******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/K562/fasta/RankLinear0.6_40/FOXJ2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr6:3371258-3371338 1.0000 80 chr6:79979812-79979892 1.0000 80 chr5:56333349-56333429 1.0000 80 chr5:759281-759361 1.0000 80 chr4:186157182-186157262 1.0000 80 chr1:197362357-197362437 1.0000 80 chr1:59523054-59523134 1.0000 80 chr4:106102598-106102678 1.0000 80 chr10:21190166-21190246 1.0000 80 chr4:154457018-154457098 1.0000 80 chr1:197288905-197288985 1.0000 80 chr2:146535141-146535221 1.0000 80 chr15:73886196-73886276 1.0000 80 chr2:69536937-69537017 1.0000 80 chrX:123328239-123328319 1.0000 80 chr19:38694940-38695020 1.0000 80 chr1:10313978-10314058 1.0000 80 chr4:184942682-184942762 1.0000 80 chr2:48643149-48643229 1.0000 80 chr1:57287220-57287300 1.0000 80 chr6:109218664-109218744 1.0000 80 chr6:14721740-14721820 1.0000 80 chr2:217852083-217852163 1.0000 80 chr5:148865403-148865483 1.0000 80 chr16:68180670-68180750 1.0000 80 chrX:10165761-10165841 1.0000 80 chr16:57307536-57307616 1.0000 80 chr5:126297647-126297727 1.0000 80 chr3:3152027-3152107 1.0000 80 chr19:16435327-16435407 1.0000 80 chr3:37186471-37186551 1.0000 80 chr1:117657620-117657700 1.0000 80 chr14:90379077-90379157 1.0000 80 chr10:52081975-52082055 1.0000 80 chr1:185536268-185536348 1.0000 80 chr6:159463452-159463532 1.0000 80 chr3:193693199-193693279 1.0000 80 chr3:45068602-45068682 1.0000 80 chr8:56886733-56886813 1.0000 80 chr12:52549433-52549513 1.0000 80 chr7:139521330-139521410 1.0000 80 chr21:33629325-33629405 1.0000 80 chr16:67891914-67891994 1.0000 80 chr2:188374878-188374958 1.0000 80 chr1:173992850-173992930 1.0000 80 chr6:32081889-32081969 1.0000 80 chrX:106954398-106954478 1.0000 80 chr2:64429772-64429852 1.0000 80 chr1:117414612-117414692 1.0000 80 chr6:90237477-90237557 1.0000 80 chr3:132506583-132506663 1.0000 80 chr2:191334725-191334805 1.0000 80 chr12:27390910-27390990 1.0000 80 chr6:138145565-138145645 1.0000 80 chr1:161337646-161337726 1.0000 80 chr7:115995324-115995404 1.0000 80 chr1:169056424-169056504 1.0000 80 chrX:117405945-117406025 1.0000 80 chr7:150063264-150063344 1.0000 80 chr5:95214331-95214411 1.0000 80 chr5:96159662-96159742 1.0000 80 chr1:246760765-246760845 1.0000 80 chr1:196040223-196040303 1.0000 80 chr5:121465157-121465237 1.0000 80 chr8:28233196-28233276 1.0000 80 chr3:171919131-171919211 1.0000 80 chr5:148865603-148865683 1.0000 80 chr7:23570109-23570189 1.0000 80 chr11:62319360-62319440 1.0000 80 chr18:43192007-43192087 1.0000 80 chr18:77153907-77153987 1.0000 80 chr2:169570019-169570099 1.0000 80 chr10:75478075-75478155 1.0000 80 chr7:130406802-130406882 1.0000 80 chr6:158168642-158168722 1.0000 80 chr6:44893341-44893421 1.0000 80 chr4:120221462-120221542 1.0000 80 chr3:196895649-196895729 1.0000 80 chr2:217556338-217556418 1.0000 80 chr11:68714089-68714169 1.0000 80 chr4:187754289-187754369 1.0000 80 chr5:673013-673093 1.0000 80 chr2:69081225-69081305 1.0000 80 chr12:49595822-49595902 1.0000 80 chr11:86203874-86203954 1.0000 80 chr9:4663486-4663566 1.0000 80 chr5:134495484-134495564 1.0000 80 chr11:63334623-63334703 1.0000 80 chr3:156398876-156398956 1.0000 80 chr22:22171064-22171144 1.0000 80 chr11:9590522-9590602 1.0000 80 chr7:27803877-27803957 1.0000 80 chr6:53544281-53544361 1.0000 80 chr18:54802253-54802333 1.0000 80 chr1:185483539-185483619 1.0000 80 chr12:6404454-6404534 1.0000 80 chr1:40480074-40480154 1.0000 80 chr10:7311519-7311599 1.0000 80 chr2:169276801-169276881 1.0000 80 chr19:1860194-1860274 1.0000 80 chr3:171522492-171522572 1.0000 80 chrX:102092909-102092989 1.0000 80 chr12:29317853-29317933 1.0000 80 chr7:92190062-92190142 1.0000 80 chr4:80980027-80980107 1.0000 80 chr19:38891997-38892077 1.0000 80 chr5:157502486-157502566 1.0000 80 chr5:114877913-114877993 1.0000 80 chr5:148459616-148459696 1.0000 80 chr2:55183564-55183644 1.0000 80 chr19:45954076-45954156 1.0000 80 chr13:72287194-72287274 1.0000 80 chr11:77780682-77780762 1.0000 80 chr13:37614198-37614278 1.0000 80 chr5:125874939-125875019 1.0000 80 chr1:71330079-71330159 1.0000 80 chr5:176041026-176041106 1.0000 80 chr19:6066048-6066128 1.0000 80 chr17:78010398-78010478 1.0000 80 chr9:110252154-110252234 1.0000 80 chr7:137638462-137638542 1.0000 80 chr10:52294577-52294657 1.0000 80 chr1:20335080-20335160 1.0000 80 chr2:149416789-149416869 1.0000 80 chr5:133615485-133615565 1.0000 80 chr1:60103960-60104040 1.0000 80 chr10:21619040-21619120 1.0000 80 chr10:3916059-3916139 1.0000 80 chr15:57374480-57374560 1.0000 80 chr1:159869941-159870021 1.0000 80 chr7:116772463-116772543 1.0000 80 chr11:15988805-15988885 1.0000 80 chr4:100591710-100591790 1.0000 80 chr14:75743882-75743962 1.0000 80 chr1:236579751-236579831 1.0000 80 chr14:75760837-75760917 1.0000 80 chr19:6066826-6066906 1.0000 80 chr8:116507509-116507589 1.0000 80 chr16:85589186-85589266 1.0000 80 chr8:141801033-141801113 1.0000 80 chr1:111889181-111889261 1.0000 80 chr5:135469807-135469887 1.0000 80 chr7:20346881-20346961 1.0000 80 chr16:67427407-67427487 1.0000 80 chr1:22087652-22087732 1.0000 80 chr1:151914036-151914116 1.0000 80 chr1:237176548-237176628 1.0000 80 chr1:219884391-219884471 1.0000 80 chr5:127607865-127607945 1.0000 80 chr15:68318486-68318566 1.0000 80 chr1:147084365-147084445 1.0000 80 chr15:52171611-52171691 1.0000 80 chr3:73010004-73010084 1.0000 80 chr4:26994408-26994488 1.0000 80 chr17:38808352-38808432 1.0000 80 chr1:114473605-114473685 1.0000 80 chr14:105948357-10594843 1.0000 80 chr10:3847451-3847531 1.0000 80 chr5:61871542-61871622 1.0000 80 chr12:71116952-71117032 1.0000 80 chr20:33100967-33101047 1.0000 80 chr2:187784142-187784222 1.0000 80 chr4:85152834-85152914 1.0000 80 chr15:64134321-64134401 1.0000 80 chr10:63539838-63539918 1.0000 80 chr17:27873282-27873362 1.0000 80 chr1:154178819-154178899 1.0000 80 chr10:65190211-65190291 1.0000 80 chr1:161135769-161135849 1.0000 80 chr1:196349620-196349700 1.0000 80 chr7:150574386-150574466 1.0000 80 chr1:14833853-14833933 1.0000 80 chr2:205317339-205317419 1.0000 80 chr2:42949778-42949858 1.0000 80 chr5:148459826-148459906 1.0000 80 chr10:22375775-22375855 1.0000 80 chr18:53655965-53656045 1.0000 80 chr9:3525839-3525919 1.0000 80 chr7:36077070-36077150 1.0000 80 chr19:6217050-6217130 1.0000 80 chr3:45068801-45068881 1.0000 80 chr1:245132880-245132960 1.0000 80 chr15:40373931-40374011 1.0000 80 chr1:6009496-6009576 1.0000 80 chr15:76016260-76016340 1.0000 80 chr8:37739474-37739554 1.0000 80 chr19:58609754-58609834 1.0000 80 chr10:77664379-77664459 1.0000 80 chr6:10431904-10431984 1.0000 80 chr6:134906480-134906560 1.0000 80 chr19:54370822-54370902 1.0000 80 chr11:4205852-4205932 1.0000 80 chr7:158611121-158611201 1.0000 80 chr7:87863306-87863386 1.0000 80 chr22:22161880-22161960 1.0000 80 chr2:145418640-145418720 1.0000 80 chr22:29707089-29707169 1.0000 80 chr15:88021181-88021261 1.0000 80 chr4:38162744-38162824 1.0000 80 chr6:126375737-126375817 1.0000 80 chr16:2415022-2415102 1.0000 80 chr1:211551193-211551273 1.0000 80 chr1:159893583-159893663 1.0000 80 chrX:49605528-49605608 1.0000 80 chr4:56178098-56178178 1.0000 80 chr12:5377644-5377724 1.0000 80 chr1:84284747-84284827 1.0000 80 chr6:158168841-158168921 1.0000 80 chr13:23002382-23002462 1.0000 80 chr1:84284948-84285028 1.0000 80 chr2:178754927-178755007 1.0000 80 chr8:130426927-130427007 1.0000 80 chr5:96050716-96050796 1.0000 80 chr10:97026600-97026680 1.0000 80 chr1:205599477-205599557 1.0000 80 chr8:146145512-146145592 1.0000 80 chr11:33912933-33913013 1.0000 80 chr12:95344985-95345065 1.0000 80 chr3:128771664-128771744 1.0000 80 chr2:234766610-234766690 1.0000 80 chr14:75229735-75229815 1.0000 80 chr21:39083055-39083135 1.0000 80 chrX:123994735-123994815 1.0000 80 chr19:14492953-14493033 1.0000 80 chr2:171852959-171853039 1.0000 80 chr10:21386897-21386977 1.0000 80 chr11:122954523-12295460 1.0000 80 chr17:55559304-55559384 1.0000 80 chr12:106697130-10669721 1.0000 80 chr5:77823035-77823115 1.0000 80 chr6:57121555-57121635 1.0000 80 chr9:129350086-129350166 1.0000 80 chr10:21386601-21386681 1.0000 80 chr5:60600996-60601076 1.0000 80 chr15:64540269-64540349 1.0000 80 chr6:4321280-4321360 1.0000 80 chr1:211517693-211517773 1.0000 80 chrX:152647476-152647556 1.0000 80 chr1:20301515-20301595 1.0000 80 chr3:14186149-14186229 1.0000 80 chr20:43223499-43223579 1.0000 80 chrX:102637980-102638060 1.0000 80 chr7:32945065-32945145 1.0000 80 chr12:31889630-31889710 1.0000 80 chr20:36339624-36339704 1.0000 80 chr1:145030136-145030216 1.0000 80 chr16:57314459-57314539 1.0000 80 chr7:98399791-98399871 1.0000 80 chr4:26727769-26727849 1.0000 80 chr4:84278484-84278564 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/K562/inference_raw/MEME/RankLinear0.6_40_FOXJ2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/K562/fasta/RankLinear0.6_40/FOXJ2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.29 C 0.224 G 0.214 T 0.272 Background letter frequencies (from file dataset with add-one prior applied): A 0.29 C 0.224 G 0.214 T 0.272 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CATRGCAA MEME-1 width = 8 sites = 167 llr = 1084 E-value = 1.4e-067 ******************************************************************************** -------------------------------------------------------------------------------- Motif CATRGCAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A :72412aa pos.-specific C a1:::6:: probability G ::169::: matrix T :26::2:: bits 2.2 2.0 1.8 * 1.6 * * ** Relative 1.3 * * ** Entropy 1.1 * ** ** (9.4 bits) 0.9 * ** ** 0.7 ** ***** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CATGGCAA consensus TAA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATRGCAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:32945065-32945145 67 1.52e-05 tgggtgttgc catggcaa tggtaa chr4:38162744-38162824 12 1.52e-05 cctgtgctcc catggcaa cttgtaaaca chr22:29707089-29707169 46 1.52e-05 TTCCCATCTC CATGGCAA CCCAACCAAA chr19:58609754-58609834 31 1.52e-05 TTTTGGGCAC CATGGCAA CGAAGTAAAC chr15:76016260-76016340 19 1.52e-05 GTTCAGGCGC CATGGCAA CCAGGGGAAA chr1:60103960-60104040 43 1.52e-05 GCCAGATTTC CATGGCAA CCGGTCTCCC chr1:20335080-20335160 50 1.52e-05 caggtgttgc catggcaa tggtaaactg chr1:185483539-185483619 15 1.52e-05 tcttgtgatt catggcaa catactgtct chr18:54802253-54802333 49 1.52e-05 TTTACTCTCC CATGGCAA CCTGTGTGAC chr2:69081225-69081305 51 1.52e-05 AAGCAGTTGT CATGGCAA AAAACAACAA chr5:673013-673093 21 1.52e-05 CAAGCGCTGC CATGGCAA CGAGGACTAA chr4:120221462-120221542 29 1.52e-05 AGATACTCAC CATGGCAA AAAATACACA chr7:115995324-115995404 29 1.52e-05 CAACCCCTGC CATGGCAA CACAACTTCA chr3:45068602-45068682 57 1.52e-05 AGTGGAATGT CATGGCAA TGGACGGGGC chr12:31889630-31889710 40 3.59e-05 TCTAAAAAAA CATAGCAA CAAAAAAACC chr20:43223499-43223579 69 3.59e-05 AGGGCCTTGC CATAGCAA CTTT chr3:14186149-14186229 6 3.59e-05 GTTTC CATAGCAA CCCCAGTCTG chr6:4321280-4321360 29 3.59e-05 TTACTGTTTA CATAGCAA TGAAGATTAT chr1:84284747-84284827 63 3.59e-05 cccttgttgc catagcaa aggacttagc chr20:33100967-33101047 27 3.59e-05 TCTTCCATAT CATAGCAA CCAGTACCAC chr10:3916059-3916139 49 3.59e-05 GGTCGGTTTC CATAGCAA CACTCTTGGT chr19:1860194-1860274 34 3.59e-05 TCTCCGTAAC CATAGCAA CGGCGTCAAC chr12:6404454-6404534 16 3.59e-05 TGGTGGGAAC CATAGCAA CCACAGATGA chr11:63334623-63334703 51 3.59e-05 ttcattggga catagcaa ccgcaccaac chr5:134495484-134495564 43 3.59e-05 tggcaacaaa catagcaa cagtaaacat chr11:86203874-86203954 42 3.59e-05 ATTTATCTTG CATAGCAA CAGGCATTCT chr7:139521330-139521410 21 3.59e-05 TCCATATCTC CATAGCAA CCTTGAAGCA chr6:126375737-126375817 39 6.65e-05 TCCTTATCTC CAAGGCAA AATACAAACA chr19:6217050-6217130 