 46 llr = 385 E-value = 9.4e-013 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGATTGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::a:1:: pos.-specific C 732:1::: probability G 318:::aa matrix T :7::99:: bits 2.0 * ** 1.8 * ** 1.6 * *** 1.4 ***** Relative 1.2 ****** Entropy 1.0 * ****** (12.1 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTGATTGG consensus GCC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGATTGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:10679842-10679922 40 1.56e-05 CGCGTCGCTC CTGATTGG TCAGAGTGTG chr20:30327029-30327109 13 1.56e-05 TCCCGGCGCT CTGATTGG TGCATTCGAC chr17:43025148-43025228 41 1.56e-05 GTCCGTATCG CTGATTGG CTGTTTCCTA chr4:79632879-79632959 44 1.56e-05 TGTGATTTAT CTGATTGG ATTTGAATGA chr9:38170985-38171065 9 1.56e-05 gctaattt ctgattgg ctattttaaa chr5:137514704-137514784 27 1.56e-05 GCTTCCCTAT CTGATTGG CCGAACGAAC chr22:18484506-18484586 53 1.56e-05 CGGGAAAGAA CTGATTGG TTGGGAATCT chr4:174255733-174255813 55 1.56e-05 CTGCTCGATC CTGATTGG CGGCGGGAAG chr7:67181858-67181938 32 1.56e-05 acagaaatag ctgattgg tcacagctta chr19:7577293-7577373 20 1.56e-05 AAGGAACAGG ctgattgg cccatttgaa chr5:73687399-73687479 12 1.56e-05 tagaaacagc ctgattgg ttacagctct chr20:35464125-35464205 40 1.56e-05 AAGAGGGATG CTGATTGG CTAATTCAAA chr6:111137194-111137274 19 3.15e-05 CTCTTGATTG GTGATTGG ATGTGCTCGG chr17:80712974-80713054 56 3.15e-05 ttcacgattg gtgattgg ttgaaagagt chr9:123883934-123884014 13 3.15e-05 AAGTTTGGGC GTGATTGG CCCCTGGGAG chr2:231263561-231263641 15 3.15e-05 gagggagagt gtgattgg cttgtttgaa chr1:207865343-207865423 15 4.68e-05 cagaaacagc ccgattgg ttatagctca chr20:54967272-54967352 46 4.68e-05 AGCTAGAAAG CCGATTGG CCTGCGCTCG chr2:201390849-201390929 13 4.68e-05 TTCGCAGGAC CCGATTGG CTGATGGGGC chr1:207693119-207693199 45 4.68e-05 acagaaacag ccgattgg ttatagctca chr12:104324060-10432414 19 6.22e-05 CTCACGAATC CTCATTGG GTGCCGTGGG chr1:205719387-205719467 6 6.22e-05 GCCTG CTCATTGG AGACTTCTGC chr2:113522200-113522280 49 6.22e-05 TCCACGCGTC CTCATTGG CTCCTGCGGG chr1:211848976-211849056 46 6.22e-05 CTTCGCCTCT CTCATTGG CTAAGAAGAA chr14:55658328-55658408 55 7.78e-05 AACGAGGCTT GCGATTGG TTTGCTCCGT chr13:73301900-73301980 62 7.78e-05 CGGCCTCCGT GCGATTGG CTGGTTCGCG chr5:89826104-89826184 48 9.34e-05 AATTAACTGA GTCATTGG TAGTCACCAT chr4:3939615-3939695 28 9.34e-05 gtctggccAT GTCATTGG TGCCTTAACC chr1:214776616-214776696 58 1.09e-04 GGTGAGCGTC CTGACTGG GTCCGGATCC chr8:102210813-102210893 21 1.09e-04 CAGGGTACAC CTGACTGG CAGTTAGAGC chr4:129733169-129733249 65 1.39e-04 TGGGGCCGAG CGGATTGG TGCAGCTG chr20:3776834-3776914 47 1.39e-04 AACCCGCTAC CCCATTGG TGGCGTCCGG chr1:1446435-1446515 51 1.39e-04 taaactagtg cccattgg ctattttaaa chr4:144826760-144826840 29 1.55e-04 CCATCATCAG CTGATAGG CAGGGGAGGC chr4:144940538-144940618 31 1.55e-04 CCATCATCAG CTGATAGG CAGGGGAGGC chr4:145061881-145061961 36 1.55e-04 CCATCATCAG CTGATAGG CAGGGGAGGC chr10:106098387-10609846 10 1.70e-04 AACTGGAGA GTGACTGG GAGAGACGGA chr11:9595133-9595213 35 2.02e-04 GAGCTGCACT GGGATTGG TGGACTGGGC chr12:6603165-6603245 30 2.02e-04 CTGCCTGCCG GGGATTGG CCGGATTCTC chr1:109419500-109419580 36 2.02e-04 tgcgccgccc gccATTGG CCGGTCCGAA chr10:94352826-94352906 5 2.02e-04 CGCA GCCATTGG TCCGGCTACT chr9:110036506-110036586 69 2.02e-04 ggaacctgct gggattgg ggtt chr21:38909264-38909344 32 2.17e-04 taaattagac ccgactgg ctaaacgttt chr15:65117828-65117908 66 2.17e-04 CACCCAATCA CCGACTGG ATCTTTA chr9:140135490-140135570 54 2.47e-04 GAGGGGGATT GTGATAGG GAGATAGGAG chr12:98884916-98884996 13 2.47e-04 CCGGTTATAC CTCACTGG GACACCAGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGATTGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:10679842-10679922 1.6e-05 39_[+3]_33 chr20:30327029-30327109 1.6e-05 12_[+3]_60 chr17:43025148-43025228 1.6e-05 40_[+3]_32 chr4:79632879-79632959 1.6e-05 43_[+3]_29 chr9:38170985-38171065 1.6e-05 8_[+3]_64 chr5:137514704-137514784 1.6e-05 26_[+3]_46 chr22:18484506-18484586 1.6e-05 52_[+3]_20 chr4:174255733-174255813 1.6e-05 54_[+3]_18 chr7:67181858-67181938 1.6e-05 31_[+3]_41 chr19:7577293-7577373 1.6e-05 19_[+3]_53 chr5:73687399-73687479 1.6e-05 11_[+3]_61 chr20:35464125-35464205 1.6e-05 39_[+3]_33 chr6:111137194-111137274 3.2e-05 18_[+3]_54 chr17:80712974-80713054 3.2e-05 55_[+3]_17 chr9:123883934-123884014 3.2e-05 12_[+3]_60 chr2:231263561-231263641 3.2e-05 14_[+3]_58 chr1:207865343-207865423 4.7e-05 14_[+3]_58 chr20:54967272-54967352 4.7e-05 45_[+3]_27 chr2:201390849-201390929 4.7e-05 12_[+3]_60 chr1:207693119-207693199 4.7e-05 44_[+3]_28 chr12:104324060-10432414 6.2e-05 18_[+3]_54 chr1:205719387-205719467 6.2e-05 5_[+3]_67 chr2:113522200-113522280 6.2e-05 48_[+3]_24 chr1:211848976-211849056 6.2e-05 45_[+3]_27 chr14:55658328-55658408 7.8e-05 54_[+3]_18 chr13:73301900-73301980 7.8e-05 61_[+3]_11 chr5:89826104-89826184 9.3e-05 47_[+3]_25 chr4:3939615-3939695 9.3e-05 27_[+3]_45 chr1:214776616-214776696 0.00011 57_[+3]_15 chr8:102210813-102210893 0.00011 20_[+3]_52 chr4:129733169-129733249 0.00014 64_[+3]_8 chr20:3776834-3776914 0.00014 46_[+3]_26 chr1:1446435-1446515 0.00014 50_[+3]_22 chr4:144826760-144826840 0.00015 28_[+3]_44 chr4:144940538-144940618 0.00015 30_[+3]_42 chr4:145061881-145061961 0.00015 35_[+3]_37 chr10:106098387-10609846 0.00017 9_[+3]_63 chr11:9595133-9595213 0.0002 34_[+3]_38 chr12:6603165-6603245 0.0002 29_[+3]_43 chr1:109419500-109419580 0.0002 35_[+3]_37 chr10:94352826-94352906 0.0002 4_[+3]_68 chr9:110036506-110036586 0.0002 68_[+3]_4 chr21:38909264-38909344 0.00022 31_[+3]_41 chr15:65117828-65117908 0.00022 65_[+3]_7 chr9:140135490-140135570 0.00025 53_[+3]_19 chr12:98884916-98884996 0.00025 12_[+3]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGATTGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGATTGG width=8 seqs=46 chr19:10679842-10679922 ( 40) CTGATTGG 1 chr20:30327029-30327109 ( 13) CTGATTGG 1 chr17:43025148-43025228 ( 41) CTGATTGG 1 chr4:79632879-79632959 ( 44) CTGATTGG 1 chr9:38170985-38171065 ( 9) CTGATTGG 1 chr5:137514704-137514784 ( 27) CTGATTGG 1 chr22:18484506-18484586 ( 53) CTGATTGG 1 chr4:174255733-174255813 ( 55) CTGATTGG 1 chr7:67181858-67181938 ( 32) CTGATTGG 1 chr19:7577293-7577373 ( 20) CTGATTGG 1 chr5:73687399-73687479 ( 12) CTGATTGG 1 chr20:35464125-35464205 ( 40) CTGATTGG 1 chr6:111137194-111137274 ( 19) GTGATTGG 1 chr17:80712974-80713054 ( 56) GTGATTGG 1 chr9:123883934-123884014 ( 13) GTGATTGG 1 chr2:231263561-231263641 ( 15) GTGATTGG 1 chr1:207865343-207865423 ( 15) CCGATTGG 1 chr20:54967272-54967352 ( 46) CCGATTGG 1 chr2:201390849-201390929 ( 13) CCGATTGG 1 chr1:207693119-207693199 ( 45) CCGATTGG 1 chr12:104324060-10432414 ( 19) CTCATTGG 1 chr1:205719387-205719467 ( 6) CTCATTGG 1 chr2:113522200-113522280 ( 49) CTCATTGG 1 chr1:211848976-211849056 ( 46) CTCATTGG 1 chr14:55658328-55658408 ( 55) GCGATTGG 1 chr13:73301900-73301980 ( 62) GCGATTGG 1 chr5:89826104-89826184 ( 48) GTCATTGG 1 chr4:3939615-3939695 ( 28) GTCATTGG 1 chr1:214776616-214776696 ( 58) CTGACTGG 1 chr8:102210813-102210893 ( 21) CTGACTGG 1 chr4:129733169-129733249 ( 65) CGGATTGG 1 chr20:3776834-3776914 ( 47) CCCATTGG 1 chr1:1446435-1446515 ( 51) CCCATTGG 1 chr4:144826760-144826840 ( 29) CTGATAGG 1 chr4:144940538-144940618 ( 31) CTGATAGG 1 chr4:145061881-145061961 ( 36) CTGATAGG 1 chr10:106098387-10609846 ( 10) GTGACTGG 1 chr11:9595133-9595213 ( 35) GGGATTGG 1 chr12:6603165-6603245 ( 30) GGGATTGG 1 chr1:109419500-109419580 ( 36) GCCATTGG 1 chr10:94352826-94352906 ( 5) GCCATTGG 1 