24 6.65e-05 TTCCTGTTAC CAAGGCAA CAGAGGGACA chr7:36077070-36077150 47 6.65e-05 GAATGGTTAC CTTGGCAA CAGATGGTTA chr9:3525839-3525919 60 6.65e-05 GCTTGATTCA CAAGGCAA CGGTTGCTAT chr1:111889181-111889261 52 6.65e-05 CCTTCGTTTC CTTGGCAA CGCAGTACAC chr16:85589186-85589266 66 6.65e-05 CCGATTTCTC CTTGGCAA CAAGAGA chr1:159869941-159870021 25 6.65e-05 GACGCGTTAC CTTGGCAA CCACTAGCCC chr1:161337646-161337726 38 6.65e-05 ACACTCGTTG CTTGGCAA CTGCAGAAGG chr3:156398876-156398956 30 9.02e-05 TGTTGTGTTT CCTGGCAA CAAGATGCAG chr6:159463452-159463532 27 9.02e-05 ACACTGTTAC CAGGGCAA CCAGTTCCCT chrX:102637980-102638060 26 1.09e-04 TAGTTATTGC CATGGTAA TGCATTAGTG chr11:33912933-33913013 36 1.09e-04 CTGGGGAGAT CATGGTAA ACACAAGCCT chr15:88021181-88021261 17 1.09e-04 AAGCTGTCTC CATGGTAA CTCACCAACA chr7:20346881-20346961 38 1.09e-04 ACCCAGTTCC CATGGTAA CGTGTTTGTT chr13:37614198-37614278 49 1.09e-04 TATTTGTAAC CATGGTAA AAACAAAACA chr13:72287194-72287274 58 1.09e-04 gttttGTAAC CATGGTAA AACAATAGAA chr5:148459616-148459696 39 1.09e-04 agataagctc catggtaa ccacaaaaca chr6:53544281-53544361 25 1.09e-04 caacattgtc catggtaa caaaacaAAA chrX:117405945-117406025 73 1.09e-04 AGATCGCTGG CATGGTAA chr1:117657620-117657700 36 1.09e-04 TTGTAGAAAC CATGGTAA CGTAACTTGT chr2:69536937-69537017 51 1.09e-04 GAAGCGCCGC CATGGTAA CCCTGCTGGG chr6:3371258-3371338 37 1.09e-04 TATCTGGTGC CATGGTAA CTTTCATGAC chr7:98399791-98399871 54 1.70e-04 GTGCTATTAC CATGGAAA CCCTGAGTCA chr10:21386601-21386681 71 1.70e-04 GCAAGCTACC CAAAGCAA CG chr8:130426927-130427007 43 1.70e-04 AGCCAGCTGC CATGGAAA CGTGAAAGCA chrX:49605528-49605608 18 1.70e-04 ACCACTGTTG CTTAGCAA CAGGGAAGGC chr1:211551193-211551273 44 1.70e-04 CAAAAGCAGC CATGGAAA TAAGAAAAAA chr7:158611121-158611201 17 1.70e-04 TAGATAAATT CTTAGCAA CAGCGTAAAC chr2:205317339-205317419 39 1.70e-04 CATCTGCAGC CATGGAAA CGACAGATGA chr14:105948357-10594843 39 1.70e-04 AAGTCATTGT CATGGAAA CCGGGGCGGT chr1:236579751-236579831 30 1.70e-04 AAGATTGTTG CTTAGCAA CCTGATACTA chr19:38891997-38892077 4 1.70e-04 TTA CTTAGCAA CAGCAAcaaa chr1:169056424-169056504 66 1.70e-04 tcactgttAC CATGGAAA CACACAC chr1:57287220-57287300 59 1.70e-04 GATAGGGTTG CTTAGCAA TGAGTAAACA chr10:21190166-21190246 54 1.70e-04 AATGTATTTC CTTAGCAA CTGTCAGGTG chr1:197362357-197362437 35 1.70e-04 TAGAAGTAGT CATGGAAA CTAATATAAA chr6:79979812-79979892 55 1.70e-04 AAGTTAAAAA CAAAGCAA CACAGTAACC chr5:96050716-96050796 20 1.85e-04 GTCACAGTTG CTAGGCAA CGTTTGTATG chr7:137638462-137638542 36 1.85e-04 ATGATGGTTT CTAGGCAA CCGCTTGATG chr1:173992850-173992930 49 1.85e-04 GCGACTGTTG CTAGGCAA ACATGCCAAC chr11:4205852-4205932 46 2.17e-04 GCTGGGCTGG CCTAGCAA CCACACTGTT chr17:78010398-78010478 50 2.17e-04 GACAGCGTCG CCTAGCAA CGGGAAATGG chr11:9590522-9590602 31 2.17e-04 GCAAAAGTTG CCTAGCAA CATTAGTTAG chr2:217556338-217556418 22 2.17e-04 TCAGCAACAG CCTAGCAA AACACCCTCT chr5:148865403-148865483 48 2.17e-04 TTATGCATTT CCTAGCAA CAGGGGACTG chrX:123328239-123328319 4 2.17e-04 ACT CCTAGCAA CACTGTGTTG chr5:759281-759361 31 2.17e-04 TGGAACCTCC CCTAGCAA CAATCTGTAT chr1:154178819-154178899 43 2.42e-04 TTTCAGTAGT CATAGTAA CATTTACACC chr1:147084365-147084445 31 2.69e-04 TCTCTATGTA CATAGAAA CCGTTGTCCT chr1:71330079-71330159 48 2.69e-04 TGATAGTTAC CATAGAAA AAAATTAAAC chr10:77664379-77664459 26 3.41e-04 TCCCTGTCTC CACGGCAA CGCCACCAGC chr10:63539838-63539918 54 3.41e-04 ACACTGTAGC CCAGGCAA CCAGCCACAC chr5:127607865-127607945 35 3.41e-04 TAACTGTTAT CATGGGAA CAAACAAaca chr1:219884391-219884471 45 3.41e-04 GCTAAGTTGC CCAGGCAA CAGAACTAAT chr8:116507509-116507589 9 3.41e-04 TGTATTAC CATGACAA TCTGACACAA chr19:6066826-6066906 36 3.41e-04 GAGCCTGTTG CTGGGCAA CCGGGAGAAT chr5:133615485-133615565 1 3.41e-04 . ctgggcaa cagagcgTCT chr11:62319360-62319440 50 3.41e-04 TCTTCTGTTG CCAGGCAA CCTGCCTCTA chr5:121465157-121465237 49 3.41e-04 CAGGATACAT CCAGGCAA CAAAGACTGC chr5:96159662-96159742 56 3.41e-04 tggggatatg ctgggcaa cgtgatgatt chr16:67891914-67891994 17 3.41e-04 ggccaggtac catgggaa cagggatgac chr16:57307536-57307616 11 3.41e-04 CCATGGAGAC CTGGGCAA ACAACAGCCA chr4:154457018-154457098 40 3.41e-04 GTTTACTTGT CACGGCAA CGGCAGCACT chr15:64540269-64540349 50 3.78e-04 GCAACATCAC CTTGGTAA TCAAAAGAGT chr19:14492953-14493033 37 4.38e-04 AGCTCGTTGC CTAAGCAA CGGGGCAACA chr10:97026600-97026680 57 4.38e-04 TATCAGTCTC CAAGGAAA CTCAATAATG chr4:26994408-26994488 27 4.38e-04 TAAGTATCAC CAAGGAAA CCACAGCAAA chr8:141801033-141801113 33 4.38e-04 TATGCTGTTG CTAAGCAA CTTTCTCACG chr19:6066048-6066128 28 4.38e-04 TGGTGTTTAC CTAAGCAA CAAACCCTTG chr21:33629325-33629405 34 4.38e-04 CAGTTGTTGC CTTGGAAA CTCTGTCCAG chr1:185536268-185536348 65 4.38e-04 TTATGGTTGT CAAGGAAA CCATTTCC chr1:20301515-20301595 3 4.59e-04 GT CATGGCAG CTATCAGACA chr11:77780682-77780762 13 4.59e-04 gctcttgcag catggcag tcgccataaa chr19:45954076-45954156 24 4.59e-04 GCGCCGGTTG CCGGGCAA CGTCAACAAA chr4:186157182-186157262 41 4.59e-04 aggtcggttt ccgggcaa cataagtaaa chr16:2415022-2415102 52 6.15e-04 caaaaacaga cctggaaa gattccagat chr6:10431904-10431984 45 6.15e-04 AACAACACAG CCTGGAAA CAACAATTCT chr2:42949778-42949858 49 6.15e-04 CTCCAGCCAG CAGGGAAA AAACCAGCTT chr2:187784142-187784222 14 6.15e-04 ttcttgttac cataacaa ctttgtttat chr10:52294577-52294657 46 6.15e-04 GTTTTGTATC CACAGCAA CTCAAACAGT chr10:7311519-7311599 10 6.15e-04 GCAATTTTC CATAACAA CACGCATCTC chr4:187754289-187754369 63 6.15e-04 gttgctgcta cataacaa aggcaggaag chr3:196895649-196895729 43 6.15e-04 TGTTTCTATC CACAGCAA CATCATGGAA chr3:171919131-171919211 20 6.15e-04 TTCTTTCTCC CATAACAA CAAACAAACA chr16:68180670-68180750 29 6.15e-04 GATACAGAAA CATAACAA ACAACTTGGC chr1:10313978-10314058 35 6.15e-04 TATTTGTGTA CTGAGCAA CAGCTGTGCG chr6:57121555-57121635 8 6.95e-04 CTTAGTC CAAAGTAA AAATATCCTG chr18:53655965-53656045 26 6.95e-04 ACACTTCTGC TATGGCAA CAACCCTAAA chr1:114473605-114473685 49 6.95e-04 TATCTTGTTT CTTAGTAA CTGGTGAAAA chr10:21619040-21619120 34 6.95e-04 AAGAAATAAC TATGGCAA CATCTCTCCA chr8:28233196-28233276 56 6.95e-04 GCATGAGTAC CATGGCGA CAGTCACCAT chr6:90237477-90237557 35 6.95e-04 gttgggttgc tatggcaa ttttgttttt chr1:211517693-211517773 42 7.49e-04 TAAGGAAAAG CAAAGAAA ACATACCCTT chrX:123994735-123994815 36 7.49e-04 TAGGCAGCTG CTTAGAAA CGAGAAGTAA chr9:4663486-4663566 44 7.49e-04 AGGACAACTG CAAAGAAA ACAAGCTGAG chr12:5377644-5377724 51 8.31e-04 CTTTTGTAAC CAAGGGAA CTTTGGTTTG chr15:64134321-64134401 3 8.31e-04 GC CTTGGGAA CCAAAAGCTT chr17:38808352-38808432 63 8.31e-04 cttgtggtta caagggaa gggttgtgta chr11:15988805-15988885 42 8.31e-04 AGCACAGTAC CTTGACAA CAGAGTTGCA chr2:169276801-169276881 12 8.31e-04 TCGTAGTCTC CAAGACAA CAGGCCACAT chr6:138145565-138145645 57 8.31e-04 ACAGCAATGC CTCGGCAA CAGCTGTTTG chr1:196349620-196349700 25 8.77e-04 CATGCAGTTG CTAGGTAA CAGCTCTTTG chr1:237176548-237176628 29 9.36e-04 TTGTGGTTGC CAGAGTAA CCATAAAAAT chrX:106954398-106954478 9 9.36e-04 TTATCTAG CCTAGTAA CTGCTGTGGC chr1:40480074-40480154 29 9.78e-04 aatctataat cagagaaa aaatgtttac chrX:10165761-10165841 2 9.78e-04 C CAGAGAAA CACCCGCTGC chr2:171852959-171853039 24 1.11e-03 AGATAAAAAC TATAGCAA CCAGAGGCTG chr3:128771664-128771744 45 1.11e-03 CCATTGGAGC CCTGACAA TAATCACTAG chr18:77153907-77153987 21 1.11e-03 CCACCGTGGT CCCGGCAA CGGCATTAAA chr12:27390910-27390990 16 1.11e-03 atcttgtctc TATAGCAA CAACAACAAC chr1:197288905-197288985 39 1.11e-03 TGGTGGTTAC TATAGCAA TAATCATGAT chr4:106102598-106102678 54 1.11e-03 CCTTTTAACA CAGGACAA TCAACAACAA chr16:57314459-57314539 32 1.36e-03 caaaacaaaa caaaacaa aGACCtgcct chr1:84284948-84285028 11 1.36e-03 tatacagcag caaaggaa tgacctaaag chr1:6009496-6009576 52 1.36e-03 tcattgtaaa caaaacaa agtccctgtc chr7:116772463-116772543 54 1.36e-03 ccaaggaagg ctgggaaa tctcttctgg chr10:75478075-75478155 20 1.36e-03 gatcttatct caaaacaa aacaaaaaaa chr14:90379077-90379157 33 1.36e-03 ACGGGAACAA CAAAGGAA TAAACTACTG chr4:26727769-26727849 43 1.44e-03 tcaggaaaca tttggcaa tgtctgaaga chr2:234766610-234766690 6 1.51e-03 GGCTG CTAAGAAA AGGGTTTGCT chr14:75760837-75760917 14 1.51e-03 CCCTTTGCTC CAGGGCAG GTCGCAGGGC chr3:37186471-37186551 7 1.51e-03 GACACT CATGCCAA AAAAACACTG chr6:14721740-14721820 71 1.51e-03 TGATTGTTGT CATGCCAA TG chr4:80980027-80980107 57 1.71e-03 tataacattt caaagcag aagtttcttt chr1:117414612-117414692 43 1.71e-03 TTGGTGATTT CAAAGCAG GTTTATAAAC chr2:146535141-146535221 64 1.71e-03 AGTAAATATT CAGAGGAA GGCTCTTGT chr6:158168841-158168921 66 1.85e-03 aagcactgtg ctgagtaa ttaatag chr6:32081889-32081969 38 1.85e-03 TCACCCCAAA CACAGTAA TGGGTGAGGG chr15:68318486-68318566 58 1.99e-03 AAAGCCCAGC CATGGTGA TTACACAGTC chr5:125874939-125875019 23 1.99e-03 AAAACTTTTC CATGGTGA CCTCCTGGAT chr2:145418640-145418720 47 2.22e-03 TTACAGTTAC CATGGAGA ATGTCTGTGT chr5:114877913-114877993 26 2.22e-03 AGCCCTTCTT CTGGACAA AGGTGTTTAC chr2:64429772-64429852 39 2.22e-03 GCTATGCTGC TATGGAAA CGGTATCCAC chr12:52549433-52549513 4 2.22e-03 TAG CTAGGCAG CTTTGTAAAC chr10:52081975-52082055 47 2.22e-03 CTAAGGTCAC CATGGAGA CCACAAAACA chr13:23002382-23002462 28 2.33e-03 ATCATCGCCA CAAGATAA TCTCCCAGGC chr3:171522492-171522572 67 2.33e-03 AAGATCCCAT CAAGATAA ACCAAA chr8:56886733-56886813 2 2.33e-03 t caagataa ctgattcttt chr1:59523054-59523134 58 2.33e-03 AGGCCAGTTG CCTAGCAG CACATACAAC chr10:22375775-22375855 54 2.48e-03 CCAGCAAAGC CTAAACAA ACATCTGGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATRGCAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:32945065-32945145 1.5e-05 66_[+1]_6 chr4:38162744-38162824 1.5e-05 11_[+1]_61 chr22:29707089-29707169 1.5e-05 45_[+1]_27 chr19:58609754-58609834 1.5e-05 30_[+1]_42 chr15:76016260-76016340 1.5e-05 18_[+1]_54 chr1:60103960-60104040 1.5e-05 42_[+1]_30 chr1:20335080-20335160 1.5e-05 49_[+1]_23 chr1:185483539-185483619 1.5e-05 14_[+1]_58 chr18:54802253-54802333 1.5e-05 48_[+1]_24 chr2:69081225-69081305 1.5e-05 50_[+1]_22 chr5:673013-673093 1.5e-05 20_[+1]_52 chr4:120221462-120221542 1.5e-05 28_[+1]_44 chr7:115995324-115995404 1.5e-05 28_[+1]_44 chr3:45068602-45068682 1.5e-05 56_[+1]_16 chr12:31889630-31889710 3.6e-05 39_[+1]_33 chr20:43223499-43223579 3.6e-05 68_[+1]_4 chr3:14186149-14186229 3.6e-05 5_[+1]_67 chr6:4321280-4321360 3.6e-05 28_[+1]_44 chr1:84284747-84284827 3.6e-05 62_[+1]_10 chr20:33100967-33101047 3.6e-05 26_[+1]_46 chr10:3916059-3916139 3.6e-05 48_[+1]_24 chr19:1860194-1860274 3.6e-05 33_[+1]_39 chr12:6404454-6404534 3.6e-05 15_[+1]_57 chr11:63334623-63334703 3.6e-05 50_[+1]_22 chr5:134495484-134495564 3.6e-05 42_[+1]_30 chr11:86203874-86203954 3.6e-05 41_[+1]_31 chr7:139521330-139521410 3.6e-05 20_[+1]_52 chr6:126375737-126375817 6.6e-05 38_[+1]_34 chr19:6217050-6217130 6.6e-05 23_[+1]_49 chr7:36077070-36077150 6.6e-05 46_[+1]_26 chr9:3525839-3525919 6.6e-05 59_[+1]_13 chr1:111889181-111889261 6.6e-05 51_[+1]_21 chr16:85589186-85589266 6.6e-05 65_[+1]_7 chr1:159869941-159870021 6.6e-05 24_[+1]_48 chr1:161337646-161337726 6.6e-05 37_[+1]_35 chr3:156398876-156398956 9e-05 29_[+1]_43 chr6:159463452-159463532 9e-05 26_[+1]_46 chrX:102637980-102638060 0.00011 25_[+1]_47 chr11:33912933-33913013 0.00011 35_[+1]_37 chr15:88021181-88021261 0.00011 16_[+1]_56 chr7:20346881-20346961 0.00011 37_[+1]_35 chr13:37614198-37614278 0.00011 48_[+1]_24 chr13:72287194-72287274 0.00011 57_[+1]_15 chr5:148459616-148459696 0.00011 38_[+1]_34 chr6:53544281-53544361 0.00011 24_[+1]_48 chrX:117405945-117406025 0.00011 72_[+1] chr1:117657620-117657700 0.00011 35_[+1]_37 chr2:69536937-69537017 0.00011 50_[+1]_22 chr6:3371258-3371338 0.00011 36_[+1]_36 chr7:98399791-98399871 0.00017 53_[+1]_19 chr10:21386601-21386681 0.00017 70_[+1]_2 chr8:130426927-130427007 0.00017 42_[+1]_30 chrX:49605528-49605608 0.00017 17_[+1]_55 chr1:211551193-211551273 0.00017 43_[+1]_29 chr7:158611121-158611201 