chr9:110036506-110036586 ( 69) GGGATTGG 1 chr21:38909264-38909344 ( 32) CCGACTGG 1 chr15:65117828-65117908 ( 66) CCGACTGG 1 chr9:140135490-140135570 ( 54) GTGATAGG 1 chr12:98884916-98884996 ( 13) CTCACTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGATTGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1909 E= 9.4e-013 -1217 145 38 -1217 -1217 8 -153 137 -1217 -5 160 -1217 200 -1217 -1217 -1217 -1217 -92 -1217 179 -152 -1217 -1217 186 -1217 -1217 199 -1217 -1217 -1217 199 -1217 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGATTGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 46 E= 9.4e-013 0.000000 0.673913 0.326087 0.000000 0.000000 0.260870 0.086957 0.652174 0.000000 0.239130 0.760870 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.130435 0.000000 0.869565 0.086957 0.000000 0.000000 0.913043 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGATTGG MEME-3 regular expression -------------------------------------------------------------------------------- [CG][TC][GC]ATTGG -------------------------------------------------------------------------------- Time 12.00 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCRCCYY MEME-4 width = 8 sites = 23 llr = 199 E-value = 2.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCRCCYY MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::4:::: pos.-specific C aaa2aa35 probability G :::4:::: matrix T ::::::75 bits 2.0 *** ** 1.8 *** ** 1.6 *** ** 1.4 *** ** Relative 1.2 *** ** Entropy 1.0 *** **** (12.5 bits) 0.8 *** **** 0.6 *** **** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCCACCTC consensus G CT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCRCCYY MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2:111435722-111435802 26 2.87e-05 GAGGTCAAGT CCCACCTC CCTCCCTTGA chr1:54355503-54355583 17 2.87e-05 CGGGAAGAGC CCCGCCTC CTTAAAGAGA chr12:123868449-12386852 36 2.87e-05 AAACACCCCT CCCACCTC CTCCGCCGGG chr14:54863528-54863608 9 2.87e-05 CCACAGGG CCCGCCTC CCGCGCGTCT chr15:41624936-41625016 57 5.79e-05 GGTTAGAAAC CCCGCCTT TGAGGCATTT chr4:144826760-144826840 4 5.79e-05 AGG CCCACCTT CCTGTGGCCA chr4:144940538-144940618 6 5.79e-05 CCAGG CCCACCTT CCTGCGGCCA chr2:234763288-234763368 16 5.79e-05 AAATTTGCGT CCCACCTT CCGGCCAATC chr4:145061881-145061961 11 5.79e-05 ATCTTCCAGG CCCACCTT CCTGCGGCCA chr12:98885116-98885196 11 5.79e-05 TCACCTCCTC CCCACCTT AAGGAACTAG chr14:55658328-55658408 29 8.60e-05 CGGGGAAGAT CCCACCCC TTCCACTCAA chr18:12991150-12991230 62 8.60e-05 CGGGCTTCTT CCCGCCCC ATGTCTTCCC chr17:74261062-74261142 72 8.60e-05 AGTGCGCGGC CCCGCCCC G chr1:109419500-109419580 11 8.60e-05 CAACCAgcgc cccgcccc gccccgctgc chrX:40028790-40028870 39 8.60e-05 AACACGCCAC CCCACCCC CTCTTCAACC chr1:205719387-205719467 73 1.15e-04 TCTTCCAGGC CCCGCCCT chr4:130014690-130014770 12 1.15e-04 GTCCACTCGG CCCGCCCT GCGACTTTGA chr20:3776834-3776914 24 1.15e-04 CGCCCTCAGT CCCGCCCT CATCTAACCC chr12:104324060-10432414 4 1.29e-04 CGC CCCCCCTC ACGAATCCTC chr19:35739136-35739216 72 1.29e-04 CCCGAAGCGC CCCCCCTC C chr5:176739620-176739700 33 1.29e-04 AATATCTCGG CCCCCCTC CTCTTCTGTG chr1:32566993-32567073 39 1.43e-04 AAATCCCCTC CCCccctt ttttaaaaaa chr11:9595133-9595213 2 2.00e-04 G CCCTCCTT TTTTTTTCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCRCCYY MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:111435722-111435802 2.9e-05 25_[+4]_47 chr1:54355503-54355583 2.9e-05 16_[+4]_56 chr12:123868449-12386852 2.9e-05 35_[+4]_37 chr14:54863528-54863608 2.9e-05 8_[+4]_64 chr15:41624936-41625016 5.8e-05 56_[+4]_16 chr4:144826760-144826840 5.8e-05 3_[+4]_69 chr4:144940538-144940618 5.8e-05 5_[+4]_67 chr2:234763288-234763368 5.8e-05 15_[+4]_57 chr4:145061881-145061961 5.8e-05 10_[+4]_62 chr12:98885116-98885196 5.8e-05 10_[+4]_62 chr14:55658328-55658408 8.6e-05 28_[+4]_44 chr18:12991150-12991230 8.6e-05 61_[+4]_11 chr17:74261062-74261142 8.6e-05 71_[+4]_1 chr1:109419500-109419580 8.6e-05 10_[+4]_62 chrX:40028790-40028870 8.6e-05 38_[+4]_34 chr1:205719387-205719467 0.00011 72_[+4] chr4:130014690-130014770 0.00011 11_[+4]_61 chr20:3776834-3776914 0.00011 23_[+4]_49 chr12:104324060-10432414 0.00013 3_[+4]_69 chr19:35739136-35739216 0.00013 71_[+4]_1 chr5:176739620-176739700 0.00013 32_[+4]_40 chr1:32566993-32567073 0.00014 38_[+4]_34 chr11:9595133-9595213 0.0002 1_[+4]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCRCCYY MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCRCCYY width=8 seqs=23 chr2:111435722-111435802 ( 26) CCCACCTC 1 chr1:54355503-54355583 ( 17) CCCGCCTC 1 chr12:123868449-12386852 ( 36) CCCACCTC 1 chr14:54863528-54863608 ( 9) CCCGCCTC 1 chr15:41624936-41625016 ( 57) CCCGCCTT 1 chr4:144826760-144826840 ( 4) CCCACCTT 1 chr4:144940538-144940618 ( 6) CCCACCTT 1 chr2:234763288-234763368 ( 16) CCCACCTT 1 chr4:145061881-145061961 ( 11) CCCACCTT 1 chr12:98885116-98885196 ( 11) CCCACCTT 1 chr14:55658328-55658408 ( 29) CCCACCCC 1 chr18:12991150-12991230 ( 62) CCCGCCCC 1 chr17:74261062-74261142 ( 72) CCCGCCCC 1 chr1:109419500-109419580 ( 11) CCCGCCCC 1 chrX:40028790-40028870 ( 39) CCCACCCC 1 chr1:205719387-205719467 ( 73) CCCGCCCT 1 chr4:130014690-130014770 ( 12) CCCGCCCT 1 chr20:3776834-3776914 ( 24) CCCGCCCT 1 chr12:104324060-10432414 ( 4) CCCCCCTC 1 chr19:35739136-35739216 ( 72) CCCCCCTC 1 chr5:176739620-176739700 ( 33) CCCCCCTC 1 chr1:32566993-32567073 ( 39) CCCCCCTT 1 chr11:9595133-9595213 ( 2) CCCTCCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCRCCYY MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.5229 E= 2.1e+003 -1117 202 -1117 -1117 -1117 202 -1117 -1117 -1117 202 -1117 -1117 64 -51 64 -253 -1117 202 -1117 -1117 -1117 202 -1117 -1117 -1117 49 -1117 137 -1117 108 -1117 93 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCRCCYY MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 2.1e+003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.391304 0.173913 0.391304 0.043478 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.347826 0.000000 0.652174 0.000000 0.521739 0.000000 0.478261 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCRCCYY MEME-4 regular expression -------------------------------------------------------------------------------- CCC[AG]CC[TC][CT] -------------------------------------------------------------------------------- Time 15.40 secs. ******************************************************************************** ******************************************************************************** MOTIF CSGCCRCC MEME-5 width = 8 sites = 17 llr = 156 E-value = 1.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CSGCCRCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::4:: pos.-specific C a6:aa:7a probability G :4a::63: matrix T :::::::: bits 2.0 * *** * 1.8 * *** * 1.6 * *** * 1.4 * *** * Relative 1.2 * *** ** Entropy 1.0 ******** (13.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCGCCGCC consensus G AG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSGCCRCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr22:46692692-46692772 28 1.43e-05 CGCACCCAGC CCGCCGCC TCTCGGAGCC chr5:172068043-172068123 69 1.43e-05 TGTGCTTCTC CCGCCGCC TGGT chr2:38604408-38604488 36 1.43e-05 ACGTCAAACG CCGCCGCC GCTTTATCAA chr1:21113197-21113277 14 1.43e-05 cAGCCAGTCA CCGCCGCC GGCATCTTTC chr17:8113847-8113927 28 4.31e-05 GCTACTCTCC CGGCCGCC CGCAAACAAC chrX:2382765-2382845 13 4.31e-05 GGCCAAGGGA CCGCCACC TTATACACAC chrX:2382110-2382190 51 4.31e-05 GGCTAAGGGA CGGCCGCC ATGTACGCAC