0.00017 16_[+1]_56 chr2:205317339-205317419 0.00017 38_[+1]_34 chr14:105948357-10594843 0.00017 38_[+1]_34 chr1:236579751-236579831 0.00017 29_[+1]_43 chr19:38891997-38892077 0.00017 3_[+1]_69 chr1:169056424-169056504 0.00017 65_[+1]_7 chr1:57287220-57287300 0.00017 58_[+1]_14 chr10:21190166-21190246 0.00017 53_[+1]_19 chr1:197362357-197362437 0.00017 34_[+1]_38 chr6:79979812-79979892 0.00017 54_[+1]_18 chr5:96050716-96050796 0.00019 19_[+1]_53 chr7:137638462-137638542 0.00019 35_[+1]_37 chr1:173992850-173992930 0.00019 48_[+1]_24 chr11:4205852-4205932 0.00022 45_[+1]_27 chr17:78010398-78010478 0.00022 49_[+1]_23 chr11:9590522-9590602 0.00022 30_[+1]_42 chr2:217556338-217556418 0.00022 21_[+1]_51 chr5:148865403-148865483 0.00022 47_[+1]_25 chrX:123328239-123328319 0.00022 3_[+1]_69 chr5:759281-759361 0.00022 30_[+1]_42 chr1:154178819-154178899 0.00024 42_[+1]_30 chr1:147084365-147084445 0.00027 30_[+1]_42 chr1:71330079-71330159 0.00027 47_[+1]_25 chr10:77664379-77664459 0.00034 25_[+1]_47 chr10:63539838-63539918 0.00034 53_[+1]_19 chr5:127607865-127607945 0.00034 34_[+1]_38 chr1:219884391-219884471 0.00034 44_[+1]_28 chr8:116507509-116507589 0.00034 8_[+1]_64 chr19:6066826-6066906 0.00034 35_[+1]_37 chr5:133615485-133615565 0.00034 [+1]_72 chr11:62319360-62319440 0.00034 49_[+1]_23 chr5:121465157-121465237 0.00034 48_[+1]_24 chr5:96159662-96159742 0.00034 55_[+1]_17 chr16:67891914-67891994 0.00034 16_[+1]_56 chr16:57307536-57307616 0.00034 10_[+1]_62 chr4:154457018-154457098 0.00034 39_[+1]_33 chr15:64540269-64540349 0.00038 49_[+1]_23 chr19:14492953-14493033 0.00044 36_[+1]_36 chr10:97026600-97026680 0.00044 56_[+1]_16 chr4:26994408-26994488 0.00044 26_[+1]_46 chr8:141801033-141801113 0.00044 32_[+1]_40 chr19:6066048-6066128 0.00044 27_[+1]_45 chr21:33629325-33629405 0.00044 33_[+1]_39 chr1:185536268-185536348 0.00044 64_[+1]_8 chr1:20301515-20301595 0.00046 2_[+1]_70 chr11:77780682-77780762 0.00046 12_[+1]_60 chr19:45954076-45954156 0.00046 23_[+1]_49 chr4:186157182-186157262 0.00046 40_[+1]_32 chr16:2415022-2415102 0.00062 51_[+1]_21 chr6:10431904-10431984 0.00062 44_[+1]_28 chr2:42949778-42949858 0.00062 48_[+1]_24 chr2:187784142-187784222 0.00062 13_[+1]_59 chr10:52294577-52294657 0.00062 45_[+1]_27 chr10:7311519-7311599 0.00062 9_[+1]_63 chr4:187754289-187754369 0.00062 62_[+1]_10 chr3:196895649-196895729 0.00062 42_[+1]_30 chr3:171919131-171919211 0.00062 19_[+1]_53 chr16:68180670-68180750 0.00062 28_[+1]_44 chr1:10313978-10314058 0.00062 34_[+1]_38 chr6:57121555-57121635 0.0007 7_[+1]_65 chr18:53655965-53656045 0.0007 25_[+1]_47 chr1:114473605-114473685 0.0007 48_[+1]_24 chr10:21619040-21619120 0.0007 33_[+1]_39 chr8:28233196-28233276 0.0007 55_[+1]_17 chr6:90237477-90237557 0.0007 34_[+1]_38 chr1:211517693-211517773 0.00075 41_[+1]_31 chrX:123994735-123994815 0.00075 35_[+1]_37 chr9:4663486-4663566 0.00075 43_[+1]_29 chr12:5377644-5377724 0.00083 50_[+1]_22 chr15:64134321-64134401 0.00083 2_[+1]_70 chr17:38808352-38808432 0.00083 62_[+1]_10 chr11:15988805-15988885 0.00083 41_[+1]_31 chr2:169276801-169276881 0.00083 11_[+1]_61 chr6:138145565-138145645 0.00083 56_[+1]_16 chr1:196349620-196349700 0.00088 24_[+1]_48 chr1:237176548-237176628 0.00094 28_[+1]_44 chrX:106954398-106954478 0.00094 8_[+1]_64 chr1:40480074-40480154 0.00098 28_[+1]_44 chrX:10165761-10165841 0.00098 1_[+1]_71 chr2:171852959-171853039 0.0011 23_[+1]_49 chr3:128771664-128771744 0.0011 44_[+1]_28 chr18:77153907-77153987 0.0011 20_[+1]_52 chr12:27390910-27390990 0.0011 15_[+1]_57 chr1:197288905-197288985 0.0011 38_[+1]_34 chr4:106102598-106102678 0.0011 53_[+1]_19 chr16:57314459-57314539 0.0014 31_[+1]_41 chr1:84284948-84285028 0.0014 10_[+1]_62 chr1:6009496-6009576 0.0014 51_[+1]_21 chr7:116772463-116772543 0.0014 53_[+1]_19 chr10:75478075-75478155 0.0014 19_[+1]_53 chr14:90379077-90379157 0.0014 32_[+1]_40 chr4:26727769-26727849 0.0014 42_[+1]_30 chr2:234766610-234766690 0.0015 5_[+1]_67 chr14:75760837-75760917 0.0015 13_[+1]_59 chr3:37186471-37186551 0.0015 6_[+1]_66 chr6:14721740-14721820 0.0015 70_[+1]_2 chr4:80980027-80980107 0.0017 56_[+1]_16 chr1:117414612-117414692 0.0017 42_[+1]_30 chr2:146535141-146535221 0.0017 63_[+1]_9 chr6:158168841-158168921 0.0019 65_[+1]_7 chr6:32081889-32081969 0.0019 37_[+1]_35 chr15:68318486-68318566 0.002 57_[+1]_15 chr5:125874939-125875019 0.002 22_[+1]_50 chr2:145418640-145418720 0.0022 46_[+1]_26 chr5:114877913-114877993 0.0022 25_[+1]_47 chr2:64429772-64429852 0.0022 38_[+1]_34 chr12:52549433-52549513 0.0022 3_[+1]_69 chr10:52081975-52082055 0.0022 46_[+1]_26 chr13:23002382-23002462 0.0023 27_[+1]_45 chr3:171522492-171522572 0.0023 66_[+1]_6 chr8:56886733-56886813 0.0023 1_[+1]_71 chr1:59523054-59523134 0.0023 57_[+1]_15 chr10:22375775-22375855 0.0025 53_[+1]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATRGCAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CATRGCAA width=8 seqs=167 chr7:32945065-32945145 ( 67) CATGGCAA 1 chr4:38162744-38162824 ( 12) CATGGCAA 1 chr22:29707089-29707169 ( 46) CATGGCAA 1 chr19:58609754-58609834 ( 31) CATGGCAA 1 chr15:76016260-76016340 ( 19) CATGGCAA 1 chr1:60103960-60104040 ( 43) CATGGCAA 1 chr1:20335080-20335160 ( 50) CATGGCAA 1 chr1:185483539-185483619 ( 15) CATGGCAA 1 chr18:54802253-54802333 ( 49) CATGGCAA 1 chr2:69081225-69081305 ( 51) CATGGCAA 1 chr5:673013-673093 ( 21) CATGGCAA 1 chr4:120221462-120221542 ( 29) CATGGCAA 1 chr7:115995324-115995404 ( 29) CATGGCAA 1 chr3:45068602-45068682 ( 57) CATGGCAA 1 chr12:31889630-31889710 ( 40) CATAGCAA 1 chr20:43223499-43223579 ( 69) CATAGCAA 1 chr3:14186149-14186229 ( 6) CATAGCAA 1 chr6:4321280-4321360 ( 29) CATAGCAA 1 chr1:84284747-84284827 ( 63) CATAGCAA 1 chr20:33100967-33101047 ( 27) CATAGCAA 1 chr10:3916059-3916139 ( 49) CATAGCAA 1 chr19:1860194-1860274 ( 34) CATAGCAA 1 chr12:6404454-6404534 ( 16) CATAGCAA 1 chr11:63334623-63334703 ( 51) CATAGCAA 1 chr5:134495484-134495564 ( 43) CATAGCAA 1 chr11:86203874-86203954 ( 42) CATAGCAA 1 chr7:139521330-139521410 ( 21) CATAGCAA 1 chr6:126375737-126375817 ( 39) CAAGGCAA 1 chr19:6217050-6217130 ( 24) CAAGGCAA 1 chr7:36077070-36077150 ( 47) CTTGGCAA 1 chr9:3525839-3525919 ( 60) CAAGGCAA 1 chr1:111889181-111889261 ( 52) CTTGGCAA 1 chr16:85589186-85589266 ( 66) CTTGGCAA 1 chr1:159869941-159870021 ( 25) CTTGGCAA 1 chr1:161337646-161337726 ( 38) CTTGGCAA 1 chr3:156398876-156398956 ( 30) CCTGGCAA 1 chr6:159463452-159463532 ( 27) CAGGGCAA 1 chrX:102637980-102638060 ( 26) CATGGTAA 1 chr11:33912933-33913013 ( 36) CATGGTAA 1 chr15:88021181-88021261 ( 17) CATGGTAA 1 chr7:20346881-20346961 ( 38) CATGGTAA 1 chr13:37614198-37614278 ( 49) CATGGTAA 1 chr13:72287194-72287274 ( 58) CATGGTAA 1 chr5:148459616-148459696 ( 39) CATGGTAA 1 chr6:53544281-53544361 ( 25) CATGGTAA 1 chrX:117405945-117406025 ( 73) CATGGTAA 1 chr1:117657620-117657700 ( 36) CATGGTAA 1 chr2:69536937-69537017 ( 51) CATGGTAA 1 chr6:3371258-3371338 ( 37) CATGGTAA 1 chr7:98399791-98399871 ( 54) CATGGAAA 1 chr10:21386601-21386681 ( 71) CAAAGCAA 1 chr8:130426927-130427007 ( 43) CATGGAAA 1 chrX:49605528-49605608 ( 18) CTTAGCAA 1 chr1:211551193-211551273 ( 44) CATGGAAA 1 chr7:158611121-158611201 ( 17) CTTAGCAA 1 chr2:205317339-205317419 ( 39) CATGGAAA 1 chr14:105948357-10594843 ( 39) CATGGAAA 1 chr1:236579751-236579831 ( 30) CTTAGCAA 1 chr19:38891997-38892077 ( 4) CTTAGCAA 1 chr1:169056424-169056504 ( 66) CATGGAAA 1 chr1:57287220-57287300 ( 59) CTTAGCAA 1 chr10:21190166-21190246 ( 54) CTTAGCAA 1 chr1:197362357-197362437 ( 35) CATGGAAA 1 chr6:79979812-79979892 ( 55) CAAAGCAA 1 chr5:96050716-96050796 ( 20) CTAGGCAA 1 chr7:137638462-137638542 ( 36) CTAGGCAA 1 chr1:173992850-173992930 ( 49) CTAGGCAA 1 chr11:4205852-4205932 ( 46) CCTAGCAA 1 chr17:78010398-78010478 ( 50) CCTAGCAA 1 chr11:9590522-9590602 ( 31) CCTAGCAA 1 chr2:217556338-217556418 ( 22) CCTAGCAA 1 chr5:148865403-148865483 ( 48) CCTAGCAA 1 chrX:123328239-123328319 ( 4) CCTAGCAA 1 chr5:759281-759361 ( 31) CCTAGCAA 1 chr1:154178819-154178899 ( 43) CATAGTAA 1 chr1:147084365-147084445 ( 31) CATAGAAA 1 chr1:71330079-71330159 ( 48) CATAGAAA 1 chr10:77664379-77664459 ( 26) CACGGCAA 1 chr10:63539838-63539918 ( 54) CCAGGCAA 1 chr5:127607865-127607945 ( 35) CATGGGAA 1 chr1:219884391-219884471 ( 45) CCAGGCAA 1 chr8:116507509-116507589 ( 9) CATGACAA 1 chr19:6066826-6066906 ( 36) CTGGGCAA 1 chr5:133615485-133615565 ( 1) CTGGGCAA 1 chr11:62319360-62319440 ( 50) CCAGGCAA 1 chr5:121465157-121465237 ( 49) CCAGGCAA 1 chr5:96159662-96159742 ( 56) CTGGGCAA 1 chr16:67891914-67891994 ( 17) CATGGGAA 1 chr16:57307536-57307616 ( 11) CTGGGCAA 1 chr4:154457018-154457098 ( 40) CACGGCAA 1 chr15:64540269-64540349 ( 50) CTTGGTAA 1 chr19:14492953-14493033 ( 37) CTAAGCAA 1 chr10:97026600-97026680 ( 57) CAAGGAAA 1 chr4:26994408-26994488 ( 27) CAAGGAAA 1 chr8:141801033-141801113 ( 33) CTAAGCAA 1 chr19:6066048-6066128 ( 28) CTAAGCAA 1 chr21:33629325-33629405 ( 34) CTTGGAAA 1 chr1:185536268-185536348 ( 65) CAAGGAAA 1 chr1:20301515-20301595 ( 3) CATGGCAG 1 chr11:77780682-77780762 ( 13) CATGGCAG 1 chr19:45954076-45954156 ( 24) CCGGGCAA 1 chr4:186157182-186157262 ( 41) CCGGGCAA 1 chr16:2415022-2415102 ( 52) CCTGGAAA 1 chr6:10431904-10431984 ( 45) CCTGGAAA 1 chr2:42949778-42949858 ( 49) CAGGGAAA 1 chr2:187784142-187784222 ( 14) CATAACAA 1 chr10:52294577-52294657 ( 46) CACAGCAA 1 chr10:7311519-7311599 ( 10) CATAACAA 1 chr4:187754289-187754369 ( 63) CATAACAA 1 chr3:196895649-196895729 ( 43) CACAGCAA 1 chr3:171919131-171919211 ( 20) CATAACAA 1 chr16:68180670-68180750 ( 29) CATAACAA 1 chr1:10313978-10314058 ( 35) CTGAGCAA 1 chr6:57121555-57121635 ( 8) CAAAGTAA 1 chr18:53655965-53656045 ( 26) TATGGCAA 1 chr1:114473605-114473685 ( 49) CTTAGTAA 1 chr10:21619040-21619120 ( 34) TATGGCAA 1 chr8:28233196-28233276 ( 56) CATGGCGA 1 chr6:90237477-90237557 ( 35) TATGGCAA 1 chr1:211517693-211517773 ( 42) CAAAGAAA 1 chrX:123994735-123994815 ( 36) CTTAGAAA 1 chr9:4663486-4663566 ( 44) CAAAGAAA 1 chr12:5377644-5377724 ( 51) CAAGGGAA 1 chr15:64134321-64134401 ( 3) CTTGGGAA 1 chr17:38808352-38808432 ( 63) CAAGGGAA 1 chr11:15988805-15988885 ( 42) CTTGACAA 1 chr2:169276801-169276881 ( 12) CAAGACAA 1 chr6:138145565-138145645 ( 57) CTCGGCAA 1 chr1:196349620-196349700 ( 25) CTAGGTAA 1 chr1:237176548-237176628 ( 29) CAGAGTAA 1 chrX:106954398-106954478 ( 9) CCTAGTAA 1 chr1:40480074-40480154 ( 29) CAGAGAAA 1 chrX:10165761-10165841 ( 2) CAGAGAAA 1 chr2:171852959-171853039 ( 24) TATAGCAA 1 chr3:128771664-128771744 ( 45) CCTGACAA 1 chr18:77153907-77153987 ( 21) CCCGGCAA 1 chr12:27390910-27390990 ( 16) TATAGCAA 1 chr1:197288905-197288985 ( 39) TATAGCAA 1 chr4:106102598-106102678 ( 54) CAGGACAA 1 chr16:57314459-57314539 ( 32) CAAAACAA 1 chr1:84284948-84285028 ( 11) CAAAGGAA 1 chr1:6009496-6009576 ( 52) CAAAACAA 1 chr7:116772463-116772543 ( 54) CTGGGAAA 1 chr10:75478075-75478155 ( 20) CAAAACAA 1 chr14:90379077-90379157 ( 33) CAAAGGAA 1 chr4:26727769-26727849 ( 43) TTTGGCAA 1 chr2:234766610-234766690 ( 6) CTAAGAAA 1 chr14:75760837-75760917 ( 14) CAGGGCAG 1 chr3:37186471-37186551 ( 7) CATGCCAA 1 chr6:14721740-14721820 ( 71) CATGCCAA 1 chr4:80980027-80980107 ( 57) CAAAGCAG 1 chr1:117414612-117414692 ( 43) CAAAGCAG 1 chr2:146535141-146535221 ( 64) CAGAGGAA 1 chr6:158168841-158168921 ( 66) CTGAGTAA 1 chr6:32081889-32081969 ( 38) CACAGTAA 1 chr15:68318486-68318566 ( 58) CATGGTGA 1 chr5:125874939-125875019 ( 23) CATGGTGA 1 chr2:145418640-145418720 ( 47) CATGGAGA 1 chr5:114877913-114877993 ( 26) CTGGACAA 1 chr2:64429772-64429852 ( 39) TATGGAAA 1 chr12:52549433-52549513 ( 4) CTAGGCAG 1 chr10:52081975-52082055 ( 47) CATGGAGA 1 chr13:23002382-23002462 ( 28) CAAGATAA 1 chr3:171522492-171522572 ( 67) CAAGATAA 1 chr8:56886733-56886813 ( 2) CAAGATAA 1 chr1:59523054-59523134 ( 58) CCTAGCAG 1 chr10:22375775-22375855 ( 54) CTAAACAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATRGCAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.74632 E= 1.4e-067 -1403 209 -1403 -251 119 -90 -1403 -30 -35 -242 -99 119 47 -1403 148 -1403 -143 -422 204 -1403 -90 152 -216 -81 174 -1403 -284 -1403 173 -1403 -235 -1403 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATRGCAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 167 E= 1.4e-067 0.000000 0.952096 0.000000 0.047904 0.658683 0.119760 0.000000 0.221557 0.227545 0.041916 0.107784 0.622754 0.401198 0.000000 0.598802 0.000000 0.107784 0.011976 0.880240 0.000000 0.155689 0.640719 0.047904 0.155689 0.970060 0.000000 0.029940 0.000000 0.958084 0.000000 0.041916 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATRGCAA MEME-1 regular expression -------------------------------------------------------------------------------- C[AT][TA][GA]GCAA -------------------------------------------------------------------------------- Time 5.06 secs. ******************************************************************************** ******************************************************************************** MOTIF HTGTTKHY MEME-2 width = 8 sites = 105 llr = 735 E-value = 5.4e-030 ******************************************************************************** -------------------------------------------------------------------------------- Motif HTGTTKHY MEME-2 Description -------------------------------------------------------------------------------- Simplified A 21::::4: pos.