chrX:2375956-2376036 14 4.31e-05 AGCCAAGGGA CCGCCACC AAGTACAAAC chr15:32907548-32907628 54 5.76e-05 AGGCAGCTCT CGGCCACC CTCCGGGGTC chr17:40346511-40346591 29 5.76e-05 CTGGGAAATC CGGCCACC AGGCCTGAGG chr15:30918186-30918266 31 5.76e-05 AGGCAGCTCT CGGCCACC CTCCGGGGTC chr14:54863528-54863608 73 5.76e-05 GCCGAGTCTT CGGCCACC chr19:10679842-10679922 70 7.21e-05 AACCGGTGGA CCGCCGGC AAT chr15:69706624-69706704 53 7.21e-05 CTTAGCGTCG CCGCCGGC TTCGCAGAGC chr16:31084588-31084668 50 7.21e-05 GGGGAGGGGG CCGCCGGC GCCTGGGATC chr17:66031760-66031840 73 1.01e-04 TAAATCGCGC CGGCCGGC chr12:57024171-57024251 20 1.01e-04 GTCCTAAAGC CCGCCAGC CCATCTTTCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSGCCRCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:46692692-46692772 1.4e-05 27_[+5]_45 chr5:172068043-172068123 1.4e-05 68_[+5]_4 chr2:38604408-38604488 1.4e-05 35_[+5]_37 chr1:21113197-21113277 1.4e-05 13_[+5]_59 chr17:8113847-8113927 4.3e-05 27_[+5]_45 chrX:2382765-2382845 4.3e-05 12_[+5]_60 chrX:2382110-2382190 4.3e-05 50_[+5]_22 chrX:2375956-2376036 4.3e-05 13_[+5]_59 chr15:32907548-32907628 5.8e-05 53_[+5]_19 chr17:40346511-40346591 5.8e-05 28_[+5]_44 chr15:30918186-30918266 5.8e-05 30_[+5]_42 chr14:54863528-54863608 5.8e-05 72_[+5] chr19:10679842-10679922 7.2e-05 69_[+5]_3 chr15:69706624-69706704 7.2e-05 52_[+5]_20 chr16:31084588-31084668 7.2e-05 49_[+5]_23 chr17:66031760-66031840 0.0001 72_[+5] chr12:57024171-57024251 0.0001 19_[+5]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSGCCRCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CSGCCRCC width=8 seqs=17 chr22:46692692-46692772 ( 28) CCGCCGCC 1 chr5:172068043-172068123 ( 69) CCGCCGCC 1 chr2:38604408-38604488 ( 36) CCGCCGCC 1 chr1:21113197-21113277 ( 14) CCGCCGCC 1 chr17:8113847-8113927 ( 28) CGGCCGCC 1 chrX:2382765-2382845 ( 13) CCGCCACC 1 chrX:2382110-2382190 ( 51) CGGCCGCC 1 chrX:2375956-2376036 ( 14) CCGCCACC 1 chr15:32907548-32907628 ( 54) CGGCCACC 1 chr17:40346511-40346591 ( 29) CGGCCACC 1 chr15:30918186-30918266 ( 31) CGGCCACC 1 chr14:54863528-54863608 ( 73) CGGCCACC 1 chr19:10679842-10679922 ( 70) CCGCCGGC 1 chr15:69706624-69706704 ( 53) CCGCCGGC 1 chr16:31084588-31084668 ( 50) CCGCCGGC 1 chr17:66031760-66031840 ( 73) CGGCCGGC 1 chr12:57024171-57024251 ( 20) CCGCCAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSGCCRCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.8333 E= 1.0e+004 -1073 202 -1073 -1073 -1073 125 71 -1073 -1073 -1073 199 -1073 -1073 202 -1073 -1073 -1073 202 -1073 -1073 72 -1073 123 -1073 -1073 151 23 -1073 -1073 202 -1073 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSGCCRCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 1.0e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.588235 0.411765 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.411765 0.000000 0.588235 0.000000 0.000000 0.705882 0.294118 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSGCCRCC MEME-5 regular expression -------------------------------------------------------------------------------- C[CG]GCC[GA][CG]C -------------------------------------------------------------------------------- Time 18.77 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:231263561-231263641 2.05e-02 14_[+3(3.15e-05)]_58 chr15:67417928-67418008 5.13e-01 80 chr20:35464125-35464205 2.30e-03 39_[+3(1.56e-05)]_33 chr5:175612234-175612314 9.11e-02 80 chr6:139811770-139811850 3.03e-01 80 chr2:55717829-55717909 1.45e-01 24_[+1(9.45e-05)]_48 chr12:6873558-6873638 1.46e-01 80 chr10:22519487-22519567 1.68e-01 80 chr5:73687399-73687479 4.55e-03 11_[+3(1.56e-05)]_61 chr16:20774983-20775063 1.32e-02 80 chrX:153990610-153990690 3.45e-01 43_[+1(7.86e-05)]_29 chr19:7577293-7577373 1.20e-04 19_[+3(1.56e-05)]_28_[+2(2.97e-05)]_\ 17 chr17:74835896-74835976 6.19e-02 38_[+1(3.16e-05)]_34 chr2:242699945-242700025 1.93e-01 80 chr4:3939615-3939695 7.64e-03 27_[+3(9.34e-05)]_25_[+1(7.86e-05)]_\ 12 chr9:123883934-123884014 2.45e-02 12_[+3(3.15e-05)]_60 chr14:54863528-54863608 9.50e-06 8_[+4(2.87e-05)]_56_[+5(5.76e-05)] chr6:111137394-111137474 5.40e-01 80 chr1:231189493-231189573 6.73e-02 80 chr16:2479141-2479221 6.45e-04 55_[+2(2.97e-05)]_17 chr1:207693119-207693199 2.37e-01 44_[+3(4.68e-05)]_28 chr5:147953945-147954025 1.35e-01 49_[+1(4.74e-05)]_23 chr20:1448522-1448602 2.10e-03 48_[+2(4.47e-05)]_24 chr1:169452934-169453014 2.50e-01 80 chrX:40028790-40028870 9.05e-04 11_[+1(4.74e-05)]_19_[+4(8.60e-05)]_\ 34 chr15:30918186-30918266 5.44e-05 30_[+5(5.76e-05)]_32_[+2(2.97e-05)]_\ 2 chr1:244488472-244488552 3.22e-01 80 chr3:47764538-47764618 5.33e-01 80 chr5:159848823-159848903 9.50e-02 80 chr3:120136302-120136382 5.99e-02 41_[+1(9.45e-05)]_31 chr19:37262537-37262617 2.03e-01 80 chr12:14518584-14518664 1.69e-01 27_[+1(9.45e-05)]_45 chr17:47468068-47468148 1.55e-01 80 chr3:50359018-50359098 4.94e-01 80 chr11:119205078-11920515 1.81e-03 80 chr7:133769706-133769786 5.30e-01 80 chr9:108435409-108435489 3.30e-01 80 chrX:119376842-119376922 1.98e-02 61_[+2(1.49e-05)]_11 chr12:98884916-98884996 1.53e-02 80 chr12:98885116-98885196 1.27e-01 10_[+4(5.79e-05)]_62 chr1:1446435-1446515 5.79e-02 80 chr2:12654974-12655054 1.13e-01 19_[+1(1.59e-05)]_53 chr2:73944205-73944285 9.26e-03 80 chr13:49200294-49200374 8.63e-01 80 chr1:61543115-61543195 4.11e-02 45_[+1(4.74e-05)]_27 chr17:57233025-57233105 1.63e-02 69_[+1(9.45e-05)]_3 chr12:49717020-49717100 6.76e-01 80 chr7:112366220-112366300 3.45e-02 80 chr8:117887038-117887118 9.50e-03 80 chr5:25569250-25569330 9.94e-01 80 chr15:83847772-83847852 1.75e-01 80 chr2:172370384-172370464 4.21e-02 80 chr15:65117828-65117908 3.60e-03 80 chr4:145061881-145061961 2.02e-05 10_[+4(5.79e-05)]_36_[+1(1.59e-05)]_\ 18 chr15:28539777-28539857 7.08e-03 80 chr17:40346511-40346591 3.70e-02 28_[+5(5.76e-05)]_44 chr7:67181858-67181938 1.49e-02 31_[+3(1.56e-05)]_41 chrX:2375956-2376036 5.54e-02 13_[+5(4.31e-05)]_59 chr9:73222974-73223054 6.23e-02 80 chr2:200775796-200775876 7.84e-01 80 chr15:32907548-32907628 9.79e-02 53_[+5(5.76e-05)]_19 chr9:110036506-110036586 3.88e-01 80 chr15:32907749-32907829 6.64e-01 80 chr1:36103114-36103194 1.56e-01 80 chr9:100807720-100807800 1.39e-02 14_[+2(1.49e-05)]_58 chr11:64795138-64795218 3.58e-01 80 chr13:53029446-53029526 1.59e-02 80 chr20:814299-814379 5.75e-02 3_[+2(2.97e-05)]_69 chr10:94352826-94352906 1.99e-02 80 chr4:174255733-174255813 3.80e-02 54_[+3(1.56e-05)]_18 chr12:50678314-50678394 9.93e-01 80 chr1:211848976-211849056 2.01e-01 45_[+3(6.22e-05)]_27 chr1:109419500-109419580 4.90e-05 10_[+4(8.60e-05)]_62 chr21:46300854-46300934 2.19e-01 59_[+1(7.86e-05)]_13 chr22:21452579-21452659 8.38e-02 80 chr10:106098387-10609846 1.12e-01 80 chr19:2865428-2865508 4.14e-02 8_[+1(4.74e-05)]_64 chr16:23690102-23690182 3.14e-05 18_[+1(1.59e-05)]_7_[+2(1.49e-05)]_\ 39 chr3:183087053-183087133 1.18e-02 80 chr1:88292434-88292514 1.23e-01 80 chr3:6560639-6560719 4.80e-02 80 chr1:167698189-167698269 4.12e-02 11_[+1(4.74e-05)]_61 chr15:40675130-40675210 3.73e-02 66_[+1(7.86e-05)]_6 chr8:125538327-125538407 8.72e-02 17_[+2(1.49e-05)]_55 chr2:196217446-196217526 9.51e-01 80 chr3:172468386-172468466 3.82e-03 31_[+2(2.97e-05)]_31_[+2(2.97e-05)]_\ 2 chr5:162887593-162887673 8.91e-03 80 chr2:234763288-234763368 7.79e-03 15_[+4(5.79e-05)]_57 chr12:120315285-12031536 6.15e-01 80 chr1:32566993-32567073 8.77e-04 11_[+1(1.59e-05)]_27_[+1(4.74e-05)]_\ 26 chr16:31084588-31084668 1.22e-01 49_[+5(7.21e-05)]_23 chr8:144152496-144152576 9.77e-01 80 