-specific C 4:::::44 probability G 1:a::5:: matrix T 39:aa526 bits 2.2 * 2.0 * 1.8 *** 1.6 **** Relative 1.3 **** Entropy 1.1 ***** * (10.1 bits) 0.9 ***** * 0.7 ***** * 0.4 ******* 0.2 ******** 0.0 -------- Multilevel CTGTTTAT consensus T GCC sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HTGTTKHY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr15:40373931-40374011 21 1.26e-05 GTTTTCACTA CTGTTGCT GTTTGGAATT chr1:161135769-161135849 63 1.26e-05 TAGGCCCGGT CTGTTGCT AACATCAAGG chr5:114877913-114877993 45 1.26e-05 GGTGTTTACA CTGTTGCT AGCCAACAAA chr9:4663486-4663566 71 1.26e-05 GGTGGTTATA CTGTTGCT GT chr12:49595822-49595902 28 1.26e-05 ATGGTATTTA CTGTTGCT AGCAACCAGG chr1:196040223-196040303 41 1.26e-05 TTTTTGTTTA CTGTTGCT ATGGTGATCA chr3:132506583-132506663 29 1.26e-05 TGTTGATTCC CTGTtgct atggactgaa chr2:64429772-64429852 24 1.26e-05 AAACTCCTAA CTGTTGCT ATGCTGCTAT chr1:10313978-10314058 18 1.26e-05 ACCGTAGCAA CTGTTGCT ATTTGTGTAC chr3:14186149-14186229 21 3.89e-05 CAACCCCAGT CTGTTTCT CAACAAGAGG chr2:234766610-234766690 29 3.89e-05 TTGCTTTTTT CTGTTGCC CTAGAGCTGA chr5:61871542-61871622 7 3.89e-05 gctcat ctgtttct cactgatgat chr16:67427407-67427487 25 3.89e-05 GTATTATCCC CTGTTTCT CGGTCTCCAT chr5:135469807-135469887 59 3.89e-05 CACATCATGC CTGTTGCC TAGCACTACC chr12:29317853-29317933 21 3.89e-05 TATTTACTTG CTGTTGCC TGGTGTCATA chr10:3916059-3916139 17 6.84e-05 AACACTGTCA CTGTTTCC ATAGATACAC chr1:60103960-60104040 14 6.84e-05 GGTTTCCTTA CTGTTGAT TTACATGTTT chr14:75229735-75229815 24 1.18e-04 gttgttgcga ttgttgct attgtgaatg chr11:4205852-4205932 59 1.18e-04 AGCAACCACA CTGTTTAT AGGTCTCTCT chr1:245132880-245132960 13 1.18e-04 GGGCACGTTT TTGTTGCT ATGAGAACCT chr14:105948357-10594843 56 1.18e-04 ACCGGGGCGG TTGTTGCT ACTGTTTGTC chr7:20346881-20346961 10 1.18e-04 CTTTCAGTA CTGTTTAT AGTTTGTGCT chr5:125874939-125875019 1 1.18e-04 . CTGTTGAC TGCAAAAACT chr12:106697130-10669721 28 1.67e-04 TGTTTGGGAT TTGTTGCC GTGGTTTCCC chr4:56178098-56178178 6 1.67e-04 TGTTT TTGTTTCT TTAtcttgtc chr7:36077070-36077150 10 1.67e-04 CTATCTGAG TTGTTTCT CTGTTTGACC chr14:75760837-75760917 60 1.67e-04 CGCGAGTCCT CTGTTTAC TGTTTGGTTT chr15:57374480-57374560 4 1.67e-04 GTC TTGTTGCC ATGACTCTTA chr3:196895649-196895729 32 1.67e-04 ACGGTCTCAG TTGTTTCT ATCCACAGCA chr1:161337646-161337726 22 1.67e-04 TGATCTTGTG CTGTTTAC ACTCGTTGCT chr2:188374878-188374958 19 1.67e-04 ttcctgttct ttgtttct ccagtttcta chr3:193693199-193693279 26 1.67e-04 ATTACGGCTT CTGTTTAC ATATAAACTT chr2:48643149-48643229 9 1.67e-04 AGAGATAG TTGTTGCC AGGGTGACAG chr5:56333349-56333429 21 1.67e-04 gctcctcccc ctgtttac tggatgttcc chr17:55559304-55559384 20 2.03e-04 AGTTCACTCT TTGTTGAT TTCATGTTGC chr2:178754927-178755007 65 2.03e-04 atcaacagcc ttgtttcc aggatgac chr9:3525839-3525919 8 2.03e-04 gTAGTTG TTGTTGAT GGGTAACAGT chr3:171522492-171522572 30 2.03e-04 TCCACATGCT TTGTTGAT TAGCAACAGT chrX:117405945-117406025 6 2.03e-04 TGGCT TTGTTGAT TTGAAGTAGA chr4:154457018-154457098 18 2.03e-04 CACAGCAGCT TTGTTTCC TTTTGTTTAC chr15:64540269-64540349 22 2.44e-04 GCACAAAAGG TTGTTTAT TTACAATGCT chr2:187784142-187784222 24 2.44e-04 cataacaact ttgtttat aaacctgaag chr5:121465157-121465237 24 2.44e-04 CCCGTCCCTT TTGTTGAC AGGTTGCCAG chr7:150063264-150063344 52 2.44e-04 agttaccttc ttgtttat taggttgcta chr1:117657620-117657700 67 2.44e-04 GTATATTTGT TTGTTTAT AGGAAC chr3:3152027-3152107 26 2.44e-04 CATTTCTGTT TTGTTTAT GTGCCTTGTT chr6:109218664-109218744 32 2.44e-04 AATAATAGCT TTGTTGAC AACCTCTATT chr2:69536937-69537017 23 2.44e-04 AAAAAAACCT TTGTTTAT ATAAACAGTA chr20:36339624-36339704 64 2.65e-04 AAATAGGATG TTGTTTAC CATTGTTTC chr21:39083055-39083135 19 2.65e-04 CTGAGCACGT TTGTTTAC GTAGCTATGA chr4:184942682-184942762 46 2.65e-04 GGACACACCc ttgtttac agtttcatat chr7:98399791-98399871 32 2.96e-04 CAAGCCAAGG CTGTTGTT GCGAGTGCTA chr20:33100967-33101047 2 2.96e-04 C CTGTTGTT CTATTTGTCT chr8:116507509-116507589 57 2.96e-04 CTGTTTCATT CTGTTGTT CAATTGCTCC chr1:117414612-117414692 17 2.96e-04 CTTTATCTTG ATGTTGCT CCTCACCCTT chr6:4321280-4321360 12 3.74e-04 AATCATGATA ATGTTTCT TACTGTTTAC chr12:5377644-5377724 32 3.74e-04 GAAAGGCCCA CTGTTTTT CCTTTTGTAA chrX:49605528-49605608 52 3.74e-04 CCAGGGCCCC ATGTTTCT ATCAGTCACC chr14:75743882-75743962 44 3.74e-04 TGGCGGCGCT GTGTTGCT GTAAACAGCC chr11:15988805-15988885 13 3.74e-04 GCCACACCCA GTGTTGCT ATAGGAACCA chr8:56886733-56886813 33 3.74e-04 ctgcagcctg ctgTTGTC TCATGGTTAC chr10:3847451-3847531 21 4.54e-04 AAAACAAACA GTGTTGCC ATGTGATAGG chr7:137638462-137638542 18 4.54e-04 TTGCCTAATC CTGTTTTC ATGATGGTTT chr6:32081889-32081969 22 4.54e-04 GTTACTTGGT CTGTTTTC ACCCCAAACA chr3:37186471-37186551 55 4.54e-04 AATATTTACT GTGTTGCC ATGGTTTCCA chr1:205599477-205599557 34 5.44e-04 CACCCTAAAC ATGTTTAT AATACACACA chr5:96050716-96050796 35 5.44e-04 CAACGTTTGT ATGTTTAT TTCGAGGCCT chr6:158168841-158168921 29 5.44e-04 ataataccaa atgtttat tgagccccta chr3:73010004-73010084 23 5.44e-04 GCAGATAAAC ATGTTTAT TGTTATGGTT chr17:78010398-78010478 35 5.44e-04 gcccggccgg ATGTTGAC AGCGTCGCCT chr5:157502486-157502566 11 5.44e-04 CGGCAACTTT ATGTTTAT GCAAACAGCC chrX:102092909-102092989 60 5.44e-04 gtagataaat gtgttgat cttgggtgtg chr7:130406802-130406882 13 5.44e-04 CTGGTGCTTT TTGTTGTT TTTGTTTTGT chr6:3371258-3371338 22 5.44e-04 TGTTATTTTG ATGTTTAT CTGGTGCCAT chr3:128771664-128771744 21 6.38e-04 GCAGGCTTGT ATGTTTAC CAGTAACCAT chr12:95344985-95345065 37 6.38e-04 TCATTTCTCC TTGTTTTT GTTGTGTAGT chr2:42949778-42949858 3 6.38e-04 TT TTGTTTTT GCTTGTATTC chr7:150574386-150574466 25 6.38e-04 AACAAGCAAC ATGTTTAC CCCAAGGGTT chr1:159869941-159870021 10 6.38e-04 AAGGCCCTA GTGTTGAC GCGTTACCTT chr2:149416789-149416869 45 6.38e-04 TTTCATATGG ATGTTTAC CACTTCCCTT chr1:40480074-40480154 39 6.38e-04 cagagaaaaa atgtttac agtttcctag chr6:90237477-90237557 63 6.38e-04 ttgttttgtt ttgttttt tgacagagtc chr19:16435327-16435407 35 6.38e-04 TGTGGAGCGC GTGTTGAC AACGTCGCCG chr1:197288905-197288985 22 6.38e-04 AACTGGCTTC TTGTTTTT GGTGGTTACT chr10:21190166-21190246 27 6.38e-04 TGATAGCTTG ATGTTTAC ACGTAAGCAA chrX:102637980-102638060 41 6.74e-04 TAATGCATTA GTGTTTAC CATAcattgg chr4:26994408-26994488 9 6.74e-04 AAGTGAAG GTGTTTAC TAAGTATCAC chr19:6066048-6066128 20 6.74e-04 TTCAGGGGTG GTGTTTAC CTAAGCAACA chr18:54802253-54802333 36 6.74e-04 GTCTAGGGCT GTGTTTAC TCTCCCATGG chr7:23570109-23570189 71 6.74e-04 CATGGGGCTT TTGTTTTC TT chr5:148865403-148865483 72 6.74e-04 ACTGCATGGC TTGTTTTC C chr5:77823035-77823115 66 7.49e-04 CCCAGTTACT ATGTTTTT AACTCAG chr8:146145512-146145592 27 7.49e-04 tgtccaaacc atgttttt cttatcaaac chr7:116772463-116772543 19 7.49e-04 gctgtcttga gtgttgtt aaacattctg chr7:27803877-27803957 9 7.49e-04 taattgtc atgttgtc ttagtctcct chr4:84278484-84278564 35 8.01e-04 ttgtagagct atgttttc atttctcaag chr10:21386897-21386977 37 8.01e-04 TTGAATCTTG ATGTTTTC TGTAACCCTG chr12:27390910-27390990 65 8.01e-04 ACAAGGCCCT GTGTTGTC TAATCAGA chr11:33912933-33913013 20 8.29e-04 cacactcaca caGTTGCT GGGGAGATCA chr1:151914036-151914116 68 8.29e-04 AACTTGGTTA CAGTTGCT TGGTA chr2:217556338-217556418 5 8.29e-04 TCTC CAGTTGCT CAGCAACAGC chr14:90379077-90379157 9 8.29e-04 ATGCTAGG CAGTTGCT TAAGAAACGG chr22:22161880-22161960 53 8.57e-04 TGGAATTGGC CAGTTGCC TAAAAAGGAT chr3:45068801-45068881 34 8.57e-04 CATAAATGGA CAGTTGCC CACTGGCCAG chr10:52294577-52294657 60 8.89e-04 GCAACTCAAA CAGTTTCC AGCTTATGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HTGTTKHY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:40373931-40374011 1.3e-05 20_[+2]_52 chr1:161135769-161135849 1.3e-05 62_[+2]_10 chr5:114877913-114877993 1.3e-05 44_[+2]_28 chr9:4663486-4663566 1.3e-05 70_[+2]_2 chr12:49595822-49595902 1.3e-05 27_[+2]_45 chr1:196040223-196040303 1.3e-05 40_[+2]_32 chr3:132506583-132506663 1.3e-05 28_[+2]_44 chr2:64429772-64429852 1.3e-05 23_[+2]_49 chr1:10313978-10314058 1.3e-05 17_[+2]_55 chr3:14186149-14186229 3.9e-05 20_[+2]_52 chr2:234766610-234766690 3.9e-05 28_[+2]_44 chr5:61871542-61871622 3.9e-05 6_[+2]_66 chr16:67427407-67427487 3.9e-05 24_[+2]_48 chr5:135469807-135469887 3.9e-05 58_[+2]_14 chr12:29317853-29317933 3.9e-05 20_[+2]_52 chr10:3916059-3916139 6.8e-05 16_[+2]_56 chr1:60103960-60104040 6.8e-05 13_[+2]_59 chr14:75229735-75229815 0.00012 23_[+2]_49 chr11:4205852-4205932 0.00012 58_[+2]_14 chr1:245132880-245132960 0.00012 12_[+2]_60 chr14:105948357-10594843 0.00012 55_[+2]_17 chr7:20346881-20346961 0.00012 9_[+2]_63 chr5:125874939-125875019 0.00012 [+2]_72 chr12:106697130-10669721 0.00017 27_[+2]_45 chr4:56178098-56178178 0.00017 5_[+2]_67 chr7:36077070-36077150 0.00017 9_[+2]_63 chr14:75760837-75760917 0.00017 59_[+2]_13 chr15:57374480-57374560 0.00017 3_[+2]_69 chr3:196895649-196895729 0.00017 31_[+2]_41 chr1:161337646-161337726 0.00017 21_[+2]_51 chr2:188374878-188374958 0.00017 18_[+2]_54 chr3:193693199-193693279 0.00017 25_[+2]_47 chr2:48643149-48643229 0.00017 8_[+2]_64 chr5:56333349-56333429 0.00017 20_[+2]_52 chr17:55559304-55559384 0.0002 19_[+2]_53 chr2:178754927-178755007 0.0002 64_[+2]_8 chr9:3525839-3525919 0.0002 7_[+2]_65 chr3:171522492-171522572 0.0002 29_[+2]_43 chrX:117405945-117406025 0.0002 5_[+2]_67 chr4:154457018-154457098 0.0002 17_[+2]_55 chr15:64540269-64540349 0.00024 21_[+2]_51 chr2:187784142-187784222 0.00024 23_[+2]_49 chr5:121465157-121465237 0.00024 23_[+2]_49 chr7:150063264-150063344 0.00024 51_[+2]_21 chr1:117657620-117657700 0.00024 66_[+2]_6 chr3:3152027-3152107 0.00024 25_[+2]_47 chr6:109218664-109218744 0.00024 31_[+2]_41 chr2:69536937-69537017 0.00024 22_[+2]_50 chr20:36339624-36339704 0.00026 63_[+2]_9 chr21:39083055-39083135 0.00026 18_[+2]_54 chr4:184942682-184942762 0.00026 45_[+2]_27 chr7:98399791-98399871 0.0003 31_[+2]_41 chr20:33100967-33101047 0.0003 1_[+2]_71 chr8:116507509-116507589 0.0003 56_[+2]_16 chr1:117414612-117414692 0.0003 16_[+2]_56 chr6:4321280-4321360 0.00037 11_[+2]_61 chr12:5377644-5377724 0.00037 31_[+2]_41 chrX:49605528-49605608 0.00037 51_[+2]_21 chr14:75743882-75743962 0.00037 43_[+2]_29 chr11:15988805-15988885 0.00037 12_[+2]_60 