chr5:176739620-176739700 1.73e-02 80 chr17:80712974-80713054 1.58e-02 55_[+3(3.15e-05)]_17 chr4:144940538-144940618 2.35e-05 5_[+4(5.79e-05)]_36_[+1(1.59e-05)]_\ 23 chr11:125757463-12575754 4.93e-02 80 chr21:38337854-38337934 6.25e-02 24_[+1(7.86e-05)]_48 chr14:102276103-10227618 3.10e-02 25_[+2(1.49e-05)]_47 chr2:201390849-201390929 3.21e-04 12_[+3(4.68e-05)]_60 chrX:124288961-124289041 1.12e-01 80 chr8:3040726-3040806 7.98e-01 80 chr1:205720594-205720674 7.85e-02 80 chr12:6603165-6603245 2.03e-02 80 chr1:21113197-21113277 1.75e-04 13_[+5(1.43e-05)]_59 chr4:110834401-110834481 4.48e-02 80 chr1:197115871-197115951 1.19e-04 12_[+2(5.98e-05)]_31_[+5(4.31e-05)]_\ 21 chr20:54967272-54967352 2.04e-03 11_[+1(1.59e-05)]_26_[+3(4.68e-05)]_\ 27 chr15:59397247-59397327 9.70e-04 9_[+2(5.98e-05)]_63 chr19:3506033-3506113 6.32e-02 80 chr1:43824541-43824621 5.92e-02 80 chr5:156570055-156570135 2.68e-01 17_[+1(9.45e-05)]_55 chrX:119468636-119468716 2.34e-02 80 chr3:127309622-127309702 1.13e-02 65_[+2(2.97e-05)]_7 chrX:2382110-2382190 1.25e-01 50_[+5(4.31e-05)]_22 chr10:91461685-91461765 8.27e-01 80 chr12:10517671-10517751 5.80e-01 80 chr1:51434443-51434523 3.54e-02 80 chr19:7577503-7577583 2.90e-01 80 chr20:3776834-3776914 4.72e-03 80 chr17:38574241-38574321 8.25e-03 61_[+2(2.97e-05)]_11 chr1:150208881-150208961 1.65e-01 6_[+1(4.74e-05)]_66 chr12:98910315-98910395 5.90e-01 80 chrX:124353869-124353949 1.83e-01 80 chr16:18815554-18815634 3.89e-01 80 chr22:18484506-18484586 3.39e-02 52_[+3(1.56e-05)]_20 chrX:2382765-2382845 2.08e-02 12_[+5(4.31e-05)]_60 chr7:134832200-134832280 6.68e-02 30_[+1(7.86e-05)]_42 chr12:27856679-27856759 4.68e-01 80 chr6:111137194-111137274 5.66e-02 18_[+3(3.15e-05)]_54 chr7:97990320-97990400 6.57e-02 80 chr5:137514704-137514784 3.57e-03 26_[+3(1.56e-05)]_20_[+1(7.86e-05)]_\ 18 chr13:73301900-73301980 7.03e-04 61_[+3(7.78e-05)]_11 chr8:102210813-102210893 4.60e-03 53_[+1(1.59e-05)]_19 chr20:2083096-2083176 6.82e-01 80 chr7:28961643-28961723 2.14e-01 37_[+1(4.74e-05)]_11_[+1(4.74e-05)]_\ 16 chr17:80476927-80477007 1.69e-02 31_[+1(7.86e-05)]_41 chr9:140135490-140135570 7.60e-03 80 chr15:69706624-69706704 4.04e-03 52_[+5(7.21e-05)]_20 chr9:38170985-38171065 2.37e-02 8_[+3(1.56e-05)]_64 chrX:89713167-89713247 1.88e-01 80 chrX:2370258-2370338 2.67e-01 80 chr17:74261062-74261142 2.31e-04 52_[+2(1.49e-05)]_11_[+4(8.60e-05)]_\ 1 chr6:27862272-27862352 4.56e-02 80 chr6:27760172-27760252 1.26e-01 57_[+1(7.86e-05)]_15 chr4:79632879-79632959 1.13e-02 43_[+3(1.56e-05)]_29 chr5:176739418-176739498 1.27e-02 80 chr1:207865343-207865423 3.26e-02 14_[+3(4.68e-05)]_58 chr3:151392006-151392086 9.76e-01 80 chr5:134241525-134241605 5.21e-01 80 chrX:2375417-2375497 9.96e-01 80 chr18:12991150-12991230 4.88e-04 42_[+2(2.97e-05)]_11_[+4(8.60e-05)]_\ 11 chr10:91461484-91461564 2.04e-01 80 chr2:113522200-113522280 1.28e-02 48_[+3(6.22e-05)]_24 chr4:130014690-130014770 2.43e-03 80 chr11:269490-269570 6.84e-01 80 chr5:137673643-137673723 1.28e-01 80 chr10:33240203-33240283 3.08e-01 80 chr12:64977575-64977655 2.47e-02 80 chr19:13001810-13001890 3.31e-02 55_[+1(4.74e-05)]_17 chr10:25755086-25755166 1.61e-01 80 chr17:39001017-39001097 2.45e-01 80 chrX:69509927-69510007 5.24e-01 80 chr11:46344416-46344496 5.82e-01 80 chr16:15737461-15737541 1.02e-01 15_[+1(4.74e-05)]_57 chr6:28047880-28047960 7.12e-03 68_[+2(4.47e-05)]_4 chr12:131834925-13183500 8.44e-01 80 chr4:111232124-111232204 3.83e-01 80 chr21:38909264-38909344 8.12e-03 18_[+1(3.16e-05)]_54 chr5:89826104-89826184 3.38e-02 47_[+3(9.34e-05)]_25 chr11:46867831-46867911 4.97e-02 80 chr3:49333082-49333162 4.20e-01 80 chr11:9595133-9595213 3.16e-03 80 chr4:144826760-144826840 1.08e-04 3_[+4(5.79e-05)]_36_[+1(1.59e-05)]_\ 25 chr4:175078549-175078629 5.69e-01 80 chr17:62340795-62340875 7.74e-02 80 chr11:93707066-93707146 3.65e-01 80 chr6:27099772-27099852 1.54e-01 80 chrX:2382964-2383044 2.53e-02 80 chr11:28129648-28129728 4.64e-03 80 chr6:43597727-43597807 1.71e-03 38_[+2(7.47e-05)]_17_[+1(7.86e-05)]_\ 9 chr6:27775818-27775898 2.36e-02 63_[+2(4.47e-05)]_9 chr7:75164486-75164566 2.50e-01 32_[+1(7.86e-05)]_40 chr1:35658931-35659011 3.78e-02 80 chr9:37465699-37465779 8.05e-02 71_[+2(2.97e-05)]_1 chr2:144910619-144910699 1.64e-01 80 chr16:15743906-15743986 2.85e-02 80 chr11:113535994-11353607 1.93e-01 80 chr15:75445666-75445746 5.90e-02 80 chr17:43025148-43025228 1.23e-01 40_[+3(1.56e-05)]_32 chr17:28019409-28019489 3.11e-01 80 chr1:168317695-168317775 9.88e-01 80 chr15:41624936-41625016 2.48e-02 56_[+4(5.79e-05)]_16 chr6:80714356-80714436 1.10e-01 80 chr5:126112380-126112460 1.77e-01 80 chr19:21795059-21795139 3.98e-01 80 chr15:40615638-40615718 6.79e-02 80 chr17:2304981-2305061 3.40e-02 80 chr6:3160566-3160646 3.11e-02 24_[+1(1.59e-05)]_48 chr12:57024171-57024251 3.18e-03 80 chr15:90118462-90118542 1.66e-04 12_[+1(7.86e-05)]_11_[+2(5.98e-05)]_\ 41 chr19:35739136-35739216 7.49e-02 80 chr20:30327029-30327109 5.01e-03 12_[+3(1.56e-05)]_60 chr19:45909696-45909776 7.19e-01 80 chr3:160117376-160117456 7.31e-01 80 chr12:49658615-49658695 2.44e-01 80 chr10:21816924-21817004 3.47e-02 64_[+1(1.59e-05)]_8 chr12:110856256-11085633 9.04e-01 80 chr6:168256626-168256706 4.31e-01 80 chr2:54787646-54787726 1.97e-01 46_[+1(7.86e-05)]_26 chr1:205719387-205719467 6.77e-04 5_[+3(6.22e-05)]_67 chr17:66031760-66031840 6.69e-05 31_[+2(4.47e-05)]_20_[+1(3.16e-05)]_\ 13 chr12:123868449-12386852 7.42e-04 35_[+4(2.87e-05)]_37 chr20:23400683-23400763 4.20e-01 80 chr1:214776616-214776696 5.97e-02 80 chr2:38604408-38604488 9.17e-04 3_[+1(7.86e-05)]_24_[+5(1.43e-05)]_\ 37 chr1:224544436-224544516 1.46e-01 43_[+1(4.74e-05)]_29 chr8:38068330-38068410 2.02e-01 58_[+1(7.86e-05)]_14 chr5:172068043-172068123 6.59e-03 68_[+5(1.43e-05)]_4 chr11:61891403-61891483 3.02e-02 80 chr6:31707525-31707605 4.90e-03 2_[+2(1.49e-05)]_70 chr3:45133652-45133732 3.26e-01 80 chr17:57906807-57906887 8.83e-01 80 chr11:118966347-11896642 1.22e-01 80 chr19:39616178-39616258 1.17e-02 80 chr14:55658328-55658408 4.82e-03 28_[+4(8.60e-05)]_18_[+3(7.78e-05)]_\ 18 chr4:129733169-129733249 7.30e-02 80 chr10:63512397-63512477 1.79e-01 8_[+1(1.59e-05)]_64 chr7:30066410-30066490 7.77e-02 1_[+2(5.98e-05)]_71 chr15:82386177-82386257 1.59e-01 39_[+1(9.45e-05)]_33 chr22:46692692-46692772 1.79e-05 27_[+5(1.43e-05)]_22_[+2(7.47e-05)]_\ 15 chr12:30916053-30916133 2.13e-01 80 chr4:174139888-174139968 2.02e-02 28_[+1(1.59e-05)]_44 chr3:156837357-156837437 5.54e-02 72_[+2(2.97e-05)] chr8:25316519-25316599 7.76e-01 80 chr19:1507845-1507925 5.10e-02 19_[+2(1.49e-05)]_34_[+2(1.49e-05)]_\ 11 chr15:91498524-91498604 7.66e-02 80 chr19:10679842-10679922 3.16e-03 39_[+3(1.56e-05)]_22_[+5(7.21e-05)]_\ 3 chr17:8113847-8113927 2.03e-02 27_[+5(4.31e-05)]_45 chr1:54355503-54355583 1.17e-02 16_[+4(2.87e-05)]_56 chr9:15293810-15293890 1.50e-02 [+2(1.49e-05)]_72 chr3:32726379-32726459 9.96e-01 80 chr6:14975784-14975864 1.11e-02 4_[+2(1.49e-05)]_68 chr12:104324060-10432414 3.75e-03 18_[+3(6.22e-05)]_23_[+3(7.78e-05)]_\ 23 chr19:597679-597759 8.77e-01 80 chr14:100070924-10007100 1.28e-01 15_[+1(4.74e-05)]_57 chr2:111435722-111435802 5.86e-02 25_[+4(2.87e-05)]_47 chr16:29874658-29874738 9.70e-01 80 chr8:66546565-66546645 8.13e-02 80 chr12:77171800-77171880 3.50e-01 80 chr5:68462882-68462962 9.54e-04 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n08.farnam.hpc.yale.internal ********************************************************************************