chr8:56886733-56886813 0.00037 32_[+2]_40 chr10:3847451-3847531 0.00045 20_[+2]_52 chr7:137638462-137638542 0.00045 17_[+2]_55 chr6:32081889-32081969 0.00045 21_[+2]_51 chr3:37186471-37186551 0.00045 54_[+2]_18 chr1:205599477-205599557 0.00054 33_[+2]_39 chr5:96050716-96050796 0.00054 34_[+2]_38 chr6:158168841-158168921 0.00054 28_[+2]_44 chr3:73010004-73010084 0.00054 22_[+2]_50 chr17:78010398-78010478 0.00054 34_[+2]_38 chr5:157502486-157502566 0.00054 10_[+2]_62 chrX:102092909-102092989 0.00054 59_[+2]_13 chr7:130406802-130406882 0.00054 12_[+2]_60 chr6:3371258-3371338 0.00054 21_[+2]_51 chr3:128771664-128771744 0.00064 20_[+2]_52 chr12:95344985-95345065 0.00064 36_[+2]_36 chr2:42949778-42949858 0.00064 2_[+2]_70 chr7:150574386-150574466 0.00064 24_[+2]_48 chr1:159869941-159870021 0.00064 9_[+2]_63 chr2:149416789-149416869 0.00064 44_[+2]_28 chr1:40480074-40480154 0.00064 38_[+2]_34 chr6:90237477-90237557 0.00064 62_[+2]_10 chr19:16435327-16435407 0.00064 34_[+2]_38 chr1:197288905-197288985 0.00064 21_[+2]_51 chr10:21190166-21190246 0.00064 26_[+2]_46 chrX:102637980-102638060 0.00067 40_[+2]_32 chr4:26994408-26994488 0.00067 8_[+2]_64 chr19:6066048-6066128 0.00067 19_[+2]_53 chr18:54802253-54802333 0.00067 35_[+2]_37 chr7:23570109-23570189 0.00067 70_[+2]_2 chr5:148865403-148865483 0.00067 71_[+2]_1 chr5:77823035-77823115 0.00075 65_[+2]_7 chr8:146145512-146145592 0.00075 26_[+2]_46 chr7:116772463-116772543 0.00075 18_[+2]_54 chr7:27803877-27803957 0.00075 8_[+2]_64 chr4:84278484-84278564 0.0008 34_[+2]_38 chr10:21386897-21386977 0.0008 36_[+2]_36 chr12:27390910-27390990 0.0008 64_[+2]_8 chr11:33912933-33913013 0.00083 19_[+2]_53 chr1:151914036-151914116 0.00083 67_[+2]_5 chr2:217556338-217556418 0.00083 4_[+2]_68 chr14:90379077-90379157 0.00083 8_[+2]_64 chr22:22161880-22161960 0.00086 52_[+2]_20 chr3:45068801-45068881 0.00086 33_[+2]_39 chr10:52294577-52294657 0.00089 59_[+2]_13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HTGTTKHY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF HTGTTKHY width=8 seqs=105 chr15:40373931-40374011 ( 21) CTGTTGCT 1 chr1:161135769-161135849 ( 63) CTGTTGCT 1 chr5:114877913-114877993 ( 45) CTGTTGCT 1 chr9:4663486-4663566 ( 71) CTGTTGCT 1 chr12:49595822-49595902 ( 28) CTGTTGCT 1 chr1:196040223-196040303 ( 41) CTGTTGCT 1 chr3:132506583-132506663 ( 29) CTGTTGCT 1 chr2:64429772-64429852 ( 24) CTGTTGCT 1 chr1:10313978-10314058 ( 18) CTGTTGCT 1 chr3:14186149-14186229 ( 21) CTGTTTCT 1 chr2:234766610-234766690 ( 29) CTGTTGCC 1 chr5:61871542-61871622 ( 7) CTGTTTCT 1 chr16:67427407-67427487 ( 25) CTGTTTCT 1 chr5:135469807-135469887 ( 59) CTGTTGCC 1 chr12:29317853-29317933 ( 21) CTGTTGCC 1 chr10:3916059-3916139 ( 17) CTGTTTCC 1 chr1:60103960-60104040 ( 14) CTGTTGAT 1 chr14:75229735-75229815 ( 24) TTGTTGCT 1 chr11:4205852-4205932 ( 59) CTGTTTAT 1 chr1:245132880-245132960 ( 13) TTGTTGCT 1 chr14:105948357-10594843 ( 56) TTGTTGCT 1 chr7:20346881-20346961 ( 10) CTGTTTAT 1 chr5:125874939-125875019 ( 1) CTGTTGAC 1 chr12:106697130-10669721 ( 28) TTGTTGCC 1 chr4:56178098-56178178 ( 6) TTGTTTCT 1 chr7:36077070-36077150 ( 10) TTGTTTCT 1 chr14:75760837-75760917 ( 60) CTGTTTAC 1 chr15:57374480-57374560 ( 4) TTGTTGCC 1 chr3:196895649-196895729 ( 32) TTGTTTCT 1 chr1:161337646-161337726 ( 22) CTGTTTAC 1 chr2:188374878-188374958 ( 19) TTGTTTCT 1 chr3:193693199-193693279 ( 26) CTGTTTAC 1 chr2:48643149-48643229 ( 9) TTGTTGCC 1 chr5:56333349-56333429 ( 21) CTGTTTAC 1 chr17:55559304-55559384 ( 20) TTGTTGAT 1 chr2:178754927-178755007 ( 65) TTGTTTCC 1 chr9:3525839-3525919 ( 8) TTGTTGAT 1 chr3:171522492-171522572 ( 30) TTGTTGAT 1 chrX:117405945-117406025 ( 6) TTGTTGAT 1 chr4:154457018-154457098 ( 18) TTGTTTCC 1 chr15:64540269-64540349 ( 22) TTGTTTAT 1 chr2:187784142-187784222 ( 24) TTGTTTAT 1 chr5:121465157-121465237 ( 24) TTGTTGAC 1 chr7:150063264-150063344 ( 52) TTGTTTAT 1 chr1:117657620-117657700 ( 67) TTGTTTAT 1 chr3:3152027-3152107 ( 26) TTGTTTAT 1 chr6:109218664-109218744 ( 32) TTGTTGAC 1 chr2:69536937-69537017 ( 23) TTGTTTAT 1 chr20:36339624-36339704 ( 64) TTGTTTAC 1 chr21:39083055-39083135 ( 19) TTGTTTAC 1 chr4:184942682-184942762 ( 46) TTGTTTAC 1 chr7:98399791-98399871 ( 32) CTGTTGTT 1 chr20:33100967-33101047 ( 2) CTGTTGTT 1 chr8:116507509-116507589 ( 57) CTGTTGTT 1 chr1:117414612-117414692 ( 17) ATGTTGCT 1 chr6:4321280-4321360 ( 12) ATGTTTCT 1 chr12:5377644-5377724 ( 32) CTGTTTTT 1 chrX:49605528-49605608 ( 52) ATGTTTCT 1 chr14:75743882-75743962 ( 44) GTGTTGCT 1 chr11:15988805-15988885 ( 13) GTGTTGCT 1 chr8:56886733-56886813 ( 33) CTGTTGTC 1 chr10:3847451-3847531 ( 21) GTGTTGCC 1 chr7:137638462-137638542 ( 18) CTGTTTTC 1 chr6:32081889-32081969 ( 22) CTGTTTTC 1 chr3:37186471-37186551 ( 55) GTGTTGCC 1 chr1:205599477-205599557 ( 34) ATGTTTAT 1 chr5:96050716-96050796 ( 35) ATGTTTAT 1 chr6:158168841-158168921 ( 29) ATGTTTAT 1 chr3:73010004-73010084 ( 23) ATGTTTAT 1 chr17:78010398-78010478 ( 35) ATGTTGAC 1 chr5:157502486-157502566 ( 11) ATGTTTAT 1 chrX:102092909-102092989 ( 60) GTGTTGAT 1 chr7:130406802-130406882 ( 13) TTGTTGTT 1 chr6:3371258-3371338 ( 22) ATGTTTAT 1 chr3:128771664-128771744 ( 21) ATGTTTAC 1 chr12:95344985-95345065 ( 37) TTGTTTTT 1 chr2:42949778-42949858 ( 3) TTGTTTTT 1 chr7:150574386-150574466 ( 25) ATGTTTAC 1 chr1:159869941-159870021 ( 10) GTGTTGAC 1 chr2:149416789-149416869 ( 45) ATGTTTAC 1 chr1:40480074-40480154 ( 39) ATGTTTAC 1 chr6:90237477-90237557 ( 63) TTGTTTTT 1 chr19:16435327-16435407 ( 35) GTGTTGAC 1 chr1:197288905-197288985 ( 22) TTGTTTTT 1 chr10:21190166-21190246 ( 27) ATGTTTAC 1 chrX:102637980-102638060 ( 41) GTGTTTAC 1 chr4:26994408-26994488 ( 9) GTGTTTAC 1 chr19:6066048-6066128 ( 20) GTGTTTAC 1 chr18:54802253-54802333 ( 36) GTGTTTAC 1 chr7:23570109-23570189 ( 71) TTGTTTTC 1 chr5:148865403-148865483 ( 72) TTGTTTTC 1 chr5:77823035-77823115 ( 66) ATGTTTTT 1 chr8:146145512-146145592 ( 27) ATGTTTTT 1 chr7:116772463-116772543 ( 19) GTGTTGTT 1 chr7:27803877-27803957 ( 9) ATGTTGTC 1 chr4:84278484-84278564 ( 35) ATGTTTTC 1 chr10:21386897-21386977 ( 37) ATGTTTTC 1 chr12:27390910-27390990 ( 65) GTGTTGTC 1 chr11:33912933-33913013 ( 20) CAGTTGCT 1 chr1:151914036-151914116 ( 68) CAGTTGCT 1 chr2:217556338-217556418 ( 5) CAGTTGCT 1 chr14:90379077-90379157 ( 9) CAGTTGCT 1 chr22:22161880-22161960 ( 53) CAGTTGCC 1 chr3:45068801-45068881 ( 34) CAGTTGCC 1 chr10:52294577-52294657 ( 60) CAGTTTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HTGTTKHY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.37734 E= 5.4e-030 -60 69 -79 25 -212 -1336 -1336 178 -1336 -1336 222 -1336 -1336 -1336 -1336 188 -1336 -1336 -1336 188 -1336 -1336 112 97 47 84 -1336 -45 -1336 94 -1336 107 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HTGTTKHY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 105 E= 5.4e-030 0.190476 0.361905 0.123810 0.323810 0.066667 0.000000 0.000000 0.933333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.466667 0.533333 0.400000 0.400000 0.000000 0.200000 0.000000 0.428571 0.000000 0.571429 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HTGTTKHY MEME-2 regular expression -------------------------------------------------------------------------------- [CT]TGTT[TG][ACT][TC] -------------------------------------------------------------------------------- Time 8.59 secs. ******************************************************************************** ******************************************************************************** MOTIF NRTAAACA MEME-3 width = 8 sites = 98 llr = 679 E-value = 7.0e-020 ******************************************************************************** -------------------------------------------------------------------------------- Motif NRTAAACA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 3527aa:a pos.-specific C 3::3::a: probability G 252::::: matrix T 3:5::::: bits 2.2 * 2.0 * 1.8 **** 1.6 **** Relative 1.3 **** Entropy 1.1 ***** (10.0 bits) 0.9 * ***** 0.7 * ***** 0.4 ******* 0.2 ******* 0.0 -------- Multilevel TGTAAACA consensus CAGC sequence A A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NRTAAACA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:158611121-158611201 28 2.07e-05 TTAGCAACAG CGTAAACA AACCACGGTG chr15:40373931-40374011 50 2.07e-05 GCTCAGCAGA CGTAAACA GGGTCATCTG chr16:67891914-67891994 62 2.07e-05 ggagatagac cgtaaaca aataccaaac chr10:21386601-21386681 13 4.57e-05 CCAAGAGAAG TGTAAACA GAAAAGATAA chr21:39083055-39083135 44 4.57e-05 TGAAACCTTC TGTAAACA CCACTATCTC chr4:38162744-38162824 22 4.57e-05 catggcaact tgtaaaca atgctgacat chr4:85152834-85152914 53 4.57e-05 gagatttggg tgtaaaca cagccaaacc chr15:68318486-68318566 41 4.57e-05 AACACTGTTA TGTAAACA AAGCCCAGCC chr7:137638462-137638542 64 4.57e-05 CAAACTAGTT TGTAAACA GCTGGCAGC chr11:77780682-77780762 36 4.57e-05 ataaacaaca tgtaaaca aatgagcatg chr12:52549433-52549513 15 4.57e-05 TAGGCAGCTT TGTAAACA GCAGAAACAC chr5:126297647-126297727 59 4.57e-05 CCATTCACAG TGTAAACA AACAGGCACC chr15:73886196-73886276 20 4.57e-05 AGCAGATGCA TGTAAACA CGTTAGCGCA chr2:146535141-146535221 25 4.57e-05 GATGAGTCAT TGTAAACA GTATTTCCTA chr1:145030136-145030216 38 7.25e-05 TACATGACGC AGTAAACA ACATTCAGAA chr19:58609754-58609834 42 7.25e-05 ATGGCAACGA AGTAAACA AGCGGGTAAA chr2:169276801-169276881 54 7.25e-05 gacaggagac agtaaaca acaggtcaca chr5:134495484-134495564 52 7.25e-05 acatagcaac agtaaaca tggtcataca chr1:57287220-57287300 69 7.25e-05 CTTAGCAATG AGTAAACA CCAG chr19:38694940-38695020 51 7.25e-05 atgggtgaag agtaaaca gtgataacac chr1:84284948-84285028 58 1.00e-04 ggaagcagag cataaaca tttggaaaat chr1:14833853-14833933 69 1.00e-04 TAGATATAAA CATAAACA TTAG chr12:29317853-29317933 35 1.00e-04 TGCCTGGTGT CATAAACA GATTAACGAT chr18:43192007-43192087 52 1.00e-04 gagacatata cataaaca gcaatgacaG chr6:134906480-134906560 1 1.86e-04 . TATAAACA TGAGCTCCCA chr17:27873282-27873362 51 1.86e-04 CTAGACATCA GGTAAACA TTCAGTACAC chr1:22087652-22087732 14 1.86e-04 TTACAAATGG GGTAAACA CACCCGTTTG chr19:45954076-45954156 32 1.86e-04 TGCCGGGCAA CGTCAACA AACGACGCGG chr19:1860194-1860274 45 1.86e-04 ATAGCAACGG CGTCAACA TCACCCACAG chr6:158168642-158168722 52 1.86e-04 AGTGACACCT CGTCAACA CTTGCTATCA chr7:115995324-115995404 13 1.86e-04 GTTCCCCTAT GGTAAACA ACCCCTGCCA chr6:138145565-138145645 42 1.86e-04 AAAGGTAACA CGTCAACA GCAATGCCTC chr1:117414612-117414692 54 1.86e-04 AAAGCAGGTT TATAAACA AGCGCTGTCA chr2:188374878-188374958 50 1.86e-04 ttaactgtgc tataaaca acccttccca chr1:197362357-197362437 47 1.86e-04 TGGAAACTAA TATAAACA ATGACTTCTG chr7:98399791-98399871 16 2.26e-04 TCATCTGCCC TGGAAACA AGCCAAGGCT chr1:211551193-211551273 23 2.26e-04 TTTGAAACTA TGGAAACA CTGCAAAAGC chr10:63539838-63539918 34 2.26e-04 GGACCAGAGC TGTCAACA CAACACTGTA chr20:33100967-33101047 73 2.26e-04 CCAAAACAAC TGTCAACA chr19:6066048-6066128 44 2.26e-04 AACAAACCCT TGTCAACA ATCGCTATCT chr11:63334623-63334703 10 2.26e-04 caaccacac tgtcaaca gcacaatgag chr9:129350086-129350166 30 2.62e-04 ACACTGTGAA AATAAACA TGAACTCAAG chr2:145418640-145418720 22 2.62e-04 GACTTTTCTA AATAAACA AGTAAACTTA chr15:76016260-76016340 35 2.62e-04 AACCAGGGGA AATAAACA CTACGAGTTT chr5:176041026-176041106 35 2.62e-04 CCGGGGGTGG AATAAACA ATCCCAGTGA chr12:6404454-6404534 50 2.62e-04 GTCAGTAGAT AATAAACA GGATTCTTTA chr7:23570109-23570189 27 2.62e-04 TAGTGACTAG AATAAACA TCTACACAAC chr4:26727769-26727849 35 3.25e-04 cacacacatc aggaaaca tttggcaatg chr5:125874939-125875019 45 3.25e-04 CTGGATACAA AGTCAACA CAACTCACTT chrX:106954398-106954478 70 3.25e-04 AGCGTTGCCT AGGAAACA AAG chrX:123328239-123328319 44 3.25e-04 CAACAGCTGA AGGAAACA GTTCCTACGT chrX:123994735-123994815 56 4.23e-04 AGAAGTAAAA CAGAAACA TCTTGATAAA chr2:178754927-178755007 54 4.23e-04 tatcctgata catcaaca gccttgtttc chr1:159893583-159893663 65 4.23e-04 GGGCTCCGGG CAGAAACA CCCTGTCA chr1:114473605-114473685 61 4.23e-04 TAGTAACTGG TGAAAACA GCAGTGTGGC chr6:159463452-159463532 6 4.23e-04 CAACC GATAAACA ACCACACTGT chr2:48643149-48643229 35 4.23e-04 AGAAACCAAA CATCAACA GAAGTGTCAC chr16:85589186-85589266 40 5.19e-04 AGTAGCTAAG GGGAAACA AAACAAAGCC chr11:9590522-9590602 46 5.19e-04 CAACATTAGT TAGAAACA ACATTGGGTG chr18:77153907-77153987 43 5.19e-04 ATTAAACAGA GGGAAACA GACCCGGGAT chr7:139521330-139521410 69 5.19e-04 TCACAGGCAG GGGAAACA CACA chr16:57314459-57314539 16 5.63e-04 CATTGGCAAG AGaaaaca aaacaaaaca chr11:122954523-12295460 34 5.63e-04 ATGGTCTCAC TGGCAACA GCAACAACAA chr10:3847451-3847531 9 5.63e-04 TATTATTT AGAAAACA AACAGTGTTG chr5:56333349-56333429 42 5.63e-04 atgttcctgt tggcaaca gccccacaat chr16:2415022-2415102 42 6.49e-04 caacagacag caaaaaca gacctggaaa chr15:64134321-64134401 29 6.49e-04 TTTGAAAAAA CAAAAACA ACAAACGGAA chr5:133615485-133615565 19 6.49e-04 cagagcgTCT CAaaaaca aaacaaaaca chr9:110252154-110252234 31 6.49e-04 ATGGCAGCTA AATCAACA AACTCGGCGC chr6:53544281-53544361 38 6.49e-04 ggtaacaaaa caAAAACA CAGGTCACAT chr2:69081225-69081305 21 6.49e-04 GCTGTGGATC CAAAAACA TCTACCAAAG chr1:59523054-59523134 41 6.49e-04 GGTAAATAAG CAAAAACA GGCCAGTTGC chr7:32945065-32945145 6 7.40e-04 ttcta ggaaaaca accccggtcg chr5:77823035-77823115 42 7.40e-04 CTTGGAGACA GGAAAACA AACGAACCCA chr2:234766610-234766690 70 7.40e-04 GCTGTGAAAT AGGCAACA AGC chrX:49605528-49605608 1 7.40e-04 . GGAAAACA CCACTGTTGC chr1:196349620-196349700 42 7.40e-04 ACAGCTCTTT GGAAAACA GTAAATAGTG chr7:20346881-20346961 62 8.19e-04 TGTTCCCATG GAGAAACA AAGTGAACAC chr19:38891997-38892077 12 8.19e-04 TACTTAGCAA CAGCAAca aaacaacagc chr2:217556338-217556418 13 8.19e-04 TCCAGTTGCT CAGCAACA GCCTAGCAAA chr4:120221462-120221542 49 8.19e-04 AATACACAAA GAGAAACA CCACCACATC chr21:33629325-33629405 13 8.19e-04 TCAGAGTGGA GAGAAACA CAGCAGTTGT chr6:79979812-79979892 31 8.19e-04 GGAGATTACC CAGCAACA ATCAGAAAGT chr19:14492953-14493033 47 8.90e-04 CTAAGCAACG GGGCAACA AAGAGAGTGA chr8:116507509-116507589 32 8.90e-04 CACAACTTTC AAAAAACA GTAAGCACTG chr3:171522492-171522572 38 8.90e-04 CTTTGTTGAT TAGCAACA GTTTAAACAT chr10:75478075-75478155 51 8.90e-04 cagtaacaaa aaaaaaCA CCAGGAACAA chr2:169570019-169570099 57 8.90e-04 TAATATCAGA AAAAAACA ATCTTCACTG chr5:95214331-95214411 51 8.90e-04 CAGAACTAAT TAGCAACA AGAGACGCTC chrX:10165761-10165841 47 8.90e-04 ACTGTAGCAA TAGCAACA GCTGATAAAC chr3:45068602-45068682 37 9.12e-04 GGCTGTGTTG AGACAACA TCAGTGGAAT chr22:29707089-29707169 65 9.86e-04 CCAACCAAAC CAACAACA CAGCTGGG chr22:22171064-22171144 49 9.86e-04 agggttacca CAACAACA CGAAATGAAG chr4:106102598-106102678 63 9.86e-04 ACAGGACAAT CAACAACA AATTCCTTCT chr10:21386897-21386977 70 1.03e-03 TAAGTGCTGA TAACAACA ATT chr1:246760765-246760845 13 1.03e-03 ATGGTTGTCG TAACAACA CTAGATATTT chr6:10431904-10431984 34 1.08e-03 CTGAGTTTCC AAACAACA CAGCCTGGAA chr10:3916059-3916139 69 1.12e-03 CTCTTGGTCT CCTAAACA AATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NRTAAACA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:158611121-158611201 2.1e-05 27_[+3]_45 chr15:40373931-40374011 2.1e-05 49_[+3]_23 chr16:67891914-67891994 2.1e-05 61_[+3]_11 chr10:21386601-21386681 4.6e-05 12_[+3]_60 chr21:39083055-39083135 4.6e-05 43_[+3]_29 chr4:38162744-38162824 4.6e-05 21_[+3]_51 chr4:85152834-85152914 4.6e-05 52_[+3]_20 chr15:68318486-68318566 4.6e-05 40_[+3]_32 chr7:137638462-137638542 4.6e-05 63_[+3]_9 chr11:77780682-77780762 4.6e-05 35_[+3]_37 chr12:52549433-52549513 4.6e-05 14_[+3]_58 chr5:126297647-126297727 4.6e-05 58_[+3]_14 chr15:73886196-73886276 4.6e-05 19_[+3]_53 chr2:146535141-146535221 4.6e-05 24_[+3]_48 chr1:145030136-145030216 7.2e-05 37_[+3]_35 chr19:58609754-58609834 7.2e-05 41_[+3]_31 chr2:169276801-169276881 7.2e-05 53_[+3]_19 chr5:134495484-134495564 7.2e-05 51_[+3]_21 chr1:57287220-57287300 7.2e-05 68_[+3]_4 chr19:38694940-38695020 7.2e-05 50_[+3]_22 chr1:84284948-84285028 0.0001 57_[+3]_15 chr1:14833853-14833933 0.0001 68_[+3]_4 chr12:29317853-29317933 0.0001 34_[+3]_38 chr18:43192007-43192087 0.0001 51_[+3]_21 chr6:134906480-134906560 0.00019 [+3]_72 chr17:27873282-27873362 0.00019 50_[+3]_22 chr1:22087652-22087732 0.00019 13_[+3]_59 chr19:45954076-45954156 0.00019 31_[+3]_41 chr19:1860194-1860274 0.00019 44_[+3]_28 chr6:158168642-158168722 0.00019 51_[+3]_21 chr7:115995324-115995404 0.00019 12_[+3]_60 chr6:138145565-138145645 0.00019 41_[+3]_31 chr1:117414612-117414692 0.00019 53_[+3]_19 chr2:188374878-188374958 0.00019 49_[+3]_23 chr1:197362357-197362437 0.00019 46_[+3]_26 chr7:98399791-98399871 0.00023 15_[+3]_57 chr1:211551193-211551273 0.00023 22_[+3]_50 chr10:63539838-63539918 0.00023 33_[+3]_39 chr20:33100967-33101047 0.00023 72_[+3] chr19:6066048-6066128 0.00023 43_[+3]_29 chr11:63334623-63334703 0.00023 9_[+3]_63 chr9:129350086-129350166 0.00026 29_[+3]_43 chr2:145418640-145418720 0.00026 21_[+3]_51 chr15:76016260-76016340 0.00026 34_[+3]_38 chr5:176041026-176041106 0.00026 34_[+3]_38 chr12:6404454-6404534 0.00026 49_[+3]_23 chr7:23570109-23570189 0.00026 26_[+3]_46 chr4:26727769-26727849 0.00033 34_[+3]_38 chr5:125874939-125875019 0.00033 44_[+3]_28 chrX:106954398-106954478 0.00033 69_[+3]_3 chrX:123328239-123328319 0.00033 43_[+3]_29 chrX:123994735-123994815 0.00042 55_[+3]_17 chr2:178754927-178755007 0.00042 53_[+3]_19 chr1:159893583-159893663 0.00042 64_[+3]_8 chr1:114473605-114473685 0.00042 60_[+3]_12 chr6:159463452-159463532 0.00042 5_[+3]_67 chr2:48643149-48643229 0.00042 34_[+3]_38 chr16:85589186-85589266 0.00052 39_[+3]_33 chr11:9590522-9590602 0.00052 45_[+3]_27 chr18:77153907-77153987 0.00052 42_[+3]_30 chr7:139521330-139521410 0.00052 68_[+3]_4 chr16:57314459-57314539 0.00056 15_[+3]_57 chr11:122954523-12295460 0.00056 33_[+3]_39 chr10:3847451-3847531 0.00056 8_[+3]_64 chr5:56333349-56333429 0.00056 41_[+3]_31 chr16:2415022-2415102 0.00065 41_[+3]_31 chr15:64134321-64134401 0.00065 28_[+3]_44 chr5:133615485-133615565 0.00065 18_[+3]_54 chr9:110252154-110252234 0.00065 30_[+3]_42 chr6:53544281-53544361 0.00065 37_[+3]_35 chr2:69081225-69081305 0.00065 20_[+3]_52 chr1:59523054-59523134 0.00065 40_[+3]_32 chr7:32945065-32945145 0.00074 5_[+3]_67 chr5:77823035-77823115 0.00074 41_[+3]_31 chr2:234766610-234766690 0.00074 69_[+3]_3 chrX:49605528-49605608 0.00074 [+3]_72 chr1:196349620-196349700 0.00074 41_[+3]_31 chr7:20346881-20346961 0.00082 61_[+3]_11 chr19:38891997-38892077 0.00082 11_[+3]_61 chr2:217556338-217556418 0.00082 12_[+3]_60 chr4:120221462-120221542 0.00082 48_[+3]_24 chr21:33629325-33629405 0.00082 12_[+3]_60 chr6:79979812-79979892 0.00082 30_[+3]_42 chr19:14492953-14493033 0.00089 46_[+3]_26 chr8:116507509-116507589 0.00089 31_[+3]_41 chr3:171522492-171522572 0.00089 37_[+3]_35 chr10:75478075-75478155 0.00089 50_[+3]_22 chr2:169570019-169570099 0.00089 56_[+3]_16 chr5:95214331-95214411 0.00089 50_[+3]_22 chrX:10165761-10165841 0.00089 46_[+3]_26 chr3:45068602-45068682 0.00091 36_[+3]_36 chr22:29707089-29707169 0.00099 64_[+3]_8 chr22:22171064-22171144 0.00099 48_[+3]_24 chr4:106102598-106102678 0.00099 62_[+3]_10 chr10:21386897-21386977 0.001 69_[+3]_3 chr1:246760765-246760845 0.001 12_[+3]_60 chr6:10431904-10431984 0.0011 33_[+3]_39 chr10:3916059-3916139 0.0011 68_[+3]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NRTAAACA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF NRTAAACA width=8 seqs=98 chr7:158611121-158611201 ( 28) CGTAAACA 1 chr15:40373931-40374011 ( 50) CGTAAACA 1 chr16:67891914-67891994 ( 62) CGTAAACA 1 chr10:21386601-21386681 ( 13) TGTAAACA 1 chr21:39083055-39083135 ( 44) TGTAAACA 1 chr4:38162744-38162824 ( 22) TGTAAACA 1 chr4:85152834-85152914 ( 53) TGTAAACA 1 chr15:68318486-68318566 ( 41) TGTAAACA 1 chr7:137638462-137638542 ( 64) TGTAAACA 1 chr11:77780682-77780762 ( 36) TGTAAACA 1 chr12:52549433-52549513 ( 15) TGTAAACA 1 chr5:126297647-126297727 ( 59) TGTAAACA 1 chr15:73886196-73886276 ( 20) TGTAAACA 1 chr2:146535141-146535221 ( 25) TGTAAACA 1 chr1:145030136-145030216 ( 38) AGTAAACA 1 chr19:58609754-58609834 ( 42) AGTAAACA 1 chr2:169276801-169276881 ( 54) AGTAAACA 1 chr5:134495484-134495564 ( 52) AGTAAACA 1 chr1:57287220-57287300 ( 69) AGTAAACA 1 chr19:38694940-38695020 ( 51) AGTAAACA 1 chr1:84284948-84285028 ( 58) CATAAACA 1 chr1:14833853-14833933 ( 69) CATAAACA 1 chr12:29317853-29317933 ( 35) CATAAACA 1 chr18:43192007-43192087 ( 52) CATAAACA 1 chr6:134906480-134906560 ( 1) TATAAACA 1 chr17:27873282-27873362 ( 51) GGTAAACA 1 chr1:22087652-22087732 ( 14) GGTAAACA 1 chr19:45954076-45954156 ( 32) CGTCAACA 1 chr19:1860194-1860274 ( 45) CGTCAACA 1 chr6:158168642-158168722 ( 52) CGTCAACA 1 chr7:115995324-115995404 ( 13) GGTAAACA 1 chr6:138145565-138145645 ( 42) CGTCAACA 1 chr1:117414612-117414692 ( 54) TATAAACA 1 chr2:188374878-188374958 ( 50) TATAAACA 1 chr1:197362357-197362437 ( 47) TATAAACA 1 chr7:98399791-98399871 ( 16) TGGAAACA 1 chr1:211551193-211551273 ( 23) TGGAAACA 1 chr10:63539838-63539918 ( 34) TGTCAACA 1 chr20:33100967-33101047 ( 73) TGTCAACA 1 chr19:6066048-6066128 ( 44) TGTCAACA 1 chr11:63334623-63334703 ( 10) TGTCAACA 1 chr9:129350086-129350166 ( 30) AATAAACA 1 chr2:145418640-145418720 ( 22) AATAAACA 1 chr15:76016260-76016340 ( 35) AATAAACA 1 chr5:176041026-176041106 ( 35) AATAAACA 1 chr12:6404454-6404534 ( 50) AATAAACA 1 chr7:23570109-23570189 ( 27) AATAAACA 1 chr4:26727769-26727849 ( 35) AGGAAACA 1 chr5:125874939-125875019 ( 45) AGTCAACA 1 chrX:106954398-106954478 ( 70) AGGAAACA 1 chrX:123328239-123328319 ( 44) AGGAAACA 1 chrX:123994735-123994815 ( 56) CAGAAACA 1 chr2:178754927-178755007 ( 54) CATCAACA 1 chr1:159893583-159893663 ( 65) CAGAAACA 1 chr1:114473605-114473685 ( 61) TGAAAACA 1 chr6:159463452-159463532 ( 6) GATAAACA 1 chr2:48643149-48643229 ( 35) CATCAACA 1 chr16:85589186-85589266 ( 40) GGGAAACA 1 chr11:9590522-9590602 ( 46) TAGAAACA 1 chr18:77153907-77153987 ( 43) GGGAAACA 1 chr7:139521330-139521410 ( 69) GGGAAACA 1 chr16:57314459-57314539 ( 16) AGAAAACA 1 chr11:122954523-12295460 ( 34) TGGCAACA 1 chr10:3847451-3847531 ( 9) AGAAAACA 1 chr5:56333349-56333429 ( 42) TGGCAACA 1 chr16:2415022-2415102 ( 42) CAAAAACA 1 chr15:64134321-64134401 ( 29) CAAAAACA 1 chr5:133615485-133615565 ( 19) CAAAAACA 1 chr9:110252154-110252234 ( 31) AATCAACA 1 chr6:53544281-53544361 ( 38) CAAAAACA 1 chr2:69081225-69081305 ( 21) CAAAAACA 1 chr1:59523054-59523134 ( 41) CAAAAACA 1 chr7:32945065-32945145 ( 6) GGAAAACA 1 chr5:77823035-77823115 ( 42) GGAAAACA 1 chr2:234766610-234766690 ( 70) AGGCAACA 1 chrX:49605528-49605608 ( 1) GGAAAACA 1 chr1:196349620-196349700 ( 42) GGAAAACA 1 chr7:20346881-20346961 ( 62) GAGAAACA 1 chr19:38891997-38892077 ( 12) CAGCAACA 1 chr2:217556338-217556418 ( 13) CAGCAACA 1 chr4:120221462-120221542 ( 49) GAGAAACA 1 chr21:33629325-33629405 ( 13) GAGAAACA 1 chr6:79979812-79979892 ( 31) CAGCAACA 1 chr19:14492953-14493033 ( 47) GGGCAACA 1 chr8:116507509-116507589 ( 32) AAAAAACA 1 chr3:171522492-171522572 ( 38) TAGCAACA 1 chr10:75478075-75478155 ( 51) AAAAAACA 1 chr2:169570019-169570099 ( 57) AAAAAACA 1 chr5:95214331-95214411 ( 51) TAGCAACA 1 chrX:10165761-10165841 ( 47) TAGCAACA 1 chr3:45068602-45068682 ( 37) AGACAACA 1 chr22:29707089-29707169 ( 65) CAACAACA 1 chr22:22171064-22171144 ( 49) CAACAACA 1 chr4:106102598-106102678 ( 63) CAACAACA 1 chr10:21386897-21386977 ( 70) TAACAACA 1 chr1:246760765-246760845 ( 13) TAACAACA 1 chr6:10431904-10431984 ( 34) AAACAACA 1 chr10:3916059-3916139 ( 69) CCTAAACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NRTAAACA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.65378 E= 7.0e-020 -18 35 -48 17 66 -445 131 -1326 -30 -1326 19 93 128 40 -1326 -1326 179 -1326 -1326 -1326 179 -1326 -1326 -1326 -1326 216 -1326 -1326 179 -1326 -1326 -1326 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NRTAAACA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 98 E= 7.0e-020 0.255102 0.285714 0.153061 0.306122 0.459184 0.010204 0.530612 0.000000 0.234694 0.000000 0.244898 0.520408 0.704082 0.295918 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NRTAAACA MEME-3 regular expression -------------------------------------------------------------------------------- [TCA][GA][TGA][AC]AACA -------------------------------------------------------------------------------- Time 11.97 secs. ******************************************************************************** ******************************************************************************** MOTIF GGTTGCCA MEME-4 width = 8 sites = 41 llr = 333 E-value = 3.5e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTTGCCA MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::2::8 pos.-specific C 2:1::98: probability G 8a::6::: matrix T ::9a2122 bits 2.2 * 2.0 * 1.8 * * * 1.6 ** * * Relative 1.3 **** ** Entropy 1.1 **** *** (11.7 bits) 0.9 **** *** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGTTGCCA consensus T TT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTGCCA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr5:60600996-60601076 40 1.06e-05 GTGATGTAAA GGTTGCCA TGGTTATAAT chr6:126375737-126375817 10 1.06e-05 AAGATTGTG GGTTGCCA GCTCATGTTT chr3:73010004-73010084 46 1.06e-05 TGGTTCTTCA GGTTGCCA TGGGTGAACC chr5:121465157-121465237 33 1.06e-05 TTTGTTGACA GGTTGCCA GGATACATCC chr6:32081889-32081969 2 1.06e-05 A GGTTGCCA TAGTTACTTG chr17:27873282-27873362 35 2.04e-05 CATGATTTTT GGTTGCCT AGACATCAGG chr7:150574386-150574466 39 3.39e-05 TTACCCCAAG GGTTTCCA CGGAGAAATA chr14:75760837-75760917 73 3.39e-05 TTTACTGTTT GGTTTCCA chr3:37186471-37186551 65 3.39e-05 GTGTTGCCAT GGTTTCCA AATTAACA chr15:73886196-73886276 50 3.39e-05 GGTGTCCCAT GGTTTCCA AGACACACTG chr6:134906480-134906560 25 4.67e-05 CCCAAAGTGT GGTTGCTA GGGTATCATC chr9:3525839-3525919 69 4.67e-05 ACAAGGCAAC GGTTGCTA TAAC chrX:102092909-102092989 17 4.67e-05 ttgcaaataa ggttgcta tgtacatttg chr7:150063264-150063344 62 4.67e-05 ttgtttatta ggttgcta gctgggtgcc chr4:184942682-184942762 66 4.67e-05 tttcatattg ggttgcta tagttcc chr4:106102598-106102678 23 4.67e-05 ACAACACAGA GGTTGCTA AGCGACTTTA chr1:159893583-159893663 9 5.77e-05 GTGGGGGC CGTTGCCA TGGCTTCTGT chr1:20335080-20335160 12 5.77e-05 tgggtcatca cgttgcca tggaaaggag chr22:22161880-22161960 30 7.20e-05 TACTCAACAA GGTTACCA AGCAGTGGAA chr7:116772463-116772543 39 7.20e-05 acattctgtg ggttacca aggaaggctg chr22:22171064-22171144 41 7.20e-05 gttttgatag ggttacca CAACAACACG chr10:63539838-63539918 10 8.07e-05 CAGATCCTC GGCTGCCA GGAAAAGGAC chr12:71116952-71117032 18 9.33e-05 GATTGGCACT GGTTTCCT GTGTACAAGT chr1:60103960-60104040 4 9.33e-05 GTG GGTTTCCT TACTGTTGAT chr7:27803877-27803957 28 9.33e-05 tagtctcctt ggtttcct ccttatcttt chr17:38808352-38808432 48 1.05e-04 tattgtcttt ggttgctt gtggttacaa chrX:152647476-152647556 45 1.32e-04 CAGAAATGTA CGTTGCCT TGACCATGAT chr14:75743882-75743962 15 1.32e-04 ggccgcgcgg cgTTGCCT GGAGACGGCC chrX:106954398-106954478 62 1.32e-04 GTTTAGTCAG CGTTGCCT AGGAAACAAA chr19:6066826-6066906 17 1.59e-04 AGTCCACTCC CGTTTCCA AGAGCCTGTT chr2:191334725-191334805 25 1.59e-04 ATGGTTCCTT GGTTACCT GAGTGCTGCT chr4:26727769-26727849 68 1.72e-04 agacattttt ggttgtca gccag chr7:98399791-98399871 1 1.72e-04 . GGTTGTCA TCTGCCCTGG chr9:110252154-110252234 14 1.94e-04 TCCCTTCCAT CGTTGCTA TGGCAGCTAA chr2:217556338-217556418 73 1.94e-04 CAGAGGCTTT GGCTGCCT chr5:96159662-96159742 9 2.22e-04 accacaaa ggttacta agtgactaat chrX:123328239-123328319 72 2.22e-04 GAACAGATTA GGCTTCCA G chr7:32945065-32945145 30 2.37e-04 gtcgtagggt cgttacca ggaaaggggt chr6:90237477-90237557 14 2.48e-04 tcagggtggt ggctgcta aaggttgggt chr19:38694940-38695020 73 2.69e-04 taacacccca ggctacca chr10:52081975-52082055 26 3.38e-04 TCTTCTCAAA GGTTTTCA AATCTAAGGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTGCCA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:60600996-60601076 1.1e-05 39_[+4]_33 chr6:126375737-126375817 1.1e-05 9_[+4]_63 chr3:73010004-73010084 1.1e-05 45_[+4]_27 chr5:121465157-121465237 1.1e-05 32_[+4]_40 chr6:32081889-32081969 1.1e-05 1_[+4]_71 chr17:27873282-27873362 2e-05 34_[+4]_38 chr7:150574386-150574466 3.4e-05 38_[+4]_34 chr14:75760837-75760917 3.4e-05 72_[+4] chr3:37186471-37186551 3.4e-05 64_[+4]_8 chr15:73886196-73886276 3.4e-05 49_[+4]_23 chr6:134906480-134906560 4.7e-05 24_[+4]_48 chr9:3525839-3525919 4.7e-05 68_[+4]_4 chrX:102092909-102092989 4.7e-05 16_[+4]_56 chr7:150063264-150063344 4.7e-05 61_[+4]_11 chr4:184942682-184942762 4.7e-05 65_[+4]_7 chr4:106102598-106102678 4.7e-05 22_[+4]_50 chr1:159893583-159893663 5.8e-05 8_[+4]_64 chr1:20335080-20335160 5.8e-05 11_[+4]_61 chr22:22161880-22161960 7.2e-05 29_[+4]_43 chr7:116772463-116772543 7.2e-05 38_[+4]_34 chr22:22171064-22171144 7.2e-05 40_[+4]_32 chr10:63539838-63539918 8.1e-05 9_[+4]_63 chr12:71116952-71117032 9.3e-05 17_[+4]_55 chr1:60103960-60104040 9.3e-05 3_[+4]_69 chr7:27803877-27803957 9.3e-05 27_[+4]_45 chr17:38808352-38808432 0.00011 47_[+4]_25 chrX:152647476-152647556 0.00013 44_[+4]_28 chr14:75743882-75743962 0.00013 14_[+4]_58 chrX:106954398-106954478 0.00013 61_[+4]_11 chr19:6066826-6066906 0.00016 16_[+4]_56 chr2:191334725-191334805 0.00016 24_[+4]_48 chr4:26727769-26727849 0.00017 67_[+4]_5 chr7:98399791-98399871 0.00017 [+4]_72 chr9:110252154-110252234 0.00019 13_[+4]_59 chr2:217556338-217556418 0.00019 72_[+4] chr5:96159662-96159742 0.00022 8_[+4]_64 chrX:123328239-123328319 0.00022 71_[+4]_1 chr7:32945065-32945145 0.00024 29_[+4]_43 chr6:90237477-90237557 0.00025 13_[+4]_59 chr19:38694940-38695020 0.00027 72_[+4] chr10:52081975-52082055 0.00034 25_[+4]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTGCCA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTTGCCA width=8 seqs=41 chr5:60600996-60601076 ( 40) GGTTGCCA 1 chr6:126375737-126375817 ( 10) GGTTGCCA 1 chr3:73010004-73010084 ( 46) GGTTGCCA 1 chr5:121465157-121465237 ( 33) GGTTGCCA 1 chr6:32081889-32081969 ( 2) GGTTGCCA 1 chr17:27873282-27873362 ( 35) GGTTGCCT 1 chr7:150574386-150574466 ( 39) GGTTTCCA 1 chr14:75760837-75760917 ( 73) GGTTTCCA 1 chr3:37186471-37186551 ( 65) GGTTTCCA 1 chr15:73886196-73886276 ( 50) GGTTTCCA 1 chr6:134906480-134906560 ( 25) GGTTGCTA 1 chr9:3525839-3525919 ( 69) GGTTGCTA 1 chrX:102092909-102092989 ( 17) GGTTGCTA 1 chr7:150063264-150063344 ( 62) GGTTGCTA 1 chr4:184942682-184942762 ( 66) GGTTGCTA 1 chr4:106102598-106102678 ( 23) GGTTGCTA 1 chr1:159893583-159893663 ( 9) CGTTGCCA 1 chr1:20335080-20335160 ( 12) CGTTGCCA 1 chr22:22161880-22161960 ( 30) GGTTACCA 1 chr7:116772463-116772543 ( 39) GGTTACCA 1 chr22:22171064-22171144 ( 41) GGTTACCA 1 chr10:63539838-63539918 ( 10) GGCTGCCA 1 chr12:71116952-71117032 ( 18) GGTTTCCT 1 chr1:60103960-60104040 ( 4) GGTTTCCT 1 chr7:27803877-27803957 ( 28) GGTTTCCT 1 chr17:38808352-38808432 ( 48) GGTTGCTT 1 chrX:152647476-152647556 ( 45) CGTTGCCT 1 chr14:75743882-75743962 ( 15) CGTTGCCT 1 chrX:106954398-106954478 ( 62) CGTTGCCT 1 chr19:6066826-6066906 ( 17) CGTTTCCA 1 chr2:191334725-191334805 ( 25) GGTTACCT 1 chr4:26727769-26727849 ( 68) GGTTGTCA 1 chr7:98399791-98399871 ( 1) GGTTGTCA 1 chr9:110252154-110252234 ( 14) CGTTGCTA 1 chr2:217556338-217556418 ( 73) GGCTGCCT 1 chr5:96159662-96159742 ( 9) GGTTACTA 1 chrX:123328239-123328319 ( 72) GGCTTCCA 1 chr7:32945065-32945145 ( 30) CGTTACCA 1 chr6:90237477-90237557 ( 14) GGCTGCTA 1 chr19:38694940-38695020 ( 73) GGCTACCA 1 chr10:52081975-52082055 ( 26) GGTTTTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTGCCA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.76163 E= 3.5e-004 -1200 -20 191 -1200 -1200 -1200 222 -1200 -1200 -88 -1200 169 -1200 -1200 -1200 188 -76 -1200 145 -16 -1200 205 -1200 -190 -1200 175 -1200 -16 138 -1200 -1200 -16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTGCCA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 41 E= 3.5e-004 0.000000 0.195122 0.804878 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.121951 0.000000 0.878049 0.000000 0.000000 0.000000 1.000000 0.170732 0.000000 0.585366 0.243902 0.000000 0.926829 0.000000 0.073171 0.000000 0.756098 0.000000 0.243902 0.756098 0.000000 0.000000 0.243902 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTGCCA MEME-4 regular expression -------------------------------------------------------------------------------- GGTT[GT]C[CT][AT] -------------------------------------------------------------------------------- Time 15.15 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTTTKKN MEME-5 width = 8 sites = 40 llr = 314 E-value = 1.9e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTTTKKN MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::2:2 pos.-specific C :::::::2 probability G :a:::573 matrix T a:aaa344 bits 2.2 * 2.0 * 1.8 ***** 1.6 ***** Relative 1.3 ***** Entropy 1.1 ***** * (11.3 bits) 0.9 ***** * 0.7 ***** * 0.4 ******* 0.2 ******* 0.0 -------- Multilevel TGTTTGGT consensus TTG sequence A C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTKKN MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:117657620-117657700 51 1.46e-05 TAACGTAACT TGTTTGGT ATATTTGTTT chr12:106697130-10669721 18 2.61e-05 CGGCAGCGTG TGTTTGGG ATTTGTTGCC chr10:97026600-97026680 30 2.61e-05 ATGATGTAAT TGTTTGGG CTTTGTATTT chr4:100591710-100591790 32 2.61e-05 GAAGGCAATG TGTTTGGG ACAGATAGTC chr1:60103960-60104040 27 3.81e-05 TTGATTTACA TGTTTGGC CAGATTTCCA chr3:3152027-3152107 40 3.81e-05 TTATGTGCCT TGTTTGGC TACAGTAGTT chr2:64429772-64429852 5 5.36e-05 GATA TGTTTGGA GAAACTCCTA chr6:14721740-14721820 36 5.36e-05 ATATAAGAAA TGTTTGGA AGACAAAGAT chr19:54370822-54370902 68 9.07e-05 TGTGTCTTCC TGTTTTGT CACCA chr14:105948357-10594843 18 9.07e-05 CTGCCTGCCG TGTTTGTT TCCAAGTCAT chr7:20346881-20346961 48 9.07e-05 CATGGTAACG TGTTTGTT CCCATGGAGA chr2:149416789-149416869 19 9.07e-05 GGGTTTGTTT TGTTTTGT TACCGCAGTT chr13:72287194-72287274 47 9.07e-05 ttttcctttc tgttttGT AACCATGGTA chr4:187754289-187754369 29 9.07e-05 gggagttttg tgtttgtt accatagaga chr7:130406802-130406882 23 9.07e-05 TTGTTGTTTT TGTTTTGT TTCATTAAAG chr6:138145565-138145645 69 9.07e-05 CGGCAACAGC TGTTTGTT ATTG chr6:90237477-90237557 54 9.07e-05 tttgtttttt tgttttgt tttgtttttt chr1:245132880-245132960 69 1.20e-04 GACGACGCAA TGTTTGTG CTAT chr5:95214331-95214411 23 1.20e-04 GCAATCTCTC TGTTTTGG AAACTTTCCT chr3:132506583-132506663 47 1.20e-04 atggactgaa tgtttgtg tctcccccaa chrX:10165761-10165841 22 1.20e-04 CCCGCTGCTC TGTTTGTG TGTACTGACT chr5:60600996-60601076 61 1.40e-04 TTATAATCTC TGTTTAGT CAATAGTGTG chr1:154178819-154178899 12 1.40e-04 CAGGCTCCTC TGTTTAGT TCAGTAACCA chr10:52294577-52294657 30 1.40e-04 ACACCTTTCT TGTTTAGT TTTGTATCCA chr6:126375737-126375817 23 1.86e-04 TGCCAGCTCA TGTTTGTC CTTATCTCCA chr10:77664379-77664459 10 1.86e-04 CGAGGGAAT TGTTTGTC CCTGTCTCCA chr1:196040223-196040303 22 1.86e-04 CAACTTCTCG TGTTTTGC TTTTTTGTTT chrX:106954398-106954478 41 1.86e-04 GAAGTTGCAG TGTTTGTC TCTGTTTAGT chr1:173992850-173992930 72 1.86e-04 CCAACTTCCT TGTTTAGG T chr2:69536937-69537017 2 1.86e-04 A TGTTTGTC AGGAAAAAAA chr8:37739474-37739554 22 2.02e-04 TGATGAAGGG TGTTTAGC TTTTGTAAAT chr2:205317339-205317419 20 2.42e-04 GACTCTGTGG TGTTTTGA CCATCTGCAG chr1:236579751-236579831 6 2.42e-04 TTTCC TGTTTTGA AAGAAAAAGA chr22:22171064-22171144 30 2.42e-04 ctttatttcc tgttttga tagggttacc chr14:75229735-75229815 2 2.65e-04 a tgtttttt tgttgttgtt chr1:22087652-22087732 30 3.05e-04 CACACCCGTT TGTTTAGA TAGAAGAGTA chr2:217852083-217852163 58 3.05e-04 TGTGCCTGGT TGTTTAGA ATAAGACAGC chr9:4663486-4663566 21 3.69e-04 ATTCAACAAC TGTTTATG TTTCCAGGAC chr5:148865403-148865483 35 3.69e-04 TTTCTTGCTA TGTTTATG CATTTCCTAG chr5:176041026-176041106 71 4.72e-04 AAAGCAAGCG TGTGTGGC AA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTKKN MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:117657620-117657700 1.5e-05 50_[+5]_22 chr12:106697130-10669721 2.6e-05 17_[+5]_55 chr10:97026600-97026680 2.6e-05 29_[+5]_43 chr4:100591710-100591790 2.6e-05 31_[+5]_41 chr1:60103960-60104040 3.8e-05 26_[+5]_46 chr3:3152027-3152107 3.8e-05 39_[+5]_33 chr2:64429772-64429852 5.4e-05 4_[+5]_68 chr6:14721740-14721820 5.4e-05 35_[+5]_37 chr19:54370822-54370902 9.1e-05 67_[+5]_5 chr14:105948357-10594843 9.1e-05 17_[+5]_55 chr7:20346881-20346961 9.1e-05 47_[+5]_25 chr2:149416789-149416869 9.1e-05 18_[+5]_54 chr13:72287194-72287274 9.1e-05 46_[+5]_26 chr4:187754289-187754369 9.1e-05 28_[+5]_44 chr7:130406802-130406882 9.1e-05 22_[+5]_50 chr6:138145565-138145645 9.1e-05 68_[+5]_4 chr6:90237477-90237557 9.1e-05 53_[+5]_19 chr1:245132880-245132960 0.00012 68_[+5]_4 chr5:95214331-95214411 0.00012 22_[+5]_50 chr3:132506583-132506663 0.00012 46_[+5]_26 chrX:10165761-10165841 0.00012 21_[+5]_51 chr5:60600996-60601076 0.00014 60_[+5]_12 chr1:154178819-154178899 0.00014 11_[+5]_61 chr10:52294577-52294657 0.00014 29_[+5]_43 chr6:126375737-126375817 0.00019 22_[+5]_50 chr10:77664379-77664459 0.00019 9_[+5]_63 chr1:196040223-196040303 0.00019 21_[+5]_51 chrX:106954398-106954478 0.00019 40_[+5]_32 chr1:173992850-173992930 0.00019 71_[+5]_1 chr2:69536937-69537017 0.00019 1_[+5]_71 chr8:37739474-37739554 0.0002 21_[+5]_51 chr2:205317339-205317419 0.00024 19_[+5]_53 chr1:236579751-236579831 0.00024 5_[+5]_67 chr22:22171064-22171144 0.00024 29_[+5]_43 chr14:75229735-75229815 0.00027 1_[+5]_71 chr1:22087652-22087732 0.0003 29_[+5]_43 chr2:217852083-217852163 0.0003 57_[+5]_15 chr9:4663486-4663566 0.00037 20_[+5]_52 chr5:148865403-148865483 0.00037 34_[+5]_38 chr5:176041026-176041106 0.00047 70_[+5]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTKKN MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTTTKKN width=8 seqs=40 chr1:117657620-117657700 ( 51) TGTTTGGT 1 chr12:106697130-10669721 ( 18) TGTTTGGG 1 chr10:97026600-97026680 ( 30) TGTTTGGG 1 chr4:100591710-100591790 ( 32) TGTTTGGG 1 chr1:60103960-60104040 ( 27) TGTTTGGC 1 chr3:3152027-3152107 ( 40) TGTTTGGC 1 chr2:64429772-64429852 ( 5) TGTTTGGA 1 chr6:14721740-14721820 ( 36) TGTTTGGA 1 chr19:54370822-54370902 ( 68) TGTTTTGT 1 chr14:105948357-10594843 ( 18) TGTTTGTT 1 chr7:20346881-20346961 ( 48) TGTTTGTT 1 chr2:149416789-149416869 ( 19) TGTTTTGT 1 chr13:72287194-72287274 ( 47) TGTTTTGT 1 chr4:187754289-187754369 ( 29) TGTTTGTT 1 chr7:130406802-130406882 ( 23) TGTTTTGT 1 chr6:138145565-138145645 ( 69) TGTTTGTT 1 chr6:90237477-90237557 ( 54) TGTTTTGT 1 chr1:245132880-245132960 ( 69) TGTTTGTG 1 chr5:95214331-95214411 ( 23) TGTTTTGG 1 chr3:132506583-132506663 ( 47) TGTTTGTG 1 chrX:10165761-10165841 ( 22) TGTTTGTG 1 chr5:60600996-60601076 ( 61) TGTTTAGT 1 chr1:154178819-154178899 ( 12) TGTTTAGT 1 chr10:52294577-52294657 ( 30) TGTTTAGT 1 chr6:126375737-126375817 ( 23) TGTTTGTC 1 chr10:77664379-77664459 ( 10) TGTTTGTC 1 chr1:196040223-196040303 ( 22) TGTTTTGC 1 chrX:106954398-106954478 ( 41) TGTTTGTC 1 chr1:173992850-173992930 ( 72) TGTTTAGG 1 chr2:69536937-69537017 ( 2) TGTTTGTC 1 chr8:37739474-37739554 ( 22) TGTTTAGC 1 chr2:205317339-205317419 ( 20) TGTTTTGA 1 chr1:236579751-236579831 ( 6) TGTTTTGA 1 chr22:22171064-22171144 ( 30) TGTTTTGA 1 chr14:75229735-75229815 ( 2) TGTTTTTT 1 chr1:22087652-22087732 ( 30) TGTTTAGA 1 chr2:217852083-217852163 ( 58) TGTTTAGA 1 chr9:4663486-4663566 ( 21) TGTTTATG 1 chr5:148865403-148865483 ( 35) TGTTTATG 1 chr5:176041026-176041106 ( 71) TGTGTGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTKKN MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.77545 E= 1.9e+001 -1197 -1197 -1197 188 -1197 -1197 222 -1197 -1197 -1197 -1197 188 -1197 -1197 -309 184 -1197 -1197 -1197 188 -36 -1197 122 1 -1197 -1197 160 36 -73 1 22 36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTKKN MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 40 E= 1.9e+001 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.025000 0.975000 0.000000 0.000000 0.000000 1.000000 0.225000 0.000000 0.500000 0.275000 0.000000 0.000000 0.650000 0.350000 0.175000 0.225000 0.250000 0.350000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTKKN MEME-5 regular expression -------------------------------------------------------------------------------- TGTTT[GTA][GT][TGC] -------------------------------------------------------------------------------- Time 18.25 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:3371258-3371338 4.48e-03 80 chr6:79979812-79979892 1.12e-01 80 chr5:56333349-56333429 1.41e-02 80 chr5:759281-759361 1.79e-02 80 chr4:186157182-186157262 1.58e-02 80 chr1:197362357-197362437 6.38e-03 80 chr1:59523054-59523134 1.42e-02 80 chr4:106102598-106102678 3.57e-03 22_[+4(4.67e-05)]_50 chr10:21190166-21190246 1.64e-02 80 chr4:154457018-154457098 5.53e-03 80 chr1:197288905-197288985 1.09e-03 80 chr2:146535141-146535221 6.46e-02 24_[+3(4.57e-05)]_48 chr15:73886196-73886276 1.86e-03 19_[+3(4.57e-05)]_22_[+4(3.39e-05)]_\ 23 chr2:69536937-69537017 3.46e-05 80 chrX:123328239-123328319 3.97e-04 80 chr19:38694940-38695020 3.19e-03 50_[+3(7.25e-05)]_22 chr1:10313978-10314058 3.68e-04 17_[+2(1.26e-05)]_55 chr4:184942682-184942762 7.00e-03 65_[+4(4.67e-05)]_7 chr2:48643149-48643229 9.75e-03 80 chr1:57287220-57287300 2.04e-04 68_[+3(7.25e-05)]_4 chr6:109218664-109218744 1.10e-01 80 chr6:14721740-14721820 1.68e-03 35_[+5(5.36e-05)]_37 chr2:217852083-217852163 3.79e-02 80 chr5:148865403-148865483 2.85e-04 80 chr16:68180670-68180750 7.98e-02 80 chrX:10165761-10165841 3.13e-03 80 chr16:57307536-57307616 1.72e-01 80 chr5:126297647-126297727 4.99e-02 58_[+3(4.57e-05)]_14 chr3:3152027-3152107 5.45e-03 21_[+5(9.07e-05)]_10_[+5(3.81e-05)]_\ 33 chr19:16435327-16435407 2.30e-01 80 chr3:37186471-37186551 1.13e-04 64_[+4(3.39e-05)]_8 chr1:117657620-117657700 1.68e-04 50_[+5(1.46e-05)]_5_[+5(9.07e-05)]_\ 9 chr14:90379077-90379157 3.60e-02 80 chr10:52081975-52082055 7.17e-02 80 chr1:185536268-185536348 1.45e-02 80 chr6:159463452-159463532 5.75e-03 26_[+1(9.02e-05)]_46 chr3:193693199-193693279 5.57e-02 80 chr3:45068602-45068682 1.81e-04 56_[+1(1.52e-05)]_16 chr8:56886733-56886813 8.20e-02 80 chr12:52549433-52549513 8.06e-03 14_[+3(4.57e-05)]_58 chr7:139521330-139521410 3.44e-02 20_[+1(3.59e-05)]_52 chr21:33629325-33629405 3.62e-03 80 chr16:67891914-67891994 2.14e-03 61_[+3(2.07e-05)]_11 chr2:188374878-188374958 5.04e-03 80 chr1:173992850-173992930 2.03e-05 42_[+2(1.26e-05)]_30 chr6:32081889-32081969 1.09e-03 1_[+4(1.06e-05)]_71 chrX:106954398-106954478 1.11e-04 80 chr2:64429772-64429852 1.10e-04 4_[+5(5.36e-05)]_11_[+2(1.26e-05)]_\ 49 chr1:117414612-117414692 1.85e-03 80 chr6:90237477-90237557 2.15e-04 28_[+4(4.67e-05)]_17_[+5(9.07e-05)]_\ 19 chr3:132506583-132506663 1.49e-03 14_[+5(9.07e-05)]_6_[+2(1.26e-05)]_\ 44 chr2:191334725-191334805 1.73e-02 80 chr12:27390910-27390990 5.30e-03 80 chr6:138145565-138145645 2.95e-04 68_[+5(9.07e-05)]_4 chr1:161337646-161337726 2.71e-04 37_[+1(6.65e-05)]_35 chr7:115995324-115995404 2.72e-03 28_[+1(1.52e-05)]_44 chr1:169056424-169056504 2.34e-03 80 chrX:117405945-117406025 7.60e-03 80 chr7:150063264-150063344 1.83e-03 61_[+4(4.67e-05)]_11 chr5:95214331-95214411 1.53e-02 80 chr5:96159662-96159742 1.72e-02 80 chr1:246760765-246760845 1.35e-01 80 chr1:196040223-196040303 1.62e-03 40_[+2(1.26e-05)]_32 chr5:121465157-121465237 5.75e-05 32_[+4(1.06e-05)]_40 chr8:28233196-28233276 1.46e-01 80 chr3:171919131-171919211 1.09e-01 80 chr5:148865603-148865683 6.22e-01 80 chr7:23570109-23570189 1.27e-02 80 chr11:62319360-62319440 4.98e-04 43_[+2(3.89e-05)]_29 chr18:43192007-43192087 1.95e-02 80 chr18:77153907-77153987 1.69e-01 80 chr2:169570019-169570099 5.06e-01 80 chr10:75478075-75478155 4.18e-01 80 chr7:130406802-130406882 3.03e-02 22_[+5(9.07e-05)]_50 chr6:158168642-158168722 6.31e-02 80 chr6:44893341-44893421 2.42e-01 80 chr4:120221462-120221542 3.35e-02 28_[+1(1.52e-05)]_44 chr3:196895649-196895729 2.91e-03 80 chr2:217556338-217556418 1.32e-03 80 chr11:68714089-68714169 3.96e-01 80 chr4:187754289-187754369 3.36e-03 28_[+5(9.07e-05)]_44 chr5:673013-673093 2.81e-03 20_[+1(1.52e-05)]_52 chr2:69081225-69081305 1.49e-03 50_[+1(1.52e-05)]_22 chr12:49595822-49595902 8.08e-03 27_[+2(1.26e-05)]_45 chr11:86203874-86203954 7.35e-03 41_[+1(3.59e-05)]_31 chr9:4663486-4663566 4.46e-05 70_[+2(1.26e-05)]_2 chr5:134495484-134495564 5.34e-04 30_[+1(6.65e-05)]_4_[+1(3.59e-05)]_\ 1_[+3(7.25e-05)]_21 chr11:63334623-63334703 4.21e-03 50_[+1(3.59e-05)]_22 chr3:156398876-156398956 3.72e-04 29_[+1(9.02e-05)]_43 chr22:22171064-22171144 9.45e-04 40_[+4(7.20e-05)]_32 chr11:9590522-9590602 4.25e-03 80 chr7:27803877-27803957 5.81e-02 27_[+4(9.33e-05)]_45 chr6:53544281-53544361 8.11e-03 80 chr18:54802253-54802333 1.50e-03 48_[+1(1.52e-05)]_24 chr1:185483539-185483619 5.49e-03 14_[+1(1.52e-05)]_58 chr12:6404454-6404534 9.70e-04 15_[+1(3.59e-05)]_57 chr1:40480074-40480154 2.98e-02 80 chr10:7311519-7311599 2.34e-01 80 chr2:169276801-169276881 4.98e-02 53_[+3(7.25e-05)]_19 chr19:1860194-1860274 7.82e-03 33_[+1(3.59e-05)]_39 chr3:171522492-171522572 1.63e-02 80 chrX:102092909-102092989 6.16e-03 16_[+4(4.67e-05)]_56 chr12:29317853-29317933 8.40e-04 20_[+2(3.89e-05)]_52 chr7:92190062-92190142 3.03e-01 80 chr4:80980027-80980107 1.23e-01 80 chr19:38891997-38892077 7.96e-02 80 chr5:157502486-157502566 2.24e-02 80 chr5:114877913-114877993 1.34e-03 44_[+2(1.26e-05)]_28 chr5:148459616-148459696 9.42e-03 80 chr2:55183564-55183644 3.14e-01 80 chr19:45954076-45954156 8.02e-03 80 chr13:72287194-72287274 1.85e-03 46_[+5(9.07e-05)]_26 chr11:77780682-77780762 1.22e-02 35_[+3(4.57e-05)]_37 chr13:37614198-37614278 3.25e-02 80 chr5:125874939-125875019 6.84e-03 80 chr1:71330079-71330159 4.22e-02 80 chr5:176041026-176041106 7.13e-02 80 chr19:6066048-6066128 1.27e-03 80 chr17:78010398-78010478 4.14e-02 80 chr9:110252154-110252234 2.14e-02 80 chr7:137638462-137638542 2.42e-05 63_[+3(4.57e-05)]_9 chr10:52294577-52294657 3.01e-03 80 chr1:20335080-20335160 1.07e-04 11_[+4(5.77e-05)]_30_[+1(1.52e-05)]_\ 23 chr2:149416789-149416869 1.17e-02 13_[+5(9.07e-05)]_59 chr5:133615485-133615565 1.24e-01 80 chr1:60103960-60104040 7.93e-07 3_[+4(9.33e-05)]_2_[+2(6.84e-05)]_5_\ [+5(3.81e-05)]_8_[+1(1.52e-05)]_30 chr10:21619040-21619120 3.34e-02 80 chr10:3916059-3916139 1.20e-05 16_[+2(6.84e-05)]_18_[+4(3.39e-05)]_\ 30 chr15:57374480-57374560 2.20e-02 80 chr1:159869941-159870021 2.96e-03 24_[+1(6.65e-05)]_48 chr7:116772463-116772543 2.33e-03 38_[+4(7.20e-05)]_34 chr11:15988805-15988885 8.11e-03 80 chr4:100591710-100591790 3.05e-02 31_[+5(2.61e-05)]_41 chr14:75743882-75743962 6.30e-05 50_[+3(4.57e-05)]_22 chr1:236579751-236579831 6.76e-04 80 chr14:75760837-75760917 2.48e-05 67_[+5(1.46e-05)]_5 chr19:6066826-6066906 3.95e-04 29_[+2(1.26e-05)]_43 chr8:116507509-116507589 9.55e-03 80 chr16:85589186-85589266 3.07e-02 65_[+1(6.65e-05)]_7 chr8:141801033-141801113 2.85e-03 26_[+2(1.26e-05)]_46 chr1:111889181-111889261 5.68e-03 51_[+1(6.65e-05)]_21 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******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n07.farnam.hpc.yale.internal ********************************************************************************